AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0928120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0928120 MtrunA17_Chr6g0484471 84.052 232 1 1 1 196 1 232 5.94e-139 387
Msa0928120 MtrunA17_Chr4g0029711 77.155 232 17 1 1 196 1 232 4.19e-131 367
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0928120 AT1G56450.1 70.044 227 32 1 6 196 20 246 3.63e-116 330

Find 77 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTCATGGCTGCTGATA+TGG 0.179124 6_2:+73015878 Msa0928120:CDS
TGTTCTTGGTGGTGTTAAAA+AGG 0.203874 6_2:+73017372 Msa0928120:CDS
TTGTGGAACTCACTTGTTCT+TGG 0.291580 6_2:+73017358 Msa0928120:CDS
GTCTGCTGTGAACAAGATTC+AGG 0.323330 6_2:+73017665 Msa0928120:CDS
CATCCCACATGTTGTCAATA+AGG 0.327041 6_2:-73017255 None:intergenic
GTGGGATGATGGGAACTCTT+TGG 0.337980 6_2:+73017270 Msa0928120:CDS
CTTATCCAGGTTAGCATGAT+TGG 0.338514 6_2:+73017492 Msa0928120:intron
CATTCTCTTTGAAAACATAC+TGG 0.339670 6_2:+73019315 Msa0928120:CDS
GAGCTTTGGTTCCTCACAAC+CGG 0.340556 6_2:+73019656 Msa0928120:three_prime_UTR
TTCCACTCATCGCGGAGAAT+TGG 0.357012 6_2:-73017570 None:intergenic
TAACTCGGGTGATGTATAAT+AGG 0.358277 6_2:+73017317 Msa0928120:CDS
GAAGACAACCATGTGGCAAC+TGG 0.364317 6_2:+73017525 Msa0928120:CDS
TGGGATGATGGGAACTCTTT+GGG 0.367264 6_2:+73017271 Msa0928120:CDS
AACTAATTCACAGGTTCATA+TGG 0.374338 6_2:+73016309 Msa0928120:intron
AATAAGTATTTAGATATTTG+AGG 0.394345 6_2:+73013224 Msa0928120:five_prime_UTR
AAATAGTTGTGGACCTCCTT+AGG 0.402257 6_2:-73017295 None:intergenic
TTAGGTTAAGAAAGAAGAAA+AGG 0.410073 6_2:-73013346 None:intergenic
CATAACTATTCAGTGTTGTA+TGG 0.420718 6_2:+73019436 Msa0928120:three_prime_UTR
AACCATGTGGCAACTGGGCT+TGG 0.423568 6_2:+73017531 Msa0928120:CDS
AGAATACATACAGAGTTCTC+TGG 0.424755 6_2:-73015689 None:intergenic
GAAAACATACTGGGAGTTCT+CGG 0.436500 6_2:+73019325 Msa0928120:CDS
ATTCTCATGGCTGCTGATAT+GGG 0.437064 6_2:+73015879 Msa0928120:CDS
ATCACGAACTCTCCGATTCA+AGG 0.441934 6_2:+73013402 Msa0928120:five_prime_UTR
CAGTTGGTGCTGAAGGTTCA+TGG 0.451533 6_2:+73019363 Msa0928120:CDS
ACCAACTGTTGGATTCTTGA+AGG 0.455188 6_2:-73019348 None:intergenic
TGGAACTCACTTGTTCTTGG+TGG 0.462785 6_2:+73017361 Msa0928120:CDS
TTGAAATTAGCCATGAGCTT+TGG 0.469862 6_2:+73019642 Msa0928120:three_prime_UTR
AGCTTTGGTTCCTCACAACC+GGG 0.478329 6_2:+73019657 Msa0928120:three_prime_UTR
TGGGAACTCTTTGGGACCTA+AGG 0.494345 6_2:+73017279 Msa0928120:CDS
AGAAGAAGAATACCTTGAAT+CGG 0.494854 6_2:-73013414 None:intergenic
ATTGACAACATGTGGGATGA+TGG 0.498069 6_2:+73017259 Msa0928120:CDS
TGAATCCTTCGTCGTTGTGA+TGG 0.519215 6_2:+73015650 Msa0928120:exon
ATATCTAAAATTACCGAAGA+AGG 0.520773 6_2:+73019275 Msa0928120:CDS
GAAAACTTGACATTTGAAGA+AGG 0.522330 6_2:+73017594 Msa0928120:CDS
AATCCAACAGTTGGTGCTGA+AGG 0.522601 6_2:+73019356 Msa0928120:CDS
GTAAACAGTAGCACCTTCTT+CGG 0.525664 6_2:-73019288 None:intergenic
GAACCTTCAGCACCAACTGT+TGG 0.532387 6_2:-73019359 None:intergenic
GTTGCTATCAAATACAAAGA+TGG 0.535140 6_2:+73015855 Msa0928120:CDS
ACAACACTGAATAGTTATGT+TGG 0.542715 6_2:-73019432 None:intergenic
ACGGAGGATCCAGTTACGTA+TGG 0.544818 6_2:-73015831 None:intergenic
AAGTCATCATGTCTTAAGCC+AGG 0.553114 6_2:-73019687 None:intergenic
GGCCAATTCTCCGCGATGAG+TGG 0.562260 6_2:+73017568 Msa0928120:CDS
GAATACATACAGAGTTCTCT+GGG 0.564352 6_2:-73015688 None:intergenic
GCCTTCAAGAATCCAACAGT+TGG 0.564781 6_2:+73019347 Msa0928120:CDS
TTTGCATTTGAAGTCAATGA+GGG 0.570386 6_2:+73019611 Msa0928120:three_prime_UTR
TTGACAACATGTGGGATGAT+GGG 0.571070 6_2:+73017260 Msa0928120:CDS
ATACAAAGATGGCATTCTCA+TGG 0.571569 6_2:+73015866 Msa0928120:CDS
TTCCAAGCCCAGTTGCCACA+TGG 0.580626 6_2:-73017533 None:intergenic
GCAGCCTTATTGACAACATG+TGG 0.586058 6_2:+73017251 Msa0928120:intron
AGGTCCACAACTATTTAACT+CGG 0.589584 6_2:+73017302 Msa0928120:CDS
TTGTGAGGAACCAAAGCTCA+TGG 0.592214 6_2:-73019652 None:intergenic
GTTTGCATTTGAAGTCAATG+AGG 0.593669 6_2:+73019610 Msa0928120:three_prime_UTR
AAGACAACCATGTGGCAACT+GGG 0.606831 6_2:+73017526 Msa0928120:CDS
GAACTCTTTGGGACCTAAGG+AGG 0.607188 6_2:+73017282 Msa0928120:CDS
GGCTTGGAAATCATCTTGCT+AGG 0.608634 6_2:+73017547 Msa0928120:CDS
ATTCTCTTTGAAAACATACT+GGG 0.610546 6_2:+73019316 Msa0928120:CDS
TTTGTATTTGATAGCAACGA+CGG 0.611101 6_2:-73015850 None:intergenic
TGTTCACAGCAGACCTATCA+CGG 0.621004 6_2:-73017656 None:intergenic
GCTTTGGTTCCTCACAACCG+GGG 0.622631 6_2:+73019658 Msa0928120:three_prime_UTR
CTTTGGTTCCTCACAACCGG+GGG 0.624825 6_2:+73019659 Msa0928120:three_prime_UTR
CTTAAGCCAGGATCCACCCC+CGG 0.626817 6_2:-73019675 None:intergenic
AAAAGGAATAAAGATGACAA+AGG 0.631944 6_2:-73013329 None:intergenic
TCACCCGAGTTAAATAGTTG+TGG 0.633695 6_2:-73017306 None:intergenic
CGGAGGATCCAGTTACGTAT+GGG 0.635103 6_2:-73015830 None:intergenic
CTCATGGCTGCTGATATGGG+AGG 0.637244 6_2:+73015882 Msa0928120:CDS
AAGTAAGGCATACCGTGCCA+AGG 0.647059 6_2:-73017405 None:intergenic
GGTCCACAACTATTTAACTC+GGG 0.657570 6_2:+73017303 Msa0928120:CDS
TTGCATTTGAAGTCAATGAG+GGG 0.661509 6_2:+73019612 Msa0928120:three_prime_UTR
GGGGCAGAAGTACCTTGGCA+CGG 0.670563 6_2:+73017393 Msa0928120:CDS
AGAACAAGTGAGTTCCACAA+TGG 0.678967 6_2:-73017355 None:intergenic
AGTGTCCATCACAACGACGA+AGG 0.686041 6_2:-73015655 None:intergenic
CAGCCTTATTGACAACATGT+GGG 0.687070 6_2:+73017252 Msa0928120:intron
TGTATGGATATGAAATGACT+AGG 0.691920 6_2:+73019452 Msa0928120:three_prime_UTR
GCAACAAGTTCAATCCATTG+TGG 0.696663 6_2:+73017341 Msa0928120:CDS
GTATTTGATAGCAACGACGG+AGG 0.702152 6_2:-73015847 None:intergenic
TAATTACGAAGACAACCATG+TGG 0.788585 6_2:+73017518 Msa0928120:CDS
GTTCATATGGATCTACACTG+AGG 0.793582 6_2:+73016322 Msa0928120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAATAATATAATTA+AGG + chr6_2:73016461-73016480 Msa0928120:intron 0.0%
!!! TTTTAAAATAATATAATTAA+GGG + chr6_2:73016462-73016481 Msa0928120:intron 0.0%
!!! ATATCTAAATACTTATTTTT+TGG - chr6_2:73013221-73013240 None:intergenic 10.0%
!!! TAAGTAAATTTTTTTTTGTA+GGG - chr6_2:73016565-73016584 None:intergenic 10.0%
!!! ATAAGTAAATTTTTTTTTGT+AGG - chr6_2:73016566-73016585 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG - chr6_2:73016627-73016646 None:intergenic 10.0%
!! AATAAGTATTTAGATATTTG+AGG + chr6_2:73013224-73013243 Msa0928120:five_prime_UTR 15.0%
!!! TTTTCATATAGGTTTATTTA+TGG + chr6_2:73013256-73013275 Msa0928120:five_prime_UTR 15.0%
!!! TTTATGGTTTTATTTTAGAT+CGG + chr6_2:73013272-73013291 Msa0928120:five_prime_UTR 15.0%
!! TACGAAAATAAAATAACTTA+TGG - chr6_2:73014317-73014336 None:intergenic 15.0%
!!! ATAAAATACATTTGAAATGA+AGG - chr6_2:73016072-73016091 None:intergenic 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG - chr6_2:73016536-73016555 None:intergenic 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG - chr6_2:73016598-73016617 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG - chr6_2:73016599-73016618 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG + chr6_2:73016758-73016777 Msa0928120:intron 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG + chr6_2:73016793-73016812 Msa0928120:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG + chr6_2:73016877-73016896 Msa0928120:intron 15.0%
!! AATGCTATTAAAATTATGTA+AGG + chr6_2:73016949-73016968 Msa0928120:intron 15.0%
!!! TTTATGAATATTTTTCCTTT+GGG - chr6_2:73017881-73017900 None:intergenic 15.0%
!!! ATTTATGAATATTTTTCCTT+TGG - chr6_2:73017882-73017901 None:intergenic 15.0%
!! TTGAAAGATAATGTAAAATA+TGG - chr6_2:73017914-73017933 None:intergenic 15.0%
!! CAAAATTAATTAAATATGGA+AGG - chr6_2:73018266-73018285 None:intergenic 15.0%
!!! CTTCCATATTTAATTAATTT+TGG + chr6_2:73018264-73018283 Msa0928120:intron 15.0%
!!! AAAGTGTTTATGATTTTGTT+AGG - chr6_2:73013367-73013386 None:intergenic 20.0%
!! ATAATCAAAACATTTGCAAT+TGG - chr6_2:73013686-73013705 None:intergenic 20.0%
!! TTCATTAAGAATATCAATTC+CGG - chr6_2:73014015-73014034 None:intergenic 20.0%
!!! AAGTTTGAAATTTATGTCTA+GGG + chr6_2:73014037-73014056 Msa0928120:intron 20.0%
!! ATTAAAGCTGATAGAAATTT+AGG + chr6_2:73014210-73014229 Msa0928120:intron 20.0%
!! TTAAAGCTGATAGAAATTTA+GGG + chr6_2:73014211-73014230 Msa0928120:intron 20.0%
!!! AATTTTTTCCTTTATTTGCA+AGG + chr6_2:73015037-73015056 Msa0928120:intron 20.0%
!!! ATTTTTTCCTTTATTTGCAA+GGG + chr6_2:73015038-73015057 Msa0928120:intron 20.0%
!!! TTCTATTTAAGTTTGATGAA+TGG + chr6_2:73015062-73015081 Msa0928120:intron 20.0%
!! TGTTTCATTTATATATAACC+CGG + chr6_2:73015206-73015225 Msa0928120:intron 20.0%
!!! AATTTTTATTTCACATCCTT+AGG + chr6_2:73015613-73015632 Msa0928120:intron 20.0%
!! AGAACATTAATAATTGAAGA+GGG - chr6_2:73015725-73015744 None:intergenic 20.0%
!! AAGAACATTAATAATTGAAG+AGG - chr6_2:73015726-73015745 None:intergenic 20.0%
!!! CTTTTTTCTTAAAAAGTTAC+AGG - chr6_2:73016137-73016156 None:intergenic 20.0%
!!! TTAAGGGTTAAATATGTTTT+TGG + chr6_2:73016478-73016497 Msa0928120:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG - chr6_2:73016847-73016866 None:intergenic 20.0%
!!! TATAGGGTTAATTATGTTTT+TGG - chr6_2:73017007-73017026 None:intergenic 20.0%
!! TCAAATAAGTGAAGTAAAAA+TGG + chr6_2:73017063-73017082 Msa0928120:intron 20.0%
!! CAAATAAGTGAAGTAAAAAT+GGG + chr6_2:73017064-73017083 Msa0928120:intron 20.0%
!!! TGTTTGAAATGTAGATAAAT+AGG - chr6_2:73017137-73017156 None:intergenic 20.0%
!!! GTTGTAATATTTAAAGTCAA+GGG - chr6_2:73017188-73017207 None:intergenic 20.0%
!!! TGATTATTTTGGATTATGAA+TGG + chr6_2:73017950-73017969 Msa0928120:intron 20.0%
!! TTCTAACCAAAAAATTAATG+TGG - chr6_2:73018063-73018082 None:intergenic 20.0%
!! TTTATACATTAAGAATTGTG+TGG + chr6_2:73018099-73018118 Msa0928120:intron 20.0%
!! ATTAATTAAATATGGAAGGA+AGG - chr6_2:73018262-73018281 None:intergenic 20.0%
!! CAGCCAAAATTAATTAAATA+TGG - chr6_2:73018270-73018289 None:intergenic 20.0%
!!! CATATTTAATTAATTTTGGC+TGG + chr6_2:73018268-73018287 Msa0928120:intron 20.0%
!!! AAAGTTATTTGAGATAGAAA+GGG + chr6_2:73018524-73018543 Msa0928120:intron 20.0%
!! AGTAAATTCAGGATTTATAT+AGG + chr6_2:73018554-73018573 Msa0928120:intron 20.0%
!!! ATTTATATAGGTTGATTTGT+CGG + chr6_2:73018566-73018585 Msa0928120:intron 20.0%
!! AGAAAACATATATAGAATGA+AGG - chr6_2:73018679-73018698 None:intergenic 20.0%
!!! ATGAAATTGAAACTTTTACA+CGG - chr6_2:73019012-73019031 None:intergenic 20.0%
!! ACAAATCATCATTAAGTTTA+GGG - chr6_2:73019145-73019164 None:intergenic 20.0%
!! AACAAATCATCATTAAGTTT+AGG - chr6_2:73019146-73019165 None:intergenic 20.0%
!!! AAATGAAACAGAATTTTACA+TGG + chr6_2:73019406-73019425 Msa0928120:three_prime_UTR 20.0%
!!! TACTTATTTTTTGGTGTGTT+TGG - chr6_2:73013212-73013231 None:intergenic 25.0%
!!! GGTTTTCGATTTTTTCATAT+AGG + chr6_2:73013245-73013264 Msa0928120:five_prime_UTR 25.0%
!!! GGACTTTTTTTTTATTAACG+AGG - chr6_2:73013311-73013330 None:intergenic 25.0%
! AAAAGGAATAAAGATGACAA+AGG - chr6_2:73013332-73013351 None:intergenic 25.0%
! TTAGGTTAAGAAAGAAGAAA+AGG - chr6_2:73013349-73013368 None:intergenic 25.0%
!! TTTTTGTGTTTTCTCATGTT+AGG + chr6_2:73013642-73013661 Msa0928120:intron 25.0%
!! TTTTGTGTTTTCTCATGTTA+GGG + chr6_2:73013643-73013662 Msa0928120:intron 25.0%
!!! GTTATCGATTTTTCATATGA+AGG + chr6_2:73013710-73013729 Msa0928120:intron 25.0%
! TCCAATGTAGATTATGAAAA+TGG - chr6_2:73013882-73013901 None:intergenic 25.0%
! TATGAACATTCTGTATTCAT+AGG + chr6_2:73013932-73013951 Msa0928120:intron 25.0%
! TCATTAAGAATATCAATTCC+GGG - chr6_2:73014014-73014033 None:intergenic 25.0%
!! CAAGTTTGAAATTTATGTCT+AGG + chr6_2:73014036-73014055 Msa0928120:intron 25.0%
! TTTCATTCTAAACTACTGAT+CGG + chr6_2:73014060-73014079 Msa0928120:intron 25.0%
!! TTGTGATCAAAAGAATGTTT+TGG + chr6_2:73014154-73014173 Msa0928120:intron 25.0%
!! TGTGATCAAAAGAATGTTTT+GGG + chr6_2:73014155-73014174 Msa0928120:intron 25.0%
! ATATAATGACATAAGCTGTT+TGG + chr6_2:73014261-73014280 Msa0928120:intron 25.0%
! TATAATGACATAAGCTGTTT+GGG + chr6_2:73014262-73014281 Msa0928120:intron 25.0%
!! TTATACATAAGTGCTTTGTT+TGG + chr6_2:73014422-73014441 Msa0928120:intron 25.0%
!!! TATACATAAGTGCTTTGTTT+GGG + chr6_2:73014423-73014442 Msa0928120:intron 25.0%
!!! AAACTATAAGCTGTTTTCAT+AGG - chr6_2:73014523-73014542 None:intergenic 25.0%
! AATTGTATATAGTGTCTGTT+TGG + chr6_2:73014645-73014664 Msa0928120:intron 25.0%
! ACTTATTTGAACTTATCTAC+TGG + chr6_2:73014672-73014691 Msa0928120:intron 25.0%
!!! GCTGTTTTTATAAGCTATAT+TGG - chr6_2:73014770-73014789 None:intergenic 25.0%
!!! ATGATAATTATGGGCTTTTT+TGG - chr6_2:73014885-73014904 None:intergenic 25.0%
!!! TGTGTAGTTTTAAGTATGAT+TGG + chr6_2:73014910-73014929 Msa0928120:intron 25.0%
!!! GTGTAGTTTTAAGTATGATT+GGG + chr6_2:73014911-73014930 Msa0928120:intron 25.0%
!!! TGTAGTTTTAAGTATGATTG+GGG + chr6_2:73014912-73014931 Msa0928120:intron 25.0%
!!! GTTTTGTTTCATTGTTTCAT+TGG + chr6_2:73015084-73015103 Msa0928120:intron 25.0%
! TTATCATTTGTTTGCTTTGA+TGG + chr6_2:73015168-73015187 Msa0928120:intron 25.0%
! TACATTACGTGTTAACTATA+AGG + chr6_2:73015270-73015289 Msa0928120:intron 25.0%
!!! TTTTTTCCTCTGTTAAAACA+TGG + chr6_2:73015310-73015329 Msa0928120:intron 25.0%
!!! ATTAAACCATGTTTTAACAG+AGG - chr6_2:73015319-73015338 None:intergenic 25.0%
! AAAGAAAAAAAAGGAAAGGT+TGG - chr6_2:73015471-73015490 None:intergenic 25.0%
! CAAGAAAGAAAAAAAAGGAA+AGG - chr6_2:73015475-73015494 None:intergenic 25.0%
!!! CTTTCCTTTTTTTTCTTTCT+TGG + chr6_2:73015473-73015492 Msa0928120:intron 25.0%
! GGATGTGAAATAAAAATTCA+GGG - chr6_2:73015611-73015630 None:intergenic 25.0%
! AGGATGTGAAATAAAAATTC+AGG - chr6_2:73015612-73015631 None:intergenic 25.0%
!!! GTTCTTTTGATTCAAGTTTA+AGG + chr6_2:73015740-73015759 Msa0928120:intron 25.0%
! TATTATCTTTCCTTCTATTG+TGG + chr6_2:73016033-73016052 Msa0928120:intron 25.0%
!! TTTTCTTAAAAAGTTACAGG+AGG - chr6_2:73016134-73016153 None:intergenic 25.0%
!!! ATAAATGTTGTTTCCTTACA+AGG + chr6_2:73016167-73016186 Msa0928120:intron 25.0%
!!! TAAATGTTGTTTCCTTACAA+GGG + chr6_2:73016168-73016187 Msa0928120:intron 25.0%
! TTCTATCCATCAATTATCAT+TGG - chr6_2:73016287-73016306 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG - chr6_2:73016823-73016842 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG + chr6_2:73016888-73016907 Msa0928120:intron 25.0%
! AATGGGTGTGATTAATTAAA+TGG + chr6_2:73017081-73017100 Msa0928120:intron 25.0%
! AAACACAACAAACAAAAATC+AGG - chr6_2:73017466-73017485 None:intergenic 25.0%
! AACTTCGATAAGTTGTAAAT+GGG - chr6_2:73017748-73017767 None:intergenic 25.0%
! AAACTTCGATAAGTTGTAAA+TGG - chr6_2:73017749-73017768 None:intergenic 25.0%
!!! TGCTCAAGTTTTGATTATTT+TGG + chr6_2:73017939-73017958 Msa0928120:intron 25.0%
! TTGAAGTGAAATCATTTGTA+TGG + chr6_2:73018122-73018141 Msa0928120:intron 25.0%
! AAAGAAGTAAAAACTGAACA+GGG + chr6_2:73018479-73018498 Msa0928120:intron 25.0%
!! GAAAGTTATTTGAGATAGAA+AGG + chr6_2:73018523-73018542 Msa0928120:intron 25.0%
!! AATACAATCTCCTTTTAGAT+AGG + chr6_2:73018716-73018735 Msa0928120:intron 25.0%
! TTAGTATTCCAAATCATTCA+TGG - chr6_2:73018790-73018809 None:intergenic 25.0%
! GTGTAAAAGTTTCAATTTCA+TGG + chr6_2:73019011-73019030 Msa0928120:intron 25.0%
!! ATATCTAAAATTACCGAAGA+AGG + chr6_2:73019275-73019294 Msa0928120:CDS 25.0%
!! ATTCTCTTTGAAAACATACT+GGG + chr6_2:73019316-73019335 Msa0928120:CDS 25.0%
!!! ATTTTGAAGTTAAATGAGAC+TGG + chr6_2:73019476-73019495 Msa0928120:three_prime_UTR 25.0%
!! ATTTTCAGTAACATTCATCA+TGG + chr6_2:73019564-73019583 Msa0928120:three_prime_UTR 25.0%
! TGCAAACAATTCAAGAAAAA+AGG - chr6_2:73019597-73019616 None:intergenic 25.0%
AGAAGAAGAATACCTTGAAT+CGG - chr6_2:73013417-73013436 None:intergenic 30.0%
GTTTATCAGGAATTACGAAA+AGG - chr6_2:73013489-73013508 None:intergenic 30.0%
GGATGTTATACTAAGAATGA+GGG - chr6_2:73013511-73013530 None:intergenic 30.0%
TGGATGTTATACTAAGAATG+AGG - chr6_2:73013512-73013531 None:intergenic 30.0%
!! AATCGTTTTTCAATTTACCC+AGG + chr6_2:73013612-73013631 Msa0928120:intron 30.0%
!! ATCGTTTTTCAATTTACCCA+GGG + chr6_2:73013613-73013632 Msa0928120:intron 30.0%
TTTCATATGAAGGTTCTGTT+TGG + chr6_2:73013720-73013739 Msa0928120:intron 30.0%
!! GCCATTTTCATAATCTACAT+TGG + chr6_2:73013878-73013897 Msa0928120:intron 30.0%
AAGCATTTCTTAAGACTGTT+TGG - chr6_2:73013963-73013982 None:intergenic 30.0%
ACAGTCTTAAGAAATGCTTA+TGG + chr6_2:73013964-73013983 Msa0928120:intron 30.0%
! CTATTTGAGTTTATCTACTG+CGG - chr6_2:73013990-73014009 None:intergenic 30.0%
CCATTAGATAAGCTCAAATA+GGG - chr6_2:73014123-73014142 None:intergenic 30.0%
!! TCAAAAGAATGTTTTGGGTA+TGG + chr6_2:73014160-73014179 Msa0928120:intron 30.0%
TTCCATTCTAAATCACTGAT+AGG + chr6_2:73014183-73014202 Msa0928120:intron 30.0%
TTCCTATCAGTGATTTAGAA+TGG - chr6_2:73014188-73014207 None:intergenic 30.0%
! ATAGAAATTTAGGGTCTGTT+TGG + chr6_2:73014220-73014239 Msa0928120:intron 30.0%
! CCAGAATTTTACATCACAAA+GGG - chr6_2:73014572-73014591 None:intergenic 30.0%
! TCCAGAATTTTACATCACAA+AGG - chr6_2:73014573-73014592 None:intergenic 30.0%
! AGTTCTGCCTCTAAAAAATT+AGG - chr6_2:73014698-73014717 None:intergenic 30.0%
CACACACACATGATAATTAT+GGG - chr6_2:73014894-73014913 None:intergenic 30.0%
ACACACACACATGATAATTA+TGG - chr6_2:73014895-73014914 None:intergenic 30.0%
ATAGAATCCCTTGCAAATAA+AGG - chr6_2:73015048-73015067 None:intergenic 30.0%
! TTGTTTCATTGGACTTTTGT+TGG + chr6_2:73015095-73015114 Msa0928120:intron 30.0%
! TGTTTCATTGGACTTTTGTT+GGG + chr6_2:73015096-73015115 Msa0928120:intron 30.0%
GCATCCAAGAAAGAAAAAAA+AGG - chr6_2:73015480-73015499 None:intergenic 30.0%
CAACTAATTATGAGTACCTA+AGG - chr6_2:73015632-73015651 None:intergenic 30.0%
ACATTAATAATTGAAGAGGG+AGG - chr6_2:73015722-73015741 None:intergenic 30.0%
!! TTGCTTATTTTCTTTGCTCT+AGG + chr6_2:73015805-73015824 Msa0928120:intron 30.0%
! TTTGTATTTGATAGCAACGA+CGG - chr6_2:73015853-73015872 None:intergenic 30.0%
GTTGCTATCAAATACAAAGA+TGG + chr6_2:73015855-73015874 Msa0928120:CDS 30.0%
TAAAAGAGTGAACAAGAAGA+AGG - chr6_2:73015993-73016012 None:intergenic 30.0%
! TGTTCACTCTTTTACTTTGT+TGG + chr6_2:73015999-73016018 Msa0928120:intron 30.0%
CAAAATCTAACCACAATAGA+AGG - chr6_2:73016046-73016065 None:intergenic 30.0%
GTAATGCCAATGATAATTGA+TGG + chr6_2:73016278-73016297 Msa0928120:intron 30.0%
GATAGAATGAACTAATTCAC+AGG + chr6_2:73016300-73016319 Msa0928120:intron 30.0%
AACTAATTCACAGGTTCATA+TGG + chr6_2:73016309-73016328 Msa0928120:intron 30.0%
! TAGAAGGTCGCAATTTTATA+GGG - chr6_2:73016505-73016524 None:intergenic 30.0%
! TTAGAAGGTCGCAATTTTAT+AGG - chr6_2:73016506-73016525 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG - chr6_2:73016521-73016540 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG + chr6_2:73016796-73016815 Msa0928120:intron 30.0%
ATGTAAGGACTAAACTTACA+AGG + chr6_2:73016964-73016983 Msa0928120:intron 30.0%
AACAAGTAAAATGAAGCTGA+TGG - chr6_2:73017111-73017130 None:intergenic 30.0%
ACAACAAACAAAAATCAGGT+AGG - chr6_2:73017462-73017481 None:intergenic 30.0%
GAAAACTTGACATTTGAAGA+AGG + chr6_2:73017594-73017613 Msa0928120:CDS 30.0%
ACTTCGATAAGTTGTAAATG+GGG - chr6_2:73017747-73017766 None:intergenic 30.0%
GTTCTATATATAGCTGATAG+TGG + chr6_2:73017832-73017851 Msa0928120:intron 30.0%
!!! AGGAAGCCACATTAATTTTT+TGG + chr6_2:73018054-73018073 Msa0928120:intron 30.0%
ATTAAATATGGAAGGAAGGT+AGG - chr6_2:73018258-73018277 None:intergenic 30.0%
!!! TCCTTTATTTTCTGCTACTA+AGG - chr6_2:73018350-73018369 None:intergenic 30.0%
!! AATTTTGACATTTACTCTCG+TGG - chr6_2:73018421-73018440 None:intergenic 30.0%
ACGAGAGTAAATGTCAAAAT+TGG + chr6_2:73018420-73018439 Msa0928120:intron 30.0%
CGAGAGTAAATGTCAAAATT+GGG + chr6_2:73018421-73018440 Msa0928120:intron 30.0%
GAGAGTAAATGTCAAAATTG+GGG + chr6_2:73018422-73018441 Msa0928120:intron 30.0%
! CTGTTCAGTTTTTACTTCTT+TGG - chr6_2:73018480-73018499 None:intergenic 30.0%
CAAAGAAGTAAAAACTGAAC+AGG + chr6_2:73018478-73018497 Msa0928120:intron 30.0%
AAGAAGTAAAAACTGAACAG+GGG + chr6_2:73018480-73018499 Msa0928120:intron 30.0%
AGGGAGAAAATAGTAAATTC+AGG + chr6_2:73018543-73018562 Msa0928120:intron 30.0%
!! TGGATTTGCTTTCATTTTTC+TGG + chr6_2:73018599-73018618 Msa0928120:intron 30.0%
TAGGAAAGTTCCTATCTAAA+AGG - chr6_2:73018729-73018748 None:intergenic 30.0%
TCTGATCATGTATATGTGTT+AGG + chr6_2:73018966-73018985 Msa0928120:intron 30.0%
! ATTTGTTGAATATGTTGCGT+CGG + chr6_2:73019096-73019115 Msa0928120:intron 30.0%
! ATGTTTTCAAAGAGAATGGT+GGG - chr6_2:73019313-73019332 None:intergenic 30.0%
! TATGTTTTCAAAGAGAATGG+TGG - chr6_2:73019314-73019333 None:intergenic 30.0%
! CAGTATGTTTTCAAAGAGAA+TGG - chr6_2:73019317-73019336 None:intergenic 30.0%
! CATTCTCTTTGAAAACATAC+TGG + chr6_2:73019315-73019334 Msa0928120:CDS 30.0%
ACAACACTGAATAGTTATGT+TGG - chr6_2:73019435-73019454 None:intergenic 30.0%
CATAACTATTCAGTGTTGTA+TGG + chr6_2:73019436-73019455 Msa0928120:three_prime_UTR 30.0%
TGTATGGATATGAAATGACT+AGG + chr6_2:73019452-73019471 Msa0928120:three_prime_UTR 30.0%
! TTTGCATTTGAAGTCAATGA+GGG + chr6_2:73019611-73019630 Msa0928120:three_prime_UTR 30.0%
TCAGGAATTACGAAAAGGAA+GGG - chr6_2:73013484-73013503 None:intergenic 35.0%
ATCAGGAATTACGAAAAGGA+AGG - chr6_2:73013485-73013504 None:intergenic 35.0%
ACTAAGAATGAGGGTTTATC+AGG - chr6_2:73013502-73013521 None:intergenic 35.0%
GTGAATCGAAGAGATAGAAT+TGG - chr6_2:73013532-73013551 None:intergenic 35.0%
! TTTTCAATTTACCCAGGGTT+AGG + chr6_2:73013618-73013637 Msa0928120:intron 35.0%
AACACAAAAAACCTAACCCT+GGG - chr6_2:73013632-73013651 None:intergenic 35.0%
AAACACAAAAAACCTAACCC+TGG - chr6_2:73013633-73013652 None:intergenic 35.0%
CGCAGTAGATAAACTCAAAT+AGG + chr6_2:73013988-73014007 Msa0928120:intron 35.0%
TAGATAAACTCAAATAGGCC+CGG + chr6_2:73013993-73014012 Msa0928120:intron 35.0%
CCCTATTTGAGCTTATCTAA+TGG + chr6_2:73014120-73014139 Msa0928120:intron 35.0%
GCCATTAGATAAGCTCAAAT+AGG - chr6_2:73014124-73014143 None:intergenic 35.0%
! AATTTAGGGTCTGTTTGGAT+TGG + chr6_2:73014225-73014244 Msa0928120:intron 35.0%
AGCTTATGAAAACAGCTAAC+AGG + chr6_2:73014350-73014369 Msa0928120:intron 35.0%
CCCTTTGTGATGTAAAATTC+TGG + chr6_2:73014569-73014588 Msa0928120:intron 35.0%
!!! CTACTGGCCTAATTTTTTAG+AGG + chr6_2:73014688-73014707 Msa0928120:intron 35.0%
TAAGCTTATGCATAAGCTGT+AGG + chr6_2:73014851-73014870 Msa0928120:intron 35.0%
CTAGCACAATACAAACAAGA+AGG - chr6_2:73014940-73014959 None:intergenic 35.0%
CATTGTGCATAAAATCCTAG+GGG - chr6_2:73014968-73014987 None:intergenic 35.0%
GCATTGTGCATAAAATCCTA+GGG - chr6_2:73014969-73014988 None:intergenic 35.0%
TGCATTGTGCATAAAATCCT+AGG - chr6_2:73014970-73014989 None:intergenic 35.0%
! GTTTCATTGGACTTTTGTTG+GGG + chr6_2:73015097-73015116 Msa0928120:intron 35.0%
AAGATTTGAGTCATACATGC+CGG - chr6_2:73015228-73015247 None:intergenic 35.0%
!!! AGTGATTGTCATTTTTCCCA+TGG + chr6_2:73015347-73015366 Msa0928120:intron 35.0%
GAATACATACAGAGTTCTCT+GGG - chr6_2:73015691-73015710 None:intergenic 35.0%
AGAATACATACAGAGTTCTC+TGG - chr6_2:73015692-73015711 None:intergenic 35.0%
ATACAAAGATGGCATTCTCA+TGG + chr6_2:73015866-73015885 Msa0928120:CDS 35.0%
TTAAAAAGTTACAGGAGGAC+TGG - chr6_2:73016129-73016148 None:intergenic 35.0%
!! CAGAAGAAAAGCACTAAAAC+TGG - chr6_2:73016194-73016213 None:intergenic 35.0%
TTACTCACATGAGTTCATCA+AGG - chr6_2:73016440-73016459 None:intergenic 35.0%
! CAAGTTTAGAACACTATGAC+AGG + chr6_2:73016661-73016680 Msa0928120:intron 35.0%
!!! TGAGTGCAGAGATTTTTTGT+AGG + chr6_2:73016919-73016938 Msa0928120:intron 35.0%
!!! GAGTGCAGAGATTTTTTGTA+GGG + chr6_2:73016920-73016939 Msa0928120:intron 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr6_2:73016979-73016998 Msa0928120:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr6_2:73016980-73016999 Msa0928120:intron 35.0%
AGGTCCACAACTATTTAACT+CGG + chr6_2:73017302-73017321 Msa0928120:CDS 35.0%
TAACTCGGGTGATGTATAAT+AGG + chr6_2:73017317-73017336 Msa0928120:CDS 35.0%
!! TGTTCTTGGTGGTGTTAAAA+AGG + chr6_2:73017372-73017391 Msa0928120:CDS 35.0%
!! GTTCTTGGTGGTGTTAAAAA+GGG + chr6_2:73017373-73017392 Msa0928120:CDS 35.0%
!! TTCTTGGTGGTGTTAAAAAG+GGG + chr6_2:73017374-73017393 Msa0928120:CDS 35.0%
CTGAATGACAAGACAAAGTA+AGG - chr6_2:73017423-73017442 None:intergenic 35.0%
TGTGTTTGTGTATCTTATCC+AGG + chr6_2:73017479-73017498 Msa0928120:intron 35.0%
TAATTACGAAGACAACCATG+TGG + chr6_2:73017518-73017537 Msa0928120:CDS 35.0%
ATAAGTTGTAAATGGGGAGA+GGG - chr6_2:73017741-73017760 None:intergenic 35.0%
ATTGACCACCTAAGAAATGA+AGG + chr6_2:73018319-73018338 Msa0928120:intron 35.0%
GCCTTAGTAGCAGAAAATAA+AGG + chr6_2:73018346-73018365 Msa0928120:intron 35.0%
TCAAATAACTTTCCCTCCAT+GGG - chr6_2:73018516-73018535 None:intergenic 35.0%
GCTTACTACCATGAATGATT+TGG + chr6_2:73018779-73018798 Msa0928120:intron 35.0%
TCTGTGTAACATCAATACAC+TGG + chr6_2:73018812-73018831 Msa0928120:intron 35.0%
TTGCTTATGACCCAATTAAG+CGG + chr6_2:73018852-73018871 Msa0928120:intron 35.0%
AGGTAATAACACCTAGATGA+TGG + chr6_2:73018907-73018926 Msa0928120:intron 35.0%
TTTGTTGAATATGTTGCGTC+GGG + chr6_2:73019097-73019116 Msa0928120:intron 35.0%
!! TGATGATTTGTTTCGTTCGT+TGG + chr6_2:73019154-73019173 Msa0928120:intron 35.0%
! GTTTGCATTTGAAGTCAATG+AGG + chr6_2:73019610-73019629 Msa0928120:three_prime_UTR 35.0%
! TTGCATTTGAAGTCAATGAG+GGG + chr6_2:73019612-73019631 Msa0928120:three_prime_UTR 35.0%
TTGAAATTAGCCATGAGCTT+TGG + chr6_2:73019642-73019661 Msa0928120:three_prime_UTR 35.0%
TGCAGCTTATTTCACAAACG+TGG + chr6_2:73013758-73013777 Msa0928120:intron 40.0%
!! GCTGTTTTCATAGGCTATCT+TGG - chr6_2:73014514-73014533 None:intergenic 40.0%
AGATTTGAGTCATACATGCC+GGG - chr6_2:73015227-73015246 None:intergenic 40.0%
TGTGCGTTACAACATACCAT+GGG - chr6_2:73015366-73015385 None:intergenic 40.0%
GATGCAATACCCTTTGCAAA+CGG + chr6_2:73015495-73015514 Msa0928120:intron 40.0%
TGTGTGTTTCCGTTTGCAAA+GGG - chr6_2:73015507-73015526 None:intergenic 40.0%
TTGTGTGTTTCCGTTTGCAA+AGG - chr6_2:73015508-73015527 None:intergenic 40.0%
TAATTGAAGAGGGAGGAAGA+GGG - chr6_2:73015715-73015734 None:intergenic 40.0%
ATAATTGAAGAGGGAGGAAG+AGG - chr6_2:73015716-73015735 None:intergenic 40.0%
ATTCTCATGGCTGCTGATAT+GGG + chr6_2:73015879-73015898 Msa0928120:CDS 40.0%
AGTTAACAGAGAGAGAGCTA+TGG - chr6_2:73015941-73015960 None:intergenic 40.0%
GTTCATATGGATCTACACTG+AGG + chr6_2:73016322-73016341 Msa0928120:CDS 40.0%
TGGGGAAATAAGTGACTTTC+AGG + chr6_2:73016401-73016420 Msa0928120:intron 40.0%
ACATGTTGTCAATAAGGCTG+CGG - chr6_2:73017252-73017271 None:intergenic 40.0%
!! CAGCCTTATTGACAACATGT+GGG + chr6_2:73017252-73017271 Msa0928120:intron 40.0%
CATCCCACATGTTGTCAATA+AGG - chr6_2:73017258-73017277 None:intergenic 40.0%
ATTGACAACATGTGGGATGA+TGG + chr6_2:73017259-73017278 Msa0928120:CDS 40.0%
TTGACAACATGTGGGATGAT+GGG + chr6_2:73017260-73017279 Msa0928120:CDS 40.0%
AAATAGTTGTGGACCTCCTT+AGG - chr6_2:73017298-73017317 None:intergenic 40.0%
GGTCCACAACTATTTAACTC+GGG + chr6_2:73017303-73017322 Msa0928120:CDS 40.0%
TCACCCGAGTTAAATAGTTG+TGG - chr6_2:73017309-73017328 None:intergenic 40.0%
GCAACAAGTTCAATCCATTG+TGG + chr6_2:73017341-73017360 Msa0928120:CDS 40.0%
AGAACAAGTGAGTTCCACAA+TGG - chr6_2:73017358-73017377 None:intergenic 40.0%
TTGTGGAACTCACTTGTTCT+TGG + chr6_2:73017358-73017377 Msa0928120:CDS 40.0%
CTTATCCAGGTTAGCATGAT+TGG + chr6_2:73017492-73017511 Msa0928120:intron 40.0%
! AGTTTTCATTCCACTCATCG+CGG - chr6_2:73017581-73017600 None:intergenic 40.0%
ACGCAGCAAGAAAATGAAAC+AGG - chr6_2:73017696-73017715 None:intergenic 40.0%
GATAAGTTGTAAATGGGGAG+AGG - chr6_2:73017742-73017761 None:intergenic 40.0%
TGTACATGCTGTCACTGTTA+AGG + chr6_2:73018034-73018053 Msa0928120:intron 40.0%
AGGTAACATGTGATGTGAGT+TGG - chr6_2:73018181-73018200 None:intergenic 40.0%
CCTCATAACTCTGGACTTAA+GGG - chr6_2:73018229-73018248 None:intergenic 40.0%
TCCTCATAACTCTGGACTTA+AGG - chr6_2:73018230-73018249 None:intergenic 40.0%
AGGAAACATCCTCATAACTC+TGG - chr6_2:73018238-73018257 None:intergenic 40.0%
! TGTCAAAATTGGGGCTTTGA+AGG + chr6_2:73018431-73018450 Msa0928120:intron 40.0%
AAGTAAAAACTGAACAGGGG+TGG + chr6_2:73018483-73018502 Msa0928120:intron 40.0%
AGTAAAAACTGAACAGGGGT+GGG + chr6_2:73018484-73018503 Msa0928120:intron 40.0%
CTCAAATAACTTTCCCTCCA+TGG - chr6_2:73018517-73018536 None:intergenic 40.0%
!! TATAGGTTGATTTGTCGGCA+TGG + chr6_2:73018571-73018590 Msa0928120:intron 40.0%
!! ATAGGTTGATTTGTCGGCAT+GGG + chr6_2:73018572-73018591 Msa0928120:intron 40.0%
CTTTCCTATCATAGAGCCAT+TGG + chr6_2:73018741-73018760 Msa0928120:intron 40.0%
! CAAACCAATGGCTCTATGAT+AGG - chr6_2:73018748-73018767 None:intergenic 40.0%
!! ATCATAGAGCCATTGGTTTG+TGG + chr6_2:73018748-73018767 Msa0928120:intron 40.0%
AGAACTGTCTCGTAATTCAC+AGG - chr6_2:73018940-73018959 None:intergenic 40.0%
GTAAACAGTAGCACCTTCTT+CGG - chr6_2:73019291-73019310 None:intergenic 40.0%
GAAAACATACTGGGAGTTCT+CGG + chr6_2:73019325-73019344 Msa0928120:CDS 40.0%
ACCAACTGTTGGATTCTTGA+AGG - chr6_2:73019351-73019370 None:intergenic 40.0%
AAGTCATCATGTCTTAAGCC+AGG - chr6_2:73019690-73019709 None:intergenic 40.0%
ATCACGAACTCTCCGATTCA+AGG + chr6_2:73013402-73013421 Msa0928120:five_prime_UTR 45.0%
! TGGACTTTTGTTGGGGTTAC+AGG + chr6_2:73015104-73015123 Msa0928120:intron 45.0%
! GGACTTTTGTTGGGGTTACA+GGG + chr6_2:73015105-73015124 Msa0928120:intron 45.0%
CTGTGCGTTACAACATACCA+TGG - chr6_2:73015367-73015386 None:intergenic 45.0%
TGAATCCTTCGTCGTTGTGA+TGG + chr6_2:73015650-73015669 Msa0928120:exon 45.0%
TCTAGGTACCCATACGTAAC+TGG + chr6_2:73015822-73015841 Msa0928120:intron 45.0%
! GTATTTGATAGCAACGACGG+AGG - chr6_2:73015850-73015869 None:intergenic 45.0%
CATTCTCATGGCTGCTGATA+TGG + chr6_2:73015878-73015897 Msa0928120:CDS 45.0%
CACTAAAACTGGCCCTTGTA+AGG - chr6_2:73016183-73016202 None:intergenic 45.0%
! GTTGAGCGTTTGAAGCCTAT+TGG + chr6_2:73016354-73016373 Msa0928120:intron 45.0%
!! AGAAGGGAGTGCTTTCCAAT+AGG - chr6_2:73016372-73016391 None:intergenic 45.0%
!! ATTGGAAAGCACTCCCTTCT+TGG + chr6_2:73016372-73016391 Msa0928120:intron 45.0%
TCAAGGGTGAAATGCACAGA+AGG - chr6_2:73017172-73017191 None:intergenic 45.0%
!! GCAGCCTTATTGACAACATG+TGG + chr6_2:73017251-73017270 Msa0928120:intron 45.0%
!! TGGGATGATGGGAACTCTTT+GGG + chr6_2:73017271-73017290 Msa0928120:CDS 45.0%
TGGAACTCACTTGTTCTTGG+TGG + chr6_2:73017361-73017380 Msa0928120:CDS 45.0%
!! AAAAAGGGGCAGAAGTACCT+TGG + chr6_2:73017388-73017407 Msa0928120:CDS 45.0%
TAACGCCAATCATGCTAACC+TGG - chr6_2:73017500-73017519 None:intergenic 45.0%
AAGACAACCATGTGGCAACT+GGG + chr6_2:73017526-73017545 Msa0928120:CDS 45.0%
GGCTTGGAAATCATCTTGCT+AGG + chr6_2:73017547-73017566 Msa0928120:CDS 45.0%
! GAGTGCTTTTGTACCGTGAT+AGG + chr6_2:73017643-73017662 Msa0928120:CDS 45.0%
TGTTCACAGCAGACCTATCA+CGG - chr6_2:73017659-73017678 None:intergenic 45.0%
GTCTGCTGTGAACAAGATTC+AGG + chr6_2:73017665-73017684 Msa0928120:CDS 45.0%
TGGGCATGCTAGTTGATCAA+AGG - chr6_2:73017862-73017881 None:intergenic 45.0%
TGATCAACTAGCATGCCCAA+AGG + chr6_2:73017863-73017882 Msa0928120:intron 45.0%
CTCTGGACTTAAGGGTCATA+AGG - chr6_2:73018221-73018240 None:intergenic 45.0%
CCCTTAAGTCCAGAGTTATG+AGG + chr6_2:73018226-73018245 Msa0928120:intron 45.0%
CACAGCCTTCATTTCTTAGG+TGG - chr6_2:73018327-73018346 None:intergenic 45.0%
AGGCACAGCCTTCATTTCTT+AGG - chr6_2:73018330-73018349 None:intergenic 45.0%
ACAAACAAAACTCTCAGCCG+AGG - chr6_2:73018655-73018674 None:intergenic 45.0%
CTAGTGCAACCACAAACCAA+TGG - chr6_2:73018760-73018779 None:intergenic 45.0%
! GATTTTGCGGCCGCTTAATT+GGG - chr6_2:73018865-73018884 None:intergenic 45.0%
! AGATTTTGCGGCCGCTTAAT+TGG - chr6_2:73018866-73018885 None:intergenic 45.0%
AATTAAGCGGCCGCAAAATC+TGG + chr6_2:73018865-73018884 Msa0928120:intron 45.0%
! TAGCCACTGACCAGATTTTG+CGG - chr6_2:73018878-73018897 None:intergenic 45.0%
GCCTTCAAGAATCCAACAGT+TGG + chr6_2:73019347-73019366 Msa0928120:CDS 45.0%
!! AATCCAACAGTTGGTGCTGA+AGG + chr6_2:73019356-73019375 Msa0928120:CDS 45.0%
TTGTGAGGAACCAAAGCTCA+TGG - chr6_2:73019655-73019674 None:intergenic 45.0%
!! GAAATTAATTATTAATTATA+GGG - chr6_2:73017023-73017042 None:intergenic 5.0%
!! TGAAATTAATTATTAATTAT+AGG - chr6_2:73017024-73017043 None:intergenic 5.0%
GAGAGAGAGAAGAGAGAGAG+AGG - chr6_2:73013441-73013460 None:intergenic 50.0%
ATTGTGCTAGAACAGCCCCT+AGG + chr6_2:73014950-73014969 Msa0928120:intron 50.0%
AGTGTCCATCACAACGACGA+AGG - chr6_2:73015658-73015677 None:intergenic 50.0%
CGGAGGATCCAGTTACGTAT+GGG - chr6_2:73015833-73015852 None:intergenic 50.0%
ACGGAGGATCCAGTTACGTA+TGG - chr6_2:73015834-73015853 None:intergenic 50.0%
!! ACTCCCTTCTTGGTGCTAGT+GGG + chr6_2:73016382-73016401 Msa0928120:intron 50.0%
TTCCCCACTAGCACCAAGAA+GGG - chr6_2:73016388-73016407 None:intergenic 50.0%
TTTCCCCACTAGCACCAAGA+AGG - chr6_2:73016389-73016408 None:intergenic 50.0%
!! GTGGGATGATGGGAACTCTT+TGG + chr6_2:73017270-73017289 Msa0928120:CDS 50.0%
!! TGGGAACTCTTTGGGACCTA+AGG + chr6_2:73017279-73017298 Msa0928120:CDS 50.0%
!! GAACTCTTTGGGACCTAAGG+AGG + chr6_2:73017282-73017301 Msa0928120:CDS 50.0%
AAGTAAGGCATACCGTGCCA+AGG - chr6_2:73017408-73017427 None:intergenic 50.0%
GTCATTCAGTCCGACAGTTG+AGG + chr6_2:73017434-73017453 Msa0928120:intron 50.0%
CAGGTAGGTACCTCAACTGT+CGG - chr6_2:73017447-73017466 None:intergenic 50.0%
GAAGACAACCATGTGGCAAC+TGG + chr6_2:73017525-73017544 Msa0928120:CDS 50.0%
TTCCACTCATCGCGGAGAAT+TGG - chr6_2:73017573-73017592 None:intergenic 50.0%
AGTTGTAAATGGGGAGAGGG+AGG - chr6_2:73017738-73017757 None:intergenic 50.0%
AGGATGTCGCGTTCAGATCT+AGG - chr6_2:73018201-73018220 None:intergenic 50.0%
! TCTGGTCAGTGGCTAGTTAC+TGG + chr6_2:73018883-73018902 Msa0928120:intron 50.0%
! GTCAGTGGCTAGTTACTGGA+AGG + chr6_2:73018887-73018906 Msa0928120:intron 50.0%
CAGGCAAGCAACCATCATCT+AGG - chr6_2:73018921-73018940 None:intergenic 50.0%
CACGGATGCTGAACAAGATG+AGG - chr6_2:73018994-73019013 None:intergenic 50.0%
! TTAAGTTTAGGGCGCAGTGC+AGG - chr6_2:73019134-73019153 None:intergenic 50.0%
GAACCTTCAGCACCAACTGT+TGG - chr6_2:73019362-73019381 None:intergenic 50.0%
!! CAGTTGGTGCTGAAGGTTCA+TGG + chr6_2:73019363-73019382 Msa0928120:CDS 50.0%
! GAGCTTTGGTTCCTCACAAC+CGG + chr6_2:73019656-73019675 Msa0928120:three_prime_UTR 50.0%
! AGCTTTGGTTCCTCACAACC+GGG + chr6_2:73019657-73019676 Msa0928120:three_prime_UTR 50.0%
CTCATGGCTGCTGATATGGG+AGG + chr6_2:73015882-73015901 Msa0928120:CDS 55.0%
!! CACTCCCTTCTTGGTGCTAG+TGG + chr6_2:73016381-73016400 Msa0928120:intron 55.0%
!! CTCCCTTCTTGGTGCTAGTG+GGG + chr6_2:73016383-73016402 Msa0928120:intron 55.0%
AACCATGTGGCAACTGGGCT+TGG + chr6_2:73017531-73017550 Msa0928120:CDS 55.0%
TTCCAAGCCCAGTTGCCACA+TGG - chr6_2:73017536-73017555 None:intergenic 55.0%
GATTTGTCGGCATGGGAGTC+TGG + chr6_2:73018579-73018598 Msa0928120:intron 55.0%
! CACGCCAGACTGTTTCTCCT+CGG + chr6_2:73018635-73018654 Msa0928120:intron 55.0%
TCAGCCGAGGAGAAACAGTC+TGG - chr6_2:73018642-73018661 None:intergenic 55.0%
! GCTTTGGTTCCTCACAACCG+GGG + chr6_2:73019658-73019677 Msa0928120:three_prime_UTR 55.0%
! CTTTGGTTCCTCACAACCGG+GGG + chr6_2:73019659-73019678 Msa0928120:three_prime_UTR 55.0%
!! GGGGCAGAAGTACCTTGGCA+CGG + chr6_2:73017393-73017412 Msa0928120:CDS 60.0%
GGCCAATTCTCCGCGATGAG+TGG + chr6_2:73017568-73017587 Msa0928120:CDS 60.0%
CGAGGAGAAACAGTCTGGCG+TGG - chr6_2:73018637-73018656 None:intergenic 60.0%
CGGCCGCAAAATCTGGTCAG+TGG + chr6_2:73018872-73018891 Msa0928120:intron 60.0%
CTTAAGCCAGGATCCACCCC+CGG - chr6_2:73019678-73019697 None:intergenic 60.0%
! GGTGGGCTTGCACCCATGGA+GGG + chr6_2:73018501-73018520 Msa0928120:intron 65.0%
TGGTTCCTCACAACCGGGGG+TGG + chr6_2:73019662-73019681 Msa0928120:three_prime_UTR 65.0%
AGGATCCACCCCCGGTTGTG+AGG - chr6_2:73019670-73019689 None:intergenic 65.0%
TCACAACCGGGGGTGGATCC+TGG + chr6_2:73019669-73019688 Msa0928120:three_prime_UTR 65.0%
! CAGGGGTGGGCTTGCACCCA+TGG + chr6_2:73018497-73018516 Msa0928120:intron 70.0%
! GGGTGGGCTTGCACCCATGG+AGG + chr6_2:73018500-73018519 Msa0928120:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 73013208 73019722 73013208 ID=Msa0928120;Name=Msa0928120
chr6_2 mRNA 73013208 73019722 73013208 ID=Msa0928120-mRNA-1;Parent=Msa0928120;Name=Msa0928120-mRNA-1;_AED=0.16;_eAED=0.16;_QI=250|0.83|0.85|1|0.83|0.71|7|334|196
chr6_2 exon 73013208 73013423 73013208 ID=Msa0928120-mRNA-1:exon:12417;Parent=Msa0928120-mRNA-1
chr6_2 exon 73015635 73015700 73015635 ID=Msa0928120-mRNA-1:exon:12418;Parent=Msa0928120-mRNA-1
chr6_2 exon 73015827 73015903 73015827 ID=Msa0928120-mRNA-1:exon:12419;Parent=Msa0928120-mRNA-1
chr6_2 exon 73016322 73016343 73016322 ID=Msa0928120-mRNA-1:exon:12420;Parent=Msa0928120-mRNA-1
chr6_2 exon 73017255 73017414 73017255 ID=Msa0928120-mRNA-1:exon:12421;Parent=Msa0928120-mRNA-1
chr6_2 exon 73017501 73017686 73017501 ID=Msa0928120-mRNA-1:exon:12422;Parent=Msa0928120-mRNA-1
chr6_2 exon 73019275 73019722 73019275 ID=Msa0928120-mRNA-1:exon:12423;Parent=Msa0928120-mRNA-1
chr6_2 five_prime_UTR 73013208 73013423 73013208 ID=Msa0928120-mRNA-1:five_prime_utr;Parent=Msa0928120-mRNA-1
chr6_2 five_prime_UTR 73015635 73015668 73015635 ID=Msa0928120-mRNA-1:five_prime_utr;Parent=Msa0928120-mRNA-1
chr6_2 CDS 73015669 73015700 73015669 ID=Msa0928120-mRNA-1:cds;Parent=Msa0928120-mRNA-1
chr6_2 CDS 73015827 73015903 73015827 ID=Msa0928120-mRNA-1:cds;Parent=Msa0928120-mRNA-1
chr6_2 CDS 73016322 73016343 73016322 ID=Msa0928120-mRNA-1:cds;Parent=Msa0928120-mRNA-1
chr6_2 CDS 73017255 73017414 73017255 ID=Msa0928120-mRNA-1:cds;Parent=Msa0928120-mRNA-1
chr6_2 CDS 73017501 73017686 73017501 ID=Msa0928120-mRNA-1:cds;Parent=Msa0928120-mRNA-1
chr6_2 CDS 73019275 73019388 73019275 ID=Msa0928120-mRNA-1:cds;Parent=Msa0928120-mRNA-1
chr6_2 three_prime_UTR 73019389 73019722 73019389 ID=Msa0928120-mRNA-1:three_prime_utr;Parent=Msa0928120-mRNA-1
Gene Sequence

>Msa0928120

ATGGACACTGTAACTGAATCCCAGAGAACTCTGTACCCATACGTAACTGGATCCTCCGTCGTTGCTATCAAATACAAAGATGGCATTCTCATGGCTGCTGATATGGGAGGTTCATATGGATCTACACTGAGCCTTATTGACAACATGTGGGATGATGGGAACTCTTTGGGACCTAAGGAGGTCCACAACTATTTAACTCGGGTGATGTATAATAGGCGCAACAAGTTCAATCCATTGTGGAACTCACTTGTTCTTGGTGGTGTTAAAAAGGGGCAGAAGTACCTTGGCACGGTTAGCATGATTGGCGTTAATTACGAAGACAACCATGTGGCAACTGGGCTTGGAAATCATCTTGCTAGGCCAATTCTCCGCGATGAGTGGAATGAAAACTTGACATTTGAAGAAGGTGTCAAGTTACTCGAAAAATGCATGCGAGTGCTTTTGTACCGTGATAGGTCTGCTGTGAACAAGATTCAGATATCTAAAATTACCGAAGAAGGTGCTACTGTTTACCCACCATTCTCTTTGAAAACATACTGGGAGTTCTCGGCCTTCAAGAATCCAACAGTTGGTGCTGAAGGTTCATGGTAG

Protein sequence

>Msa0928120

MDTVTESQRTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLSLIDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNSLVLGGVKKGQKYLGTVSMIGVNYEDNHVATGLGNHLARPILRDEWNENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQISKITEEGATVYPPFSLKTYWEFSAFKNPTVGAEGSW*