Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870750 | XP_003618430.1 | 83.175 | 315 | 15 | 4 | 1 | 279 | 1 | 313 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870750 | sp|Q8L970|P4H7_ARATH | 56.825 | 315 | 91 | 4 | 6 | 279 | 6 | 316 | 3.39e-124 | 359 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870750 | B7FKS2 | 83.175 | 315 | 15 | 4 | 1 | 279 | 1 | 313 | 0.0 | 513 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008200 | Msa0870750 | 0.807029 | 6.169507e-50 | -8.615850e-47 |
| Msa0010490 | Msa0870750 | 0.804747 | 1.862270e-49 | -8.615850e-47 |
| Msa0010500 | Msa0870750 | 0.807015 | 6.212428e-50 | -8.615850e-47 |
| Msa0068020 | Msa0870750 | 0.809659 | 1.696144e-50 | -8.615850e-47 |
| Msa0090520 | Msa0870750 | 0.801641 | 8.180462e-49 | -8.615850e-47 |
| Msa0610550 | Msa0870750 | 0.810136 | 1.338862e-50 | -8.615850e-47 |
| Msa0672100 | Msa0870750 | 0.818116 | 2.318624e-52 | -8.615850e-47 |
| Msa0689440 | Msa0870750 | 0.816601 | 5.083418e-52 | -8.615850e-47 |
| Msa0693210 | Msa0870750 | 0.828076 | 1.098981e-54 | -8.615850e-47 |
| Msa0780930 | Msa0870750 | 0.807793 | 4.249963e-50 | -8.615850e-47 |
| Msa0149440 | Msa0870750 | 0.800116 | 1.675757e-48 | -8.615850e-47 |
| Msa0186540 | Msa0870750 | 0.808387 | 3.175475e-50 | -8.615850e-47 |
| Msa0190590 | Msa0870750 | 0.808727 | 2.687435e-50 | -8.615850e-47 |
| Msa0377820 | Msa0870750 | 0.817179 | 3.770477e-52 | -8.615850e-47 |
| Msa0385500 | Msa0870750 | 0.835770 | 1.383181e-56 | -8.615850e-47 |
| Msa0389510 | Msa0870750 | 0.806909 | 6.541736e-50 | -8.615850e-47 |
| Msa0460740 | Msa0870750 | 0.802471 | 5.523445e-49 | -8.615850e-47 |
| Msa0462600 | Msa0870750 | 0.803635 | 3.173734e-49 | -8.615850e-47 |
| Msa0472930 | Msa0870750 | 0.811165 | 8.024806e-51 | -8.615850e-47 |
| Msa0257490 | Msa0870750 | 0.821257 | 4.445394e-53 | -8.615850e-47 |
| Msa0280370 | Msa0870750 | 0.818997 | 1.463201e-52 | -8.615850e-47 |
| Msa0281530 | Msa0870750 | 0.808671 | 2.761721e-50 | -8.615850e-47 |
| Msa0296250 | Msa0870750 | 0.800549 | 1.368149e-48 | -8.615850e-47 |
| Msa0296790 | Msa0870750 | 0.813915 | 2.010011e-51 | -8.615850e-47 |
| Msa0319640 | Msa0870750 | 0.811046 | 8.515945e-51 | -8.615850e-47 |
| Msa0320590 | Msa0870750 | 0.806311 | 8.749323e-50 | -8.615850e-47 |
| Msa0523810 | Msa0870750 | 0.801049 | 1.081600e-48 | -8.615850e-47 |
| Msa0580230 | Msa0870750 | 0.802672 | 5.019448e-49 | -8.615850e-47 |
| Msa0870750 | Msa0903870 | 0.923947 | 1.355235e-89 | -8.615850e-47 |
| Msa0870750 | Msa0936480 | 0.921191 | 4.905780e-88 | -8.615850e-47 |
| Msa0870750 | Msa0944200 | 0.804380 | 2.220979e-49 | -8.615850e-47 |
| Msa0870750 | Msa0973420 | 0.946201 | 7.249912e-105 | -8.615850e-47 |
| Msa0870750 | Msa1027070 | 0.807779 | 4.278877e-50 | -8.615850e-47 |
| Msa0870750 | Msa1065240 | 0.816186 | 6.297441e-52 | -8.615850e-47 |
| Msa0870750 | Msa1071050 | 0.804035 | 2.620154e-49 | -8.615850e-47 |
| Msa0870750 | Msa1175350 | 0.831347 | 1.757568e-55 | -8.615850e-47 |
| Msa0870750 | Msa1277260 | 0.801946 | 7.081993e-49 | -8.615850e-47 |
| Msa0870750 | Msa1307180 | 0.816058 | 6.723311e-52 | -8.615850e-47 |
| Msa0870750 | Msa1315890 | 0.842899 | 1.950847e-58 | -8.615850e-47 |
| Msa0870750 | Msa1316360 | 0.809122 | 2.211656e-50 | -8.615850e-47 |
| Msa0870750 | Msa1351540 | 0.808556 | 2.922394e-50 | -8.615850e-47 |
| Msa0870750 | Msa1352890 | 0.803150 | 3.999749e-49 | -8.615850e-47 |
| Msa0870750 | Msa1374830 | 0.802633 | 5.113412e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870750 | MtrunA17_Chr6g0452281 | 83.175 | 315 | 15 | 4 | 1 | 279 | 1 | 313 | 0.0 | 513 |
| Msa0870750 | MtrunA17_Chr2g0286811 | 53.901 | 282 | 86 | 3 | 36 | 277 | 26 | 303 | 6.80e-103 | 302 |
| Msa0870750 | MtrunA17_Chr4g0066531 | 52.768 | 271 | 86 | 3 | 45 | 277 | 32 | 298 | 9.24e-97 | 286 |
| Msa0870750 | MtrunA17_Chr3g0143381 | 44.615 | 260 | 100 | 4 | 9 | 224 | 20 | 279 | 3.67e-69 | 215 |
| Msa0870750 | MtrunA17_Chr5g0406051 | 48.341 | 211 | 73 | 2 | 50 | 224 | 78 | 288 | 3.85e-66 | 207 |
| Msa0870750 | MtrunA17_Chr6g0470551 | 38.926 | 298 | 146 | 6 | 9 | 277 | 7 | 297 | 5.74e-66 | 207 |
| Msa0870750 | MtrunA17_Chr8g0371281 | 45.798 | 238 | 89 | 4 | 23 | 223 | 41 | 275 | 5.14e-65 | 204 |
| Msa0870750 | MtrunA17_Chr8g0371221 | 45.607 | 239 | 91 | 4 | 23 | 224 | 41 | 277 | 4.17e-64 | 202 |
| Msa0870750 | MtrunA17_Chr8g0371251 | 43.277 | 238 | 99 | 2 | 23 | 224 | 41 | 278 | 7.47e-63 | 199 |
| Msa0870750 | MtrunA17_Chr8g0371231 | 53.103 | 145 | 67 | 1 | 78 | 221 | 55 | 199 | 2.64e-51 | 167 |
| Msa0870750 | MtrunA17_Chr3g0143361 | 54.545 | 143 | 60 | 1 | 78 | 220 | 32 | 169 | 2.70e-49 | 162 |
| Msa0870750 | MtrunA17_Chr8g0371241 | 51.034 | 145 | 54 | 2 | 78 | 221 | 31 | 159 | 1.46e-43 | 146 |
| Msa0870750 | MtrunA17_Chr1g0213811 | 40.865 | 208 | 71 | 4 | 53 | 218 | 78 | 275 | 2.74e-43 | 149 |
| Msa0870750 | MtrunA17_Chr4g0053801 | 35.470 | 234 | 108 | 4 | 29 | 224 | 66 | 294 | 7.16e-40 | 140 |
| Msa0870750 | MtrunA17_Chr3g0143371 | 50.794 | 126 | 56 | 2 | 78 | 202 | 32 | 152 | 4.08e-35 | 124 |
| Msa0870750 | MtrunA17_Chr3g0143351 | 46.667 | 150 | 68 | 3 | 78 | 224 | 32 | 172 | 8.44e-35 | 124 |
| Msa0870750 | MtrunA17_Chr5g0401481 | 32.727 | 220 | 91 | 4 | 53 | 218 | 86 | 302 | 4.01e-31 | 117 |
| Msa0870750 | MtrunA17_Chr3g0098671 | 55.738 | 61 | 22 | 2 | 97 | 155 | 31 | 88 | 2.76e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870750 | AT3G28480.1 | 56.825 | 315 | 91 | 4 | 6 | 279 | 6 | 316 | 3.45e-125 | 359 |
| Msa0870750 | AT3G28480.2 | 55.418 | 323 | 91 | 4 | 6 | 279 | 6 | 324 | 1.07e-123 | 356 |
| Msa0870750 | AT3G28490.1 | 58.582 | 268 | 68 | 2 | 46 | 277 | 28 | 288 | 6.84e-112 | 325 |
| Msa0870750 | AT5G18900.1 | 52.015 | 273 | 89 | 3 | 43 | 277 | 30 | 298 | 5.79e-95 | 282 |
| Msa0870750 | AT3G06300.1 | 53.731 | 268 | 80 | 4 | 49 | 277 | 37 | 299 | 9.74e-94 | 279 |
| Msa0870750 | AT4G25600.1 | 45.946 | 259 | 106 | 7 | 38 | 277 | 48 | 291 | 5.88e-72 | 223 |
| Msa0870750 | AT1G20270.1 | 49.038 | 208 | 70 | 2 | 53 | 224 | 79 | 286 | 1.76e-64 | 204 |
| Msa0870750 | AT2G17720.1 | 47.867 | 211 | 74 | 2 | 50 | 224 | 80 | 290 | 1.17e-63 | 202 |
| Msa0870750 | AT4G35810.1 | 49.275 | 207 | 69 | 2 | 53 | 223 | 83 | 289 | 1.66e-63 | 201 |
| Msa0870750 | AT4G35810.2 | 49.275 | 207 | 69 | 2 | 53 | 223 | 83 | 289 | 1.66e-63 | 201 |
| Msa0870750 | AT4G25600.3 | 44.351 | 239 | 100 | 6 | 58 | 277 | 6 | 230 | 3.47e-63 | 199 |
| Msa0870750 | AT4G25600.4 | 44.351 | 239 | 100 | 6 | 58 | 277 | 3 | 227 | 4.02e-63 | 198 |
| Msa0870750 | AT4G25600.2 | 44.351 | 239 | 100 | 6 | 58 | 277 | 15 | 239 | 4.30e-63 | 199 |
| Msa0870750 | AT5G66060.1 | 48.341 | 211 | 73 | 2 | 50 | 224 | 78 | 288 | 1.16e-61 | 197 |
| Msa0870750 | AT2G43080.1 | 39.216 | 204 | 82 | 2 | 53 | 219 | 80 | 278 | 6.05e-42 | 145 |
| Msa0870750 | AT2G23096.1 | 38.806 | 201 | 85 | 4 | 53 | 218 | 71 | 268 | 4.61e-40 | 140 |
| Msa0870750 | AT4G33910.1 | 35.294 | 238 | 111 | 4 | 26 | 225 | 56 | 288 | 2.18e-39 | 139 |
| Msa0870750 | AT4G35820.1 | 39.614 | 207 | 60 | 5 | 40 | 202 | 77 | 262 | 1.35e-37 | 134 |
| Msa0870750 | AT5G66060.2 | 44.444 | 162 | 52 | 3 | 50 | 175 | 78 | 237 | 1.09e-35 | 128 |
| Msa0870750 | AT1G20270.2 | 43.089 | 123 | 35 | 1 | 53 | 140 | 79 | 201 | 6.90e-28 | 107 |
| Msa0870750 | AT1G20270.3 | 43.089 | 123 | 35 | 1 | 53 | 140 | 79 | 201 | 6.90e-28 | 107 |
Find 64 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGTTAATTAAATGTTAAT+TGG | 0.206561 | 6_1:+5353343 | None:intergenic |
| CTTTAGGATGAAATAGTTTC+TGG | 0.221539 | 6_1:-5350068 | Msa0870750:intron |
| TCTGACCAGCTCTCATCTTT+TGG | 0.243925 | 6_1:+5349608 | None:intergenic |
| GTTGGTAATGGAGGAGTTAA+AGG | 0.311233 | 6_1:-5348675 | Msa0870750:CDS |
| TTCAATTCGATTACCTGGTT+TGG | 0.335287 | 6_1:-5353133 | Msa0870750:CDS |
| ATGTGATCATCTTATTGAAT+TGG | 0.366986 | 6_1:-5352772 | Msa0870750:intron |
| GATTCCCACAGATTTGAGTT+TGG | 0.395465 | 6_1:+5353391 | None:intergenic |
| GAGATTTATTTGTAAAGGAA+AGG | 0.436384 | 6_1:+5348497 | None:intergenic |
| AATAAGAGAGATTAGAGAGA+GGG | 0.438010 | 6_1:+5353291 | None:intergenic |
| TCCTCCAATGCTTGTCGTAT+CGG | 0.438442 | 6_1:+5348780 | None:intergenic |
| AAGGAGAGATTTATTTGTAA+AGG | 0.449994 | 6_1:+5348492 | None:intergenic |
| CCACGTTATATGGTTGGTAA+TGG | 0.471479 | 6_1:-5348687 | Msa0870750:CDS |
| AGACATTTGTTAAATGTGAA+AGG | 0.472931 | 6_1:+5348473 | None:intergenic |
| GTTTCTTCAATTCGATTACC+TGG | 0.479234 | 6_1:-5353138 | Msa0870750:CDS |
| CACTTCTCACCTTCAATCAC+TGG | 0.491510 | 6_1:+5348843 | None:intergenic |
| AGATTTATTTGTAAAGGAAA+GGG | 0.496125 | 6_1:+5348498 | None:intergenic |
| TCTTCTTAGAGAGGTTATCA+TGG | 0.503180 | 6_1:-5348624 | Msa0870750:exon |
| CTCAGCTCTCGTGGAGTCCT+AGG | 0.504470 | 6_1:-5352936 | Msa0870750:intron |
| CGACAAGCATTGGAGGATGA+TGG | 0.516551 | 6_1:-5348774 | Msa0870750:CDS |
| TGTGCTCACAAAGGATATGC+AGG | 0.524271 | 6_1:-5349584 | Msa0870750:intron |
| CGCAGCCAAAAGATGAGAGC+TGG | 0.532075 | 6_1:-5349613 | Msa0870750:CDS |
| TTGTCTAATGTTGAGAAGGG+TGG | 0.535297 | 6_1:-5349792 | Msa0870750:CDS |
| AAGAAAGGAGTTCTCCTCTA+GGG | 0.542203 | 6_1:-5348527 | Msa0870750:three_prime_UTR |
| AACTGAATAGAAATGAAGAA+AGG | 0.546047 | 6_1:-5348542 | Msa0870750:three_prime_UTR |
| GAAGAAAGGAGTTCTCCTCT+AGG | 0.547386 | 6_1:-5348528 | Msa0870750:three_prime_UTR |
| AAATAAGAGAGATTAGAGAG+AGG | 0.547974 | 6_1:+5353290 | None:intergenic |
| ACCGATACGACAAGCATTGG+AGG | 0.549713 | 6_1:-5348781 | Msa0870750:CDS |
| TGTGCTAGGTGGGCTAAAGT+TGG | 0.553043 | 6_1:-5348726 | Msa0870750:CDS |
| ACAATGGAAGAAAACGAGGT+TGG | 0.559292 | 6_1:+5353187 | None:intergenic |
| GAAACCGATACGACAAGCAT+TGG | 0.562936 | 6_1:-5348784 | Msa0870750:CDS |
| GTCGTTGATTAGCCTTGTCG+TGG | 0.563771 | 6_1:+5349850 | None:intergenic |
| TCGTATCGGTTTCTCAAAGT+CGG | 0.564192 | 6_1:+5348794 | None:intergenic |
| GGAAGCTGTCCAGTGATTGA+AGG | 0.566220 | 6_1:-5348852 | Msa0870750:CDS |
| AATGTTTGCTCTTCTTAGAG+AGG | 0.567861 | 6_1:-5348633 | Msa0870750:exon |
| CGTTATATGGTTGGTAATGG+AGG | 0.570195 | 6_1:-5348684 | Msa0870750:CDS |
| GATTTCAGTAAAACCTCGGA+AGG | 0.570685 | 6_1:-5348937 | Msa0870750:intron |
| CACGTGTTACTCAGCTCTCG+TGG | 0.573617 | 6_1:-5352945 | Msa0870750:CDS |
| AAGGCTAATCAACGACTTGG+CGG | 0.579353 | 6_1:-5349843 | Msa0870750:CDS |
| CTGTGATTTCAGTAAAACCT+CGG | 0.587062 | 6_1:-5348941 | Msa0870750:intron |
| GACAAGGCTAATCAACGACT+TGG | 0.590163 | 6_1:-5349846 | Msa0870750:CDS |
| CAAGTATTGCACTACATGAA+CGG | 0.597351 | 6_1:-5349903 | Msa0870750:CDS |
| TGGCGGCCATCGTGTTGCAA+CGG | 0.600471 | 6_1:-5349826 | Msa0870750:CDS |
| GTATTTGTCTAATGTTGAGA+AGG | 0.600995 | 6_1:-5349796 | Msa0870750:CDS |
| AACAAGGCGTCACCCTTCCG+AGG | 0.602551 | 6_1:+5348924 | None:intergenic |
| AGACGCCAAACTCAAATCTG+TGG | 0.603988 | 6_1:-5353396 | Msa0870750:five_prime_UTR |
| GACGCCAAACTCAAATCTGT+GGG | 0.606114 | 6_1:-5353395 | Msa0870750:five_prime_UTR |
| TATTTGTCTAATGTTGAGAA+GGG | 0.614235 | 6_1:-5349795 | Msa0870750:CDS |
| GAATGAGAATTGTGCTAGGT+GGG | 0.627537 | 6_1:-5348736 | Msa0870750:CDS |
| ATGAGAATGAGAATTGTGCT+AGG | 0.631627 | 6_1:-5348740 | Msa0870750:CDS |
| AGAAGTGGTCAGCAACAAAG+TGG | 0.631807 | 6_1:-5348827 | Msa0870750:CDS |
| CCATTACCAACCATATAACG+TGG | 0.638057 | 6_1:+5348687 | None:intergenic |
| GAAAGTCTTACCTCGGCATG+AGG | 0.646247 | 6_1:+5349756 | None:intergenic |
| TTGAAGCACGAATTGCCGCA+TGG | 0.649902 | 6_1:-5350043 | Msa0870750:CDS |
| TCGTGGAAGAAATCAAAATG+TGG | 0.654542 | 6_1:+5349867 | None:intergenic |
| AGAATGAGAATTGTGCTAGG+TGG | 0.675466 | 6_1:-5348737 | Msa0870750:CDS |
| TGGTCAGAATGTGCTCACAA+AGG | 0.676168 | 6_1:-5349593 | Msa0870750:CDS |
| CAGTGATTGAAGGTGAGAAG+TGG | 0.688855 | 6_1:-5348842 | Msa0870750:CDS |
| AGTAACAATGGAAGAAAACG+AGG | 0.692940 | 6_1:+5353183 | None:intergenic |
| GCATGGACATTCCTTCCCGT+AGG | 0.694487 | 6_1:-5350026 | Msa0870750:intron |
| GAGAGCTGAGTAACACGTGT+CGG | 0.695014 | 6_1:+5352949 | None:intergenic |
| ATTTCAGTAAAACCTCGGAA+GGG | 0.704588 | 6_1:-5348936 | Msa0870750:intron |
| TCAGCACCGTTGCAACACGA+TGG | 0.711185 | 6_1:+5349820 | None:intergenic |
| TACGGGAAGGAATGTCCATG+CGG | 0.724567 | 6_1:+5350028 | None:intergenic |
| ATGAAGACTGAAGAACAACA+AGG | 0.733543 | 6_1:+5348908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTTAATTAAATGTTAAT+TGG | + | chr6_1:5348520-5348539 | None:intergenic | 10.0% |
| !! | ATAAAAAATTATAGTAAACA+AGG | - | chr6_1:5350953-5350972 | Msa0870750:intron | 10.0% |
| !! | TAAAAAATTATAGTAAACAA+GGG | - | chr6_1:5350954-5350973 | Msa0870750:intron | 10.0% |
| !!! | AAAATCTTATCTTTTTTTGT+TGG | - | chr6_1:5348826-5348845 | Msa0870750:CDS | 15.0% |
| !!! | AAATCTTATCTTTTTTTGTT+GGG | - | chr6_1:5348827-5348846 | Msa0870750:CDS | 15.0% |
| !!! | TGATTTTTTTTTTTTTGTTG+TGG | - | chr6_1:5349007-5349026 | Msa0870750:intron | 15.0% |
| !!! | GTTTTTTTAGTGATTATTAT+TGG | - | chr6_1:5349114-5349133 | Msa0870750:intron | 15.0% |
| !! | TCTGAAAATATGTTTATAAA+CGG | - | chr6_1:5349636-5349655 | Msa0870750:intron | 15.0% |
| !! | AATAATCTGAAAACAATTTA+TGG | + | chr6_1:5352551-5352570 | None:intergenic | 15.0% |
| !!! | AATCTTATCTTTTTTTGTTG+GGG | - | chr6_1:5348828-5348847 | Msa0870750:CDS | 20.0% |
| !!! | GTTTTCAATTTTTTGTTTTC+AGG | - | chr6_1:5348852-5348871 | Msa0870750:CDS | 20.0% |
| !!! | TTAGTGATTATTATTGGTTT+TGG | - | chr6_1:5349120-5349139 | Msa0870750:intron | 20.0% |
| !! | CTGAAAATATGTTTATAAAC+GGG | - | chr6_1:5349637-5349656 | Msa0870750:intron | 20.0% |
| !!! | CTGAAAATATTTTTATACGT+GGG | - | chr6_1:5350404-5350423 | Msa0870750:intron | 20.0% |
| !! | TACATGTCAAAATTTATCAT+AGG | - | chr6_1:5350651-5350670 | Msa0870750:intron | 20.0% |
| !! | TAGTGTCTATTTGAATATAA+TGG | - | chr6_1:5351413-5351432 | Msa0870750:intron | 20.0% |
| !! | TACAAATATTTGTAGAGAAA+GGG | + | chr6_1:5351471-5351490 | None:intergenic | 20.0% |
| !! | TTACAAATATTTGTAGAGAA+AGG | + | chr6_1:5351472-5351491 | None:intergenic | 20.0% |
| !! | AAAGATTAAACAAAAGAAAG+AGG | + | chr6_1:5351776-5351795 | None:intergenic | 20.0% |
| !!! | CTTTCTTTTGTTTAATCTTT+AGG | - | chr6_1:5351776-5351795 | Msa0870750:intron | 20.0% |
| !! | ACAAATAGATTAATCAAAAC+AGG | + | chr6_1:5352424-5352443 | None:intergenic | 20.0% |
| !!! | TGTTTATATTTCGAGTTTAT+TGG | + | chr6_1:5352827-5352846 | None:intergenic | 20.0% |
| !! | AGATTTATTTGTAAAGGAAA+GGG | + | chr6_1:5353365-5353384 | None:intergenic | 20.0% |
| ! | AGAATGAGAATTCAAGAAAT+GGG | + | chr6_1:5348788-5348807 | None:intergenic | 25.0% |
| ! | AAGAATGAGAATTCAAGAAA+TGG | + | chr6_1:5348789-5348808 | None:intergenic | 25.0% |
| ! | AAAAAAGGTTTATACTACCT+AGG | + | chr6_1:5348944-5348963 | None:intergenic | 25.0% |
| ! | TTTGAACAACACAAGAAAAA+AGG | + | chr6_1:5348959-5348978 | None:intergenic | 25.0% |
| !!! | TTTTTCTTGTGTTGTTCAAA+AGG | - | chr6_1:5348959-5348978 | Msa0870750:intron | 25.0% |
| !!! | TTTTCTTGTGTTGTTCAAAA+GGG | - | chr6_1:5348960-5348979 | Msa0870750:intron | 25.0% |
| ! | ATGTGATCATCTTATTGAAT+TGG | - | chr6_1:5349088-5349107 | Msa0870750:intron | 25.0% |
| ! | TCGATAACATGTTTATAAGT+CGG | - | chr6_1:5349257-5349276 | Msa0870750:intron | 25.0% |
| !! | TCTACTTATAAGCACATTTT+CGG | + | chr6_1:5349366-5349385 | None:intergenic | 25.0% |
| ! | CTAATTCAAACCTATAAAAC+CGG | + | chr6_1:5349410-5349429 | None:intergenic | 25.0% |
| ! | AAAATATGTTTATAAACGGG+AGG | - | chr6_1:5349640-5349659 | Msa0870750:intron | 25.0% |
| !! | CTGCTTAAAAACATATTTTC+AGG | + | chr6_1:5349975-5349994 | None:intergenic | 25.0% |
| !!! | CTGAAAATATGTTTTTAAGC+AGG | - | chr6_1:5349973-5349992 | Msa0870750:intron | 25.0% |
| !!! | CCACTGTAAGATTTTTTTTA+AGG | + | chr6_1:5350199-5350218 | None:intergenic | 25.0% |
| ! | CCTTAAAAAAAATCTTACAG+TGG | - | chr6_1:5350196-5350215 | Msa0870750:intron | 25.0% |
| !! | CCACGTATAAAAATATTTTC+AGG | + | chr6_1:5350406-5350425 | None:intergenic | 25.0% |
| !!! | CCTGAAAATATTTTTATACG+TGG | - | chr6_1:5350403-5350422 | Msa0870750:intron | 25.0% |
| !! | TTTTGTGATATTATAGTCGA+AGG | - | chr6_1:5350503-5350522 | Msa0870750:intron | 25.0% |
| !!! | ATTGTTTTTATTCCAACACA+TGG | - | chr6_1:5350725-5350744 | Msa0870750:intron | 25.0% |
| !! | GTGTCGTTAAAGATTAAAAA+TGG | + | chr6_1:5350779-5350798 | None:intergenic | 25.0% |
| !! | AAATGTGTTAGAAACTTGTT+TGG | - | chr6_1:5350810-5350829 | Msa0870750:intron | 25.0% |
| ! | GATCAATCTCATAAAAATGT+TGG | + | chr6_1:5350840-5350859 | None:intergenic | 25.0% |
| !! | ATTTTTATGAGATTGATCCA+TGG | - | chr6_1:5350842-5350861 | Msa0870750:intron | 25.0% |
| !! | AACACAGATTCATAATGTTT+TGG | + | chr6_1:5351002-5351021 | None:intergenic | 25.0% |
| !!! | TGTAACTTGATAATGATGAA+TGG | + | chr6_1:5351273-5351292 | None:intergenic | 25.0% |
| ! | TCATCATTATCAAGTTACAA+AGG | - | chr6_1:5351274-5351293 | Msa0870750:intron | 25.0% |
| ! | CTGGTAACAATTTAATAAAC+TGG | + | chr6_1:5351566-5351585 | None:intergenic | 25.0% |
| ! | CTTCATAAGAAAGAATTTGT+AGG | + | chr6_1:5351637-5351656 | None:intergenic | 25.0% |
| ! | GTGAAACAAAAAACCTAAAA+CGG | + | chr6_1:5351888-5351907 | None:intergenic | 25.0% |
| ! | TATTTGTCTAATGTTGAGAA+GGG | - | chr6_1:5352065-5352084 | Msa0870750:intron | 25.0% |
| ! | TTCACATGTATTTGATTATC+TGG | - | chr6_1:5352124-5352143 | Msa0870750:intron | 25.0% |
| !!! | AGTAATTTGATTGCTTTTTC+AGG | - | chr6_1:5352215-5352234 | Msa0870750:intron | 25.0% |
| !!! | GTAATTTGATTGCTTTTTCA+GGG | - | chr6_1:5352216-5352235 | Msa0870750:intron | 25.0% |
| !!! | TAATTTGATTGCTTTTTCAG+GGG | - | chr6_1:5352217-5352236 | Msa0870750:intron | 25.0% |
| ! | AAGATATTAGCTCATTTCAA+TGG | - | chr6_1:5352322-5352341 | Msa0870750:intron | 25.0% |
| !!! | AAATACTTTTGAGACTGTTT+AGG | - | chr6_1:5352495-5352514 | Msa0870750:intron | 25.0% |
| ! | AGCTTATTGTTAGATTATGA+GGG | + | chr6_1:5352850-5352869 | None:intergenic | 25.0% |
| ! | AAGCTTATTGTTAGATTATG+AGG | + | chr6_1:5352851-5352870 | None:intergenic | 25.0% |
| !!! | TAAGCTTTTGTCTCATTTTT+TGG | - | chr6_1:5352864-5352883 | Msa0870750:intron | 25.0% |
| ! | AACTGAATAGAAATGAAGAA+AGG | - | chr6_1:5353318-5353337 | Msa0870750:five_prime_UTR | 25.0% |
| ! | GAGATTTATTTGTAAAGGAA+AGG | + | chr6_1:5353366-5353385 | None:intergenic | 25.0% |
| ! | AAGGAGAGATTTATTTGTAA+AGG | + | chr6_1:5353371-5353390 | None:intergenic | 25.0% |
| !! | AGACATTTGTTAAATGTGAA+AGG | + | chr6_1:5353390-5353409 | None:intergenic | 25.0% |
| AATAAGAGAGATTAGAGAGA+GGG | + | chr6_1:5348572-5348591 | None:intergenic | 30.0% | |
| AAATAAGAGAGATTAGAGAG+AGG | + | chr6_1:5348573-5348592 | None:intergenic | 30.0% | |
| GAGAAAAAACAGAGTAACAA+TGG | + | chr6_1:5348692-5348711 | None:intergenic | 30.0% | |
| ! | ATTATGTTGTGTTGTTATGC+AGG | - | chr6_1:5349030-5349049 | Msa0870750:intron | 30.0% |
| ! | TTATGTTGTGTTGTTATGCA+GGG | - | chr6_1:5349031-5349050 | Msa0870750:intron | 30.0% |
| ATAACATGTTTATAAGTCGG+AGG | - | chr6_1:5349260-5349279 | Msa0870750:intron | 30.0% | |
| !! | ACCTTATAAGCTGATTTTGT+AGG | - | chr6_1:5349291-5349310 | Msa0870750:intron | 30.0% |
| !! | CCTTATAAGCTGATTTTGTA+GGG | - | chr6_1:5349292-5349311 | Msa0870750:intron | 30.0% |
| !! | CGGTTTTATAGGTTTGAATT+AGG | - | chr6_1:5349408-5349427 | Msa0870750:intron | 30.0% |
| TATAGGTTTGAATTAGGCTA+TGG | - | chr6_1:5349414-5349433 | Msa0870750:intron | 30.0% | |
| TTGAATTAGGCTATGGTATT+TGG | - | chr6_1:5349421-5349440 | Msa0870750:intron | 30.0% | |
| ATTCCTTCACAAATTTCCTA+TGG | - | chr6_1:5349546-5349565 | Msa0870750:intron | 30.0% | |
| AAAATCGGTGTGTAAAGTAA+GGG | + | chr6_1:5349669-5349688 | None:intergenic | 30.0% | |
| ATTCCTTCACAAATTTCCTA+TGG | - | chr6_1:5349546-5349565 | Msa0870750:intron | 30.0% | |
| !! | AAAACTGGCTTGTAAAGTAA+GGG | + | chr6_1:5350005-5350024 | None:intergenic | 30.0% |
| ! | GTGAGATCAGTGTTATTAAA+TGG | + | chr6_1:5350246-5350265 | None:intergenic | 30.0% |
| CCCTCTTATAAACTAATTTC+CGG | + | chr6_1:5350273-5350292 | None:intergenic | 30.0% | |
| ! | CCGGAAATTAGTTTATAAGA+GGG | - | chr6_1:5350270-5350289 | Msa0870750:intron | 30.0% |
| ATATAACAAGAACCATGTGT+TGG | + | chr6_1:5350740-5350759 | None:intergenic | 30.0% | |
| ! | AACACATGGTTCTTGTTATA+TGG | - | chr6_1:5350739-5350758 | Msa0870750:intron | 30.0% |
| AACATTATGAATCTGTGTTC+AGG | - | chr6_1:5351003-5351022 | Msa0870750:intron | 30.0% | |
| AACCATTAAGCATGAAGATA+TGG | + | chr6_1:5351047-5351066 | None:intergenic | 30.0% | |
| !!! | TTTTTTAAAGATGACGCCAA+TGG | + | chr6_1:5351236-5351255 | None:intergenic | 30.0% |
| !! | ACTTGATAATGATGAATGGT+TGG | + | chr6_1:5351269-5351288 | None:intergenic | 30.0% |
| AACCTTGATGCATTTAATTG+TGG | - | chr6_1:5351382-5351401 | Msa0870750:intron | 30.0% | |
| ATACCAACACTTCAAATTGA+AGG | - | chr6_1:5351491-5351510 | Msa0870750:intron | 30.0% | |
| AATTTGTAGGTATGAAGCAT+CGG | + | chr6_1:5351624-5351643 | None:intergenic | 30.0% | |
| CATATGTCAAACAACTGAAT+TGG | + | chr6_1:5351714-5351733 | None:intergenic | 30.0% | |
| !! | CTTTAGGATGAAATAGTTTC+TGG | - | chr6_1:5351792-5351811 | Msa0870750:intron | 30.0% |
| GTATTTGTCTAATGTTGAGA+AGG | - | chr6_1:5352064-5352083 | Msa0870750:intron | 30.0% | |
| TCAAATTACTCATCTAGTCA+TGG | + | chr6_1:5352205-5352224 | None:intergenic | 30.0% | |
| ! | ATTAAGTTGTTTGTCCAAAC+AGG | - | chr6_1:5352666-5352685 | Msa0870750:intron | 30.0% |
| ! | TTAAGTTGTTTGTCCAAACA+GGG | - | chr6_1:5352667-5352686 | Msa0870750:intron | 30.0% |
| ! | TCAGTAAGCTATTCTGTTTT+TGG | - | chr6_1:5352762-5352781 | Msa0870750:intron | 30.0% |
| !! | CAGTAAGCTATTCTGTTTTT+GGG | - | chr6_1:5352763-5352782 | Msa0870750:intron | 30.0% |
| !!! | AGTAAGCTATTCTGTTTTTG+GGG | - | chr6_1:5352764-5352783 | Msa0870750:intron | 30.0% |
| !!! | TTTGTCTCATTTTTTGGCTT+AGG | - | chr6_1:5352870-5352889 | Msa0870750:intron | 30.0% |
| TGAGAAAAATCCACGTTATA+TGG | - | chr6_1:5353163-5353182 | Msa0870750:CDS | 30.0% | |
| AAAAATCCACGTTATATGGT+TGG | - | chr6_1:5353167-5353186 | Msa0870750:CDS | 30.0% | |
| !!! | TTAGAGAGAGGGTTTTGTTT+AGG | + | chr6_1:5348561-5348580 | None:intergenic | 35.0% |
| AGTAACAATGGAAGAAAACG+AGG | + | chr6_1:5348680-5348699 | None:intergenic | 35.0% | |
| GTTTCTTCAATTCGATTACC+TGG | - | chr6_1:5348722-5348741 | Msa0870750:CDS | 35.0% | |
| TTCAATTCGATTACCTGGTT+TGG | - | chr6_1:5348727-5348746 | Msa0870750:CDS | 35.0% | |
| ! | TTGTTTTCTTCTTCCAAACC+AGG | + | chr6_1:5348743-5348762 | None:intergenic | 35.0% |
| !!! | CAATTTTTTGTTTTCAGGCG+TGG | - | chr6_1:5348857-5348876 | Msa0870750:CDS | 35.0% |
| ! | GTTGTTCAAAAGGGTTGTTT+TGG | - | chr6_1:5348969-5348988 | Msa0870750:intron | 35.0% |
| CAAAATCAGCTTATAAGGTG+AGG | + | chr6_1:5349290-5349309 | None:intergenic | 35.0% | |
| CCCTACAAAATCAGCTTATA+AGG | + | chr6_1:5349295-5349314 | None:intergenic | 35.0% | |
| ! | TGATTTTGTAGGGTTCAGTT+AGG | - | chr6_1:5349302-5349321 | Msa0870750:intron | 35.0% |
| !! | GGTTCAGTTAGGATTTGTTA+TGG | - | chr6_1:5349313-5349332 | Msa0870750:intron | 35.0% |
| !!! | AATTTTTTGCCTACCAGCAT+TGG | + | chr6_1:5349479-5349498 | None:intergenic | 35.0% |
| CTGTTATTAAATGGCAGTCA+CGG | + | chr6_1:5349603-5349622 | None:intergenic | 35.0% | |
| ! | TGACTGCCATTTAATAACAG+TGG | - | chr6_1:5349603-5349622 | Msa0870750:CDS | 35.0% |
| GTGAGACCACTGTTATTAAA+TGG | + | chr6_1:5349612-5349631 | None:intergenic | 35.0% | |
| CAAAATCGGTGTGTAAAGTA+AGG | + | chr6_1:5349670-5349689 | None:intergenic | 35.0% | |
| !!! | ACTTTACACACCGATTTTGT+AGG | - | chr6_1:5349671-5349690 | Msa0870750:intron | 35.0% |
| CAAGCTCAATCCTACAAAAT+CGG | + | chr6_1:5349684-5349703 | None:intergenic | 35.0% | |
| ! | TTGTTTACACAGCAGACTTT+TGG | + | chr6_1:5349829-5349848 | None:intergenic | 35.0% |
| TTATTAAATGGCAGCCATAG+TGG | + | chr6_1:5349936-5349955 | None:intergenic | 35.0% | |
| ! | GTGAGACCAGTGTTATTAAA+TGG | + | chr6_1:5349948-5349967 | None:intergenic | 35.0% |
| !! | CAAAACTGGCTTGTAAAGTA+AGG | + | chr6_1:5350006-5350025 | None:intergenic | 35.0% |
| !! | ACTTTACAAGCCAGTTTTGT+AGG | - | chr6_1:5350007-5350026 | Msa0870750:intron | 35.0% |
| ! | AAAAGTCTCAGTGTTGTTGA+TGG | - | chr6_1:5350095-5350114 | Msa0870750:intron | 35.0% |
| TTATTAAATGGCAGCCATGA+CGG | + | chr6_1:5350234-5350253 | None:intergenic | 35.0% | |
| ! | GCCGGAAATTAGTTTATAAG+AGG | - | chr6_1:5350269-5350288 | Msa0870750:intron | 35.0% |
| CTAACTCAAACATGCAAAAC+TGG | + | chr6_1:5350313-5350332 | None:intergenic | 35.0% | |
| !! | CAGTTTTGCATGTTTGAGTT+AGG | - | chr6_1:5350311-5350330 | Msa0870750:intron | 35.0% |
| ACAGAAGCGATTTATAAGGT+TGG | + | chr6_1:5350436-5350455 | None:intergenic | 35.0% | |
| ACCTTATAAATCGCTTCTGT+AGG | - | chr6_1:5350436-5350455 | Msa0870750:intron | 35.0% | |
| CCTTATAAATCGCTTCTGTA+GGG | - | chr6_1:5350437-5350456 | Msa0870750:intron | 35.0% | |
| ATTATAGTCGAAGGATAAGC+TGG | - | chr6_1:5350512-5350531 | Msa0870750:intron | 35.0% | |
| AAACAAATCACTCATCTCCA+TGG | + | chr6_1:5350862-5350881 | None:intergenic | 35.0% | |
| CTCCATATCTTCATGCTTAA+TGG | - | chr6_1:5351042-5351061 | Msa0870750:intron | 35.0% | |
| TCCTATCTAGATTCTTCCTT+TGG | - | chr6_1:5351097-5351116 | Msa0870750:intron | 35.0% | |
| TCCAAAGGAAGAATCTAGAT+AGG | + | chr6_1:5351101-5351120 | None:intergenic | 35.0% | |
| ! | CTACATTTTCACAACTCCAA+AGG | + | chr6_1:5351116-5351135 | None:intergenic | 35.0% |
| TTGGAGTTGTGAAAATGTAG+TGG | - | chr6_1:5351116-5351135 | Msa0870750:intron | 35.0% | |
| AAGATGATGAGGGAAAAAGT+AGG | + | chr6_1:5351166-5351185 | None:intergenic | 35.0% | |
| CCTCATAAACAAGATGATGA+GGG | + | chr6_1:5351176-5351195 | None:intergenic | 35.0% | |
| CACCACAATTAAATGCATCA+AGG | + | chr6_1:5351387-5351406 | None:intergenic | 35.0% | |
| AAAGGGTTATTGTGAAAGCT+GGG | + | chr6_1:5351454-5351473 | None:intergenic | 35.0% | |
| ! | CAAGTATTGCACTACATGAA+CGG | - | chr6_1:5351957-5351976 | Msa0870750:intron | 35.0% |
| TCGTGGAAGAAATCAAAATG+TGG | + | chr6_1:5351996-5352015 | None:intergenic | 35.0% | |
| !!! | TTTTGATTTCTTCCACGACA+AGG | - | chr6_1:5351998-5352017 | Msa0870750:intron | 35.0% |
| TACATGTGAAAGTCTTACCT+CGG | + | chr6_1:5352114-5352133 | None:intergenic | 35.0% | |
| ! | TTTCTTTTGTTAGCGAGTGT+AGG | + | chr6_1:5352172-5352191 | None:intergenic | 35.0% |
| CTGTGATTTCAGTAAAACCT+CGG | - | chr6_1:5352919-5352938 | Msa0870750:intron | 35.0% | |
| ATTTCAGTAAAACCTCGGAA+GGG | - | chr6_1:5352924-5352943 | Msa0870750:intron | 35.0% | |
| ATGAAGACTGAAGAACAACA+AGG | + | chr6_1:5352955-5352974 | None:intergenic | 35.0% | |
| ! | ATGCAAGCTTTTTGAATCTG+TGG | + | chr6_1:5352988-5353007 | None:intergenic | 35.0% |
| ACAGATTCAAAAAGCTTGCA+TGG | - | chr6_1:5352987-5353006 | Msa0870750:CDS | 35.0% | |
| ATGAGAATGAGAATTGTGCT+AGG | - | chr6_1:5353120-5353139 | Msa0870750:CDS | 35.0% | |
| AATGTTTGCTCTTCTTAGAG+AGG | - | chr6_1:5353227-5353246 | Msa0870750:five_prime_UTR | 35.0% | |
| TCTTCTTAGAGAGGTTATCA+TGG | - | chr6_1:5353236-5353255 | Msa0870750:five_prime_UTR | 35.0% | |
| ! | GATTCCCACAGATTTGAGTT+TGG | + | chr6_1:5348472-5348491 | None:intergenic | 40.0% |
| ACAATGGAAGAAAACGAGGT+TGG | + | chr6_1:5348676-5348695 | None:intergenic | 40.0% | |
| !!! | TTTTGTTTTCAGGCGTGGAT+CGG | - | chr6_1:5348862-5348881 | Msa0870750:CDS | 40.0% |
| !!! | AAGGGTTGTTTTGGTTTTCG+AGG | - | chr6_1:5348978-5348997 | Msa0870750:intron | 40.0% |
| CATGTTCCATATTGAGAGTC+TGG | - | chr6_1:5349216-5349235 | Msa0870750:intron | 40.0% | |
| ! | TTTTCGCCAGACTCTCAATA+TGG | + | chr6_1:5349225-5349244 | None:intergenic | 40.0% |
| ! | AAGCACATTTTCGGAACATC+AGG | + | chr6_1:5349357-5349376 | None:intergenic | 40.0% |
| GCATTTATCGTCTTACAAGC+CGG | - | chr6_1:5349388-5349407 | Msa0870750:intron | 40.0% | |
| !! | GTCTTACAAGCCGGTTTTAT+AGG | - | chr6_1:5349397-5349416 | Msa0870750:intron | 40.0% |
| GTCCTATAAACAAGCCAATC+CGG | - | chr6_1:5349500-5349519 | Msa0870750:intron | 40.0% | |
| TGAAGGAATGTCCACCATAA+GGG | + | chr6_1:5349535-5349554 | None:intergenic | 40.0% | |
| CCACCATAGGAAATTTGTGA+AGG | + | chr6_1:5349552-5349571 | None:intergenic | 40.0% | |
| CCTTCACAAATTTCCTATGG+TGG | - | chr6_1:5349549-5349568 | Msa0870750:intron | 40.0% | |
| TTATTAAATGGCAGTCACGG+TGG | + | chr6_1:5349600-5349619 | None:intergenic | 40.0% | |
| ! | CGATTTTGTAGGATTGAGCT+TGG | - | chr6_1:5349682-5349701 | Msa0870750:intron | 40.0% |
| TCTTATCAGTTATCACACCC+AGG | + | chr6_1:5349755-5349774 | None:intergenic | 40.0% | |
| TTGTGAAGGAATGTCTACCA+TGG | + | chr6_1:5349874-5349893 | None:intergenic | 40.0% | |
| CCTTCACAAATTTCCTATGG+CGG | - | chr6_1:5349549-5349568 | Msa0870750:intron | 40.0% | |
| ! | TGGCTGCCATTTAATAACAC+TGG | - | chr6_1:5349939-5349958 | Msa0870750:intron | 40.0% |
| CTAACTCAAGCCTACAAAAC+TGG | + | chr6_1:5350020-5350039 | None:intergenic | 40.0% | |
| !! | CAGTTTTGTAGGCTTGAGTT+AGG | - | chr6_1:5350018-5350037 | Msa0870750:intron | 40.0% |
| !! | GTGTTGTTGATGGTGGTATA+TGG | - | chr6_1:5350105-5350124 | Msa0870750:intron | 40.0% |
| !! | TTGTTGATGGTGGTATATGG+TGG | - | chr6_1:5350108-5350127 | Msa0870750:intron | 40.0% |
| !! | TGTGTTATGAGGCGGATTTT+TGG | + | chr6_1:5350138-5350157 | None:intergenic | 40.0% |
| TAACACTGATCTCACATTGC+CGG | - | chr6_1:5350251-5350270 | Msa0870750:intron | 40.0% | |
| TCAAACATGCAAAACTGGCT+TGG | + | chr6_1:5350308-5350327 | None:intergenic | 40.0% | |
| ! | TGCTCGAGATTTTCAATCCT+TGG | - | chr6_1:5350359-5350378 | Msa0870750:intron | 40.0% |
| CCCTACAGAAGCGATTTATA+AGG | + | chr6_1:5350440-5350459 | None:intergenic | 40.0% | |
| AGTGAAGTCAGAACTAGTTC+TGG | - | chr6_1:5350579-5350598 | Msa0870750:intron | 40.0% | |
| ! | GTGAAGTCAGAACTAGTTCT+GGG | - | chr6_1:5350580-5350599 | Msa0870750:intron | 40.0% |
| GATGTTTCTCAACAAGCAAC+AGG | - | chr6_1:5350602-5350621 | Msa0870750:intron | 40.0% | |
| ! | CCCTCATCATCTTGTTTATG+AGG | - | chr6_1:5351173-5351192 | Msa0870750:intron | 40.0% |
| GCCTCATAAACAAGATGATG+AGG | + | chr6_1:5351177-5351196 | None:intergenic | 40.0% | |
| !!! | CTTTATTTTCTCAGCGCCAT+TGG | - | chr6_1:5351217-5351236 | Msa0870750:intron | 40.0% |
| GAAAGGGTTATTGTGAAAGC+TGG | + | chr6_1:5351455-5351474 | None:intergenic | 40.0% | |
| ! | ACGCCTTCAATTTGAAGTGT+TGG | + | chr6_1:5351497-5351516 | None:intergenic | 40.0% |
| ! | ACTTCAAATTGAAGGCGTGT+CGG | - | chr6_1:5351499-5351518 | Msa0870750:intron | 40.0% |
| ACAGACACAAACACTGATCA+AGG | + | chr6_1:5351600-5351619 | None:intergenic | 40.0% | |
| TGGTGTCTACTACTTACCTA+CGG | + | chr6_1:5351853-5351872 | None:intergenic | 40.0% | |
| TAGTAGACACCATCATGCTT+TGG | - | chr6_1:5351861-5351880 | Msa0870750:intron | 40.0% | |
| TAAAACGGACCAAAGCATGA+TGG | + | chr6_1:5351873-5351892 | None:intergenic | 40.0% | |
| ! | ATCATGCTTTGGTCCGTTTT+AGG | - | chr6_1:5351872-5351891 | Msa0870750:intron | 40.0% |
| AGCTCTTATCCATCAGAGAA+TGG | - | chr6_1:5351924-5351943 | Msa0870750:intron | 40.0% | |
| ATAGACTCACCATTCTCTGA+TGG | + | chr6_1:5351936-5351955 | None:intergenic | 40.0% | |
| TTGTCTAATGTTGAGAAGGG+TGG | - | chr6_1:5352068-5352087 | Msa0870750:intron | 40.0% | |
| !!! | TTTGATTGCTTTTTCAGGGG+AGG | - | chr6_1:5352220-5352239 | Msa0870750:intron | 40.0% |
| AGACTGTTTAGGAGAGCTTA+TGG | - | chr6_1:5352506-5352525 | Msa0870750:intron | 40.0% | |
| ATGAAAATGCACACCCTGTT+TGG | + | chr6_1:5352683-5352702 | None:intergenic | 40.0% | |
| !! | TTTTTGGGGACGAATGAGAT+TGG | - | chr6_1:5352778-5352797 | Msa0870750:CDS | 40.0% |
| !! | TTTTGGGGACGAATGAGATT+GGG | - | chr6_1:5352779-5352798 | Msa0870750:CDS | 40.0% |
| GATTTCAGTAAAACCTCGGA+AGG | - | chr6_1:5352923-5352942 | Msa0870750:intron | 40.0% | |
| !! | TCGTATCGGTTTCTCAAAGT+CGG | + | chr6_1:5353069-5353088 | None:intergenic | 40.0% |
| AGAATGAGAATTGTGCTAGG+TGG | - | chr6_1:5353123-5353142 | Msa0870750:CDS | 40.0% | |
| GAATGAGAATTGTGCTAGGT+GGG | - | chr6_1:5353124-5353143 | Msa0870750:CDS | 40.0% | |
| CCATTACCAACCATATAACG+TGG | + | chr6_1:5353176-5353195 | None:intergenic | 40.0% | |
| !! | CCACGTTATATGGTTGGTAA+TGG | - | chr6_1:5353173-5353192 | Msa0870750:CDS | 40.0% |
| !! | CGTTATATGGTTGGTAATGG+AGG | - | chr6_1:5353176-5353195 | Msa0870750:CDS | 40.0% |
| !! | GTTGGTAATGGAGGAGTTAA+AGG | - | chr6_1:5353185-5353204 | Msa0870750:CDS | 40.0% |
| AAGAAAGGAGTTCTCCTCTA+GGG | - | chr6_1:5353333-5353352 | Msa0870750:five_prime_UTR | 40.0% | |
| AGACGCCAAACTCAAATCTG+TGG | - | chr6_1:5348464-5348483 | Msa0870750:three_prime_UTR | 45.0% | |
| GACGCCAAACTCAAATCTGT+GGG | - | chr6_1:5348465-5348484 | Msa0870750:three_prime_UTR | 45.0% | |
| TAGGCTATGGTATTTGGCCA+TGG | - | chr6_1:5349427-5349446 | Msa0870750:intron | 45.0% | |
| CTATGGTATTTGGCCATGGT+GGG | - | chr6_1:5349431-5349450 | Msa0870750:intron | 45.0% | |
| GTGAAGGAATGTCCACCATA+AGG | + | chr6_1:5349536-5349555 | None:intergenic | 45.0% | |
| GATCTTAAGACGACCACCAT+AGG | + | chr6_1:5349565-5349584 | None:intergenic | 45.0% | |
| GCTGTGTAAACAACCCATTG+CGG | - | chr6_1:5349836-5349855 | Msa0870750:CDS | 45.0% | |
| CCGCCATAGGAAATTTGTGA+AGG | + | chr6_1:5349888-5349907 | None:intergenic | 45.0% | |
| !!! | GATTTTAAGACGACCGCCAT+AGG | + | chr6_1:5349901-5349920 | None:intergenic | 45.0% |
| TGCTCCTGATGTTCAGTTCT+GGG | - | chr6_1:5350066-5350085 | Msa0870750:intron | 45.0% | |
| ! | AGTCTCAGTGTTGTTGATGG+TGG | - | chr6_1:5350098-5350117 | Msa0870750:intron | 45.0% |
| !! | TGATGGTGGTATATGGTGGA+AGG | - | chr6_1:5350112-5350131 | Msa0870750:intron | 45.0% |
| GGTTGTCTTAAGATCCGTCA+TGG | - | chr6_1:5350217-5350236 | Msa0870750:intron | 45.0% | |
| !! | ATGCAAAACTGGCTTGGTGA+GGG | + | chr6_1:5350302-5350321 | None:intergenic | 45.0% |
| GTAAGACTCTCAACACACCA+AGG | + | chr6_1:5350379-5350398 | None:intergenic | 45.0% | |
| CGCTTCTGTAGGGTTGAATT+AGG | - | chr6_1:5350447-5350466 | Msa0870750:intron | 45.0% | |
| GGATAAGCTGGAGAAGTCTA+TGG | - | chr6_1:5350524-5350543 | Msa0870750:intron | 45.0% | |
| TAAGCTGGAGAAGTCTATGG+TGG | - | chr6_1:5350527-5350546 | Msa0870750:intron | 45.0% | |
| !! | ATGGTGGCGGATAATGAATC+TGG | - | chr6_1:5350543-5350562 | Msa0870750:intron | 45.0% |
| AACACTGATCAAGGACACGT+CGG | + | chr6_1:5351591-5351610 | None:intergenic | 45.0% | |
| TCTACTACTTACCTACGGGA+AGG | + | chr6_1:5351848-5351867 | None:intergenic | 45.0% | |
| GGTGTCTACTACTTACCTAC+GGG | + | chr6_1:5351852-5351871 | None:intergenic | 45.0% | |
| GACAAGGCTAATCAACGACT+TGG | - | chr6_1:5352014-5352033 | Msa0870750:intron | 45.0% | |
| ! | AAGGCTAATCAACGACTTGG+CGG | - | chr6_1:5352017-5352036 | Msa0870750:intron | 45.0% |
| !! | AACCATTTTTCCTCATGCCG+AGG | - | chr6_1:5352094-5352113 | Msa0870750:intron | 45.0% |
| TACCTCGGCATGAGGAAAAA+TGG | + | chr6_1:5352099-5352118 | None:intergenic | 45.0% | |
| ! | TCTGACCAGCTCTCATCTTT+TGG | + | chr6_1:5352255-5352274 | None:intergenic | 45.0% |
| TGGTCAGAATGTGCTCACAA+AGG | - | chr6_1:5352267-5352286 | Msa0870750:intron | 45.0% | |
| TGTGCTCACAAAGGATATGC+AGG | - | chr6_1:5352276-5352295 | Msa0870750:intron | 45.0% | |
| CACTTCTCACCTTCAATCAC+TGG | + | chr6_1:5353020-5353039 | None:intergenic | 45.0% | |
| CAGTGATTGAAGGTGAGAAG+TGG | - | chr6_1:5353018-5353037 | Msa0870750:intron | 45.0% | |
| AGAAGTGGTCAGCAACAAAG+TGG | - | chr6_1:5353033-5353052 | Msa0870750:intron | 45.0% | |
| GAAACCGATACGACAAGCAT+TGG | - | chr6_1:5353076-5353095 | Msa0870750:intron | 45.0% | |
| TCCTCCAATGCTTGTCGTAT+CGG | + | chr6_1:5353083-5353102 | None:intergenic | 45.0% | |
| GAAGAAAGGAGTTCTCCTCT+AGG | - | chr6_1:5353332-5353351 | Msa0870750:five_prime_UTR | 45.0% | |
| GGAAAGGGTAAAAACCCTAG+AGG | + | chr6_1:5353350-5353369 | None:intergenic | 45.0% | |
| !!! | TTACTATAATTTTTTATATT+GGG | + | chr6_1:5350950-5350969 | None:intergenic | 5.0% |
| !!! | TTTACTATAATTTTTTATAT+TGG | + | chr6_1:5350951-5350970 | None:intergenic | 5.0% |
| !! | TTCAGGCGTGGATCGGTTTT+TGG | - | chr6_1:5348869-5348888 | Msa0870750:CDS | 50.0% |
| GAGAGCTGAGTAACACGTGT+CGG | + | chr6_1:5348914-5348933 | None:intergenic | 50.0% | |
| ! | CATCAGGAGCACAACATGAG+CGG | + | chr6_1:5349341-5349360 | None:intergenic | 50.0% |
| GCTATGGTATTTGGCCATGG+TGG | - | chr6_1:5349430-5349449 | Msa0870750:intron | 50.0% | |
| GTGAGACTCTTAACCCACCA+TGG | + | chr6_1:5349447-5349466 | None:intergenic | 50.0% | |
| TCACACAGTGTTGCCAATGC+TGG | - | chr6_1:5349463-5349482 | Msa0870750:intron | 50.0% | |
| ACAGTGTTGCCAATGCTGGT+AGG | - | chr6_1:5349467-5349486 | Msa0870750:intron | 50.0% | |
| !! | GGCCGGATTGGCTTGTTTAT+AGG | + | chr6_1:5349505-5349524 | None:intergenic | 50.0% |
| AAACAAGCCAATCCGGCCTA+TGG | - | chr6_1:5349507-5349526 | Msa0870750:intron | 50.0% | |
| AAATGGCAGTCACGGTGGAA+TGG | + | chr6_1:5349595-5349614 | None:intergenic | 50.0% | |
| ! | TCAGGACAGGAGTGCAACAA+GGG | + | chr6_1:5349724-5349743 | None:intergenic | 50.0% |
| ! | ATCAGGACAGGAGTGCAACA+AGG | + | chr6_1:5349725-5349744 | None:intergenic | 50.0% |
| CTGTCCTGATGTTCAGTCCT+GGG | - | chr6_1:5349735-5349754 | Msa0870750:intron | 50.0% | |
| GAGAGTCTCACACAGTGTTG+TGG | - | chr6_1:5349783-5349802 | Msa0870750:CDS | 50.0% | |
| AGTCTCACACAGTGTTGTGG+AGG | - | chr6_1:5349786-5349805 | Msa0870750:CDS | 50.0% | |
| GTCTCACACAGTGTTGTGGA+GGG | - | chr6_1:5349787-5349806 | Msa0870750:CDS | 50.0% | |
| GTGTTGTGGAGGGTGGAATA+TGG | - | chr6_1:5349797-5349816 | Msa0870750:CDS | 50.0% | |
| TGGAGGGTGGAATATGGTGA+AGG | - | chr6_1:5349803-5349822 | Msa0870750:CDS | 50.0% | |
| GTCTACCATGGCAGTGACAT+AGG | + | chr6_1:5349862-5349881 | None:intergenic | 50.0% | |
| ! | ACATCAGGAGCACGACATGA+GGG | + | chr6_1:5350058-5350077 | None:intergenic | 50.0% |
| ! | AACATCAGGAGCACGACATG+AGG | + | chr6_1:5350059-5350078 | None:intergenic | 50.0% |
| GTGCTCCTGATGTTCAGTTC+TGG | - | chr6_1:5350065-5350084 | Msa0870750:CDS | 50.0% | |
| CACACCCAGAACTGAACATC+AGG | + | chr6_1:5350073-5350092 | None:intergenic | 50.0% | |
| CAGTGGCATGTGTTATGAGG+CGG | + | chr6_1:5350146-5350165 | None:intergenic | 50.0% | |
| CTGCAGTGGCATGTGTTATG+AGG | + | chr6_1:5350149-5350168 | None:intergenic | 50.0% | |
| !! | CATGCAAAACTGGCTTGGTG+AGG | + | chr6_1:5350303-5350322 | None:intergenic | 50.0% |
| GGGTTATTGTGAAAGCTGGG+AGG | + | chr6_1:5351451-5351470 | None:intergenic | 50.0% | |
| TTGAAGCACGAATTGCCGCA+TGG | - | chr6_1:5351817-5351836 | Msa0870750:intron | 50.0% | |
| TACGGGAAGGAATGTCCATG+CGG | + | chr6_1:5351835-5351854 | None:intergenic | 50.0% | |
| !! | GTCGTTGATTAGCCTTGTCG+TGG | + | chr6_1:5352013-5352032 | None:intergenic | 50.0% |
| GAAAGTCTTACCTCGGCATG+AGG | + | chr6_1:5352107-5352126 | None:intergenic | 50.0% | |
| !! | GTGTAGGAGTGTTCGTCATG+TGG | + | chr6_1:5352156-5352175 | None:intergenic | 50.0% |
| ATCTCTTGCTTCCACCTGCA+CGG | - | chr6_1:5352397-5352416 | Msa0870750:intron | 50.0% | |
| TAATCAAAACAGGCCCGTGC+AGG | + | chr6_1:5352414-5352433 | None:intergenic | 50.0% | |
| GGAAGCTGTCCAGTGATTGA+AGG | - | chr6_1:5353008-5353027 | Msa0870750:intron | 50.0% | |
| !! | ACCGATACGACAAGCATTGG+AGG | - | chr6_1:5353079-5353098 | Msa0870750:intron | 50.0% |
| !! | CGACAAGCATTGGAGGATGA+TGG | - | chr6_1:5353086-5353105 | Msa0870750:intron | 50.0% |
| !! | TGTGCTAGGTGGGCTAAAGT+TGG | - | chr6_1:5353134-5353153 | Msa0870750:CDS | 50.0% |
| ! | CACGTGTTACTCAGCTCTCG+TGG | - | chr6_1:5348915-5348934 | Msa0870750:CDS | 55.0% |
| CCAGGACTGAACATCAGGAC+AGG | + | chr6_1:5349737-5349756 | None:intergenic | 55.0% | |
| CCTGTCCTGATGTTCAGTCC+TGG | - | chr6_1:5349734-5349753 | Msa0870750:intron | 55.0% | |
| CACACCCAGGACTGAACATC+AGG | + | chr6_1:5349742-5349761 | None:intergenic | 55.0% | |
| TCACACAGTGTTGTGGAGGG+TGG | - | chr6_1:5349790-5349809 | Msa0870750:CDS | 55.0% | |
| GCAGTGACATAGGCCGCAAT+GGG | + | chr6_1:5349852-5349871 | None:intergenic | 55.0% | |
| TCCGCCATGCTGTTCCACTA+TGG | - | chr6_1:5349919-5349938 | Msa0870750:CDS | 55.0% | |
| ! | GCCATAGTGGAACAGCATGG+CGG | + | chr6_1:5349923-5349942 | None:intergenic | 55.0% |
| ! | GCAGCCATAGTGGAACAGCA+TGG | + | chr6_1:5349926-5349945 | None:intergenic | 55.0% |
| ! | CATCAGGAGCACGACATGAG+GGG | + | chr6_1:5350057-5350076 | None:intergenic | 55.0% |
| CACATGCCACTGCAGCCTTA+TGG | - | chr6_1:5350154-5350173 | Msa0870750:intron | 55.0% | |
| GCTGGAGAAGTCTATGGTGG+CGG | - | chr6_1:5350530-5350549 | Msa0870750:intron | 55.0% | |
| TCACACGCGTCAGTGTCATG+CGG | + | chr6_1:5351528-5351547 | None:intergenic | 55.0% | |
| GCATGGACATTCCTTCCCGT+AGG | - | chr6_1:5351834-5351853 | Msa0870750:intron | 55.0% | |
| TCAGCACCGTTGCAACACGA+TGG | + | chr6_1:5352043-5352062 | None:intergenic | 55.0% | |
| CGCAGCCAAAAGATGAGAGC+TGG | - | chr6_1:5352247-5352266 | Msa0870750:intron | 55.0% | |
| TCTCTTGCTTCCACCTGCAC+GGG | - | chr6_1:5352398-5352417 | Msa0870750:intron | 55.0% | |
| CTCAGCTCTCGTGGAGTCCT+AGG | - | chr6_1:5348924-5348943 | Msa0870750:CDS | 60.0% | |
| !! | ACCATAAGGGCGCCATAGGC+CGG | + | chr6_1:5349522-5349541 | None:intergenic | 60.0% |
| !! | GTCCACCATAAGGGCGCCAT+AGG | + | chr6_1:5349526-5349545 | None:intergenic | 60.0% |
| ! | GGACAGGAGTGCAACAAGGG+TGG | + | chr6_1:5349721-5349740 | None:intergenic | 60.0% |
| GGCAGTGACATAGGCCGCAA+TGG | + | chr6_1:5349853-5349872 | None:intergenic | 60.0% | |
| TGCGGCCTATGTCACTGCCA+TGG | - | chr6_1:5349854-5349873 | Msa0870750:CDS | 60.0% | |
| ACAGCGCCATAAGGCTGCAG+TGG | + | chr6_1:5350163-5350182 | None:intergenic | 60.0% | |
| ! | GCAGCCTTATGGCGCTGTCA+TGG | - | chr6_1:5350165-5350184 | Msa0870750:intron | 60.0% |
| GCCTTATGGCGCTGTCATGG+CGG | - | chr6_1:5350168-5350187 | Msa0870750:intron | 60.0% | |
| TCCGCCATGACAGCGCCATA+AGG | + | chr6_1:5350172-5350191 | None:intergenic | 60.0% | |
| GATCAAGGACACGTCGGCAC+TGG | + | chr6_1:5351585-5351604 | None:intergenic | 60.0% | |
| TGGCGGCCATCGTGTTGCAA+CGG | - | chr6_1:5352034-5352053 | Msa0870750:intron | 60.0% | |
| TCAAAACAGGCCCGTGCAGG+TGG | + | chr6_1:5352411-5352430 | None:intergenic | 60.0% | |
| ! | AACAAGGCGTCACCCTTCCG+AGG | + | chr6_1:5352939-5352958 | None:intergenic | 60.0% |
| !! | AAGGGCGCCATAGGCCGGAT+TGG | + | chr6_1:5349517-5349536 | None:intergenic | 65.0% |
| TCCGGCCTATGGCGCCCTTA+TGG | - | chr6_1:5349518-5349537 | Msa0870750:intron | 65.0% | |
| GGCCTATGGCGCCCTTATGG+TGG | - | chr6_1:5349521-5349540 | Msa0870750:intron | 65.0% | |
| GCAGTCACGGTGGAATGGCG+TGG | + | chr6_1:5349590-5349609 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 5348449 | 5353433 | 5348449 | ID=Msa0870750;Name=Msa0870750 |
| chr6_1 | mRNA | 5348449 | 5353433 | 5348449 | ID=Msa0870750-mRNA-1;Parent=Msa0870750;Name=Msa0870750-mRNA-1;_AED=0.10;_eAED=0.10;_QI=219|0.83|1|1|1|1|7|189|279 |
| chr6_1 | exon | 5348449 | 5348951 | 5348449 | ID=Msa0870750-mRNA-1:exon:1731;Parent=Msa0870750-mRNA-1 |
| chr6_1 | exon | 5349585 | 5349645 | 5349585 | ID=Msa0870750-mRNA-1:exon:1730;Parent=Msa0870750-mRNA-1 |
| chr6_1 | exon | 5349767 | 5349942 | 5349767 | ID=Msa0870750-mRNA-1:exon:1729;Parent=Msa0870750-mRNA-1 |
| chr6_1 | exon | 5350027 | 5350084 | 5350027 | ID=Msa0870750-mRNA-1:exon:1728;Parent=Msa0870750-mRNA-1 |
| chr6_1 | exon | 5352773 | 5352830 | 5352773 | ID=Msa0870750-mRNA-1:exon:1727;Parent=Msa0870750-mRNA-1 |
| chr6_1 | exon | 5352937 | 5353008 | 5352937 | ID=Msa0870750-mRNA-1:exon:1726;Parent=Msa0870750-mRNA-1 |
| chr6_1 | exon | 5353114 | 5353433 | 5353114 | ID=Msa0870750-mRNA-1:exon:1725;Parent=Msa0870750-mRNA-1 |
| chr6_1 | five_prime_UTR | 5353215 | 5353433 | 5353215 | ID=Msa0870750-mRNA-1:five_prime_utr;Parent=Msa0870750-mRNA-1 |
| chr6_1 | CDS | 5353114 | 5353214 | 5353114 | ID=Msa0870750-mRNA-1:cds;Parent=Msa0870750-mRNA-1 |
| chr6_1 | CDS | 5352937 | 5353008 | 5352937 | ID=Msa0870750-mRNA-1:cds;Parent=Msa0870750-mRNA-1 |
| chr6_1 | CDS | 5352773 | 5352830 | 5352773 | ID=Msa0870750-mRNA-1:cds;Parent=Msa0870750-mRNA-1 |
| chr6_1 | CDS | 5350027 | 5350084 | 5350027 | ID=Msa0870750-mRNA-1:cds;Parent=Msa0870750-mRNA-1 |
| chr6_1 | CDS | 5349767 | 5349942 | 5349767 | ID=Msa0870750-mRNA-1:cds;Parent=Msa0870750-mRNA-1 |
| chr6_1 | CDS | 5349585 | 5349645 | 5349585 | ID=Msa0870750-mRNA-1:cds;Parent=Msa0870750-mRNA-1 |
| chr6_1 | CDS | 5348638 | 5348951 | 5348638 | ID=Msa0870750-mRNA-1:cds;Parent=Msa0870750-mRNA-1 |
| chr6_1 | three_prime_UTR | 5348449 | 5348637 | 5348449 | ID=Msa0870750-mRNA-1:three_prime_utr;Parent=Msa0870750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
