Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973420 | XP_003618430.1 | 93.016 | 315 | 19 | 3 | 1 | 314 | 1 | 313 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973420 | sp|Q8L970|P4H7_ARATH | 64.444 | 315 | 102 | 3 | 6 | 314 | 6 | 316 | 1.32e-148 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973420 | B7FKS2 | 93.016 | 315 | 19 | 3 | 1 | 314 | 1 | 313 | 0.0 | 590 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0689440 | Msa0973420 | 0.820988 | 5.126024e-53 | -8.615850e-47 |
| Msa0693210 | Msa0973420 | 0.806377 | 8.471483e-50 | -8.615850e-47 |
| Msa0149440 | Msa0973420 | 0.806472 | 8.091739e-50 | -8.615850e-47 |
| Msa0215990 | Msa0973420 | 0.804943 | 1.694723e-49 | -8.615850e-47 |
| Msa0377820 | Msa0973420 | 0.812400 | 4.321094e-51 | -8.615850e-47 |
| Msa0385500 | Msa0973420 | 0.807036 | 6.149480e-50 | -8.615850e-47 |
| Msa0462600 | Msa0973420 | 0.805093 | 1.576717e-49 | -8.615850e-47 |
| Msa0472930 | Msa0973420 | 0.802350 | 5.850210e-49 | -8.615850e-47 |
| Msa0256140 | Msa0973420 | 0.807919 | 3.995077e-50 | -8.615850e-47 |
| Msa0870750 | Msa0973420 | 0.946201 | 7.249912e-105 | -8.615850e-47 |
| Msa0903870 | Msa0973420 | 0.924121 | 1.074387e-89 | -8.615850e-47 |
| Msa0936480 | Msa0973420 | 0.910557 | 1.639105e-82 | -8.615850e-47 |
| Msa0973420 | Msa1027070 | 0.823589 | 1.276830e-53 | -8.615850e-47 |
| Msa0973420 | Msa1065240 | 0.819245 | 1.284995e-52 | -8.615850e-47 |
| Msa0973420 | Msa1315890 | 0.803736 | 3.023090e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973420 | MtrunA17_Chr6g0452281 | 93.016 | 315 | 19 | 3 | 1 | 314 | 1 | 313 | 0.0 | 590 |
| Msa0973420 | MtrunA17_Chr2g0286811 | 60.424 | 283 | 101 | 3 | 36 | 312 | 26 | 303 | 6.92e-122 | 352 |
| Msa0973420 | MtrunA17_Chr4g0066531 | 59.041 | 271 | 104 | 2 | 45 | 312 | 32 | 298 | 7.35e-115 | 333 |
| Msa0973420 | MtrunA17_Chr3g0143381 | 50.769 | 260 | 119 | 3 | 9 | 259 | 20 | 279 | 2.64e-86 | 260 |
| Msa0973420 | MtrunA17_Chr5g0406051 | 55.450 | 211 | 93 | 1 | 50 | 259 | 78 | 288 | 3.08e-82 | 250 |
| Msa0973420 | MtrunA17_Chr8g0371281 | 50.840 | 238 | 112 | 3 | 23 | 258 | 41 | 275 | 1.40e-80 | 245 |
| Msa0973420 | MtrunA17_Chr8g0371221 | 51.883 | 239 | 111 | 3 | 23 | 259 | 41 | 277 | 1.41e-80 | 246 |
| Msa0973420 | MtrunA17_Chr8g0371251 | 47.899 | 238 | 123 | 1 | 23 | 259 | 41 | 278 | 1.37e-76 | 235 |
| Msa0973420 | MtrunA17_Chr8g0371231 | 50.000 | 198 | 98 | 1 | 62 | 258 | 4 | 201 | 3.32e-69 | 214 |
| Msa0973420 | MtrunA17_Chr6g0470551 | 38.585 | 311 | 164 | 8 | 9 | 312 | 7 | 297 | 1.44e-64 | 205 |
| Msa0973420 | MtrunA17_Chr3g0143361 | 52.299 | 174 | 78 | 1 | 82 | 255 | 1 | 169 | 3.08e-59 | 188 |
| Msa0973420 | MtrunA17_Chr1g0213811 | 47.115 | 208 | 93 | 3 | 53 | 253 | 78 | 275 | 9.08e-59 | 190 |
| Msa0973420 | MtrunA17_Chr8g0371241 | 50.568 | 176 | 69 | 3 | 82 | 256 | 1 | 159 | 3.73e-54 | 174 |
| Msa0973420 | MtrunA17_Chr4g0053801 | 39.744 | 234 | 133 | 5 | 29 | 259 | 66 | 294 | 3.90e-49 | 166 |
| Msa0973420 | MtrunA17_Chr3g0143371 | 49.045 | 157 | 74 | 2 | 82 | 237 | 1 | 152 | 1.34e-45 | 152 |
| Msa0973420 | MtrunA17_Chr3g0143351 | 45.856 | 181 | 86 | 3 | 82 | 259 | 1 | 172 | 2.73e-44 | 149 |
| Msa0973420 | MtrunA17_Chr5g0401481 | 37.557 | 221 | 114 | 6 | 53 | 253 | 86 | 302 | 3.88e-41 | 145 |
| Msa0973420 | MtrunA17_Chr3g0098671 | 55.738 | 61 | 22 | 2 | 132 | 190 | 31 | 88 | 2.97e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973420 | AT3G28480.1 | 64.444 | 315 | 102 | 3 | 6 | 314 | 6 | 316 | 1.34e-149 | 422 |
| Msa0973420 | AT3G28480.2 | 60.372 | 323 | 110 | 5 | 6 | 314 | 6 | 324 | 1.84e-136 | 390 |
| Msa0973420 | AT3G28490.1 | 66.791 | 268 | 81 | 2 | 46 | 312 | 28 | 288 | 9.47e-132 | 376 |
| Msa0973420 | AT5G18900.1 | 58.242 | 273 | 107 | 2 | 43 | 312 | 30 | 298 | 7.64e-113 | 329 |
| Msa0973420 | AT3G06300.1 | 59.328 | 268 | 100 | 3 | 49 | 312 | 37 | 299 | 2.46e-111 | 325 |
| Msa0973420 | AT1G20270.1 | 56.250 | 208 | 90 | 1 | 53 | 259 | 79 | 286 | 1.15e-80 | 246 |
| Msa0973420 | AT4G35810.1 | 57.005 | 207 | 88 | 1 | 53 | 258 | 83 | 289 | 3.46e-80 | 245 |
| Msa0973420 | AT4G35810.2 | 57.005 | 207 | 88 | 1 | 53 | 258 | 83 | 289 | 3.46e-80 | 245 |
| Msa0973420 | AT5G66060.1 | 55.924 | 211 | 92 | 1 | 50 | 259 | 78 | 288 | 1.12e-79 | 244 |
| Msa0973420 | AT2G17720.1 | 54.502 | 211 | 95 | 1 | 50 | 259 | 80 | 290 | 5.74e-79 | 242 |
| Msa0973420 | AT4G25600.1 | 44.203 | 276 | 121 | 8 | 38 | 312 | 48 | 291 | 3.75e-70 | 220 |
| Msa0973420 | AT4G25600.3 | 43.254 | 252 | 111 | 7 | 62 | 312 | 10 | 230 | 6.14e-62 | 197 |
| Msa0973420 | AT4G25600.2 | 43.254 | 252 | 111 | 7 | 62 | 312 | 19 | 239 | 7.52e-62 | 197 |
| Msa0973420 | AT4G25600.4 | 43.254 | 252 | 111 | 7 | 62 | 312 | 7 | 227 | 7.58e-62 | 196 |
| Msa0973420 | AT2G43080.1 | 46.569 | 204 | 102 | 2 | 53 | 254 | 80 | 278 | 3.21e-58 | 189 |
| Msa0973420 | AT5G66060.2 | 54.321 | 162 | 71 | 2 | 50 | 210 | 78 | 237 | 2.05e-53 | 175 |
| Msa0973420 | AT4G35820.1 | 43.478 | 207 | 87 | 4 | 40 | 237 | 77 | 262 | 5.46e-47 | 159 |
| Msa0973420 | AT4G33910.1 | 38.912 | 239 | 136 | 6 | 26 | 260 | 56 | 288 | 1.59e-46 | 159 |
| Msa0973420 | AT2G23096.1 | 39.801 | 201 | 118 | 2 | 53 | 253 | 71 | 268 | 2.29e-45 | 155 |
| Msa0973420 | AT1G20270.2 | 55.285 | 123 | 55 | 0 | 53 | 175 | 79 | 201 | 1.35e-43 | 148 |
| Msa0973420 | AT1G20270.3 | 55.285 | 123 | 55 | 0 | 53 | 175 | 79 | 201 | 1.35e-43 | 148 |
| Msa0973420 | AT2G43080.2 | 44.444 | 90 | 48 | 1 | 53 | 140 | 80 | 169 | 6.68e-19 | 83.6 |
Find 72 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGTTAATTAAATGTTAAT+TGG | 0.206561 | 6_4:+5910341 | None:intergenic |
| CTTTAGGATGAAATAGTTTC+TGG | 0.221539 | 6_4:-5906966 | Msa0973420:intron |
| TCTGACCAGCTCTCATCTTT+TGG | 0.243925 | 6_4:+5906506 | None:intergenic |
| GTTGGTAATGGAGGAGTTAA+AGG | 0.311233 | 6_4:-5905558 | Msa0973420:CDS |
| TTCAATTCGATTACCTGGTT+TGG | 0.335287 | 6_4:-5910131 | Msa0973420:CDS |
| AGTGAAGTCAGAACTAGTTC+TGG | 0.346124 | 6_4:-5908178 | Msa0973420:CDS |
| ATGTGATCATCTTATTGAAT+TGG | 0.366986 | 6_4:-5909672 | Msa0973420:intron |
| GATTCCCACAGATTTGAGTT+TGG | 0.395465 | 6_4:+5910389 | None:intergenic |
| GAGATTTATTTGTAAAGGAA+AGG | 0.436384 | 6_4:+5905380 | None:intergenic |
| AATAAGAGAGATTAGAGAGA+GGG | 0.438010 | 6_4:+5910289 | None:intergenic |
| TCCTCCAATGCTTGTCGTAT+CGG | 0.438442 | 6_4:+5905663 | None:intergenic |
| GGATAAGCTGGAGAAGTCTA+TGG | 0.438907 | 6_4:-5908233 | Msa0973420:CDS |
| AAGGAGAGATTTATTTGTAA+AGG | 0.449994 | 6_4:+5905375 | None:intergenic |
| CCACGTTATATGGTTGGTAA+TGG | 0.471479 | 6_4:-5905570 | Msa0973420:CDS |
| AGACATTTGTTAAATGTGAA+AGG | 0.472931 | 6_4:+5905356 | None:intergenic |
| ATGGTGGCGGATAATGAATC+TGG | 0.474853 | 6_4:-5908214 | Msa0973420:CDS |
| GTTTCTTCAATTCGATTACC+TGG | 0.479234 | 6_4:-5910136 | Msa0973420:CDS |
| ATTATAGTCGAAGGATAAGC+TGG | 0.486883 | 6_4:-5908245 | Msa0973420:intron |
| GTGAAGTCAGAACTAGTTCT+GGG | 0.490315 | 6_4:-5908177 | Msa0973420:CDS |
| CACTTCTCACCTTCAATCAC+TGG | 0.491510 | 6_4:+5905726 | None:intergenic |
| AGATTTATTTGTAAAGGAAA+GGG | 0.496125 | 6_4:+5905381 | None:intergenic |
| TCTTCTTAGAGAGGTTATCA+TGG | 0.503180 | 6_4:-5905507 | Msa0973420:exon |
| CTCAGCTCTCGTGGAGTCCT+AGG | 0.504470 | 6_4:-5909934 | Msa0973420:intron |
| GATGTTTCTCAACAAGCAAC+AGG | 0.508440 | 6_4:-5908155 | Msa0973420:intron |
| CGACAAGCATTGGAGGATGA+TGG | 0.516551 | 6_4:-5905657 | Msa0973420:CDS |
| TGTGCTCACAAAGGATATGC+AGG | 0.524271 | 6_4:-5906482 | Msa0973420:intron |
| CGCAGCCAAAAGATGAGAGC+TGG | 0.532075 | 6_4:-5906511 | Msa0973420:CDS |
| TTGTCTAATGTTGAGAAGGG+TGG | 0.535297 | 6_4:-5906690 | Msa0973420:CDS |
| AAGAAAGGAGTTCTCCTCTA+GGG | 0.542203 | 6_4:-5905410 | Msa0973420:three_prime_UTR |
| AACTGAATAGAAATGAAGAA+AGG | 0.546047 | 6_4:-5905425 | Msa0973420:three_prime_UTR |
| GAAGAAAGGAGTTCTCCTCT+AGG | 0.547386 | 6_4:-5905411 | Msa0973420:three_prime_UTR |
| AAATAAGAGAGATTAGAGAG+AGG | 0.547974 | 6_4:+5910288 | None:intergenic |
| ACCGATACGACAAGCATTGG+AGG | 0.549713 | 6_4:-5905664 | Msa0973420:CDS |
| TGTGCTAGGTGGGCTAAAGT+TGG | 0.553043 | 6_4:-5905609 | Msa0973420:CDS |
| ACAATGGAAGAAAACGAGGT+TGG | 0.559292 | 6_4:+5910185 | None:intergenic |
| GAAACCGATACGACAAGCAT+TGG | 0.562936 | 6_4:-5905667 | Msa0973420:CDS |
| GTCGTTGATTAGCCTTGTCG+TGG | 0.563771 | 6_4:+5906748 | None:intergenic |
| TCGTATCGGTTTCTCAAAGT+CGG | 0.564192 | 6_4:+5905677 | None:intergenic |
| GGAAGCTGTCCAGTGATTGA+AGG | 0.566220 | 6_4:-5905735 | Msa0973420:CDS |
| AATGTTTGCTCTTCTTAGAG+AGG | 0.567861 | 6_4:-5905516 | Msa0973420:exon |
| CGTTATATGGTTGGTAATGG+AGG | 0.570195 | 6_4:-5905567 | Msa0973420:CDS |
| GATTTCAGTAAAACCTCGGA+AGG | 0.570685 | 6_4:-5905820 | Msa0973420:intron |
| CACGTGTTACTCAGCTCTCG+TGG | 0.573617 | 6_4:-5909943 | Msa0973420:CDS |
| AAGGCTAATCAACGACTTGG+CGG | 0.579353 | 6_4:-5906741 | Msa0973420:CDS |
| GCTGGAGAAGTCTATGGTGG+CGG | 0.585914 | 6_4:-5908227 | Msa0973420:CDS |
| CTGTGATTTCAGTAAAACCT+CGG | 0.587062 | 6_4:-5905824 | Msa0973420:intron |
| GACAAGGCTAATCAACGACT+TGG | 0.590163 | 6_4:-5906744 | Msa0973420:CDS |
| CAAGTATTGCACTACATGAA+CGG | 0.597351 | 6_4:-5906801 | Msa0973420:CDS |
| TGGCGGCCATCGTGTTGCAA+CGG | 0.600471 | 6_4:-5906724 | Msa0973420:CDS |
| GTATTTGTCTAATGTTGAGA+AGG | 0.600995 | 6_4:-5906694 | Msa0973420:CDS |
| AACAAGGCGTCACCCTTCCG+AGG | 0.602551 | 6_4:+5905807 | None:intergenic |
| AGACGCCAAACTCAAATCTG+TGG | 0.603988 | 6_4:-5910394 | Msa0973420:five_prime_UTR |
| GACGCCAAACTCAAATCTGT+GGG | 0.606114 | 6_4:-5910393 | Msa0973420:five_prime_UTR |
| TATTTGTCTAATGTTGAGAA+GGG | 0.614235 | 6_4:-5906693 | Msa0973420:CDS |
| GAATGAGAATTGTGCTAGGT+GGG | 0.627537 | 6_4:-5905619 | Msa0973420:CDS |
| ATGAGAATGAGAATTGTGCT+AGG | 0.631627 | 6_4:-5905623 | Msa0973420:CDS |
| AGAAGTGGTCAGCAACAAAG+TGG | 0.631807 | 6_4:-5905710 | Msa0973420:CDS |
| CCATTACCAACCATATAACG+TGG | 0.638057 | 6_4:+5905570 | None:intergenic |
| GAAAGTCTTACCTCGGCATG+AGG | 0.646247 | 6_4:+5906654 | None:intergenic |
| TTGAAGCACGAATTGCCGCA+TGG | 0.649902 | 6_4:-5906941 | Msa0973420:CDS |
| TCGTGGAAGAAATCAAAATG+TGG | 0.654542 | 6_4:+5906765 | None:intergenic |
| AGAATGAGAATTGTGCTAGG+TGG | 0.675466 | 6_4:-5905620 | Msa0973420:CDS |
| TGGTCAGAATGTGCTCACAA+AGG | 0.676168 | 6_4:-5906491 | Msa0973420:CDS |
| CAGTGATTGAAGGTGAGAAG+TGG | 0.688855 | 6_4:-5905725 | Msa0973420:CDS |
| TAAGCTGGAGAAGTCTATGG+TGG | 0.689131 | 6_4:-5908230 | Msa0973420:CDS |
| AGTAACAATGGAAGAAAACG+AGG | 0.692940 | 6_4:+5910181 | None:intergenic |
| GCATGGACATTCCTTCCCGT+AGG | 0.694487 | 6_4:-5906924 | Msa0973420:intron |
| GAGAGCTGAGTAACACGTGT+CGG | 0.695014 | 6_4:+5909947 | None:intergenic |
| ATTTCAGTAAAACCTCGGAA+GGG | 0.704588 | 6_4:-5905819 | Msa0973420:intron |
| TCAGCACCGTTGCAACACGA+TGG | 0.711185 | 6_4:+5906718 | None:intergenic |
| TACGGGAAGGAATGTCCATG+CGG | 0.724567 | 6_4:+5906926 | None:intergenic |
| ATGAAGACTGAAGAACAACA+AGG | 0.733543 | 6_4:+5905791 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTTAATTAAATGTTAAT+TGG | + | chr6_4:5905403-5905422 | None:intergenic | 10.0% |
| !! | ATAAAAAATTATAGTAAACA+AGG | - | chr6_4:5907937-5907956 | Msa0973420:intron | 10.0% |
| !! | TAAAAAATTATAGTAAACAA+GGG | - | chr6_4:5907938-5907957 | Msa0973420:intron | 10.0% |
| !!! | AAAATCTTATCTTTTTTTGT+TGG | - | chr6_4:5905709-5905728 | Msa0973420:CDS | 15.0% |
| !!! | AAATCTTATCTTTTTTTGTT+GGG | - | chr6_4:5905710-5905729 | Msa0973420:CDS | 15.0% |
| !!! | TTTGATTTTTTTTATTGTTG+TGG | - | chr6_4:5905888-5905907 | Msa0973420:intron | 15.0% |
| !!! | GTTTTTTTAGTGATTATTAT+TGG | - | chr6_4:5906095-5906114 | Msa0973420:intron | 15.0% |
| !! | TCTGAAAATATGTTTATAAA+CGG | - | chr6_4:5906622-5906641 | Msa0973420:intron | 15.0% |
| !!! | AATCTTATCTTTTTTTGTTG+GGG | - | chr6_4:5905711-5905730 | Msa0973420:CDS | 20.0% |
| !!! | GTTTTCAATTTTTTGTTTTC+AGG | - | chr6_4:5905735-5905754 | Msa0973420:CDS | 20.0% |
| !!! | TTAGTGATTATTATTGGTTT+TGG | - | chr6_4:5906101-5906120 | Msa0973420:intron | 20.0% |
| !!! | TCTACTTATAAACACATTTT+CGG | + | chr6_4:5906352-5906371 | None:intergenic | 20.0% |
| !! | CTGAAAATATGTTTATAAAC+GGG | - | chr6_4:5906623-5906642 | Msa0973420:intron | 20.0% |
| !!! | CTGAAAATATTTTTATACGT+GGG | - | chr6_4:5907388-5907407 | Msa0973420:intron | 20.0% |
| !! | TAGTGTCTATTTGAATATAA+TGG | - | chr6_4:5908396-5908415 | Msa0973420:intron | 20.0% |
| !! | TACAAATATTTGTAGAGAAA+GGG | + | chr6_4:5908454-5908473 | None:intergenic | 20.0% |
| !! | TTACAAATATTTGTAGAGAA+AGG | + | chr6_4:5908455-5908474 | None:intergenic | 20.0% |
| !! | AAAGATTAAACAAAAGAAAG+AGG | + | chr6_4:5908759-5908778 | None:intergenic | 20.0% |
| !!! | CTTTCTTTTGTTTAATCTTT+AGG | - | chr6_4:5908759-5908778 | Msa0973420:intron | 20.0% |
| !! | ACAAATAGATTAATCAAAAC+AGG | + | chr6_4:5909407-5909426 | None:intergenic | 20.0% |
| !!! | AAATACTTTTAAGACTGTTT+AGG | - | chr6_4:5909493-5909512 | Msa0973420:intron | 20.0% |
| !! | AATAAGCTGAAAACAATTTA+TGG | + | chr6_4:5909549-5909568 | None:intergenic | 20.0% |
| !! | AGATTTATTTGTAAAGGAAA+GGG | + | chr6_4:5910363-5910382 | None:intergenic | 20.0% |
| ! | AGAAAGAGAATTGAAGAAAT+GGG | + | chr6_4:5905671-5905690 | None:intergenic | 25.0% |
| ! | AAGAAAGAGAATTGAAGAAA+TGG | + | chr6_4:5905672-5905691 | None:intergenic | 25.0% |
| ! | AAAAAAGGTTTATACTACCT+AGG | + | chr6_4:5905827-5905846 | None:intergenic | 25.0% |
| ! | TTTGAACAACACAAGAAAAA+AGG | + | chr6_4:5905842-5905861 | None:intergenic | 25.0% |
| !!! | TTTTTCTTGTGTTGTTCAAA+AGG | - | chr6_4:5905842-5905861 | Msa0973420:intron | 25.0% |
| !!! | TTTTCTTGTGTTGTTCAAAA+GGG | - | chr6_4:5905843-5905862 | Msa0973420:intron | 25.0% |
| ! | ATGTGATCATCTTATTGAAT+TGG | - | chr6_4:5906069-5906088 | Msa0973420:intron | 25.0% |
| ! | CTAATTCAAACCTATAAAAC+CGG | + | chr6_4:5906396-5906415 | None:intergenic | 25.0% |
| ! | AAAATATGTTTATAAACGGG+AGG | - | chr6_4:5906626-5906645 | Msa0973420:intron | 25.0% |
| !! | TTGTTTATACAGAAGACTTT+TGG | + | chr6_4:5906813-5906832 | None:intergenic | 25.0% |
| !! | CTGCTTAAAAACATATTTTC+AGG | + | chr6_4:5906959-5906978 | None:intergenic | 25.0% |
| !!! | CTGAAAATATGTTTTTAAGC+AGG | - | chr6_4:5906957-5906976 | Msa0973420:CDS | 25.0% |
| !!! | CCACTGTAAGATTTTTTTTA+AGG | + | chr6_4:5907183-5907202 | None:intergenic | 25.0% |
| ! | CCTTAAAAAAAATCTTACAG+TGG | - | chr6_4:5907180-5907199 | Msa0973420:intron | 25.0% |
| !! | CCACGTATAAAAATATTTTC+AGG | + | chr6_4:5907390-5907409 | None:intergenic | 25.0% |
| !!! | CCTGAAAATATTTTTATACG+TGG | - | chr6_4:5907387-5907406 | Msa0973420:intron | 25.0% |
| !!! | AAAATATTTTTATACGTGGG+AGG | - | chr6_4:5907391-5907410 | Msa0973420:intron | 25.0% |
| !! | TTTTGTGATATTATAGTCGA+AGG | - | chr6_4:5907487-5907506 | Msa0973420:intron | 25.0% |
| ! | TACATGTCAAAATTCATCAT+AGG | - | chr6_4:5907635-5907654 | Msa0973420:intron | 25.0% |
| !!! | ATTGTTTTTATTCCAACACA+TGG | - | chr6_4:5907709-5907728 | Msa0973420:intron | 25.0% |
| !! | AAATGTGTTAGAAACTTGTT+TGG | - | chr6_4:5907794-5907813 | Msa0973420:intron | 25.0% |
| ! | GATCAATCTCATAAAAATGT+TGG | + | chr6_4:5907824-5907843 | None:intergenic | 25.0% |
| !! | ATTTTTATGAGATTGATCCA+TGG | - | chr6_4:5907826-5907845 | Msa0973420:intron | 25.0% |
| !! | AACACAGATTCATAATGTTT+TGG | + | chr6_4:5907986-5908005 | None:intergenic | 25.0% |
| !!! | TGTAACTTGATAATGATGAA+TGG | + | chr6_4:5908256-5908275 | None:intergenic | 25.0% |
| ! | TCATCATTATCAAGTTACAA+AGG | - | chr6_4:5908257-5908276 | Msa0973420:intron | 25.0% |
| ! | CTGGTAACAATTTAATAAAC+TGG | + | chr6_4:5908549-5908568 | None:intergenic | 25.0% |
| ! | CTTCATAAGAAAGAATTTGT+AGG | + | chr6_4:5908620-5908639 | None:intergenic | 25.0% |
| ! | CTGAAACAAAAAACCTAAAA+CGG | + | chr6_4:5908871-5908890 | None:intergenic | 25.0% |
| ! | TATTTGTCTAATGTTGAGAA+GGG | - | chr6_4:5909048-5909067 | Msa0973420:intron | 25.0% |
| ! | TTCACATGTATTTGATTATC+TGG | - | chr6_4:5909107-5909126 | Msa0973420:intron | 25.0% |
| !!! | AGTAATTTGATTGCTTTTTC+AGG | - | chr6_4:5909198-5909217 | Msa0973420:intron | 25.0% |
| !!! | GTAATTTGATTGCTTTTTCA+GGG | - | chr6_4:5909199-5909218 | Msa0973420:intron | 25.0% |
| !!! | TAATTTGATTGCTTTTTCAG+GGG | - | chr6_4:5909200-5909219 | Msa0973420:intron | 25.0% |
| ! | AAGATATTAGCTCATTTCAA+TGG | - | chr6_4:5909305-5909324 | Msa0973420:intron | 25.0% |
| ! | AGCTTATTGTTAGATTATGA+GGG | + | chr6_4:5909848-5909867 | None:intergenic | 25.0% |
| ! | AAGCTTATTGTTAGATTATG+AGG | + | chr6_4:5909849-5909868 | None:intergenic | 25.0% |
| !!! | TAAGCTTTTGTCTCATTTTT+TGG | - | chr6_4:5909862-5909881 | Msa0973420:intron | 25.0% |
| ! | AACTGAATAGAAATGAAGAA+AGG | - | chr6_4:5910316-5910335 | Msa0973420:five_prime_UTR | 25.0% |
| ! | GAGATTTATTTGTAAAGGAA+AGG | + | chr6_4:5910364-5910383 | None:intergenic | 25.0% |
| ! | AAGGAGAGATTTATTTGTAA+AGG | + | chr6_4:5910369-5910388 | None:intergenic | 25.0% |
| !! | AGACATTTGTTAAATGTGAA+AGG | + | chr6_4:5910388-5910407 | None:intergenic | 25.0% |
| AATAAGAGAGATTAGAGAGA+GGG | + | chr6_4:5905455-5905474 | None:intergenic | 30.0% | |
| AAATAAGAGAGATTAGAGAG+AGG | + | chr6_4:5905456-5905475 | None:intergenic | 30.0% | |
| GAGAAAAAACAGAGTAACAA+TGG | + | chr6_4:5905575-5905594 | None:intergenic | 30.0% | |
| ! | ATTATGTTGTGTTGTTATGC+AGG | - | chr6_4:5905911-5905930 | Msa0973420:intron | 30.0% |
| ! | TTATGTTGTGTTGTTATGCA+GGG | - | chr6_4:5905912-5905931 | Msa0973420:intron | 30.0% |
| TCGATAACGTGTTTATAAGT+CGG | - | chr6_4:5906243-5906262 | Msa0973420:intron | 30.0% | |
| !! | ACCTTATAAGCTGATTTTGT+AGG | - | chr6_4:5906277-5906296 | Msa0973420:intron | 30.0% |
| !! | CCTTATAAGCTGATTTTGTA+GGG | - | chr6_4:5906278-5906297 | Msa0973420:intron | 30.0% |
| GCATTTATTGTCTTACAATC+CGG | - | chr6_4:5906374-5906393 | Msa0973420:intron | 30.0% | |
| !! | CGGTTTTATAGGTTTGAATT+AGG | - | chr6_4:5906394-5906413 | Msa0973420:intron | 30.0% |
| TATAGGTTTGAATTAGGCTA+TGG | - | chr6_4:5906400-5906419 | Msa0973420:intron | 30.0% | |
| TTGAATTAGGCTATGGTATT+TGG | - | chr6_4:5906407-5906426 | Msa0973420:intron | 30.0% | |
| ATTCCTTCACAAATTTCCTA+TGG | - | chr6_4:5906532-5906551 | Msa0973420:intron | 30.0% | |
| AAAATCGGTGTGTAAAGTAA+GGG | + | chr6_4:5906655-5906674 | None:intergenic | 30.0% | |
| ATTCCTTCACAAATTTCCTA+TGG | - | chr6_4:5906532-5906551 | Msa0973420:intron | 30.0% | |
| ! | GTGAGATCAGTGTTATTAAA+TGG | + | chr6_4:5907230-5907249 | None:intergenic | 30.0% |
| CCCTCTTATAAACTAATTTC+CGG | + | chr6_4:5907257-5907276 | None:intergenic | 30.0% | |
| ! | CCGGAAATTAGTTTATAAGA+GGG | - | chr6_4:5907254-5907273 | Msa0973420:intron | 30.0% |
| ACAGAAGTGATTTATAAGGT+TGG | + | chr6_4:5907420-5907439 | None:intergenic | 30.0% | |
| ACCTTATAAATCACTTCTGT+AGG | - | chr6_4:5907420-5907439 | Msa0973420:intron | 30.0% | |
| CCTTATAAATCACTTCTGTA+GGG | - | chr6_4:5907421-5907440 | Msa0973420:intron | 30.0% | |
| ATATAACAAGAACCATGTGT+TGG | + | chr6_4:5907724-5907743 | None:intergenic | 30.0% | |
| ! | AACACATGGTTCTTGTTATA+TGG | - | chr6_4:5907723-5907742 | Msa0973420:intron | 30.0% |
| GTCTCGTTAAAGATTCAAAA+TGG | + | chr6_4:5907763-5907782 | None:intergenic | 30.0% | |
| AACATTATGAATCTGTGTTC+AGG | - | chr6_4:5907987-5908006 | Msa0973420:intron | 30.0% | |
| AACCATTAAGCATGAAGATA+TGG | + | chr6_4:5908031-5908050 | None:intergenic | 30.0% | |
| !!! | TTTTTTAAAGATGACGCCAA+TGG | + | chr6_4:5908219-5908238 | None:intergenic | 30.0% |
| !! | ACTTGATAATGATGAATGGT+TGG | + | chr6_4:5908252-5908271 | None:intergenic | 30.0% |
| AACCTTGATGCATTTAATTG+TGG | - | chr6_4:5908365-5908384 | Msa0973420:intron | 30.0% | |
| ATACCAACACTTCAAATTGA+AGG | - | chr6_4:5908474-5908493 | Msa0973420:intron | 30.0% | |
| CATATGTCAAACAACTGAAT+TGG | + | chr6_4:5908697-5908716 | None:intergenic | 30.0% | |
| !! | CTTTAGGATGAAATAGTTTC+TGG | - | chr6_4:5908775-5908794 | Msa0973420:intron | 30.0% |
| GTATTTGTCTAATGTTGAGA+AGG | - | chr6_4:5909047-5909066 | Msa0973420:intron | 30.0% | |
| TCAAATTACTCATCTAGTCA+TGG | + | chr6_4:5909188-5909207 | None:intergenic | 30.0% | |
| ! | ATTAAGTTGTTTGTCCAAAC+AGG | - | chr6_4:5909664-5909683 | Msa0973420:intron | 30.0% |
| ! | TTAAGTTGTTTGTCCAAACA+GGG | - | chr6_4:5909665-5909684 | Msa0973420:intron | 30.0% |
| ! | TCAGTAAGCTATTCTGTTTT+TGG | - | chr6_4:5909760-5909779 | Msa0973420:intron | 30.0% |
| !! | CAGTAAGCTATTCTGTTTTT+GGG | - | chr6_4:5909761-5909780 | Msa0973420:intron | 30.0% |
| !!! | AGTAAGCTATTCTGTTTTTG+GGG | - | chr6_4:5909762-5909781 | Msa0973420:intron | 30.0% |
| !!! | TTTGTCTCATTTTTTGGCTT+AGG | - | chr6_4:5909868-5909887 | Msa0973420:intron | 30.0% |
| TGAGAAAAATCCACGTTATA+TGG | - | chr6_4:5910161-5910180 | Msa0973420:CDS | 30.0% | |
| AAAAATCCACGTTATATGGT+TGG | - | chr6_4:5910165-5910184 | Msa0973420:CDS | 30.0% | |
| !!! | TTAGAGAGAGGGTTTTGTTT+AGG | + | chr6_4:5905444-5905463 | None:intergenic | 35.0% |
| AGTAACAATGGAAGAAAACG+AGG | + | chr6_4:5905563-5905582 | None:intergenic | 35.0% | |
| GTTTCTTCAATTCGATTACC+TGG | - | chr6_4:5905605-5905624 | Msa0973420:CDS | 35.0% | |
| TTCAATTCGATTACCTGGTT+TGG | - | chr6_4:5905610-5905629 | Msa0973420:CDS | 35.0% | |
| ! | TTGTTTTCTTCTTCCAAACC+AGG | + | chr6_4:5905626-5905645 | None:intergenic | 35.0% |
| !!! | CAATTTTTTGTTTTCAGGCG+TGG | - | chr6_4:5905740-5905759 | Msa0973420:CDS | 35.0% |
| ! | GTTGTTCAAAAGGGTTGTTT+TGG | - | chr6_4:5905852-5905871 | Msa0973420:intron | 35.0% |
| !!! | AAGGGTTGTTTTGGTTTTTG+AGG | - | chr6_4:5905861-5905880 | Msa0973420:intron | 35.0% |
| ATAACGTGTTTATAAGTCGG+AGG | - | chr6_4:5906246-5906265 | Msa0973420:intron | 35.0% | |
| CAAAATCAGCTTATAAGGTG+AGG | + | chr6_4:5906276-5906295 | None:intergenic | 35.0% | |
| CCCTACAAAATCAGCTTATA+AGG | + | chr6_4:5906281-5906300 | None:intergenic | 35.0% | |
| ! | TGATTTTGTAGGGTTCAGTT+AGG | - | chr6_4:5906288-5906307 | Msa0973420:intron | 35.0% |
| !! | GGTTCAGTTAGGATTTGTTA+TGG | - | chr6_4:5906299-5906318 | Msa0973420:intron | 35.0% |
| ! | AAACACATTTTCGGAACATC+AGG | + | chr6_4:5906343-5906362 | None:intergenic | 35.0% |
| !! | GTCTTACAATCCGGTTTTAT+AGG | - | chr6_4:5906383-5906402 | Msa0973420:intron | 35.0% |
| !!! | AATTTTTTGCCTACCAGCAT+TGG | + | chr6_4:5906465-5906484 | None:intergenic | 35.0% |
| CTGTTATTAAATGGCAGTCA+CGG | + | chr6_4:5906589-5906608 | None:intergenic | 35.0% | |
| ! | TGACTGCCATTTAATAACAG+TGG | - | chr6_4:5906589-5906608 | Msa0973420:intron | 35.0% |
| GTGAGACCACTGTTATTAAA+TGG | + | chr6_4:5906598-5906617 | None:intergenic | 35.0% | |
| CAAAATCGGTGTGTAAAGTA+AGG | + | chr6_4:5906656-5906675 | None:intergenic | 35.0% | |
| !!! | ACTTTACACACCGATTTTGT+AGG | - | chr6_4:5906657-5906676 | Msa0973420:intron | 35.0% |
| CAAGCTCAATCCTACAAAAT+CGG | + | chr6_4:5906670-5906689 | None:intergenic | 35.0% | |
| TCTGTATAAACAACCCATTG+CGG | - | chr6_4:5906820-5906839 | Msa0973420:CDS | 35.0% | |
| TTATTAAATGGCAGCCATAG+TGG | + | chr6_4:5906920-5906939 | None:intergenic | 35.0% | |
| ! | GTGAGACCAGTGTTATTAAA+TGG | + | chr6_4:5906932-5906951 | None:intergenic | 35.0% |
| !! | AAAACTGGCTTGTAAGGTAA+GGG | + | chr6_4:5906989-5907008 | None:intergenic | 35.0% |
| GAAAGTCTCAATGTTGTTGA+TGG | - | chr6_4:5907079-5907098 | Msa0973420:intron | 35.0% | |
| !! | ATGTTGTTGATGGTGGTATA+TGG | - | chr6_4:5907089-5907108 | Msa0973420:intron | 35.0% |
| TTATTAAATGGCAGCCATGA+CGG | + | chr6_4:5907218-5907237 | None:intergenic | 35.0% | |
| ! | GCCGGAAATTAGTTTATAAG+AGG | - | chr6_4:5907253-5907272 | Msa0973420:intron | 35.0% |
| CTAACTCAAACATGCAAAAC+TGG | + | chr6_4:5907297-5907316 | None:intergenic | 35.0% | |
| !! | CAGTTTTGCATGTTTGAGTT+AGG | - | chr6_4:5907295-5907314 | Msa0973420:intron | 35.0% |
| CCCTACAGAAGTGATTTATA+AGG | + | chr6_4:5907424-5907443 | None:intergenic | 35.0% | |
| ATTATAGTCGAAGGATAAGC+TGG | - | chr6_4:5907496-5907515 | Msa0973420:intron | 35.0% | |
| AAACAAATCACTCATCTCCA+TGG | + | chr6_4:5907846-5907865 | None:intergenic | 35.0% | |
| CTCCATATCTTCATGCTTAA+TGG | - | chr6_4:5908026-5908045 | Msa0973420:intron | 35.0% | |
| TCCTATCTAGATTCTTCCTT+TGG | - | chr6_4:5908080-5908099 | Msa0973420:intron | 35.0% | |
| TCCAAAGGAAGAATCTAGAT+AGG | + | chr6_4:5908084-5908103 | None:intergenic | 35.0% | |
| ! | CTACATTTTCACAACTCCAA+AGG | + | chr6_4:5908099-5908118 | None:intergenic | 35.0% |
| TTGGAGTTGTGAAAATGTAG+TGG | - | chr6_4:5908099-5908118 | Msa0973420:intron | 35.0% | |
| AAGATGATGAGGGAAAAAGT+AGG | + | chr6_4:5908149-5908168 | None:intergenic | 35.0% | |
| CCTCATAAACAAGATGATGA+GGG | + | chr6_4:5908159-5908178 | None:intergenic | 35.0% | |
| CACCACAATTAAATGCATCA+AGG | + | chr6_4:5908370-5908389 | None:intergenic | 35.0% | |
| AAAGGGTTATTGTGAAAGCT+GGG | + | chr6_4:5908437-5908456 | None:intergenic | 35.0% | |
| AATTTGTAGGTATGAAGCAC+CGG | + | chr6_4:5908607-5908626 | None:intergenic | 35.0% | |
| ! | CAAGTATTGCACTACATGAA+CGG | - | chr6_4:5908940-5908959 | Msa0973420:intron | 35.0% |
| TCGTGGAAGAAATCAAAATG+TGG | + | chr6_4:5908979-5908998 | None:intergenic | 35.0% | |
| !!! | TTTTGATTTCTTCCACGACA+AGG | - | chr6_4:5908981-5909000 | Msa0973420:intron | 35.0% |
| TACATGTGAAAGTCTTACCT+CGG | + | chr6_4:5909097-5909116 | None:intergenic | 35.0% | |
| ! | TTTCTTTTGTTAGCGAGTGT+AGG | + | chr6_4:5909155-5909174 | None:intergenic | 35.0% |
| CTGTGATTTCAGTAAAACCT+CGG | - | chr6_4:5909917-5909936 | Msa0973420:intron | 35.0% | |
| ATTTCAGTAAAACCTCGGAA+GGG | - | chr6_4:5909922-5909941 | Msa0973420:intron | 35.0% | |
| ATGAAGACTGAAGAACAACA+AGG | + | chr6_4:5909953-5909972 | None:intergenic | 35.0% | |
| ! | ATGCAAGCTTTTTGAATCTG+TGG | + | chr6_4:5909986-5910005 | None:intergenic | 35.0% |
| ACAGATTCAAAAAGCTTGCA+TGG | - | chr6_4:5909985-5910004 | Msa0973420:CDS | 35.0% | |
| ATGAGAATGAGAATTGTGCT+AGG | - | chr6_4:5910118-5910137 | Msa0973420:CDS | 35.0% | |
| AATGTTTGCTCTTCTTAGAG+AGG | - | chr6_4:5910225-5910244 | Msa0973420:five_prime_UTR | 35.0% | |
| TCTTCTTAGAGAGGTTATCA+TGG | - | chr6_4:5910234-5910253 | Msa0973420:five_prime_UTR | 35.0% | |
| ! | GATTCCCACAGATTTGAGTT+TGG | + | chr6_4:5905355-5905374 | None:intergenic | 40.0% |
| ACAATGGAAGAAAACGAGGT+TGG | + | chr6_4:5905559-5905578 | None:intergenic | 40.0% | |
| !!! | TTTTGTTTTCAGGCGTGGAT+CGG | - | chr6_4:5905745-5905764 | Msa0973420:CDS | 40.0% |
| CATGTTCCATATTGAGAGTC+TGG | - | chr6_4:5906202-5906221 | Msa0973420:intron | 40.0% | |
| ! | TTTTCGCCAGACTCTCAATA+TGG | + | chr6_4:5906211-5906230 | None:intergenic | 40.0% |
| TAGGCTATGGTATTTGGTCA+TGG | - | chr6_4:5906413-5906432 | Msa0973420:intron | 40.0% | |
| CTATGGTATTTGGTCATGGT+GGG | - | chr6_4:5906417-5906436 | Msa0973420:intron | 40.0% | |
| GTCCTATAAACAAGCCAATC+CGG | - | chr6_4:5906486-5906505 | Msa0973420:CDS | 40.0% | |
| TGAAGGAATGTCCACCATAA+GGG | + | chr6_4:5906521-5906540 | None:intergenic | 40.0% | |
| CCACCATAGGAAATTTGTGA+AGG | + | chr6_4:5906538-5906557 | None:intergenic | 40.0% | |
| CCTTCACAAATTTCCTATGG+TGG | - | chr6_4:5906535-5906554 | Msa0973420:intron | 40.0% | |
| TTATTAAATGGCAGTCACGG+TGG | + | chr6_4:5906586-5906605 | None:intergenic | 40.0% | |
| ! | CGATTTTGTAGGATTGAGCT+TGG | - | chr6_4:5906668-5906687 | Msa0973420:CDS | 40.0% |
| TCTTATCAGTTATCACACCC+AGG | + | chr6_4:5906741-5906760 | None:intergenic | 40.0% | |
| TTGTGAAGGAATGTCTACCA+TGG | + | chr6_4:5906858-5906877 | None:intergenic | 40.0% | |
| CCTTCACAAATTTCCTATGG+CGG | - | chr6_4:5906535-5906554 | Msa0973420:intron | 40.0% | |
| ! | TGGCTGCCATTTAATAACAC+TGG | - | chr6_4:5906923-5906942 | Msa0973420:intron | 40.0% |
| !! | CAAAACTGGCTTGTAAGGTA+AGG | + | chr6_4:5906990-5907009 | None:intergenic | 40.0% |
| !! | ACCTTACAAGCCAGTTTTGT+TGG | - | chr6_4:5906991-5907010 | Msa0973420:intron | 40.0% |
| !!! | CAGTTTTGTTGGCTTGAGTT+CGG | - | chr6_4:5907002-5907021 | Msa0973420:intron | 40.0% |
| ! | AGTCTCAATGTTGTTGATGG+TGG | - | chr6_4:5907082-5907101 | Msa0973420:intron | 40.0% |
| !! | TTGTTGATGGTGGTATATGG+CGG | - | chr6_4:5907092-5907111 | Msa0973420:intron | 40.0% |
| !! | TGTGTTATGAGGCGGATTTT+TGG | + | chr6_4:5907122-5907141 | None:intergenic | 40.0% |
| TAACACTGATCTCACATTGC+CGG | - | chr6_4:5907235-5907254 | Msa0973420:intron | 40.0% | |
| TCAAACATGCAAAACTGGCT+TGG | + | chr6_4:5907292-5907311 | None:intergenic | 40.0% | |
| ! | TGCTCGAGATTTTCAATCCT+TGG | - | chr6_4:5907343-5907362 | Msa0973420:intron | 40.0% |
| CACTTCTGTAGGGTTGAATT+AGG | - | chr6_4:5907431-5907450 | Msa0973420:intron | 40.0% | |
| AGTGAAGTCAGAACTAGTTC+TGG | - | chr6_4:5907563-5907582 | Msa0973420:intron | 40.0% | |
| ! | GTGAAGTCAGAACTAGTTCT+GGG | - | chr6_4:5907564-5907583 | Msa0973420:intron | 40.0% |
| GATGTTTCTCAACAAGCAAC+AGG | - | chr6_4:5907586-5907605 | Msa0973420:intron | 40.0% | |
| ! | CCCTCATCATCTTGTTTATG+AGG | - | chr6_4:5908156-5908175 | Msa0973420:CDS | 40.0% |
| GCCTCATAAACAAGATGATG+AGG | + | chr6_4:5908160-5908179 | None:intergenic | 40.0% | |
| !!! | CTTTATTTTCTCAGCGCCAT+TGG | - | chr6_4:5908200-5908219 | Msa0973420:CDS | 40.0% |
| GAAAGGGTTATTGTGAAAGC+TGG | + | chr6_4:5908438-5908457 | None:intergenic | 40.0% | |
| ! | ACGCCTTCAATTTGAAGTGT+TGG | + | chr6_4:5908480-5908499 | None:intergenic | 40.0% |
| ! | ACTTCAAATTGAAGGCGTGT+CGG | - | chr6_4:5908482-5908501 | Msa0973420:intron | 40.0% |
| ACAGACACAAACACTGAACA+AGG | + | chr6_4:5908583-5908602 | None:intergenic | 40.0% | |
| TGGTGTCTACTACTTACCTA+CGG | + | chr6_4:5908836-5908855 | None:intergenic | 40.0% | |
| TAGTAGACACCATCATGCTT+TGG | - | chr6_4:5908844-5908863 | Msa0973420:intron | 40.0% | |
| TAAAACGGACCAAAGCATGA+TGG | + | chr6_4:5908856-5908875 | None:intergenic | 40.0% | |
| ! | ATCATGCTTTGGTCCGTTTT+AGG | - | chr6_4:5908855-5908874 | Msa0973420:intron | 40.0% |
| AGCTCTTATCCATCAGAGAA+TGG | - | chr6_4:5908907-5908926 | Msa0973420:intron | 40.0% | |
| ATAGACTCACCATTCTCTGA+TGG | + | chr6_4:5908919-5908938 | None:intergenic | 40.0% | |
| TTGTCTAATGTTGAGAAGGG+TGG | - | chr6_4:5909051-5909070 | Msa0973420:intron | 40.0% | |
| !!! | TTTGATTGCTTTTTCAGGGG+AGG | - | chr6_4:5909203-5909222 | Msa0973420:intron | 40.0% |
| AGACTGTTTAGGAGAGCTTA+TGG | - | chr6_4:5909504-5909523 | Msa0973420:intron | 40.0% | |
| ATGAAAATGCACACCCTGTT+TGG | + | chr6_4:5909681-5909700 | None:intergenic | 40.0% | |
| !! | TTTTTGGGGACGAATGAGAT+TGG | - | chr6_4:5909776-5909795 | Msa0973420:intron | 40.0% |
| !! | TTTTGGGGACGAATGAGATT+GGG | - | chr6_4:5909777-5909796 | Msa0973420:intron | 40.0% |
| GATTTCAGTAAAACCTCGGA+AGG | - | chr6_4:5909921-5909940 | Msa0973420:intron | 40.0% | |
| !! | TCGTATCGGTTTCTCAAAGT+CGG | + | chr6_4:5910067-5910086 | None:intergenic | 40.0% |
| AGAATGAGAATTGTGCTAGG+TGG | - | chr6_4:5910121-5910140 | Msa0973420:CDS | 40.0% | |
| GAATGAGAATTGTGCTAGGT+GGG | - | chr6_4:5910122-5910141 | Msa0973420:CDS | 40.0% | |
| CCATTACCAACCATATAACG+TGG | + | chr6_4:5910174-5910193 | None:intergenic | 40.0% | |
| !! | CCACGTTATATGGTTGGTAA+TGG | - | chr6_4:5910171-5910190 | Msa0973420:CDS | 40.0% |
| !! | CGTTATATGGTTGGTAATGG+AGG | - | chr6_4:5910174-5910193 | Msa0973420:CDS | 40.0% |
| !! | GTTGGTAATGGAGGAGTTAA+AGG | - | chr6_4:5910183-5910202 | Msa0973420:CDS | 40.0% |
| AAGAAAGGAGTTCTCCTCTA+GGG | - | chr6_4:5910331-5910350 | Msa0973420:five_prime_UTR | 40.0% | |
| AGACGCCAAACTCAAATCTG+TGG | - | chr6_4:5905347-5905366 | Msa0973420:three_prime_UTR | 45.0% | |
| GACGCCAAACTCAAATCTGT+GGG | - | chr6_4:5905348-5905367 | Msa0973420:three_prime_UTR | 45.0% | |
| GCTATGGTATTTGGTCATGG+TGG | - | chr6_4:5906416-5906435 | Msa0973420:intron | 45.0% | |
| GTGAAGGAATGTCCACCATA+AGG | + | chr6_4:5906522-5906541 | None:intergenic | 45.0% | |
| GATCTTAAGACGACCACCAT+AGG | + | chr6_4:5906551-5906570 | None:intergenic | 45.0% | |
| CCGCCATAGGAAATTTGTGA+AGG | + | chr6_4:5906872-5906891 | None:intergenic | 45.0% | |
| !!! | GATTTTAAGACGACCGCCAT+AGG | + | chr6_4:5906885-5906904 | None:intergenic | 45.0% |
| !! | GCCAACAAAACTGGCTTGTA+AGG | + | chr6_4:5906995-5907014 | None:intergenic | 45.0% |
| CGAACTCAAGCCAACAAAAC+TGG | + | chr6_4:5907004-5907023 | None:intergenic | 45.0% | |
| TGCTCCTGATGTTCAGTTCT+GGG | - | chr6_4:5907050-5907069 | Msa0973420:intron | 45.0% | |
| GGTTGTCTTAAGATCCGTCA+TGG | - | chr6_4:5907201-5907220 | Msa0973420:intron | 45.0% | |
| !! | ATGCAAAACTGGCTTGGTGA+GGG | + | chr6_4:5907286-5907305 | None:intergenic | 45.0% |
| GTAAGACTCTCAACACACCA+AGG | + | chr6_4:5907363-5907382 | None:intergenic | 45.0% | |
| GGATAAGCTGGAGAAGTCTA+TGG | - | chr6_4:5907508-5907527 | Msa0973420:intron | 45.0% | |
| TAAGCTGGAGAAGTCTATGG+TGG | - | chr6_4:5907511-5907530 | Msa0973420:intron | 45.0% | |
| !! | ATGGTGGCGGATAATGAATC+TGG | - | chr6_4:5907527-5907546 | Msa0973420:intron | 45.0% |
| AACACTGAACAAGGACACGT+CGG | + | chr6_4:5908574-5908593 | None:intergenic | 45.0% | |
| TTCAGTGTTTGTGTCTGTGC+CGG | - | chr6_4:5908585-5908604 | Msa0973420:intron | 45.0% | |
| TCTACTACTTACCTACGGGA+AGG | + | chr6_4:5908831-5908850 | None:intergenic | 45.0% | |
| GGTGTCTACTACTTACCTAC+GGG | + | chr6_4:5908835-5908854 | None:intergenic | 45.0% | |
| GACAAGGCTAATCAACGACT+TGG | - | chr6_4:5908997-5909016 | Msa0973420:intron | 45.0% | |
| ! | AAGGCTAATCAACGACTTGG+CGG | - | chr6_4:5909000-5909019 | Msa0973420:intron | 45.0% |
| !! | AACCATTTTTCCTCATGCCG+AGG | - | chr6_4:5909077-5909096 | Msa0973420:intron | 45.0% |
| TACCTCGGCATGAGGAAAAA+TGG | + | chr6_4:5909082-5909101 | None:intergenic | 45.0% | |
| ! | TCTGACCAGCTCTCATCTTT+TGG | + | chr6_4:5909238-5909257 | None:intergenic | 45.0% |
| TGGTCAGAATGTGCTCACAA+AGG | - | chr6_4:5909250-5909269 | Msa0973420:intron | 45.0% | |
| TGTGCTCACAAAGGATATGC+AGG | - | chr6_4:5909259-5909278 | Msa0973420:intron | 45.0% | |
| CACTTCTCACCTTCAATCAC+TGG | + | chr6_4:5910018-5910037 | None:intergenic | 45.0% | |
| CAGTGATTGAAGGTGAGAAG+TGG | - | chr6_4:5910016-5910035 | Msa0973420:intron | 45.0% | |
| AGAAGTGGTCAGCAACAAAG+TGG | - | chr6_4:5910031-5910050 | Msa0973420:intron | 45.0% | |
| GAAACCGATACGACAAGCAT+TGG | - | chr6_4:5910074-5910093 | Msa0973420:intron | 45.0% | |
| TCCTCCAATGCTTGTCGTAT+CGG | + | chr6_4:5910081-5910100 | None:intergenic | 45.0% | |
| GAAGAAAGGAGTTCTCCTCT+AGG | - | chr6_4:5910330-5910349 | Msa0973420:five_prime_UTR | 45.0% | |
| GGAAAGGGTAAAAACCCTAG+AGG | + | chr6_4:5910348-5910367 | None:intergenic | 45.0% | |
| !!! | TTACTATAATTTTTTATATT+GGG | + | chr6_4:5907934-5907953 | None:intergenic | 5.0% |
| !!! | TTTACTATAATTTTTTATAT+TGG | + | chr6_4:5907935-5907954 | None:intergenic | 5.0% |
| !! | TTCAGGCGTGGATCGGTTTT+TGG | - | chr6_4:5905752-5905771 | Msa0973420:CDS | 50.0% |
| GAGAGCTGAGTAACACGTGT+CGG | + | chr6_4:5905797-5905816 | None:intergenic | 50.0% | |
| ! | CATCAGGAGCACAACATGAG+CGG | + | chr6_4:5906327-5906346 | None:intergenic | 50.0% |
| TCACACAGTGTTGCCAATGC+TGG | - | chr6_4:5906449-5906468 | Msa0973420:intron | 50.0% | |
| ACAGTGTTGCCAATGCTGGT+AGG | - | chr6_4:5906453-5906472 | Msa0973420:intron | 50.0% | |
| !! | GGCCGGATTGGCTTGTTTAT+AGG | + | chr6_4:5906491-5906510 | None:intergenic | 50.0% |
| AAACAAGCCAATCCGGCCTA+TGG | - | chr6_4:5906493-5906512 | Msa0973420:CDS | 50.0% | |
| AAATGGCAGTCACGGTGGAA+TGG | + | chr6_4:5906581-5906600 | None:intergenic | 50.0% | |
| ! | TCAGGACAGGAGTGCAACAA+GGG | + | chr6_4:5906710-5906729 | None:intergenic | 50.0% |
| ! | ATCAGGACAGGAGTGCAACA+AGG | + | chr6_4:5906711-5906730 | None:intergenic | 50.0% |
| CTGTCCTGATGTTCAGTCCT+GGG | - | chr6_4:5906721-5906740 | Msa0973420:CDS | 50.0% | |
| GAGAGAGTCTCACAGTGTTG+TGG | - | chr6_4:5906767-5906786 | Msa0973420:CDS | 50.0% | |
| AGAGTCTCACAGTGTTGTGG+AGG | - | chr6_4:5906770-5906789 | Msa0973420:CDS | 50.0% | |
| GAGTCTCACAGTGTTGTGGA+GGG | - | chr6_4:5906771-5906790 | Msa0973420:CDS | 50.0% | |
| GTGTTGTGGAGGGTGGAATA+TGG | - | chr6_4:5906781-5906800 | Msa0973420:CDS | 50.0% | |
| TGGAGGGTGGAATATGGTGA+AGG | - | chr6_4:5906787-5906806 | Msa0973420:CDS | 50.0% | |
| GTCTACCATGGCAGTGACAT+AGG | + | chr6_4:5906846-5906865 | None:intergenic | 50.0% | |
| ! | ACATCAGGAGCACGACATGA+GGG | + | chr6_4:5907042-5907061 | None:intergenic | 50.0% |
| ! | AACATCAGGAGCACGACATG+AGG | + | chr6_4:5907043-5907062 | None:intergenic | 50.0% |
| GTGCTCCTGATGTTCAGTTC+TGG | - | chr6_4:5907049-5907068 | Msa0973420:intron | 50.0% | |
| CACACCCAGAACTGAACATC+AGG | + | chr6_4:5907057-5907076 | None:intergenic | 50.0% | |
| !! | TGATGGTGGTATATGGCGGA+AGG | - | chr6_4:5907096-5907115 | Msa0973420:intron | 50.0% |
| !! | CATGCAAAACTGGCTTGGTG+AGG | + | chr6_4:5907287-5907306 | None:intergenic | 50.0% |
| GGGTTATTGTGAAAGCTGGG+AGG | + | chr6_4:5908434-5908453 | None:intergenic | 50.0% | |
| TTGAAGCACGAATTGCCGCA+TGG | - | chr6_4:5908800-5908819 | Msa0973420:intron | 50.0% | |
| TACGGGAAGGAATGTCCATG+CGG | + | chr6_4:5908818-5908837 | None:intergenic | 50.0% | |
| !! | GTCGTTGATTAGCCTTGTCG+TGG | + | chr6_4:5908996-5909015 | None:intergenic | 50.0% |
| GAAAGTCTTACCTCGGCATG+AGG | + | chr6_4:5909090-5909109 | None:intergenic | 50.0% | |
| !! | GTGTAGGAGTGTTCGTCATG+TGG | + | chr6_4:5909139-5909158 | None:intergenic | 50.0% |
| ATCTCTTGCTTCCACCTGCA+CGG | - | chr6_4:5909380-5909399 | Msa0973420:intron | 50.0% | |
| TAATCAAAACAGGCCCGTGC+AGG | + | chr6_4:5909397-5909416 | None:intergenic | 50.0% | |
| GGAAGCTGTCCAGTGATTGA+AGG | - | chr6_4:5910006-5910025 | Msa0973420:intron | 50.0% | |
| !! | ACCGATACGACAAGCATTGG+AGG | - | chr6_4:5910077-5910096 | Msa0973420:intron | 50.0% |
| !! | CGACAAGCATTGGAGGATGA+TGG | - | chr6_4:5910084-5910103 | Msa0973420:intron | 50.0% |
| !! | TGTGCTAGGTGGGCTAAAGT+TGG | - | chr6_4:5910132-5910151 | Msa0973420:CDS | 50.0% |
| ! | CACGTGTTACTCAGCTCTCG+TGG | - | chr6_4:5905798-5905817 | Msa0973420:CDS | 55.0% |
| CCAGGACTGAACATCAGGAC+AGG | + | chr6_4:5906723-5906742 | None:intergenic | 55.0% | |
| CCTGTCCTGATGTTCAGTCC+TGG | - | chr6_4:5906720-5906739 | Msa0973420:CDS | 55.0% | |
| CACACCCAGGACTGAACATC+AGG | + | chr6_4:5906728-5906747 | None:intergenic | 55.0% | |
| TCTCACAGTGTTGTGGAGGG+TGG | - | chr6_4:5906774-5906793 | Msa0973420:CDS | 55.0% | |
| GCAGTGACATAGGCCGCAAT+GGG | + | chr6_4:5906836-5906855 | None:intergenic | 55.0% | |
| ! | CATCAGGAGCACGACATGAG+GGG | + | chr6_4:5907041-5907060 | None:intergenic | 55.0% |
| CAGTGGCGTGTGTTATGAGG+CGG | + | chr6_4:5907130-5907149 | None:intergenic | 55.0% | |
| CTGCAGTGGCGTGTGTTATG+AGG | + | chr6_4:5907133-5907152 | None:intergenic | 55.0% | |
| GCTGGAGAAGTCTATGGTGG+CGG | - | chr6_4:5907514-5907533 | Msa0973420:intron | 55.0% | |
| TCACACGCGTCAGTGTCATG+CGG | + | chr6_4:5908511-5908530 | None:intergenic | 55.0% | |
| GCATGGACATTCCTTCCCGT+AGG | - | chr6_4:5908817-5908836 | Msa0973420:intron | 55.0% | |
| TCAGCACCGTTGCAACACGA+TGG | + | chr6_4:5909026-5909045 | None:intergenic | 55.0% | |
| CGCAGCCAAAAGATGAGAGC+TGG | - | chr6_4:5909230-5909249 | Msa0973420:intron | 55.0% | |
| TCTCTTGCTTCCACCTGCAC+GGG | - | chr6_4:5909381-5909400 | Msa0973420:intron | 55.0% | |
| CTCAGCTCTCGTGGAGTCCT+AGG | - | chr6_4:5905807-5905826 | Msa0973420:CDS | 60.0% | |
| !! | ACCATAAGGGCGCCATAGGC+CGG | + | chr6_4:5906508-5906527 | None:intergenic | 60.0% |
| !! | GTCCACCATAAGGGCGCCAT+AGG | + | chr6_4:5906512-5906531 | None:intergenic | 60.0% |
| ! | GGACAGGAGTGCAACAAGGG+TGG | + | chr6_4:5906707-5906726 | None:intergenic | 60.0% |
| GGCAGTGACATAGGCCGCAA+TGG | + | chr6_4:5906837-5906856 | None:intergenic | 60.0% | |
| TGCGGCCTATGTCACTGCCA+TGG | - | chr6_4:5906838-5906857 | Msa0973420:intron | 60.0% | |
| TCCGCCACGCTGTTCCACTA+TGG | - | chr6_4:5906903-5906922 | Msa0973420:intron | 60.0% | |
| ! | GCCATAGTGGAACAGCGTGG+CGG | + | chr6_4:5906907-5906926 | None:intergenic | 60.0% |
| ! | GCAGCCATAGTGGAACAGCG+TGG | + | chr6_4:5906910-5906929 | None:intergenic | 60.0% |
| TCCGCCATGACAGCGCCATA+GGG | + | chr6_4:5907156-5907175 | None:intergenic | 60.0% | |
| GAACAAGGACACGTCGGCAC+TGG | + | chr6_4:5908568-5908587 | None:intergenic | 60.0% | |
| TGGCGGCCATCGTGTTGCAA+CGG | - | chr6_4:5909017-5909036 | Msa0973420:intron | 60.0% | |
| TCAAAACAGGCCCGTGCAGG+TGG | + | chr6_4:5909394-5909413 | None:intergenic | 60.0% | |
| ! | AACAAGGCGTCACCCTTCCG+AGG | + | chr6_4:5909937-5909956 | None:intergenic | 60.0% |
| !! | AAGGGCGCCATAGGCCGGAT+TGG | + | chr6_4:5906503-5906522 | None:intergenic | 65.0% |
| TCCGGCCTATGGCGCCCTTA+TGG | - | chr6_4:5906504-5906523 | Msa0973420:CDS | 65.0% | |
| GGCCTATGGCGCCCTTATGG+TGG | - | chr6_4:5906507-5906526 | Msa0973420:CDS | 65.0% | |
| GCAGTCACGGTGGAATGGCG+TGG | + | chr6_4:5906576-5906595 | None:intergenic | 65.0% | |
| GCACGACATGAGGGGCTCGA+TGG | + | chr6_4:5907033-5907052 | None:intergenic | 65.0% | |
| CACACGCCACTGCAGCCCTA+TGG | - | chr6_4:5907138-5907157 | Msa0973420:intron | 65.0% | |
| ACAGCGCCATAGGGCTGCAG+TGG | + | chr6_4:5907147-5907166 | None:intergenic | 65.0% | |
| GCAGCCCTATGGCGCTGTCA+TGG | - | chr6_4:5907149-5907168 | Msa0973420:intron | 65.0% | |
| GCCCTATGGCGCTGTCATGG+CGG | - | chr6_4:5907152-5907171 | Msa0973420:intron | 65.0% | |
| GTCCGCCATGACAGCGCCAT+AGG | + | chr6_4:5907157-5907176 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 5905332 | 5910431 | 5905332 | ID=Msa0973420;Name=Msa0973420 |
| chr6_4 | mRNA | 5905332 | 5910431 | 5905332 | ID=Msa0973420-mRNA-1;Parent=Msa0973420;Name=Msa0973420-mRNA-1;_AED=0.07;_eAED=0.07;_QI=219|1|1|1|0.71|0.87|8|189|314 |
| chr6_4 | exon | 5905332 | 5905834 | 5905332 | ID=Msa0973420-mRNA-1:exon:2498;Parent=Msa0973420-mRNA-1 |
| chr6_4 | exon | 5906483 | 5906543 | 5906483 | ID=Msa0973420-mRNA-1:exon:2497;Parent=Msa0973420-mRNA-1 |
| chr6_4 | exon | 5906665 | 5906840 | 5906665 | ID=Msa0973420-mRNA-1:exon:2496;Parent=Msa0973420-mRNA-1 |
| chr6_4 | exon | 5906925 | 5906982 | 5906925 | ID=Msa0973420-mRNA-1:exon:2495;Parent=Msa0973420-mRNA-1 |
| chr6_4 | exon | 5908156 | 5908260 | 5908156 | ID=Msa0973420-mRNA-1:exon:2494;Parent=Msa0973420-mRNA-1 |
| chr6_4 | exon | 5909673 | 5909730 | 5909673 | ID=Msa0973420-mRNA-1:exon:2493;Parent=Msa0973420-mRNA-1 |
| chr6_4 | exon | 5909935 | 5910006 | 5909935 | ID=Msa0973420-mRNA-1:exon:2492;Parent=Msa0973420-mRNA-1 |
| chr6_4 | exon | 5910112 | 5910431 | 5910112 | ID=Msa0973420-mRNA-1:exon:2491;Parent=Msa0973420-mRNA-1 |
| chr6_4 | five_prime_UTR | 5910213 | 5910431 | 5910213 | ID=Msa0973420-mRNA-1:five_prime_utr;Parent=Msa0973420-mRNA-1 |
| chr6_4 | CDS | 5910112 | 5910212 | 5910112 | ID=Msa0973420-mRNA-1:cds;Parent=Msa0973420-mRNA-1 |
| chr6_4 | CDS | 5909935 | 5910006 | 5909935 | ID=Msa0973420-mRNA-1:cds;Parent=Msa0973420-mRNA-1 |
| chr6_4 | CDS | 5909673 | 5909730 | 5909673 | ID=Msa0973420-mRNA-1:cds;Parent=Msa0973420-mRNA-1 |
| chr6_4 | CDS | 5908156 | 5908260 | 5908156 | ID=Msa0973420-mRNA-1:cds;Parent=Msa0973420-mRNA-1 |
| chr6_4 | CDS | 5906925 | 5906982 | 5906925 | ID=Msa0973420-mRNA-1:cds;Parent=Msa0973420-mRNA-1 |
| chr6_4 | CDS | 5906665 | 5906840 | 5906665 | ID=Msa0973420-mRNA-1:cds;Parent=Msa0973420-mRNA-1 |
| chr6_4 | CDS | 5906483 | 5906543 | 5906483 | ID=Msa0973420-mRNA-1:cds;Parent=Msa0973420-mRNA-1 |
| chr6_4 | CDS | 5905521 | 5905834 | 5905521 | ID=Msa0973420-mRNA-1:cds;Parent=Msa0973420-mRNA-1 |
| chr6_4 | three_prime_UTR | 5905332 | 5905520 | 5905332 | ID=Msa0973420-mRNA-1:three_prime_utr;Parent=Msa0973420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
