AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0972120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0972120 MtrunA17_Chr6g0451081 98.711 776 10 0 1 776 1 776 0.0 1578
Msa0972120 MtrunA17_Chr3g0128831 63.439 785 258 8 13 774 14 792 0.0 1008
Msa0972120 MtrunA17_Chr6g0461871 56.116 793 323 11 1 776 1 785 0.0 886
Msa0972120 MtrunA17_Chr5g0430731 53.488 774 330 7 4 776 10 754 0.0 842
Msa0972120 MtrunA17_Chr8g0387661 48.020 783 379 8 13 776 19 792 0.0 743
Msa0972120 MtrunA17_Chr2g0297291 48.158 787 372 11 1 776 28 789 0.0 711
Msa0972120 MtrunA17_Chr8g0393241 46.164 795 383 11 13 773 13 796 0.0 707
Msa0972120 MtrunA17_Chr4g0052401 45.038 786 396 10 1 776 28 787 0.0 672
Msa0972120 MtrunA17_Chr5g0413721 72.685 432 116 1 1 430 1 432 0.0 659
Msa0972120 MtrunA17_Chr5g0413721 65.642 358 111 4 427 776 518 871 2.70e-156 476
Msa0972120 MtrunA17_Chr4g0055471 43.726 773 404 9 17 776 61 815 0.0 659
Msa0972120 MtrunA17_Chr8g0365001 45.186 779 400 9 8 776 79 840 0.0 655
Msa0972120 MtrunA17_Chr7g0268981 41.366 776 406 8 1 776 47 773 0.0 622
Msa0972120 MtrunA17_Chr2g0279131 41.997 781 422 9 8 776 88 849 0.0 597
Msa0972120 MtrunA17_Chr8g0380281 40.287 767 436 8 16 776 32 782 0.0 586
Msa0972120 MtrunA17_Chr5g0429991 41.304 782 426 11 8 776 88 849 0.0 568
Msa0972120 MtrunA17_Chr5g0430571 46.897 580 243 8 198 776 20 535 7.57e-175 513
Msa0972120 MtrunA17_Chr8g0375411 38.127 758 383 10 18 775 26 697 8.92e-172 511
Msa0972120 MtrunA17_Chr8g0344561 38.538 602 327 9 176 776 13 572 1.19e-148 447
Msa0972120 MtrunA17_Chr2g0297311 52.500 400 176 5 29 426 58 445 5.32e-134 405
Msa0972120 MtrunA17_Chr8g0365031 44.240 434 233 3 198 627 41 469 1.58e-125 386
Msa0972120 MtrunA17_Chr8g0344591 40.000 455 246 5 176 630 13 440 5.32e-117 361
Msa0972120 MtrunA17_Chr2g0297321 44.068 354 186 4 426 776 3 347 3.00e-94 298
Msa0972120 MtrunA17_Chr5g0413751 73.864 176 46 0 426 601 133 308 1.46e-93 294
Msa0972120 MtrunA17_Chr5g0413751 61.957 92 33 1 83 172 47 138 2.90e-26 110
Msa0972120 MtrunA17_Chr5g0430551 60.248 161 61 1 16 176 6 163 1.73e-60 202
Msa0972120 MtrunA17_Chr8g0365041 50.286 175 83 2 13 187 55 225 3.95e-52 181
Msa0972120 MtrunA17_Chr8g0344581 55.128 156 61 3 21 176 4 150 3.14e-48 167
Msa0972120 MtrunA17_Chr8g0344551 54.140 157 63 3 20 176 3 150 6.85e-48 166
Msa0972120 MtrunA17_Chr5g0413761 44.000 100 51 2 645 739 1 100 1.44e-17 79.0
Msa0972120 MtrunA17_Chr1g0159401 36.364 121 67 4 174 293 12 123 1.81e-15 74.7
Msa0972120 MtrunA17_Chr6g0467721 36.747 166 94 6 179 338 8 168 6.22e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0972120 AT5G14880.1 75.888 788 171 4 1 776 1 781 0.0 1214
Msa0972120 AT1G70300.1 73.308 783 201 4 1 776 1 782 0.0 1171
Msa0972120 AT2G40540.1 64.240 783 254 5 13 774 15 792 0.0 1030
Msa0972120 AT2G40540.5 64.240 783 254 5 13 774 15 792 0.0 1030
Msa0972120 AT2G40540.4 64.240 783 254 5 13 774 15 792 0.0 1030
Msa0972120 AT2G40540.2 64.240 783 254 5 13 774 15 792 0.0 1030
Msa0972120 AT2G40540.3 64.240 783 254 5 13 774 15 792 0.0 1030
Msa0972120 AT3G02050.1 54.638 787 331 12 8 776 11 789 0.0 811
Msa0972120 AT2G30070.1 50.000 774 318 5 3 776 8 712 0.0 777
Msa0972120 AT4G23640.1 49.809 785 360 11 13 776 4 775 0.0 753
Msa0972120 AT1G31120.1 48.400 750 367 10 29 776 65 796 0.0 676
Msa0972120 AT1G60160.1 45.887 778 386 10 8 776 76 827 0.0 674
Msa0972120 AT2G35060.4 46.400 750 377 8 29 776 66 792 0.0 663
Msa0972120 AT2G35060.1 46.400 750 377 8 29 776 66 792 0.0 663
Msa0972120 AT2G35060.3 46.400 750 377 8 29 776 66 792 0.0 663
Msa0972120 AT4G19960.2 47.175 761 378 8 25 776 62 807 0.0 660
Msa0972120 AT2G35060.2 46.338 751 377 9 29 776 66 793 0.0 659
Msa0972120 AT4G19960.1 46.203 777 378 9 25 776 62 823 0.0 650
Msa0972120 AT4G19960.3 45.616 787 378 9 25 776 62 833 0.0 646
Msa0972120 AT2G30070.2 47.424 660 278 5 117 776 2 592 0.0 626
Msa0972120 AT4G13420.1 41.470 762 415 11 16 776 54 785 0.0 621
Msa0972120 AT4G33530.1 41.357 781 428 8 8 776 93 855 0.0 591
Msa0972120 AT5G09400.1 41.335 779 433 10 9 776 93 858 0.0 570
Msa0972120 AT4G19960.4 45.763 590 303 4 196 776 5 586 3.57e-174 513
Msa0972120 AT4G33530.2 40.446 628 348 6 161 776 14 627 4.08e-163 486

Find 199 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCATGCTTACCTTAAT+TGG 0.066487 6_4:-4294694 None:intergenic
CTGCATTTGTCTCTCTTTCT+TGG 0.130016 6_4:+4294375 Msa0972120:five_prime_UTR
GCAGATTGCTTTCACTTTCT+TGG 0.144333 6_4:+4298594 Msa0972120:intron
AAGAAAGTTGTTATAAATTA+TGG 0.166759 6_4:+4300524 Msa0972120:CDS
CTTCTTGTTCTTGCTTTGAT+TGG 0.192299 6_4:+4295250 Msa0972120:CDS
GGTTGTGTCTAAATTCTTAA+AGG 0.195614 6_4:+4294591 Msa0972120:five_prime_UTR
ATGGGGAGGTTGGATGTCTT+TGG 0.205662 6_4:+4297893 Msa0972120:CDS
TTCTTTGATCCTAGCATATA+TGG 0.210177 6_4:+4298624 Msa0972120:CDS
ATTTGCTTTCTATTGTTCTT+TGG 0.224671 6_4:+4299678 Msa0972120:CDS
TTAGGAATTGTGAGGGTTAA+AGG 0.225977 6_4:+4299888 Msa0972120:CDS
TGTTCCTAAAATCGATTTAA+AGG 0.230656 6_4:+4301114 Msa0972120:three_prime_UTR
GTTCTCACACCAGCAATTTC+TGG 0.236234 6_4:+4295298 Msa0972120:CDS
AGAAGCTATGTATGCTGATT+TGG 0.242139 6_4:+4298031 Msa0972120:CDS
ATCAAACAGTGTTCCTCTTT+AGG 0.243451 6_4:+4298904 Msa0972120:CDS
GATCAAGGTGTGAGAGGTTT+TGG 0.246719 6_4:-4294115 None:intergenic
TCAAACAGTGTTCCTCTTTA+GGG 0.263046 6_4:+4298905 Msa0972120:CDS
TTTCTTGGTGTACATAAATA+AGG 0.265150 6_4:+4300796 Msa0972120:three_prime_UTR
TTAAAATTTATAAGTGGTTA+TGG 0.275466 6_4:-4294041 None:intergenic
CTTTGTCTTGCTGTTACAAT+TGG 0.282180 6_4:+4299015 Msa0972120:CDS
CTTTAATCAATTGTCTATTC+AGG 0.286350 6_4:+4298058 Msa0972120:CDS
CTTGAAAGTGACTATAGAAT+TGG 0.286360 6_4:+4298679 Msa0972120:CDS
GGAAGAACTGCTTGAGCTTA+TGG 0.291530 6_4:+4300427 Msa0972120:CDS
TGGGGAGGTTGGATGTCTTT+GGG 0.302288 6_4:+4297894 Msa0972120:CDS
CAAAGGAGTATAGGCTTTAT+AGG 0.319020 6_4:+4300078 Msa0972120:CDS
ATTGGAACATGCATGGTTAT+TGG 0.322273 6_4:+4295268 Msa0972120:CDS
GATACAAATGAAGAAATCTT+TGG 0.323486 6_4:+4294953 Msa0972120:CDS
TGATCCTTATACATGATAAA+TGG 0.325656 6_4:+4300692 Msa0972120:three_prime_UTR
CGAGTTCGATGTTCAAAATA+AGG 0.332372 6_4:+4299830 Msa0972120:CDS
ACCTCATGCATCTACCTTAG+AGG 0.333172 6_4:+4300598 Msa0972120:CDS
GCCGCCATTTATCATGTATA+AGG 0.334281 6_4:-4300696 None:intergenic
GTATCTACATTTCATATTGA+TGG 0.336567 6_4:-4300865 None:intergenic
TTCTTATTGTCATGTATGTA+TGG 0.341084 6_4:+4299784 Msa0972120:CDS
ATGGAAGCATGTGTTGGTTT+TGG 0.347613 6_4:+4294838 Msa0972120:CDS
AAGATGAGTGAGAGGGCAAT+AGG 0.347708 6_4:-4299762 None:intergenic
AGATTCTTAGTTGGCCGAAT+TGG 0.355000 6_4:+4300053 Msa0972120:CDS
TAAAATTTATAAGTGGTTAT+GGG 0.360922 6_4:-4294040 None:intergenic
CTCGGTTTAGGCCCGACTTT+AGG 0.362445 6_4:+4299870 Msa0972120:CDS
TCAGCTAGCTGATGAGGATT+TGG 0.362778 6_4:+4295129 Msa0972120:CDS
ATCAGTATCGCACAAGCAAC+TGG 0.364505 6_4:-4297690 None:intergenic
GGAAAGCTCTAAACCTGATA+TGG 0.365432 6_4:-4295808 None:intergenic
TGCTGCATTTCCCATTCGTT+TGG 0.365661 6_4:-4299049 None:intergenic
GATCCACAAGAACCCAATTA+AGG 0.370887 6_4:+4294681 Msa0972120:CDS
CTGATATGCATCAGTACTAT+TGG 0.371849 6_4:+4297786 Msa0972120:CDS
TCAAGTTCCTTGAAGGTGCT+TGG 0.372308 6_4:+4299736 Msa0972120:CDS
GATAATAATTCTCAAATAGA+AGG 0.372990 6_4:+4300308 Msa0972120:CDS
TACATAAATAAGGTATTTGT+TGG 0.377644 6_4:+4300806 Msa0972120:three_prime_UTR
ATCAATTGGCTCCTCGGTTT+AGG 0.380877 6_4:+4299858 Msa0972120:CDS
GTTTCATGCTTACCTTAATT+GGG 0.384084 6_4:-4294693 None:intergenic
GGGATTCTATTGTGTATAAC+AGG 0.384626 6_4:+4297918 Msa0972120:CDS
ATAGATCATACCTACCTCTA+AGG 0.385784 6_4:-4300612 None:intergenic
TCCAACCACAGCTTGAAGTA+TGG 0.389538 6_4:-4298848 None:intergenic
GTTCCTAAAATCGATTTAAA+GGG 0.391919 6_4:+4301115 Msa0972120:three_prime_UTR
GTCTAGATTGAAATCTTTGT+TGG 0.392244 6_4:+4295201 Msa0972120:CDS
TCTGAATACGGCTTAGGGTT+AGG 0.398206 6_4:+4300200 Msa0972120:CDS
TTTACATTCCTGAGATCAAC+TGG 0.399216 6_4:+4298980 Msa0972120:CDS
CTACAAGCTCAGTATGTATT+AGG 0.403828 6_4:-4299917 None:intergenic
GATACTTCTGAATACGGCTT+AGG 0.405573 6_4:+4300194 Msa0972120:CDS
CAAGTTCCTTGAAGGTGCTT+GGG 0.408141 6_4:+4299737 Msa0972120:CDS
GTTGTGTCTAAATTCTTAAA+GGG 0.412058 6_4:+4294592 Msa0972120:five_prime_UTR
TATGTTTGTGAGTTGGATTT+TGG 0.412528 6_4:+4301036 Msa0972120:three_prime_UTR
GAAGCTATGTATGCTGATTT+GGG 0.414121 6_4:+4298032 Msa0972120:CDS
TATACTCCTTTGGACCAATT+CGG 0.416178 6_4:-4300067 None:intergenic
AGATGAGTGAGAGGGCAATA+GGG 0.417071 6_4:-4299761 None:intergenic
TCATCAGCTAGCTGAGTATT+AGG 0.419468 6_4:-4295121 None:intergenic
ACAAAATGAGAGAAAATAGC+TGG 0.424343 6_4:-4299948 None:intergenic
CTATAAAGCCTATACTCCTT+TGG 0.426495 6_4:-4300077 None:intergenic
TTATTCGCTCTTCAACATTA+CGG 0.430060 6_4:+4297717 Msa0972120:CDS
TTGAAAGTGACTATAGAATT+GGG 0.431324 6_4:+4298680 Msa0972120:CDS
AGAAGGAACTTCAGAGTTGA+AGG 0.433884 6_4:+4300325 Msa0972120:CDS
TGATCTCAGGAATGTAAATC+TGG 0.433991 6_4:-4298975 None:intergenic
GTCCCCATCAATTGGCTCCT+CGG 0.437314 6_4:+4299852 Msa0972120:CDS
TTTAGGCTATGTTTGTGAGT+TGG 0.442067 6_4:+4301029 Msa0972120:three_prime_UTR
AAAATAAGGTCCCCATCAAT+TGG 0.444422 6_4:+4299844 Msa0972120:CDS
ATCAGCCAGGTCAACACAAC+AGG 0.447056 6_4:-4297768 None:intergenic
CAAAGTTTAGGAGTTGTGTA+TGG 0.447581 6_4:+4294866 Msa0972120:CDS
GTTTGTTGTTTGATGAATGA+TGG 0.447987 6_4:-4294139 None:intergenic
AAGCAAAACCGAAATTTAAG+AGG 0.449308 6_4:-4294544 None:intergenic
TCCCTCATCAAGTTCCTTGA+AGG 0.451186 6_4:+4299729 Msa0972120:CDS
ATTAAACTCCAGTTGATCTC+AGG 0.452305 6_4:-4298988 None:intergenic
GTCATGTATGTATGGCACTA+TGG 0.452362 6_4:+4299792 Msa0972120:CDS
TCGCACCTGTTGTGTTGACC+TGG 0.455170 6_4:+4297763 Msa0972120:CDS
CGAGGTGCAACATGCGGTAC+CGG 0.455761 6_4:-4300026 None:intergenic
GAGAGTGAGGTTTGTTGTGC+CGG 0.455765 6_4:+4300376 Msa0972120:CDS
TCTTTGATCCTAGCATATAT+GGG 0.460827 6_4:+4298625 Msa0972120:CDS
TTATCCATCCGCGGACTATC+CGG 0.461159 6_4:-4300395 None:intergenic
CTATATAACTGATATAGAAC+TGG 0.461279 6_4:-4300652 None:intergenic
TTGGTGAAAGGCAGGAAGAT+TGG 0.461658 6_4:-4299973 None:intergenic
AAAATACAAAACACAACAAA+AGG 0.463028 6_4:-4300776 None:intergenic
ATACATACTGAGCTTGTAGC+TGG 0.469483 6_4:+4299921 Msa0972120:CDS
CGATCCGATACTTCTGAATA+CGG 0.470393 6_4:+4300188 Msa0972120:CDS
AGGAGAAAGCTCTATGAGAA+AGG 0.470672 6_4:+4300909 Msa0972120:three_prime_UTR
GGAGGTTGGATGTCTTTGGG+AGG 0.473105 6_4:+4297897 Msa0972120:CDS
GAGGTTGGATGTCTTTGGGA+GGG 0.475607 6_4:+4297898 Msa0972120:CDS
ATACTTCTGAATACGGCTTA+GGG 0.478419 6_4:+4300195 Msa0972120:CDS
GTCTTTATAATATAATCCAT+TGG 0.480230 6_4:+4297808 Msa0972120:CDS
CGCGGATGGATAACGATACA+AGG 0.482140 6_4:+4300405 Msa0972120:CDS
TTACCTTAATTGGGTTCTTG+TGG 0.483761 6_4:-4294684 None:intergenic
GAAGAGAGTTTAGAGAATAG+TGG 0.484351 6_4:-4294320 None:intergenic
ATGAGGTGAGGTAAGGTTGT+TGG 0.485148 6_4:-4294293 None:intergenic
TTGGCATTAAAATTTATAAG+TGG 0.494210 6_4:-4294047 None:intergenic
TAAACCGAGGAGCCAATTGA+TGG 0.495328 6_4:-4299856 None:intergenic
CCCTCACAATTCCTAAAGTC+GGG 0.496921 6_4:-4299881 None:intergenic
AGTGTGTGTTAGGGGAAAAG+TGG 0.498875 6_4:-4294403 None:intergenic
TAGGGACCCAAGCACCTTCA+AGG 0.502646 6_4:-4299743 None:intergenic
AGTATGGCTATTGCAAGAAC+AGG 0.504838 6_4:-4298832 None:intergenic
GCCATACTTCAAGCTGTGGT+TGG 0.509620 6_4:+4298847 Msa0972120:CDS
ACTTTCAAGAGCATGATGCT+TGG 0.515268 6_4:-4298665 None:intergenic
ACCCTCACAATTCCTAAAGT+CGG 0.521240 6_4:-4299882 None:intergenic
GGAGAAAGCTCTATGAGAAA+GGG 0.522486 6_4:+4300910 Msa0972120:three_prime_UTR
GAATTGGTCCAAAGGAGTAT+AGG 0.523969 6_4:+4300069 Msa0972120:CDS
AGAAATTTGAACATGTAGCA+TGG 0.524142 6_4:-4297858 None:intergenic
CCTCGAGAAAGATTCTTAGT+TGG 0.524298 6_4:+4300044 Msa0972120:CDS
AAAAGACTCAATGGGGAGGT+TGG 0.524765 6_4:+4297883 Msa0972120:CDS
ACATAAATAAGGTATTTGTT+GGG 0.525874 6_4:+4300807 Msa0972120:three_prime_UTR
GATACAAAGATGACAGTTGT+CGG 0.526899 6_4:+4300236 Msa0972120:CDS
ATGAACACATATTTCAGAAG+TGG 0.531950 6_4:-4295013 None:intergenic
TTGATGAATGATGGTGATCA+AGG 0.537400 6_4:-4294130 None:intergenic
GGTAAACTTAAAGCATAAGT+TGG 0.537742 6_4:-4300578 None:intergenic
TTTCGAGATACCAAACGAAT+GGG 0.538551 6_4:+4299039 Msa0972120:CDS
TGCTTTGATTGGAACATGCA+TGG 0.540067 6_4:+4295261 Msa0972120:CDS
GTCTTATGTTGGCACAAAAG+TGG 0.542541 6_4:+4299645 Msa0972120:CDS
GGCTGTCATAACTGTCATGT+TGG 0.543353 6_4:+4299593 Msa0972120:CDS
GGAAGTCAAGCAATCATCAC+TGG 0.544014 6_4:+4298868 Msa0972120:CDS
ATTACCACTTGGTGAAAGGC+AGG 0.544803 6_4:-4299981 None:intergenic
ATATATGCTAGGATCAAAGA+AGG 0.545941 6_4:-4298622 None:intergenic
CTACATTTCATATTGATGGT+AGG 0.546388 6_4:-4300861 None:intergenic
CTCTAGTCATAGTCTTATGT+TGG 0.548736 6_4:+4299634 Msa0972120:CDS
GATAAACATGTGGATTCCAA+TGG 0.549988 6_4:-4297824 None:intergenic
CCCGACTTTAGGAATTGTGA+GGG 0.551295 6_4:+4299881 Msa0972120:CDS
AGAGAAATAGAGTGCTTCAA+TGG 0.551404 6_4:-4299703 None:intergenic
AGACTATGACTAGAGACATC+AGG 0.553221 6_4:-4299626 None:intergenic
AAACGAATGGGAAATGCAGC+AGG 0.554676 6_4:+4299051 Msa0972120:CDS
TAATACTCAGCTAGCTGATG+AGG 0.555276 6_4:+4295123 Msa0972120:CDS
AAACCGAGGAGCCAATTGAT+GGG 0.556269 6_4:-4299855 None:intergenic
GTGTTGAGAGCTGATGATAA+TGG 0.556623 6_4:+4295037 Msa0972120:CDS
TACAAAACACAACAAAAGGT+TGG 0.557321 6_4:-4300772 None:intergenic
CAGCTTGTCCCATATATGCT+AGG 0.557793 6_4:-4298633 None:intergenic
ATAGAATAATAATGAGTGGA+TGG 0.557833 6_4:-4294245 None:intergenic
CACCTTCAAGGAACTTGATG+AGG 0.559710 6_4:-4299731 None:intergenic
CACACATCATCGAAAATACA+TGG 0.562191 6_4:+4298952 Msa0972120:CDS
AAAAGAAGCTTGCACTTAGA+GGG 0.563514 6_4:-4300733 None:intergenic
GGAAGCAAAAGAAGCAGGAA+TGG 0.563580 6_4:+4300448 Msa0972120:CDS
ATTTCGAGATACCAAACGAA+TGG 0.567636 6_4:+4299038 Msa0972120:CDS
TATGTTGGCACAAAAGTGGT+TGG 0.567983 6_4:+4299649 Msa0972120:CDS
GAGGTGCAACATGCGGTACC+GGG 0.568930 6_4:-4300025 None:intergenic
CTTATGGAAGCAAAAGAAGC+AGG 0.569031 6_4:+4300443 Msa0972120:CDS
AGAAACATAGAGTGCTTCAA+AGG 0.569954 6_4:+4295224 Msa0972120:CDS
AAAGATTACCACTTGGTGAA+AGG 0.572569 6_4:-4299985 None:intergenic
TTTGGGGAAGCACCCTAAAG+AGG 0.573769 6_4:-4298917 None:intergenic
ATTGTGAGGGTTAAAGGTAT+CGG 0.574093 6_4:+4299894 Msa0972120:CDS
CTCAGAAGGCGTAAAGATGT+CGG 0.576972 6_4:+4300274 Msa0972120:CDS
TCTCTGCATCAAATCTGTCC+CGG 0.583855 6_4:+4300007 Msa0972120:CDS
TGGTGTGATGAGGTGAGGTA+AGG 0.584146 6_4:-4294300 None:intergenic
ACATGCATGGTTATTGGTGA+TGG 0.587513 6_4:+4295274 Msa0972120:CDS
TTTGTGCTGCTCTTTAGACA+TGG 0.588109 6_4:-4295829 None:intergenic
GAAACATAGAGTGCTTCAAA+GGG 0.590322 6_4:+4295225 Msa0972120:CDS
AGTACTGATGCATATCAGCC+AGG 0.591990 6_4:-4297781 None:intergenic
CAATAAGAAAGATGAGTGAG+AGG 0.593842 6_4:-4299770 None:intergenic
AATAGTGGTGTGATGAGGTG+AGG 0.594377 6_4:-4294305 None:intergenic
GATGGTGATCAAGGTGTGAG+AGG 0.598059 6_4:-4294121 None:intergenic
TCTTCCTGCCTTTCACCAAG+TGG 0.598208 6_4:+4299977 Msa0972120:CDS
AGTTGGCCGAATTGGTCCAA+AGG 0.599680 6_4:+4300061 Msa0972120:CDS
ATTAATAGAATAATAATGAG+TGG 0.599923 6_4:-4294249 None:intergenic
GCCCGACTTTAGGAATTGTG+AGG 0.602558 6_4:+4299880 Msa0972120:CDS
CATTACGGCACTCACCGCGT+TGG 0.608652 6_4:+4297732 Msa0972120:CDS
ACGCGAACGTGTATATATTG+TGG 0.610986 6_4:-4300962 None:intergenic
TAAGCCGTATTCAGAAGTAT+CGG 0.612521 6_4:-4300192 None:intergenic
CATGCATCTACCTTAGAGGT+AGG 0.616268 6_4:+4300602 Msa0972120:CDS
GCTGATGATAATGGTGAAGG+AGG 0.619763 6_4:+4295046 Msa0972120:CDS
CAAAATGAGAGAAAATAGCT+GGG 0.620563 6_4:-4299947 None:intergenic
AATAGCCATACTTCAAGCTG+TGG 0.620864 6_4:+4298843 Msa0972120:CDS
TGCAGAGAAAGATTACCACT+TGG 0.623854 6_4:-4299992 None:intergenic
ACTTCATCGTCAAACTCAGA+AGG 0.624387 6_4:+4300260 Msa0972120:CDS
TGATTCATGGAAGCATGTGT+TGG 0.625041 6_4:+4294832 Msa0972120:CDS
AATAAGAAAGATGAGTGAGA+GGG 0.625191 6_4:-4299769 None:intergenic
TATCATGTATAAGGATCACT+AGG 0.633571 6_4:-4300687 None:intergenic
TGACGTTCACAAAGATGACA+TGG 0.634747 6_4:+4300124 Msa0972120:CDS
TATAGGTGCATAGCACGGTA+CGG 0.636364 6_4:+4300095 Msa0972120:CDS
TAGAGAATAGTGGTGTGATG+AGG 0.637637 6_4:-4294310 None:intergenic
CTTGTATCGTTATCCATCCG+CGG 0.638392 6_4:-4300404 None:intergenic
TTCTTAAGAAGAAACTCTAG+AGG 0.638729 6_4:+4300554 Msa0972120:CDS
ACCTTCAAGGAACTTGATGA+GGG 0.639101 6_4:-4299730 None:intergenic
TCCTTATACATGATAAATGG+CGG 0.643687 6_4:+4300695 Msa0972120:three_prime_UTR
GACTAGAGACATCAGGCATG+TGG 0.644264 6_4:-4299619 None:intergenic
ATTTGGTTATGCAGATGTGG+AGG 0.646842 6_4:+4297665 Msa0972120:intron
GGCTTTATAGGTGCATAGCA+CGG 0.649200 6_4:+4300090 Msa0972120:CDS
ACCTCTAAGGTAGATGCATG+AGG 0.653091 6_4:-4300599 None:intergenic
GAGAGAGCTTGATAAACATG+TGG 0.655677 6_4:-4297834 None:intergenic
AGAGCTGATGATAATGGTGA+AGG 0.657212 6_4:+4295043 Msa0972120:CDS
AACCGAGGAGCCAATTGATG+GGG 0.660192 6_4:-4299854 None:intergenic
CTTTCTCGAGGTGCAACATG+CGG 0.663477 6_4:-4300032 None:intergenic
CGTATTCAGAAGTATCGGAT+CGG 0.663509 6_4:-4300187 None:intergenic
TTGTTGTGCCGGATAGTCCG+CGG 0.672753 6_4:+4300387 Msa0972120:CDS
TGTCATCTTTGTGAACGTCA+CGG 0.676065 6_4:-4300121 None:intergenic
TATATGCTAGGATCAAAGAA+GGG 0.688830 6_4:-4298621 None:intergenic
CCAACTAAGAATCTTTCTCG+AGG 0.700179 6_4:-4300044 None:intergenic
GGATTTGGCACAGTACACAA+TGG 0.710369 6_4:+4295144 Msa0972120:CDS
GCGGATGGATAACGATACAA+GGG 0.712215 6_4:+4300406 Msa0972120:CDS
GTGCGAAAAGACATCCAACG+CGG 0.829929 6_4:-4297746 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAGTAACTTTTATT+TGG - chr6_4:4294069-4294088 None:intergenic 10.0%
!!! TTTTATATTATTATAATGAG+GGG - chr6_4:4294436-4294455 None:intergenic 10.0%
!! AAAGATAATTTAAAGATAAT+AGG + chr6_4:4296515-4296534 Msa0972120:intron 10.0%
!! ATAAATAATGATTATCTATA+TGG + chr6_4:4296971-4296990 Msa0972120:intron 10.0%
!! AAAATTATTTCATAAAAAGA+TGG - chr6_4:4299082-4299101 None:intergenic 10.0%
!!! TTTTTTTCTTAAATCATTAT+TGG + chr6_4:4299300-4299319 Msa0972120:intron 10.0%
!! TAAAATTTATAAGTGGTTAT+GGG - chr6_4:4294043-4294062 None:intergenic 15.0%
!! TTAAAATTTATAAGTGGTTA+TGG - chr6_4:4294044-4294063 None:intergenic 15.0%
!! ATTAATAGAATAATAATGAG+TGG - chr6_4:4294252-4294271 None:intergenic 15.0%
!!! AAAAGTGATTTTTTTGTTAA+TGG - chr6_4:4294522-4294541 None:intergenic 15.0%
!! AAAACAAAAAAAAAACATCA+TGG - chr6_4:4294796-4294815 None:intergenic 15.0%
!!! TTTGTTTTTTTGTTTTTTGT+AGG + chr6_4:4294808-4294827 Msa0972120:intron 15.0%
!!! TATTTTAATCAACTTAACAT+TGG - chr6_4:4296703-4296722 None:intergenic 15.0%
!! ATAACTTATAATCTAATGAA+AGG - chr6_4:4296810-4296829 None:intergenic 15.0%
!! CATTATTTATAAATCAAAGT+GGG - chr6_4:4296961-4296980 None:intergenic 15.0%
!! TCATTATTTATAAATCAAAG+TGG - chr6_4:4296962-4296981 None:intergenic 15.0%
!!! AATTATGACTTGATAATTTA+TGG + chr6_4:4297185-4297204 Msa0972120:intron 15.0%
!! AAAATATATATTAACTACCA+TGG - chr6_4:4297224-4297243 None:intergenic 15.0%
!! AAGAAAGTTGTTATAAATTA+TGG + chr6_4:4300524-4300543 Msa0972120:CDS 15.0%
!! TTGGCATTAAAATTTATAAG+TGG - chr6_4:4294050-4294069 None:intergenic 20.0%
!!! ACTTTTTTCCTCTTAAATTT+CGG + chr6_4:4294536-4294555 Msa0972120:five_prime_UTR 20.0%
!!! TTTTGACTTGTTTTTTCAAT+TGG + chr6_4:4294569-4294588 Msa0972120:five_prime_UTR 20.0%
!!! TTTGACTTGTTTTTTCAATT+GGG + chr6_4:4294570-4294589 Msa0972120:five_prime_UTR 20.0%
!!! AAAACATCAAATTTTCATCA+TGG + chr6_4:4294645-4294664 Msa0972120:exon 20.0%
!!! GTCTAGTTTTTATAAAATCA+CGG + chr6_4:4295662-4295681 Msa0972120:intron 20.0%
!!! TTTATATCAGGTTTTAATCT+TGG + chr6_4:4295730-4295749 Msa0972120:intron 20.0%
!!! TATGAGTCAATGTTTTAAAA+AGG + chr6_4:4295932-4295951 Msa0972120:intron 20.0%
!!! TCAATGTTTTAAAAAGGAAT+TGG + chr6_4:4295938-4295957 Msa0972120:intron 20.0%
!!! TTTAAGCTTTAGTTACTATT+GGG + chr6_4:4296149-4296168 Msa0972120:intron 20.0%
!! AGAGTAAATATCAAAATGTT+TGG + chr6_4:4296365-4296384 Msa0972120:intron 20.0%
!! ATAGGATTAATAGTTTGATT+TGG + chr6_4:4296533-4296552 Msa0972120:intron 20.0%
!! TTTAAATTAGTGGAAGAAAA+TGG + chr6_4:4296637-4296656 Msa0972120:intron 20.0%
!! GATTAAAATAATCAAACATG+TGG + chr6_4:4296713-4296732 Msa0972120:intron 20.0%
!! ATGAAAGGTTAACTTTATAA+AGG - chr6_4:4296795-4296814 None:intergenic 20.0%
!!! CATTGATTGAATACAAAATT+AGG + chr6_4:4296896-4296915 Msa0972120:intron 20.0%
!!! AATATATAAAAGTGTAATCG+TGG - chr6_4:4297056-4297075 None:intergenic 20.0%
!! AACTTGAAAACTAAAAAGTT+AGG - chr6_4:4297081-4297100 None:intergenic 20.0%
!!! AGTTTGTTGAAGAAATATAT+AGG - chr6_4:4297584-4297603 None:intergenic 20.0%
!! GTCTTTATAATATAATCCAT+TGG + chr6_4:4297808-4297827 Msa0972120:CDS 20.0%
!! TGTACATATCAAAGTAAATT+TGG - chr6_4:4298330-4298349 None:intergenic 20.0%
!!! TGAGTATGATTTTATTTTGA+AGG - chr6_4:4298520-4298539 None:intergenic 20.0%
!!! CATCTAAGTTTTACTAAAAA+AGG - chr6_4:4298811-4298830 None:intergenic 20.0%
!!! CTTTTTTAGTAAAACTTAGA+TGG + chr6_4:4298809-4298828 Msa0972120:intron 20.0%
!! ATATACCTTAAGCATATATT+TGG + chr6_4:4299393-4299412 Msa0972120:intron 20.0%
!! GCGTATAATTATATAAACTT+TGG + chr6_4:4299415-4299434 Msa0972120:intron 20.0%
!! ACTAACAATTCTATTCTTAT+AGG + chr6_4:4299464-4299483 Msa0972120:intron 20.0%
!! CTAACAATTCTATTCTTATA+GGG + chr6_4:4299465-4299484 Msa0972120:intron 20.0%
!! GATAATAATTCTCAAATAGA+AGG + chr6_4:4300308-4300327 Msa0972120:CDS 20.0%
!! AAAATACAAAACACAACAAA+AGG - chr6_4:4300779-4300798 None:intergenic 20.0%
!!! TACATAAATAAGGTATTTGT+TGG + chr6_4:4300806-4300825 Msa0972120:three_prime_UTR 20.0%
!!! ACATAAATAAGGTATTTGTT+GGG + chr6_4:4300807-4300826 Msa0972120:three_prime_UTR 20.0%
!!! TATGAAGTGTGAATTTTTTT+AGG + chr6_4:4301012-4301031 Msa0972120:three_prime_UTR 20.0%
! ATAGAATAATAATGAGTGGA+TGG - chr6_4:4294248-4294267 None:intergenic 25.0%
! GTTGTGTCTAAATTCTTAAA+GGG + chr6_4:4294592-4294611 Msa0972120:five_prime_UTR 25.0%
! GATACAAATGAAGAAATCTT+TGG + chr6_4:4294953-4294972 Msa0972120:CDS 25.0%
!! CTGTTGATAAGAAAAATGTT+GGG + chr6_4:4295179-4295198 Msa0972120:CDS 25.0%
!!! GGTACTTTTTTTGTGATTTT+TGG + chr6_4:4295319-4295338 Msa0972120:intron 25.0%
!! TTTGAGTTTCAACAAAATCA+CGG + chr6_4:4295428-4295447 Msa0972120:intron 25.0%
!!! GTGTTTTTTTTCTCTCAAAA+AGG - chr6_4:4295864-4295883 None:intergenic 25.0%
!! ATAATCTAGCTTCTATTCTA+GGG + chr6_4:4296124-4296143 Msa0972120:intron 25.0%
!! GTTTAAGCTTTAGTTACTAT+TGG + chr6_4:4296148-4296167 Msa0972120:intron 25.0%
!! TTAAGCTTTAGTTACTATTG+GGG + chr6_4:4296150-4296169 Msa0972120:intron 25.0%
! CCAAGTTGTGTATTAAAAAT+TGG - chr6_4:4296234-4296253 None:intergenic 25.0%
!! CCAATTTTTAATACACAACT+TGG + chr6_4:4296231-4296250 Msa0972120:intron 25.0%
!!! ATTTTGAAGTTGACAGAATT+AGG - chr6_4:4296997-4297016 None:intergenic 25.0%
!! ACATTTTGCCAAAAAAAGTT+AGG - chr6_4:4297160-4297179 None:intergenic 25.0%
! TCAAACACTAATTGACATTT+AGG + chr6_4:4297279-4297298 Msa0972120:intron 25.0%
!! TGTTTTCATATAAGCTATTC+TGG - chr6_4:4297430-4297449 None:intergenic 25.0%
! AAAAGCAAATGTACAACAAA+TGG - chr6_4:4297622-4297641 None:intergenic 25.0%
!! AATTTCTGAAAAAGACTCAA+TGG + chr6_4:4297874-4297893 Msa0972120:CDS 25.0%
!! ATTTCTGAAAAAGACTCAAT+GGG + chr6_4:4297875-4297894 Msa0972120:CDS 25.0%
! TTATCTGTATCTGATATTGT+TGG + chr6_4:4297991-4298010 Msa0972120:intron 25.0%
! CTTTAATCAATTGTCTATTC+AGG + chr6_4:4298058-4298077 Msa0972120:CDS 25.0%
! AAAAATGAAGCCTTCTTATT+TGG + chr6_4:4298087-4298106 Msa0972120:intron 25.0%
! ACATTGTAATCAAAATTGTG+AGG + chr6_4:4298111-4298130 Msa0972120:intron 25.0%
! CATTGTAATCAAAATTGTGA+GGG + chr6_4:4298112-4298131 Msa0972120:intron 25.0%
! TTCTAAGTGTATGTTTGTAT+TGG + chr6_4:4298160-4298179 Msa0972120:intron 25.0%
! TTGAAAGTGACTATAGAATT+GGG + chr6_4:4298680-4298699 Msa0972120:CDS 25.0%
! ATTTGCTTTCTATTGTTCTT+TGG + chr6_4:4299678-4299697 Msa0972120:CDS 25.0%
! TTCTTATTGTCATGTATGTA+TGG + chr6_4:4299784-4299803 Msa0972120:CDS 25.0%
!! ATCTATCATGTCTAAGTTTT+TGG + chr6_4:4300629-4300648 Msa0972120:exon 25.0%
! CTATATAACTGATATAGAAC+TGG - chr6_4:4300655-4300674 None:intergenic 25.0%
! TGATCCTTATACATGATAAA+TGG + chr6_4:4300692-4300711 Msa0972120:three_prime_UTR 25.0%
!! TGTTGTGTTTTGTATTTTCT+TGG + chr6_4:4300781-4300800 Msa0972120:three_prime_UTR 25.0%
!! TTTCTTGGTGTACATAAATA+AGG + chr6_4:4300796-4300815 Msa0972120:three_prime_UTR 25.0%
! GTATCTACATTTCATATTGA+TGG - chr6_4:4300868-4300887 None:intergenic 25.0%
!!! GAAGAGTATTTTGAATGAAA+AGG + chr6_4:4300889-4300908 Msa0972120:three_prime_UTR 25.0%
!! TGTTCCTAAAATCGATTTAA+AGG + chr6_4:4301114-4301133 Msa0972120:three_prime_UTR 25.0%
!! GTTCCTAAAATCGATTTAAA+GGG + chr6_4:4301115-4301134 Msa0972120:three_prime_UTR 25.0%
!! GTTTGTTGTTTGATGAATGA+TGG - chr6_4:4294142-4294161 None:intergenic 30.0%
!!! TTGGAGAAAGTTTTGAGAAA+TGG - chr6_4:4294277-4294296 None:intergenic 30.0%
! GAAAAAAAAGTGTGTGTTAG+GGG - chr6_4:4294414-4294433 None:intergenic 30.0%
! GGAAAAAAAAGTGTGTGTTA+GGG - chr6_4:4294415-4294434 None:intergenic 30.0%
AAGCAAAACCGAAATTTAAG+AGG - chr6_4:4294547-4294566 None:intergenic 30.0%
GGTTGTGTCTAAATTCTTAA+AGG + chr6_4:4294591-4294610 Msa0972120:five_prime_UTR 30.0%
CTTAAAGGGTCATCTAAAAA+TGG + chr6_4:4294606-4294625 Msa0972120:five_prime_UTR 30.0%
GTTTCATGCTTACCTTAATT+GGG - chr6_4:4294696-4294715 None:intergenic 30.0%
TGTTTCATGCTTACCTTAAT+TGG - chr6_4:4294697-4294716 None:intergenic 30.0%
!!! GTTTTTTGTAGGATGATTCA+TGG + chr6_4:4294819-4294838 Msa0972120:intron 30.0%
!! GTTTTGGCATATCAAAGTTT+AGG + chr6_4:4294854-4294873 Msa0972120:CDS 30.0%
! GTGCTTTTGTATACATATAG+TGG - chr6_4:4294908-4294927 None:intergenic 30.0%
! GTGTATTGTCTTTTGTGTTT+TGG + chr6_4:4294975-4294994 Msa0972120:CDS 30.0%
ATGAACACATATTTCAGAAG+TGG - chr6_4:4295016-4295035 None:intergenic 30.0%
! GCTGTTGATAAGAAAAATGT+TGG + chr6_4:4295178-4295197 Msa0972120:CDS 30.0%
GTCTAGATTGAAATCTTTGT+TGG + chr6_4:4295201-4295220 Msa0972120:CDS 30.0%
!! AAAAAAGTACCAGAAATTGC+TGG - chr6_4:4295310-4295329 None:intergenic 30.0%
TGTAACTTCTGTCAAAATCA+TGG - chr6_4:4295406-4295425 None:intergenic 30.0%
ACATGCACAAAACATATGTT+TGG - chr6_4:4295484-4295503 None:intergenic 30.0%
! ACATATGTTTTGTGCATGTT+TGG + chr6_4:4295485-4295504 Msa0972120:intron 30.0%
ATAGTGAGTTTGAAGAAATC+AGG + chr6_4:4295512-4295531 Msa0972120:intron 30.0%
TAGTGAGTTTGAAGAAATCA+GGG + chr6_4:4295513-4295532 Msa0972120:intron 30.0%
CGGTAAATTTGACAGAATTA+CGG - chr6_4:4295695-4295714 None:intergenic 30.0%
ATAAACCATGTTTGGATTGA+CGG - chr6_4:4295715-4295734 None:intergenic 30.0%
ATCCAAACATGGTTTATATC+AGG + chr6_4:4295718-4295737 Msa0972120:intron 30.0%
AACCTGATATAAACCATGTT+TGG - chr6_4:4295723-4295742 None:intergenic 30.0%
!! ATATCAGGTTTTAATCTTGG+TGG + chr6_4:4295733-4295752 Msa0972120:intron 30.0%
CTCATAGTTTGAAGAAGAAA+TGG - chr6_4:4295918-4295937 None:intergenic 30.0%
GATTTAAAAATCGACCAAGA+CGG - chr6_4:4296082-4296101 None:intergenic 30.0%
! GATAATCTAGCTTCTATTCT+AGG + chr6_4:4296123-4296142 Msa0972120:intron 30.0%
! TAAGCTTTAGTTACTATTGG+GGG + chr6_4:4296151-4296170 Msa0972120:intron 30.0%
! GGTATTTGTTGCTAAGAAAT+AGG + chr6_4:4296172-4296191 Msa0972120:intron 30.0%
!!! CAATTTTTTCCAACCTAATC+AGG - chr6_4:4296210-4296229 None:intergenic 30.0%
TTGGTATCATGAACAATTCT+TGG + chr6_4:4296384-4296403 Msa0972120:intron 30.0%
TGGTATCATGAACAATTCTT+GGG + chr6_4:4296385-4296404 Msa0972120:intron 30.0%
TACAAGATACAGAAACAATG+AGG - chr6_4:4296451-4296470 None:intergenic 30.0%
ATTGCATTTGTCTTAGTCAA+TGG + chr6_4:4296480-4296499 Msa0972120:intron 30.0%
CTAATTTAAACAGCATGCAT+AGG - chr6_4:4296627-4296646 None:intergenic 30.0%
! ATGCATGCTGTTTAAATTAG+TGG + chr6_4:4296627-4296646 Msa0972120:intron 30.0%
! TCAACTTAACATTGGTTACA+TGG - chr6_4:4296695-4296714 None:intergenic 30.0%
!! AGTTATAATATAAAGCACCG+TGG + chr6_4:4296824-4296843 Msa0972120:intron 30.0%
GTACATGACTAATCTAATAG+TGG - chr6_4:4296926-4296945 None:intergenic 30.0%
!!! CACTGTTACCTAACTTTTTT+TGG + chr6_4:4297149-4297168 Msa0972120:intron 30.0%
TCAAATAAACCAATCCAATG+CGG - chr6_4:4297306-4297325 None:intergenic 30.0%
GAGCTTATGAAAACAACTAA+TGG + chr6_4:4297366-4297385 Msa0972120:intron 30.0%
! ATAAGCTATTCTGGAGATTA+TGG - chr6_4:4297421-4297440 None:intergenic 30.0%
AATTAAGATGTTGTCCAAAC+AGG + chr6_4:4297557-4297576 Msa0972120:intron 30.0%
ATTAAGATGTTGTCCAAACA+GGG + chr6_4:4297558-4297577 Msa0972120:intron 30.0%
! TTTTGTTCTTACTGTTACAC+TGG + chr6_4:4297638-4297657 Msa0972120:intron 30.0%
TTATTCGCTCTTCAACATTA+CGG + chr6_4:4297717-4297736 Msa0972120:CDS 30.0%
AGAAATTTGAACATGTAGCA+TGG - chr6_4:4297861-4297880 None:intergenic 30.0%
! TTTCTGAAAAAGACTCAATG+GGG + chr6_4:4297876-4297895 Msa0972120:CDS 30.0%
TCTATTGTGTATAACAGGTA+TGG + chr6_4:4297923-4297942 Msa0972120:intron 30.0%
TTACAATGTGCCAAATAAGA+AGG - chr6_4:4298100-4298119 None:intergenic 30.0%
AATTGTGAGGGAATATTAGA+TGG + chr6_4:4298124-4298143 Msa0972120:intron 30.0%
TAAGTGTATGTTTGTATTGG+CGG + chr6_4:4298163-4298182 Msa0972120:intron 30.0%
! CGTAGCTTTTGTCAAAATTA+CGG + chr6_4:4298240-4298259 Msa0972120:intron 30.0%
CTTATGATTTAGTGCATGTT+TGG - chr6_4:4298301-4298320 None:intergenic 30.0%
TACTCAACAATTTGCAGAAA+TGG + chr6_4:4298534-4298553 Msa0972120:intron 30.0%
TATATGCTAGGATCAAAGAA+GGG - chr6_4:4298624-4298643 None:intergenic 30.0%
ATATATGCTAGGATCAAAGA+AGG - chr6_4:4298625-4298644 None:intergenic 30.0%
TTCTTTGATCCTAGCATATA+TGG + chr6_4:4298624-4298643 Msa0972120:CDS 30.0%
TCTTTGATCCTAGCATATAT+GGG + chr6_4:4298625-4298644 Msa0972120:CDS 30.0%
CTTGAAAGTGACTATAGAAT+TGG + chr6_4:4298679-4298698 Msa0972120:CDS 30.0%
!!! TCAAAGTTTTGAGATGCAAT+TGG - chr6_4:4299117-4299136 None:intergenic 30.0%
CAAAACTTTGACTACATTGA+TGG + chr6_4:4299126-4299145 Msa0972120:intron 30.0%
ATACGCCAAATATATGCTTA+AGG - chr6_4:4299401-4299420 None:intergenic 30.0%
TTTGCTTTCTTTCGATAAAC+AGG + chr6_4:4299567-4299586 Msa0972120:intron 30.0%
AATAAGAAAGATGAGTGAGA+GGG - chr6_4:4299772-4299791 None:intergenic 30.0%
CAAAATGAGAGAAAATAGCT+GGG - chr6_4:4299950-4299969 None:intergenic 30.0%
ACAAAATGAGAGAAAATAGC+TGG - chr6_4:4299951-4299970 None:intergenic 30.0%
TTCTTAAGAAGAAACTCTAG+AGG + chr6_4:4300554-4300573 Msa0972120:CDS 30.0%
GGTAAACTTAAAGCATAAGT+TGG - chr6_4:4300581-4300600 None:intergenic 30.0%
TATCATGTATAAGGATCACT+AGG - chr6_4:4300690-4300709 None:intergenic 30.0%
TCCTTATACATGATAAATGG+CGG + chr6_4:4300695-4300714 Msa0972120:three_prime_UTR 30.0%
TACAAAACACAACAAAAGGT+TGG - chr6_4:4300775-4300794 None:intergenic 30.0%
GAAAAAGAGCTTGATATTGA+GGG - chr6_4:4300839-4300858 None:intergenic 30.0%
TGAAAAAGAGCTTGATATTG+AGG - chr6_4:4300840-4300859 None:intergenic 30.0%
! CTACATTTCATATTGATGGT+AGG - chr6_4:4300864-4300883 None:intergenic 30.0%
!! TATGTTTGTGAGTTGGATTT+TGG + chr6_4:4301036-4301055 Msa0972120:three_prime_UTR 30.0%
!! TCTCCCTTTAAATCGATTTT+AGG - chr6_4:4301121-4301140 None:intergenic 30.0%
!!! GGTTTTGGGTTGATTGTATT+TGG - chr6_4:4294103-4294122 None:intergenic 35.0%
! TTGATGAATGATGGTGATCA+AGG - chr6_4:4294133-4294152 None:intergenic 35.0%
GAAGAGAGTTTAGAGAATAG+TGG - chr6_4:4294323-4294342 None:intergenic 35.0%
! GGGAAAAAAAAGTGTGTGTT+AGG - chr6_4:4294416-4294435 None:intergenic 35.0%
TTACCTTAATTGGGTTCTTG+TGG - chr6_4:4294687-4294706 None:intergenic 35.0%
CAAAGTTTAGGAGTTGTGTA+TGG + chr6_4:4294866-4294885 Msa0972120:CDS 35.0%
!!! ATACAAAAGCACTTTTGCTG+AGG + chr6_4:4294916-4294935 Msa0972120:CDS 35.0%
! AGAAACATAGAGTGCTTCAA+AGG + chr6_4:4295224-4295243 Msa0972120:CDS 35.0%
! GAAACATAGAGTGCTTCAAA+GGG + chr6_4:4295225-4295244 Msa0972120:CDS 35.0%
CTTCTTGTTCTTGCTTTGAT+TGG + chr6_4:4295250-4295269 Msa0972120:CDS 35.0%
ATTGGAACATGCATGGTTAT+TGG + chr6_4:4295268-4295287 Msa0972120:CDS 35.0%
AGTAGTAGTTTCTGCATGTT+TGG + chr6_4:4295345-4295364 Msa0972120:intron 35.0%
TAGTTTCTGCATGTTTGGAT+TGG + chr6_4:4295350-4295369 Msa0972120:intron 35.0%
AACTTCTGTCAAAATCATGG+TGG - chr6_4:4295403-4295422 None:intergenic 35.0%
CAAGTTTGACAAAATCACAG+TGG - chr6_4:4295456-4295475 None:intergenic 35.0%
! CACTGTGATTTTGTCAAACT+TGG + chr6_4:4295454-4295473 Msa0972120:intron 35.0%
ATTTACCGTCAATCCAAACA+TGG + chr6_4:4295707-4295726 Msa0972120:intron 35.0%
GGCAGAAAAAACTGCAAAAA+TGG - chr6_4:4295790-4295809 None:intergenic 35.0%
AAAGGAATTGGAGATCGAAA+CGG + chr6_4:4295950-4295969 Msa0972120:intron 35.0%
TTATTTAAGTGGTTCGATCG+TGG - chr6_4:4296017-4296036 None:intergenic 35.0%
CCATGGTTCAGTTATTTAAG+TGG - chr6_4:4296028-4296047 None:intergenic 35.0%
CCACTTAAATAACTGAACCA+TGG + chr6_4:4296025-4296044 Msa0972120:intron 35.0%
! TTGCTAAGAAATAGGCCTTT+TGG + chr6_4:4296180-4296199 Msa0972120:intron 35.0%
ACCTAATCAGGTTATCCAAA+AGG - chr6_4:4296198-4296217 None:intergenic 35.0%
TTTGGATAACCTGATTAGGT+TGG + chr6_4:4296198-4296217 Msa0972120:intron 35.0%
TAGGTAACACGAAAAGGAAA+TGG - chr6_4:4296608-4296627 None:intergenic 35.0%
CAGAAAAGTGACTTTGACAT+TGG - chr6_4:4296667-4296686 None:intergenic 35.0%
!! TAATATAAAGCACCGTGGTT+TGG + chr6_4:4296829-4296848 Msa0972120:intron 35.0%
ACTTCATTCATAAATCCCTG+TGG + chr6_4:4296857-4296876 Msa0972120:intron 35.0%
TAAATCCCTGTGGATAAATC+TGG + chr6_4:4296867-4296886 Msa0972120:intron 35.0%
! CTTTTCCAGATTTATCCACA+GGG - chr6_4:4296875-4296894 None:intergenic 35.0%
! ACTTTTCCAGATTTATCCAC+AGG - chr6_4:4296876-4296895 None:intergenic 35.0%
! AACTACCATGGTAACTTTTC+AGG - chr6_4:4297212-4297231 None:intergenic 35.0%
AGAAATATATAGGCCCTGTT+TGG - chr6_4:4297574-4297593 None:intergenic 35.0%
ACTGTTACACTGGTGTAATT+TGG + chr6_4:4297648-4297667 Msa0972120:intron 35.0%
GTAATTTGGTTATGCAGATG+TGG + chr6_4:4297662-4297681 Msa0972120:intron 35.0%
CTGATATGCATCAGTACTAT+TGG + chr6_4:4297786-4297805 Msa0972120:CDS 35.0%
GATAAACATGTGGATTCCAA+TGG - chr6_4:4297827-4297846 None:intergenic 35.0%
GGGATTCTATTGTGTATAAC+AGG + chr6_4:4297918-4297937 Msa0972120:CDS 35.0%
TAACAGGTATGGAGTATATG+CGG + chr6_4:4297934-4297953 Msa0972120:intron 35.0%
!! TATTGTTGGTTCTATGTTGC+AGG + chr6_4:4298005-4298024 Msa0972120:intron 35.0%
TTAGTGCATGTTTGGATTGA+TGG - chr6_4:4298293-4298312 None:intergenic 35.0%
TTACAAGATCATCGTCACAA+TGG - chr6_4:4298420-4298439 None:intergenic 35.0%
ATCAAACAGTGTTCCTCTTT+AGG + chr6_4:4298904-4298923 Msa0972120:CDS 35.0%
TCAAACAGTGTTCCTCTTTA+GGG + chr6_4:4298905-4298924 Msa0972120:CDS 35.0%
!!! TGTGAACGATTTTGACTTTG+GGG - chr6_4:4298936-4298955 None:intergenic 35.0%
!!! GTGTGAACGATTTTGACTTT+GGG - chr6_4:4298937-4298956 None:intergenic 35.0%
!!! TGTGTGAACGATTTTGACTT+TGG - chr6_4:4298938-4298957 None:intergenic 35.0%
CACACATCATCGAAAATACA+TGG + chr6_4:4298952-4298971 Msa0972120:CDS 35.0%
TGATCTCAGGAATGTAAATC+TGG - chr6_4:4298978-4298997 None:intergenic 35.0%
TTTACATTCCTGAGATCAAC+TGG + chr6_4:4298980-4298999 Msa0972120:CDS 35.0%
ATTAAACTCCAGTTGATCTC+AGG - chr6_4:4298991-4299010 None:intergenic 35.0%
!! CTTTGTCTTGCTGTTACAAT+TGG + chr6_4:4299015-4299034 Msa0972120:CDS 35.0%
ATTTCGAGATACCAAACGAA+TGG + chr6_4:4299038-4299057 Msa0972120:CDS 35.0%
TTTCGAGATACCAAACGAAT+GGG + chr6_4:4299039-4299058 Msa0972120:CDS 35.0%
! ATGCCTTCAATCTGAAGTAT+TGG - chr6_4:4299210-4299229 None:intergenic 35.0%
CTATGTCTCAGTGTCATATT+CGG + chr6_4:4299326-4299345 Msa0972120:intron 35.0%
TTTCTTTCGATAAACAGGTC+TGG + chr6_4:4299572-4299591 Msa0972120:intron 35.0%
!! CTCTAGTCATAGTCTTATGT+TGG + chr6_4:4299634-4299653 Msa0972120:CDS 35.0%
! AGAGAAATAGAGTGCTTCAA+TGG - chr6_4:4299706-4299725 None:intergenic 35.0%
CAATAAGAAAGATGAGTGAG+AGG - chr6_4:4299773-4299792 None:intergenic 35.0%
CGAGTTCGATGTTCAAAATA+AGG + chr6_4:4299830-4299849 Msa0972120:CDS 35.0%
AAAATAAGGTCCCCATCAAT+TGG + chr6_4:4299844-4299863 Msa0972120:CDS 35.0%
TTAGGAATTGTGAGGGTTAA+AGG + chr6_4:4299888-4299907 Msa0972120:CDS 35.0%
! ATTGTGAGGGTTAAAGGTAT+CGG + chr6_4:4299894-4299913 Msa0972120:CDS 35.0%
CTACAAGCTCAGTATGTATT+AGG - chr6_4:4299920-4299939 None:intergenic 35.0%
! AAAGATTACCACTTGGTGAA+AGG - chr6_4:4299988-4300007 None:intergenic 35.0%
TATACTCCTTTGGACCAATT+CGG - chr6_4:4300070-4300089 None:intergenic 35.0%
CTATAAAGCCTATACTCCTT+TGG - chr6_4:4300080-4300099 None:intergenic 35.0%
! CAAAGGAGTATAGGCTTTAT+AGG + chr6_4:4300078-4300097 Msa0972120:CDS 35.0%
! TAAGCCGTATTCAGAAGTAT+CGG - chr6_4:4300195-4300214 None:intergenic 35.0%
ATACTTCTGAATACGGCTTA+GGG + chr6_4:4300195-4300214 Msa0972120:CDS 35.0%
GATACAAAGATGACAGTTGT+CGG + chr6_4:4300236-4300255 Msa0972120:CDS 35.0%
!!! ACTCTCTTCTTCACTTTTTC+GGG - chr6_4:4300362-4300381 None:intergenic 35.0%
!!! CACTCTCTTCTTCACTTTTT+CGG - chr6_4:4300363-4300382 None:intergenic 35.0%
AAAAAGTGAAGAAGAGAGTG+AGG + chr6_4:4300363-4300382 Msa0972120:CDS 35.0%
TCATATGTGAGAGCAAAAAG+AGG + chr6_4:4300488-4300507 Msa0972120:CDS 35.0%
ATAGATCATACCTACCTCTA+AGG - chr6_4:4300615-4300634 None:intergenic 35.0%
AAAAGAAGCTTGCACTTAGA+GGG - chr6_4:4300736-4300755 None:intergenic 35.0%
AAAAAGAAGCTTGCACTTAG+AGG - chr6_4:4300737-4300756 None:intergenic 35.0%
TTTAGGCTATGTTTGTGAGT+TGG + chr6_4:4301029-4301048 Msa0972120:three_prime_UTR 35.0%
!! TTTGTGAGTTGGATTTTGGA+AGG + chr6_4:4301040-4301059 Msa0972120:three_prime_UTR 35.0%
! ATCAAGGTGTGAGAGGTTTT+GGG - chr6_4:4294117-4294136 None:intergenic 40.0%
TAGAGAATAGTGGTGTGATG+AGG - chr6_4:4294313-4294332 None:intergenic 40.0%
CTGCATTTGTCTCTCTTTCT+TGG + chr6_4:4294375-4294394 Msa0972120:five_prime_UTR 40.0%
GATCCACAAGAACCCAATTA+AGG + chr6_4:4294681-4294700 Msa0972120:CDS 40.0%
! TGATTCATGGAAGCATGTGT+TGG + chr6_4:4294832-4294851 Msa0972120:CDS 40.0%
!!! ATGGAAGCATGTGTTGGTTT+TGG + chr6_4:4294838-4294857 Msa0972120:CDS 40.0%
GTGTTGAGAGCTGATGATAA+TGG + chr6_4:4295037-4295056 Msa0972120:CDS 40.0%
!! AGAGCTGATGATAATGGTGA+AGG + chr6_4:4295043-4295062 Msa0972120:CDS 40.0%
TCATCAGCTAGCTGAGTATT+AGG - chr6_4:4295124-4295143 None:intergenic 40.0%
TAATACTCAGCTAGCTGATG+AGG + chr6_4:4295123-4295142 Msa0972120:CDS 40.0%
TGCTTTGATTGGAACATGCA+TGG + chr6_4:4295261-4295280 Msa0972120:CDS 40.0%
ACATGCATGGTTATTGGTGA+TGG + chr6_4:4295274-4295293 Msa0972120:CDS 40.0%
TGAGTTTGAAGAAATCAGGG+TGG + chr6_4:4295516-4295535 Msa0972120:intron 40.0%
!!! GCAGTTTTTTCTGCCATATC+AGG + chr6_4:4295795-4295814 Msa0972120:intron 40.0%
!! GGAAAGCTCTAAACCTGATA+TGG - chr6_4:4295811-4295830 None:intergenic 40.0%
! TTTGTGCTGCTCTTTAGACA+TGG - chr6_4:4295832-4295851 None:intergenic 40.0%
AGAGTGGTTCAAGGTTCAAT+CGG + chr6_4:4296051-4296070 Msa0972120:intron 40.0%
! GCCTTTTGGATAACCTGATT+AGG + chr6_4:4296194-4296213 Msa0972120:intron 40.0%
CATGCATAGGTAACACGAAA+AGG - chr6_4:4296614-4296633 None:intergenic 40.0%
ATGAAGTCTCATCCAAACCA+CGG - chr6_4:4296844-4296863 None:intergenic 40.0%
ATGGACCTGAAAAGTTACCA+TGG + chr6_4:4297204-4297223 Msa0972120:intron 40.0%
! ATTGACATTTAGGACCGCAT+TGG + chr6_4:4297289-4297308 Msa0972120:intron 40.0%
AATGAGCTGAAAGCAGCTTA+TGG - chr6_4:4297397-4297416 None:intergenic 40.0%
ATTTGGTTATGCAGATGTGG+AGG + chr6_4:4297665-4297684 Msa0972120:intron 40.0%
GAGAGAGCTTGATAAACATG+TGG - chr6_4:4297837-4297856 None:intergenic 40.0%
CGGTGAGATTGGCAAAATTA+TGG + chr6_4:4298183-4298202 Msa0972120:intron 40.0%
GACAAAAGCTACGTACACTT+TGG - chr6_4:4298233-4298252 None:intergenic 40.0%
!!! TGGTGGTTTTGGTAGAAACA+CGG - chr6_4:4298273-4298292 None:intergenic 40.0%
!!! GTTTGGATTGATGGTGGTTT+TGG - chr6_4:4298284-4298303 None:intergenic 40.0%
AGAAAGTGAAAGCAATCTGC+AGG - chr6_4:4298594-4298613 None:intergenic 40.0%
GCAGATTGCTTTCACTTTCT+TGG + chr6_4:4298594-4298613 Msa0972120:intron 40.0%
! ACTTTCAAGAGCATGATGCT+TGG - chr6_4:4298668-4298687 None:intergenic 40.0%
TTATGTGTCTGTACCAGGTA+CGG + chr6_4:4298705-4298724 Msa0972120:intron 40.0%
AGTATGGCTATTGCAAGAAC+AGG - chr6_4:4298835-4298854 None:intergenic 40.0%
AATAGCCATACTTCAAGCTG+TGG + chr6_4:4298843-4298862 Msa0972120:CDS 40.0%
AAGATGCTTGATCACGTCAA+AGG - chr6_4:4299174-4299193 None:intergenic 40.0%
GCACCAATACTTCAGATTGA+AGG + chr6_4:4299204-4299223 Msa0972120:intron 40.0%
AGACTATGACTAGAGACATC+AGG - chr6_4:4299629-4299648 None:intergenic 40.0%
GTCTTATGTTGGCACAAAAG+TGG + chr6_4:4299645-4299664 Msa0972120:CDS 40.0%
TATGTTGGCACAAAAGTGGT+TGG + chr6_4:4299649-4299668 Msa0972120:CDS 40.0%
ACCTTCAAGGAACTTGATGA+GGG - chr6_4:4299733-4299752 None:intergenic 40.0%
GTCATGTATGTATGGCACTA+TGG + chr6_4:4299792-4299811 Msa0972120:CDS 40.0%
ACCCTCACAATTCCTAAAGT+CGG - chr6_4:4299885-4299904 None:intergenic 40.0%
ATACATACTGAGCTTGTAGC+TGG + chr6_4:4299921-4299940 Msa0972120:CDS 40.0%
TGCAGAGAAAGATTACCACT+TGG - chr6_4:4299995-4300014 None:intergenic 40.0%
CCAACTAAGAATCTTTCTCG+AGG - chr6_4:4300047-4300066 None:intergenic 40.0%
CCTCGAGAAAGATTCTTAGT+TGG + chr6_4:4300044-4300063 Msa0972120:CDS 40.0%
AGATTCTTAGTTGGCCGAAT+TGG + chr6_4:4300053-4300072 Msa0972120:CDS 40.0%
! GAATTGGTCCAAAGGAGTAT+AGG + chr6_4:4300069-4300088 Msa0972120:CDS 40.0%
TGTCATCTTTGTGAACGTCA+CGG - chr6_4:4300124-4300143 None:intergenic 40.0%
TGACGTTCACAAAGATGACA+TGG + chr6_4:4300124-4300143 Msa0972120:CDS 40.0%
!! CGTATTCAGAAGTATCGGAT+CGG - chr6_4:4300190-4300209 None:intergenic 40.0%
CGATCCGATACTTCTGAATA+CGG + chr6_4:4300188-4300207 Msa0972120:CDS 40.0%
GATACTTCTGAATACGGCTT+AGG + chr6_4:4300194-4300213 Msa0972120:CDS 40.0%
ACTTCATCGTCAAACTCAGA+AGG + chr6_4:4300260-4300279 Msa0972120:CDS 40.0%
AGAAGGAACTTCAGAGTTGA+AGG + chr6_4:4300325-4300344 Msa0972120:CDS 40.0%
CTTATGGAAGCAAAAGAAGC+AGG + chr6_4:4300443-4300462 Msa0972120:CDS 40.0%
GAGCAAAAAGAGGATCAAGT+TGG + chr6_4:4300498-4300517 Msa0972120:CDS 40.0%
GCCGCCATTTATCATGTATA+AGG - chr6_4:4300699-4300718 None:intergenic 40.0%
AGGAGAAAGCTCTATGAGAA+AGG + chr6_4:4300909-4300928 Msa0972120:three_prime_UTR 40.0%
GGAGAAAGCTCTATGAGAAA+GGG + chr6_4:4300910-4300929 Msa0972120:three_prime_UTR 40.0%
ACGCGAACGTGTATATATTG+TGG - chr6_4:4300965-4300984 None:intergenic 40.0%
!! TGGATTTTGGAAGGAAAGTG+AGG + chr6_4:4301049-4301068 Msa0972120:three_prime_UTR 40.0%
!! GGATTTTGGAAGGAAAGTGA+GGG + chr6_4:4301050-4301069 Msa0972120:three_prime_UTR 40.0%
! GATCAAGGTGTGAGAGGTTT+TGG - chr6_4:4294118-4294137 None:intergenic 45.0%
TTAGAGAGAGAGAGAGAGAG+AGG - chr6_4:4294168-4294187 None:intergenic 45.0%
ATGAGGTGAGGTAAGGTTGT+TGG - chr6_4:4294296-4294315 None:intergenic 45.0%
AATAGTGGTGTGATGAGGTG+AGG - chr6_4:4294308-4294327 None:intergenic 45.0%
AGTGTGTGTTAGGGGAAAAG+TGG - chr6_4:4294406-4294425 None:intergenic 45.0%
!! GCTGATGATAATGGTGAAGG+AGG + chr6_4:4295046-4295065 Msa0972120:CDS 45.0%
TCAGCTAGCTGATGAGGATT+TGG + chr6_4:4295129-4295148 Msa0972120:CDS 45.0%
GGATTTGGCACAGTACACAA+TGG + chr6_4:4295144-4295163 Msa0972120:CDS 45.0%
GTTCTCACACCAGCAATTTC+TGG + chr6_4:4295298-4295317 Msa0972120:CDS 45.0%
!! GTTTGGATTGGCGTTGAGAT+TGG + chr6_4:4295362-4295381 Msa0972120:intron 45.0%
!!! TTGGTGGTGACTCACTTTTG+TGG + chr6_4:4295749-4295768 Msa0972120:intron 45.0%
GAGGCATGTCGTGGTTTAAA+CGG + chr6_4:4295974-4295993 Msa0972120:intron 45.0%
!!! GTTCGATCGTGGTTTTGTCT+TGG - chr6_4:4296006-4296025 None:intergenic 45.0%
TGGTTCAAGGTTCAATCGGT+GGG + chr6_4:4296055-4296074 Msa0972120:intron 45.0%
! CATTTAGGACCGCATTGGAT+TGG + chr6_4:4297294-4297313 Msa0972120:intron 45.0%
ATCAGTATCGCACAAGCAAC+TGG - chr6_4:4297693-4297712 None:intergenic 45.0%
!! AGTACTGATGCATATCAGCC+AGG - chr6_4:4297784-4297803 None:intergenic 45.0%
CTGAAAAAGACTCAATGGGG+AGG + chr6_4:4297879-4297898 Msa0972120:CDS 45.0%
AAAAGACTCAATGGGGAGGT+TGG + chr6_4:4297883-4297902 Msa0972120:CDS 45.0%
! GTTTGTATTGGCGGTGAGAT+TGG + chr6_4:4298172-4298191 Msa0972120:intron 45.0%
!!! TGGTTTTGGTAGAAACACGG+TGG - chr6_4:4298270-4298289 None:intergenic 45.0%
GTGCATGTTTGGATTGATGG+TGG - chr6_4:4298290-4298309 None:intergenic 45.0%
CAGCTTGTCCCATATATGCT+AGG - chr6_4:4298636-4298655 None:intergenic 45.0%
!! GGGTTTTATGTGTCTGTACC+AGG + chr6_4:4298700-4298719 Msa0972120:CDS 45.0%
TCCAACCACAGCTTGAAGTA+TGG - chr6_4:4298851-4298870 None:intergenic 45.0%
GGAAGTCAAGCAATCATCAC+TGG + chr6_4:4298868-4298887 Msa0972120:CDS 45.0%
TGCTGCATTTCCCATTCGTT+TGG - chr6_4:4299052-4299071 None:intergenic 45.0%
AAACGAATGGGAAATGCAGC+AGG + chr6_4:4299051-4299070 Msa0972120:CDS 45.0%
! ACACTGACATGTGTTGACAC+TGG - chr6_4:4299235-4299254 None:intergenic 45.0%
GGCTGTCATAACTGTCATGT+TGG + chr6_4:4299593-4299612 Msa0972120:CDS 45.0%
TCCCTCATCAAGTTCCTTGA+AGG + chr6_4:4299729-4299748 Msa0972120:CDS 45.0%
CACCTTCAAGGAACTTGATG+AGG - chr6_4:4299734-4299753 None:intergenic 45.0%
!! TCAAGTTCCTTGAAGGTGCT+TGG + chr6_4:4299736-4299755 Msa0972120:CDS 45.0%
!! CAAGTTCCTTGAAGGTGCTT+GGG + chr6_4:4299737-4299756 Msa0972120:CDS 45.0%
AGATGAGTGAGAGGGCAATA+GGG - chr6_4:4299764-4299783 None:intergenic 45.0%
AAGATGAGTGAGAGGGCAAT+AGG - chr6_4:4299765-4299784 None:intergenic 45.0%
AAACCGAGGAGCCAATTGAT+GGG - chr6_4:4299858-4299877 None:intergenic 45.0%
TAAACCGAGGAGCCAATTGA+TGG - chr6_4:4299859-4299878 None:intergenic 45.0%
! ATCAATTGGCTCCTCGGTTT+AGG + chr6_4:4299858-4299877 Msa0972120:CDS 45.0%
CCCTCACAATTCCTAAAGTC+GGG - chr6_4:4299884-4299903 None:intergenic 45.0%
! CCCGACTTTAGGAATTGTGA+GGG + chr6_4:4299881-4299900 Msa0972120:CDS 45.0%
TTGGTGAAAGGCAGGAAGAT+TGG - chr6_4:4299976-4299995 None:intergenic 45.0%
! ATTACCACTTGGTGAAAGGC+AGG - chr6_4:4299984-4300003 None:intergenic 45.0%
TCTCTGCATCAAATCTGTCC+CGG + chr6_4:4300007-4300026 Msa0972120:CDS 45.0%
! GGCTTTATAGGTGCATAGCA+CGG + chr6_4:4300090-4300109 Msa0972120:CDS 45.0%
TATAGGTGCATAGCACGGTA+CGG + chr6_4:4300095-4300114 Msa0972120:CDS 45.0%
TCTGAATACGGCTTAGGGTT+AGG + chr6_4:4300200-4300219 Msa0972120:CDS 45.0%
! CTCAGAAGGCGTAAAGATGT+CGG + chr6_4:4300274-4300293 Msa0972120:CDS 45.0%
CTTGTATCGTTATCCATCCG+CGG - chr6_4:4300407-4300426 None:intergenic 45.0%
GCGGATGGATAACGATACAA+GGG + chr6_4:4300406-4300425 Msa0972120:CDS 45.0%
GGAAGAACTGCTTGAGCTTA+TGG + chr6_4:4300427-4300446 Msa0972120:CDS 45.0%
GGAAGCAAAAGAAGCAGGAA+TGG + chr6_4:4300448-4300467 Msa0972120:CDS 45.0%
ACCTCATGCATCTACCTTAG+AGG + chr6_4:4300598-4300617 Msa0972120:CDS 45.0%
!! ACCTCTAAGGTAGATGCATG+AGG - chr6_4:4300602-4300621 None:intergenic 45.0%
CATGCATCTACCTTAGAGGT+AGG + chr6_4:4300602-4300621 Msa0972120:CDS 45.0%
!!! TTTTTATATTATTATAATGA+GGG - chr6_4:4294437-4294456 None:intergenic 5.0%
!!! TTTTTTATATTATTATAATG+AGG - chr6_4:4294438-4294457 None:intergenic 5.0%
GATGGTGATCAAGGTGTGAG+AGG - chr6_4:4294124-4294143 None:intergenic 50.0%
TGGTGTGATGAGGTGAGGTA+AGG - chr6_4:4294303-4294322 None:intergenic 50.0%
AATTGGAGATCGAAACGGCG+AGG + chr6_4:4295955-4295974 Msa0972120:intron 50.0%
AACTGAACCATGGCGAAGAG+TGG + chr6_4:4296035-4296054 Msa0972120:intron 50.0%
GTGGTTCAAGGTTCAATCGG+TGG + chr6_4:4296054-4296073 Msa0972120:intron 50.0%
GTGCGAAAAGACATCCAACG+CGG - chr6_4:4297749-4297768 None:intergenic 50.0%
ATCAGCCAGGTCAACACAAC+AGG - chr6_4:4297771-4297790 None:intergenic 50.0%
ATGGGGAGGTTGGATGTCTT+TGG + chr6_4:4297893-4297912 Msa0972120:CDS 50.0%
TGGGGAGGTTGGATGTCTTT+GGG + chr6_4:4297894-4297913 Msa0972120:CDS 50.0%
! GAGGTTGGATGTCTTTGGGA+GGG + chr6_4:4297898-4297917 Msa0972120:CDS 50.0%
CAGGTATGGAGTATATGCGG+AGG + chr6_4:4297937-4297956 Msa0972120:intron 50.0%
AATGTCACAGAGACCGTACC+TGG - chr6_4:4298721-4298740 None:intergenic 50.0%
GCCATACTTCAAGCTGTGGT+TGG + chr6_4:4298847-4298866 Msa0972120:CDS 50.0%
!! TTTGGGGAAGCACCCTAAAG+AGG - chr6_4:4298920-4298939 None:intergenic 50.0%
GACTAGAGACATCAGGCATG+TGG - chr6_4:4299622-4299641 None:intergenic 50.0%
AACCGAGGAGCCAATTGATG+GGG - chr6_4:4299857-4299876 None:intergenic 50.0%
! GCCCGACTTTAGGAATTGTG+AGG + chr6_4:4299880-4299899 Msa0972120:CDS 50.0%
TCTTCCTGCCTTTCACCAAG+TGG + chr6_4:4299977-4299996 Msa0972120:CDS 50.0%
CTTTCTCGAGGTGCAACATG+CGG - chr6_4:4300035-4300054 None:intergenic 50.0%
AGTTGGCCGAATTGGTCCAA+AGG + chr6_4:4300061-4300080 Msa0972120:CDS 50.0%
!! GAGAGTGAGGTTTGTTGTGC+CGG + chr6_4:4300376-4300395 Msa0972120:CDS 50.0%
! TTATCCATCCGCGGACTATC+CGG - chr6_4:4300398-4300417 None:intergenic 50.0%
CGCGGATGGATAACGATACA+AGG + chr6_4:4300405-4300424 Msa0972120:CDS 50.0%
CCTTGAACCACTCTTCGCCA+TGG - chr6_4:4296045-4296064 None:intergenic 55.0%
CCATGGCGAAGAGTGGTTCA+AGG + chr6_4:4296042-4296061 Msa0972120:intron 55.0%
TTCAATCGGTGGGACCGTCT+TGG + chr6_4:4296065-4296084 Msa0972120:intron 55.0%
! TCGCACCTGTTGTGTTGACC+TGG + chr6_4:4297763-4297782 Msa0972120:CDS 55.0%
GGAGGTTGGATGTCTTTGGG+AGG + chr6_4:4297897-4297916 Msa0972120:CDS 55.0%
TAGGGACCCAAGCACCTTCA+AGG - chr6_4:4299746-4299765 None:intergenic 55.0%
! GTCCCCATCAATTGGCTCCT+CGG + chr6_4:4299852-4299871 Msa0972120:CDS 55.0%
CTAAAGTCGGGCCTAAACCG+AGG - chr6_4:4299872-4299891 None:intergenic 55.0%
CTCGGTTTAGGCCCGACTTT+AGG + chr6_4:4299870-4299889 Msa0972120:CDS 55.0%
TTGTTGTGCCGGATAGTCCG+CGG + chr6_4:4300387-4300406 Msa0972120:CDS 55.0%
CATTACGGCACTCACCGCGT+TGG + chr6_4:4297732-4297751 Msa0972120:CDS 60.0%
GAGGTGCAACATGCGGTACC+GGG - chr6_4:4300028-4300047 None:intergenic 60.0%
CGAGGTGCAACATGCGGTAC+CGG - chr6_4:4300029-4300048 None:intergenic 60.0%
CGAAACGGCGAGGCATGTCG+TGG + chr6_4:4295965-4295984 Msa0972120:intron 65.0%
TGTGCCGGATAGTCCGCGGA+TGG + chr6_4:4300391-4300410 Msa0972120:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 4294036 4301165 4294036 ID=Msa0972120;Name=Msa0972120
chr6_4 mRNA 4294036 4301165 4294036 ID=Msa0972120-mRNA-1;Parent=Msa0972120;Name=Msa0972120-mRNA-1;_AED=0.05;_eAED=0.05;_QI=628|1|1|1|1|1|8|522|776
chr6_4 exon 4294036 4294702 4294036 ID=Msa0972120-mRNA-1:exon:1909;Parent=Msa0972120-mRNA-1
chr6_4 exon 4294830 4295319 4294830 ID=Msa0972120-mRNA-1:exon:1910;Parent=Msa0972120-mRNA-1
chr6_4 exon 4295799 4295852 4295799 ID=Msa0972120-mRNA-1:exon:1911;Parent=Msa0972120-mRNA-1
chr6_4 exon 4297679 4297939 4297679 ID=Msa0972120-mRNA-1:exon:1912;Parent=Msa0972120-mRNA-1
chr6_4 exon 4298027 4298079 4298027 ID=Msa0972120-mRNA-1:exon:1913;Parent=Msa0972120-mRNA-1
chr6_4 exon 4298598 4298721 4298598 ID=Msa0972120-mRNA-1:exon:1914;Parent=Msa0972120-mRNA-1
chr6_4 exon 4298818 4299072 4298818 ID=Msa0972120-mRNA-1:exon:1915;Parent=Msa0972120-mRNA-1
chr6_4 exon 4299589 4301165 4299589 ID=Msa0972120-mRNA-1:exon:1916;Parent=Msa0972120-mRNA-1
chr6_4 five_prime_UTR 4294036 4294663 4294036 ID=Msa0972120-mRNA-1:five_prime_utr;Parent=Msa0972120-mRNA-1
chr6_4 CDS 4294664 4294702 4294664 ID=Msa0972120-mRNA-1:cds;Parent=Msa0972120-mRNA-1
chr6_4 CDS 4294830 4295319 4294830 ID=Msa0972120-mRNA-1:cds;Parent=Msa0972120-mRNA-1
chr6_4 CDS 4295799 4295852 4295799 ID=Msa0972120-mRNA-1:cds;Parent=Msa0972120-mRNA-1
chr6_4 CDS 4297679 4297939 4297679 ID=Msa0972120-mRNA-1:cds;Parent=Msa0972120-mRNA-1
chr6_4 CDS 4298027 4298079 4298027 ID=Msa0972120-mRNA-1:cds;Parent=Msa0972120-mRNA-1
chr6_4 CDS 4298598 4298721 4298598 ID=Msa0972120-mRNA-1:cds;Parent=Msa0972120-mRNA-1
chr6_4 CDS 4298818 4299072 4298818 ID=Msa0972120-mRNA-1:cds;Parent=Msa0972120-mRNA-1
chr6_4 CDS 4299589 4300643 4299589 ID=Msa0972120-mRNA-1:cds;Parent=Msa0972120-mRNA-1
chr6_4 three_prime_UTR 4300644 4301165 4300644 ID=Msa0972120-mRNA-1:three_prime_utr;Parent=Msa0972120-mRNA-1
Gene Sequence

>Msa0972120

ATGGATCTTGAGTCTGTGATCCACAAGAACCCAATTAAGGATGATTCATGGAAGCATGTGTTGGTTTTGGCATATCAAAGTTTAGGAGTTGTGTATGGAGATTTAAGCACTTCTCCACTATATGTATACAAAAGCACTTTTGCTGAGGATATTGAGCATTCAGATACAAATGAAGAAATCTTTGGTGTATTGTCTTTTGTGTTTTGGACACTAACTTTGATTCCACTTCTGAAATATGTGTTCATTGTGTTGAGAGCTGATGATAATGGTGAAGGAGGAACTTTTGCTTTATACTCTTTGCTATGTAGACATGCTAGAGTGAGTTTGATGCCTAATACTCAGCTAGCTGATGAGGATTTGGCACAGTACACAATGGATGAAACTGTTGCTGTTGATAAGAAAAATGTTGGGTCTAGATTGAAATCTTTGTTGGAGAAACATAGAGTGCTTCAAAGGGTGCTTCTTGTTCTTGCTTTGATTGGAACATGCATGGTTATTGGTGATGGTGTTCTCACACCAGCAATTTCTGTTTTTTCTGCCATATCAGGTTTAGAGCTTTCCATGTCTAAAGAGCAGCACAAATATGTGGAGGTTCCAGTTGCTTGTGCGATACTGATATTTTTATTCGCTCTTCAACATTACGGCACTCACCGCGTTGGATGTCTTTTCGCACCTGTTGTGTTGACCTGGCTGATATGCATCAGTACTATTGGTCTTTATAATATAATCCATTGGAATCCACATGTTTATCAAGCTCTCTCTCCATGCTACATGTTCAAATTTCTGAAAAAGACTCAATGGGGAGGTTGGATGTCTTTGGGAGGGATTCTATTGTGTATAACAGGCTCAGAAGCTATGTATGCTGATTTGGGACACTTTAATCAATTGTCTATTCAGATTGCTTTCACTTTCTTGGTATACCCTTCTTTGATCCTAGCATATATGGGACAAGCTGCATATCTTTCCAAGCATCATGCTCTTGAAAGTGACTATAGAATTGGGTTTTATGTGTCTGTACCAGTAAAACTTAGATGGCCTGTTCTTGCAATAGCCATACTTCAAGCTGTGGTTGGAAGTCAAGCAATCATCACTGGAACTTTCTCGATAATCAAACAGTGTTCCTCTTTAGGGTGCTTCCCCAAAGTCAAAATCGTTCACACATCATCGAAAATACATGGCCAGATTTACATTCCTGAGATCAACTGGAGTTTAATGCTTCTTTGTCTTGCTGTTACAATTGGATTTCGAGATACCAAACGAATGGGAAATGCAGCAGGTCTGGCTGTCATAACTGTCATGTTGGTGACCACATGCCTGATGTCTCTAGTCATAGTCTTATGTTGGCACAAAAGTGGTTGGCTAGCTATTTGCTTTCTATTGTTCTTTGGATCCATTGAAGCACTCTATTTCTCTGCATCCCTCATCAAGTTCCTTGAAGGTGCTTGGGTCCCTATTGCCCTCTCACTCATCTTTCTTATTGTCATGTATGTATGGCACTATGGCACAATAAAGAAGTACGAGTTCGATGTTCAAAATAAGGTCCCCATCAATTGGCTCCTCGGTTTAGGCCCGACTTTAGGAATTGTGAGGGTTAAAGGTATCGGCCTAATACATACTGAGCTTGTAGCTGGAATCCCAGCTATTTTCTCTCATTTTGTCACCAATCTTCCTGCCTTTCACCAAGTGGTAATCTTTCTCTGCATCAAATCTGTCCCGGTACCGCATGTTGCACCTCGAGAAAGATTCTTAGTTGGCCGAATTGGTCCAAAGGAGTATAGGCTTTATAGGTGCATAGCACGGTACGGCTACCGTGACGTTCACAAAGATGACATGGAGTTCGAGAAAGATCTTATATGCAGTATAGCTGAATTTATCCGATCCGATACTTCTGAATACGGCTTAGGGTTAGGAAGTTTCGAAGAAGATACAAAGATGACAGTTGTCGGAACTTCATCGTCAAACTCAGAAGGCGTAAAGATGTCGGAAGACGATCAAGATAATAATTCTCAAATAGAAGGAACTTCAGAGTTGAAGGAAGTTAAGTCACCCGAAAAAGTGAAGAAGAGAGTGAGGTTTGTTGTGCCGGATAGTCCGCGGATGGATAACGATACAAGGGAAGAACTGCTTGAGCTTATGGAAGCAAAAGAAGCAGGAATGGCATTTATAATGAGTCATTCATATGTGAGAGCAAAAAGAGGATCAAGTTGGATAAAGAAAGTTGTTATAAATTATGGTTATGATTTCTTAAGAAGAAACTCTAGAGGACCAACTTATGCTTTAAGTTTACCTCATGCATCTACCTTAGAGGTAGGTATGATCTATCATGTCTAA
Protein sequence

>Msa0972120

MDLESVIHKNPIKDDSWKHVLVLAYQSLGVVYGDLSTSPLYVYKSTFAEDIEHSDTNEEIFGVLSFVFWTLTLIPLLKYVFIVLRADDNGEGGTFALYSLLCRHARVSLMPNTQLADEDLAQYTMDETVAVDKKNVGSRLKSLLEKHRVLQRVLLVLALIGTCMVIGDGVLTPAISVFSAISGLELSMSKEQHKYVEVPVACAILIFLFALQHYGTHRVGCLFAPVVLTWLICISTIGLYNIIHWNPHVYQALSPCYMFKFLKKTQWGGWMSLGGILLCITGSEAMYADLGHFNQLSIQIAFTFLVYPSLILAYMGQAAYLSKHHALESDYRIGFYVSVPVKLRWPVLAIAILQAVVGSQAIITGTFSIIKQCSSLGCFPKVKIVHTSSKIHGQIYIPEINWSLMLLCLAVTIGFRDTKRMGNAAGLAVITVMLVTTCLMSLVIVLCWHKSGWLAICFLLFFGSIEALYFSASLIKFLEGAWVPIALSLIFLIVMYVWHYGTIKKYEFDVQNKVPINWLLGLGPTLGIVRVKGIGLIHTELVAGIPAIFSHFVTNLPAFHQVVIFLCIKSVPVPHVAPRERFLVGRIGPKEYRLYRCIARYGYRDVHKDDMEFEKDLICSIAEFIRSDTSEYGLGLGSFEEDTKMTVVGTSSSNSEGVKMSEDDQDNNSQIEGTSELKEVKSPEKVKKRVRFVVPDSPRMDNDTREELLELMEAKEAGMAFIMSHSYVRAKRGSSWIKKVVINYGYDFLRRNSRGPTYALSLPHASTLEVGMIYHV*