Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377820 | XP_013461492.1 | 99.729 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377820 | sp|Q9ZVH8|RDO2_ARATH | 53.368 | 386 | 149 | 11 | 6 | 369 | 2 | 378 | 3.18e-117 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377820 | A0A072V117 | 99.729 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 0.0 | 757 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0377820 | TR | IWS1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000910 | Msa0377820 | 0.811544 | 6.640419e-51 | -8.615850e-47 |
| Msa0017730 | Msa0377820 | 0.863540 | 2.313944e-64 | -8.615850e-47 |
| Msa0024400 | Msa0377820 | 0.825933 | 3.577338e-54 | -8.615850e-47 |
| Msa0024930 | Msa0377820 | 0.816047 | 6.761317e-52 | -8.615850e-47 |
| Msa0029630 | Msa0377820 | 0.858634 | 7.202813e-63 | -8.615850e-47 |
| Msa0072420 | Msa0377820 | 0.807886 | 4.059662e-50 | -8.615850e-47 |
| Msa0079920 | Msa0377820 | 0.833899 | 4.090119e-56 | -8.615850e-47 |
| Msa0091730 | Msa0377820 | 0.823444 | 1.380418e-53 | -8.615850e-47 |
| Msa0098240 | Msa0377820 | 0.821315 | 4.311293e-53 | -8.615850e-47 |
| Msa0120280 | Msa0377820 | 0.801045 | 1.083654e-48 | -8.615850e-47 |
| Msa0120880 | Msa0377820 | 0.831740 | 1.406443e-55 | -8.615850e-47 |
| Msa0122530 | Msa0377820 | 0.839752 | 1.313193e-57 | -8.615850e-47 |
| Msa0125450 | Msa0377820 | 0.856416 | 3.266204e-62 | -8.615850e-47 |
| Msa0125540 | Msa0377820 | 0.835201 | 1.925619e-56 | -8.615850e-47 |
| Msa0131590 | Msa0377820 | 0.810704 | 1.009963e-50 | -8.615850e-47 |
| Msa0136120 | Msa0377820 | 0.803706 | 3.067083e-49 | -8.615850e-47 |
| Msa0145960 | Msa0377820 | 0.811148 | 8.091703e-51 | -8.615850e-47 |
| Msa0149440 | Msa0377820 | 0.844239 | 8.549684e-59 | -8.615850e-47 |
| Msa0163510 | Msa0377820 | 0.833808 | 4.310045e-56 | -8.615850e-47 |
| Msa0169610 | Msa0377820 | 0.802263 | 6.096272e-49 | -8.615850e-47 |
| Msa0172980 | Msa0377820 | 0.820205 | 7.756917e-53 | -8.615850e-47 |
| Msa0177960 | Msa0377820 | 0.844353 | 7.970731e-59 | -8.615850e-47 |
| Msa0190870 | Msa0377820 | 0.862077 | 6.541946e-64 | -8.615850e-47 |
| Msa0194920 | Msa0377820 | 0.815974 | 7.020048e-52 | -8.615850e-47 |
| Msa0202490 | Msa0377820 | 0.839976 | 1.147972e-57 | -8.615850e-47 |
| Msa0204960 | Msa0377820 | 0.816215 | 6.203061e-52 | -8.615850e-47 |
| Msa0215990 | Msa0377820 | 0.893219 | 7.702109e-75 | -8.615850e-47 |
| Msa0217670 | Msa0377820 | 0.863364 | 2.624279e-64 | -8.615850e-47 |
| Msa0220990 | Msa0377820 | 0.821376 | 4.173331e-53 | -8.615850e-47 |
| Msa0230820 | Msa0377820 | 0.801307 | 9.578559e-49 | -8.615850e-47 |
| Msa0232790 | Msa0377820 | 0.804175 | 2.451028e-49 | -8.615850e-47 |
| Msa0236620 | Msa0377820 | 0.805704 | 1.173911e-49 | -8.615850e-47 |
| Msa0237300 | Msa0377820 | 0.826131 | 3.210441e-54 | -8.615850e-47 |
| Msa0377820 | Msa0385500 | 0.861921 | 7.304078e-64 | -8.615850e-47 |
| Msa0377820 | Msa0426580 | 0.924187 | 9.846034e-90 | -8.615850e-47 |
| Msa0377820 | Msa0437020 | 0.810565 | 1.082060e-50 | -8.615850e-47 |
| Msa0377820 | Msa0439960 | 0.844696 | 6.441370e-59 | -8.615850e-47 |
| Msa0377820 | Msa0456430 | 0.850610 | 1.519727e-60 | -8.615850e-47 |
| Msa0377820 | Msa0462600 | 0.876537 | 1.290918e-68 | -8.615850e-47 |
| Msa0377820 | Msa0466350 | 0.817046 | 4.039425e-52 | -8.615850e-47 |
| Msa0377820 | Msa0472930 | 0.991729 | 3.205171e-189 | -8.615850e-47 |
| Msa0377820 | Msa0491000 | 0.807461 | 4.999310e-50 | -8.615850e-47 |
| Msa0377820 | Msa0517590 | 0.916800 | 1.150855e-85 | -8.615850e-47 |
| Msa0377820 | Msa0527540 | 0.823964 | 1.042802e-53 | -8.615850e-47 |
| Msa0377820 | Msa0531250 | 0.802540 | 5.345438e-49 | -8.615850e-47 |
| Msa0377820 | Msa0542560 | 0.805816 | 1.112183e-49 | -8.615850e-47 |
| Msa0377820 | Msa0549450 | 0.850138 | 2.060397e-60 | -8.615850e-47 |
| Msa0377820 | Msa0549950 | 0.819359 | 1.210346e-52 | -8.615850e-47 |
| Msa0377820 | Msa0566940 | -0.801901 | 7.234242e-49 | -8.615850e-47 |
| Msa0377820 | Msa0577770 | 0.811073 | 8.402729e-51 | -8.615850e-47 |
| Msa0377820 | Msa0595170 | 0.802627 | 5.129305e-49 | -8.615850e-47 |
| Msa0377820 | Msa0603090 | 0.804845 | 1.776763e-49 | -8.615850e-47 |
| Msa0377820 | Msa0610550 | 0.861733 | 8.336719e-64 | -8.615850e-47 |
| Msa0377820 | Msa0622790 | 0.849024 | 4.216400e-60 | -8.615850e-47 |
| Msa0377820 | Msa0628420 | 0.806260 | 8.966894e-50 | -8.615850e-47 |
| Msa0377820 | Msa0646020 | 0.819472 | 1.140626e-52 | -8.615850e-47 |
| Msa0377820 | Msa0646420 | 0.823643 | 1.240141e-53 | -8.615850e-47 |
| Msa0377820 | Msa0651560 | 0.813736 | 2.200489e-51 | -8.615850e-47 |
| Msa0377820 | Msa0662220 | 0.832786 | 7.749015e-56 | -8.615850e-47 |
| Msa0377820 | Msa0677530 | 0.801852 | 7.403374e-49 | -8.615850e-47 |
| Msa0377820 | Msa0689440 | 0.840783 | 7.061337e-58 | -8.615850e-47 |
| Msa0377820 | Msa0690310 | 0.812919 | 3.327120e-51 | -8.615850e-47 |
| Msa0377820 | Msa0690770 | 0.808308 | 3.301026e-50 | -8.615850e-47 |
| Msa0377820 | Msa0693210 | 0.845593 | 3.686545e-59 | -8.615850e-47 |
| Msa0377820 | Msa0752700 | 0.840861 | 6.736146e-58 | -8.615850e-47 |
| Msa0377820 | Msa0766080 | 0.813511 | 2.466770e-51 | -8.615850e-47 |
| Msa0377820 | Msa0794970 | 0.839350 | 1.670165e-57 | -8.615850e-47 |
| Msa0377820 | Msa0803780 | 0.812289 | 4.570489e-51 | -8.615850e-47 |
| Msa0377820 | Msa0808800 | 0.801818 | 7.524268e-49 | -8.615850e-47 |
| Msa0377820 | Msa0828590 | 0.863878 | 1.817648e-64 | -8.615850e-47 |
| Msa0377820 | Msa0831100 | 0.840849 | 6.787576e-58 | -8.615850e-47 |
| Msa0377820 | Msa0838370 | 0.805435 | 1.336613e-49 | -8.615850e-47 |
| Msa0377820 | Msa0870750 | 0.817179 | 3.770477e-52 | -8.615850e-47 |
| Msa0377820 | Msa0910960 | 0.829346 | 5.419038e-55 | -8.615850e-47 |
| Msa0377820 | Msa0936480 | 0.838568 | 2.661936e-57 | -8.615850e-47 |
| Msa0377820 | Msa0958000 | 0.843921 | 1.040935e-58 | -8.615850e-47 |
| Msa0377820 | Msa0959520 | 0.814671 | 1.368213e-51 | -8.615850e-47 |
| Msa0377820 | Msa0973420 | 0.812400 | 4.321094e-51 | -8.615850e-47 |
| Msa0377820 | Msa0980540 | 0.820798 | 5.669398e-53 | -8.615850e-47 |
| Msa0377820 | Msa0992510 | 0.809090 | 2.246553e-50 | -8.615850e-47 |
| Msa0377820 | Msa0995370 | 0.819730 | 9.961106e-53 | -8.615850e-47 |
| Msa0377820 | Msa1037510 | 0.809215 | 2.112521e-50 | -8.615850e-47 |
| Msa0377820 | Msa1039810 | 0.800749 | 1.245346e-48 | -8.615850e-47 |
| Msa0377820 | Msa1071050 | 0.800342 | 1.507343e-48 | -8.615850e-47 |
| Msa0377820 | Msa1118860 | 0.824137 | 9.499637e-54 | -8.615850e-47 |
| Msa0377820 | Msa1123350 | 0.831590 | 1.531009e-55 | -8.615850e-47 |
| Msa0377820 | Msa1127590 | 0.821636 | 3.634507e-53 | -8.615850e-47 |
| Msa0377820 | Msa1128280 | 0.820265 | 7.513404e-53 | -8.615850e-47 |
| Msa0377820 | Msa1130980 | 0.821968 | 3.045053e-53 | -8.615850e-47 |
| Msa0377820 | Msa1165270 | 0.827905 | 1.208165e-54 | -8.615850e-47 |
| Msa0377820 | Msa1165780 | 0.801314 | 9.544499e-49 | -8.615850e-47 |
| Msa0377820 | Msa1175350 | 0.859339 | 4.429683e-63 | -8.615850e-47 |
| Msa0377820 | Msa1191930 | 0.809365 | 1.961835e-50 | -8.615850e-47 |
| Msa0377820 | Msa1192140 | -0.805086 | 1.581508e-49 | -8.615850e-47 |
| Msa0377820 | Msa1197600 | 0.844756 | 6.209079e-59 | -8.615850e-47 |
| Msa0377820 | Msa1205890 | 0.819018 | 1.447843e-52 | -8.615850e-47 |
| Msa0377820 | Msa1213040 | 0.809967 | 1.456397e-50 | -8.615850e-47 |
| Msa0377820 | Msa1228040 | 0.864623 | 1.063936e-64 | -8.615850e-47 |
| Msa0377820 | Msa1235610 | 0.801926 | 7.148556e-49 | -8.615850e-47 |
| Msa0377820 | Msa1258030 | -0.828219 | 1.015344e-54 | -8.615850e-47 |
| Msa0377820 | Msa1260220 | 0.865404 | 6.051035e-65 | -8.615850e-47 |
| Msa0377820 | Msa1267830 | 0.871579 | 6.135452e-67 | -8.615850e-47 |
| Msa0377820 | Msa1277260 | 0.821713 | 3.488854e-53 | -8.615850e-47 |
| Msa0377820 | Msa1292020 | 0.816168 | 6.353623e-52 | -8.615850e-47 |
| Msa0377820 | Msa1315890 | 0.846827 | 1.700200e-59 | -8.615850e-47 |
| Msa0377820 | Msa1327640 | 0.833380 | 5.513130e-56 | -8.615850e-47 |
| Msa0377820 | Msa1334750 | 0.845745 | 3.351805e-59 | -8.615850e-47 |
| Msa0377820 | Msa1340480 | 0.809293 | 2.032580e-50 | -8.615850e-47 |
| Msa0377820 | Msa1341060 | 0.802385 | 5.753180e-49 | -8.615850e-47 |
| Msa0377820 | Msa1373850 | 0.814451 | 1.530840e-51 | -8.615850e-47 |
| Msa0377820 | Msa1392980 | 0.827993 | 1.150570e-54 | -8.615850e-47 |
| Msa0377820 | Msa1407370 | 0.804515 | 2.082122e-49 | -8.615850e-47 |
| Msa0377820 | Msa1411950 | 0.810139 | 1.336941e-50 | -8.615850e-47 |
| Msa0377820 | Msa1411970 | 0.825439 | 4.684245e-54 | -8.615850e-47 |
| Msa0377820 | Msa1413260 | 0.810942 | 8.970064e-51 | -8.615850e-47 |
| Msa0377820 | Msa1414820 | 0.819506 | 1.120677e-52 | -8.615850e-47 |
| Msa0377820 | Msa1418340 | 0.819830 | 9.453077e-53 | -8.615850e-47 |
| Msa0377820 | Msa1433700 | 0.809859 | 1.536710e-50 | -8.615850e-47 |
| Msa0377820 | Msa1434090 | 0.804909 | 1.722689e-49 | -8.615850e-47 |
| Msa0377820 | Msa1443180 | 0.825020 | 5.885840e-54 | -8.615850e-47 |
| Msa0377820 | Msa1458290 | 0.813767 | 2.167017e-51 | -8.615850e-47 |
| Msa0244980 | Msa0377820 | 0.819799 | 9.604645e-53 | -8.615850e-47 |
| Msa0245580 | Msa0377820 | 0.841715 | 4.015859e-58 | -8.615850e-47 |
| Msa0256140 | Msa0377820 | 0.871202 | 8.180786e-67 | -8.615850e-47 |
| Msa0257490 | Msa0377820 | 0.833565 | 4.956898e-56 | -8.615850e-47 |
| Msa0261010 | Msa0377820 | 0.815715 | 8.020583e-52 | -8.615850e-47 |
| Msa0274720 | Msa0377820 | 0.827463 | 1.542811e-54 | -8.615850e-47 |
| Msa0281530 | Msa0377820 | 0.838151 | 3.409676e-57 | -8.615850e-47 |
| Msa0284180 | Msa0377820 | 0.844254 | 8.470153e-59 | -8.615850e-47 |
| Msa0295250 | Msa0377820 | 0.826643 | 2.423589e-54 | -8.615850e-47 |
| Msa0296250 | Msa0377820 | 0.814322 | 1.634291e-51 | -8.615850e-47 |
| Msa0296630 | Msa0377820 | -0.847369 | 1.208039e-59 | -8.615850e-47 |
| Msa0296790 | Msa0377820 | 0.842316 | 2.785737e-58 | -8.615850e-47 |
| Msa0305310 | Msa0377820 | 0.805896 | 1.069576e-49 | -8.615850e-47 |
| Msa0307380 | Msa0377820 | 0.818651 | 1.753583e-52 | -8.615850e-47 |
| Msa0315520 | Msa0377820 | 0.835176 | 1.954011e-56 | -8.615850e-47 |
| Msa0319640 | Msa0377820 | 0.819328 | 1.230172e-52 | -8.615850e-47 |
| Msa0320590 | Msa0377820 | 0.840854 | 6.766958e-58 | -8.615850e-47 |
| Msa0332640 | Msa0377820 | 0.806751 | 7.063524e-50 | -8.615850e-47 |
| Msa0336450 | Msa0377820 | 0.858821 | 6.330507e-63 | -8.615850e-47 |
| Msa0336540 | Msa0377820 | 0.871692 | 5.632515e-67 | -8.615850e-47 |
| Msa0343500 | Msa0377820 | 0.830501 | 2.834309e-55 | -8.615850e-47 |
| Msa0348830 | Msa0377820 | 0.801733 | 7.835097e-49 | -8.615850e-47 |
| Msa0363060 | Msa0377820 | 0.805025 | 1.629224e-49 | -8.615850e-47 |
| Msa0363640 | Msa0377820 | 0.806735 | 7.120004e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377820 | MtrunA17_Chr3g0128651 | 99.729 | 369 | 1 | 0 | 1 | 369 | 1 | 369 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377820 | AT2G38560.1 | 53.368 | 386 | 149 | 11 | 6 | 369 | 2 | 378 | 3.24e-118 | 347 |
| Msa0377820 | AT2G42725.1 | 48.031 | 127 | 65 | 1 | 189 | 314 | 104 | 230 | 7.49e-32 | 120 |
| Msa0377820 | AT4G18720.1 | 51.724 | 116 | 55 | 1 | 184 | 298 | 100 | 215 | 1.12e-29 | 115 |
| Msa0377820 | AT5G42325.1 | 40.625 | 128 | 58 | 3 | 189 | 314 | 104 | 215 | 2.79e-19 | 86.3 |
Find 104 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGAGTTTGCATTTGGTAAT+AGG | 0.248412 | 3_1:-78493167 | None:intergenic |
| GTCCTTAATGTTTAATCTTA+AGG | 0.250681 | 3_1:+78492928 | Msa0377820:CDS |
| ATTCAGCGCGAGACAAAATA+AGG | 0.257557 | 3_1:+78492744 | Msa0377820:CDS |
| ATCCTTAAGATTAAACATTA+AGG | 0.282366 | 3_1:-78492930 | None:intergenic |
| ATCAGAAGAACCCTGATTTC+CGG | 0.285749 | 3_1:+78492951 | Msa0377820:CDS |
| TTCTGCGGCTGCGGTGTTAT+TGG | 0.299142 | 3_1:-78490422 | None:intergenic |
| AGGACCTATACTTGACCTTT+TGG | 0.308451 | 3_1:-78492910 | None:intergenic |
| AGTCCGTATTATTTGAAAAC+TGG | 0.312826 | 3_1:+78492870 | Msa0377820:CDS |
| CTGTTGACTTAATTGCGATA+TGG | 0.314443 | 3_1:+78492378 | Msa0377820:CDS |
| GCCAAGGTGGAGAAAGTTAA+TGG | 0.315639 | 3_1:+78492539 | Msa0377820:CDS |
| CCGCAGCCGCAGAACACAAC+AGG | 0.331302 | 3_1:+78490431 | Msa0377820:five_prime_UTR |
| AATTGATCAGTAGTAGCTTT+TGG | 0.339749 | 3_1:-78493112 | None:intergenic |
| GAGGCAACGGGTTTCTTCGC+TGG | 0.347716 | 3_1:-78490668 | None:intergenic |
| ACTGTCACTGCCACACGAAT+AGG | 0.349730 | 3_1:-78492845 | None:intergenic |
| TCAACTAATGCTCTTGCATT+TGG | 0.360782 | 3_1:-78493588 | None:intergenic |
| GTTACATTTAGAAATTGTTT+AGG | 0.370539 | 3_1:+78493384 | Msa0377820:three_prime_UTR |
| CAGCACTGCGAGTTTGCATT+TGG | 0.373188 | 3_1:-78493174 | None:intergenic |
| AGCATCCCAGGGAGAACATT+CGG | 0.381324 | 3_1:+78492348 | Msa0377820:CDS |
| CTCCTTCGCTTTGATGTTCG+AGG | 0.381420 | 3_1:-78492639 | None:intergenic |
| CGTCATGAGCTCAGCAGAAA+TGG | 0.387279 | 3_1:+78493015 | Msa0377820:CDS |
| GAACGGGGCCTCTGATTCTA+AGG | 0.389336 | 3_1:+78492436 | Msa0377820:CDS |
| ATCATAGTCTTCAGCTTTGG+TGG | 0.390447 | 3_1:-78492710 | None:intergenic |
| CTTTGGTGGAGCAGCAGCGC+TGG | 0.398518 | 3_1:-78492696 | None:intergenic |
| GAAAACTGGGGTCCTTCAAA+TGG | 0.424609 | 3_1:+78492884 | Msa0377820:CDS |
| CCTGTTGTGTTCTGCGGCTG+CGG | 0.429550 | 3_1:-78490431 | None:intergenic |
| TTGATCATAGTCTTCAGCTT+TGG | 0.429713 | 3_1:-78492713 | None:intergenic |
| TACTGTTGAGCCACAGCGGC+TGG | 0.438165 | 3_1:+78492991 | Msa0377820:CDS |
| TTCAAGCGCATCGAGGCAAC+GGG | 0.440343 | 3_1:-78490680 | None:intergenic |
| GCATCCCAGGGAGAACATTC+GGG | 0.444394 | 3_1:+78492349 | Msa0377820:CDS |
| CTCATGACGGCCAGCCGCTG+TGG | 0.450612 | 3_1:-78493001 | None:intergenic |
| CTGTCACTGCCACACGAATA+GGG | 0.453244 | 3_1:-78492844 | None:intergenic |
| TTTGTTAGTACTGTGGTGAT+TGG | 0.458548 | 3_1:+78493251 | Msa0377820:exon |
| AGGCAACGGGTTTCTTCGCT+GGG | 0.460026 | 3_1:-78490667 | None:intergenic |
| TTCGTGTAACAGAGAGTGGT+TGG | 0.462260 | 3_1:+78490552 | Msa0377820:intron |
| GAGAAACGAAACAAAAGAAA+AGG | 0.464521 | 3_1:-78490392 | None:intergenic |
| TCCTTCAAATGGAGCCCAAA+AGG | 0.467781 | 3_1:+78492895 | Msa0377820:CDS |
| AAACTCTCACCAAGCATCCC+AGG | 0.468100 | 3_1:+78492336 | Msa0377820:CDS |
| CAGAGAGTGGTTGGGTTCGA+TGG | 0.468288 | 3_1:+78490561 | Msa0377820:intron |
| GTGGTTGGGTTCGATGGAGA+AGG | 0.470982 | 3_1:+78490567 | Msa0377820:exon |
| GGTTCATCAAAGCTGAGCTC+TGG | 0.479292 | 3_1:+78492566 | Msa0377820:CDS |
| TTCTTCGCTGGGACTATCAT+CGG | 0.481323 | 3_1:-78490656 | None:intergenic |
| AATGTTCTCCCTGGGATGCT+TGG | 0.486291 | 3_1:-78492345 | None:intergenic |
| CAAGTGACATAGGTTGTCAT+AGG | 0.486857 | 3_1:-78493202 | None:intergenic |
| CCCATTAACTTTCTCCACCT+TGG | 0.490756 | 3_1:-78492540 | None:intergenic |
| CCTTTCTCAACCTTCACTGA+AGG | 0.497037 | 3_1:-78492509 | None:intergenic |
| ATGGAAAGACGTAATTATCA+AGG | 0.497212 | 3_1:+78492397 | Msa0377820:CDS |
| GTCCGTATTATTTGAAAACT+GGG | 0.498242 | 3_1:+78492871 | Msa0377820:CDS |
| GTTCAAGCGCATCGAGGCAA+CGG | 0.502578 | 3_1:-78490681 | None:intergenic |
| TCGTGTAACAGAGAGTGGTT+GGG | 0.509152 | 3_1:+78490553 | Msa0377820:intron |
| CCAAGGTGGAGAAAGTTAAT+GGG | 0.509185 | 3_1:+78492540 | Msa0377820:CDS |
| GGGACTATCATCGGTGGAGG+TGG | 0.510748 | 3_1:-78490647 | None:intergenic |
| AAAAGCCCGAATGTTCTCCC+TGG | 0.523075 | 3_1:-78492354 | None:intergenic |
| GCAGTTAACACAAGTGACAT+AGG | 0.530050 | 3_1:-78493212 | None:intergenic |
| CTAAGGTTGAGTCAACGAAT+GGG | 0.530166 | 3_1:+78492453 | Msa0377820:CDS |
| CCTTCAGTGAAGGTTGAGAA+AGG | 0.536034 | 3_1:+78492509 | Msa0377820:CDS |
| AAACAAAAGAAAAGGAGAGA+AGG | 0.536453 | 3_1:-78490384 | None:intergenic |
| GAAGGAGAAAGAGAAAGAGT+TGG | 0.537798 | 3_1:+78490585 | Msa0377820:CDS |
| AGCATCCGCCGCTTTCTTCG+CGG | 0.541475 | 3_1:-78490623 | None:intergenic |
| AGAGGCAGATGAAGATATGA+TGG | 0.547455 | 3_1:+78492802 | Msa0377820:CDS |
| AGAGTGGAAACTCACGAGAA+TGG | 0.556512 | 3_1:-78490456 | None:intergenic |
| GTGGAGAAAGTTAATGGGAA+TGG | 0.557971 | 3_1:+78492545 | Msa0377820:CDS |
| TCTCCGAGATGCTTTAGCTA+AGG | 0.559780 | 3_1:+78492772 | Msa0377820:CDS |
| TTCAGCGCGAGACAAAATAA+GGG | 0.562584 | 3_1:+78492745 | Msa0377820:CDS |
| GCTGAGCTCTGGAAATGTAA+AGG | 0.564072 | 3_1:+78492577 | Msa0377820:CDS |
| GCAAAAGAGTCCTTCAGTGA+AGG | 0.568044 | 3_1:+78492499 | Msa0377820:CDS |
| TCTAAGGTTGAGTCAACGAA+TGG | 0.570762 | 3_1:+78492452 | Msa0377820:CDS |
| AGTTTGCATTTGGTAATAGG+TGG | 0.578245 | 3_1:-78493164 | None:intergenic |
| AAAGCCCGAATGTTCTCCCT+GGG | 0.578463 | 3_1:-78492353 | None:intergenic |
| CTGATCAATTTAAGTGTGGT+CGG | 0.587454 | 3_1:+78493125 | Msa0377820:CDS |
| TATTCGTGTGGCAGTGACAG+TGG | 0.587816 | 3_1:+78492847 | Msa0377820:CDS |
| GCTTTGTTCGACTGTGAGCG+TGG | 0.588912 | 3_1:+78493082 | Msa0377820:CDS |
| CAGAAATGGCTAGTGAGCAA+AGG | 0.590372 | 3_1:+78493029 | Msa0377820:CDS |
| AGACCTTAGCTAAAGCATCT+CGG | 0.591289 | 3_1:-78492775 | None:intergenic |
| AATGGGGAGAGAGCTAAAGC+TGG | 0.591506 | 3_1:+78492470 | Msa0377820:CDS |
| GTGTTAACTGCAACAACCGT+TGG | 0.591905 | 3_1:+78493224 | Msa0377820:CDS |
| AAATGTAAAGGCACAAAATG+TGG | 0.596450 | 3_1:+78492589 | Msa0377820:CDS |
| TTCGCTGGGACTATCATCGG+TGG | 0.598548 | 3_1:-78490653 | None:intergenic |
| GAGCCCAAAAGGTCAAGTAT+AGG | 0.599758 | 3_1:+78492906 | Msa0377820:CDS |
| AACTCTCACCAAGCATCCCA+GGG | 0.605206 | 3_1:+78492337 | Msa0377820:CDS |
| CAAAATTCTCGTCAATACCC+AGG | 0.608507 | 3_1:+78490729 | Msa0377820:CDS |
| GAAAGGAGAAAGTGCCAAGG+TGG | 0.613295 | 3_1:+78492526 | Msa0377820:CDS |
| GCTGGGACTATCATCGGTGG+AGG | 0.613512 | 3_1:-78490650 | None:intergenic |
| ATGGGGAGAGAGCTAAAGCT+GGG | 0.620446 | 3_1:+78492471 | Msa0377820:CDS |
| AGTGTGGTCGGTGTGGACAA+AGG | 0.621667 | 3_1:+78493137 | Msa0377820:CDS |
| TTTAGCTAAGGTCTTTGAAG+AGG | 0.626494 | 3_1:+78492784 | Msa0377820:CDS |
| TGACTCAACCTTAGAATCAG+AGG | 0.626857 | 3_1:-78492444 | None:intergenic |
| CAATTTAAGTGTGGTCGGTG+TGG | 0.627337 | 3_1:+78493130 | Msa0377820:CDS |
| TACCTCGAACATCAAAGCGA+AGG | 0.634021 | 3_1:+78492637 | Msa0377820:CDS |
| CTCGAACATCAAAGCGAAGG+AGG | 0.641252 | 3_1:+78492640 | Msa0377820:CDS |
| ACTACTGATCAATTTAAGTG+TGG | 0.648979 | 3_1:+78493121 | Msa0377820:CDS |
| GTACGAAGCCGCGAAGAAAG+CGG | 0.650598 | 3_1:+78490615 | Msa0377820:CDS |
| TGAGAAAGGAGAAAGTGCCA+AGG | 0.657225 | 3_1:+78492523 | Msa0377820:CDS |
| AGTACTAACAAAACTTCCAA+CGG | 0.659265 | 3_1:-78493240 | None:intergenic |
| TAAGGTTGAGTCAACGAATG+GGG | 0.661593 | 3_1:+78492454 | Msa0377820:CDS |
| ATGGTGCCTGTTGTGTTCTG+CGG | 0.677677 | 3_1:-78490437 | None:intergenic |
| CATTTCTGCTGAGCTCATGA+CGG | 0.685355 | 3_1:-78493014 | None:intergenic |
| CGAAGCCGCGAAGAAAGCGG+CGG | 0.685814 | 3_1:+78490618 | Msa0377820:CDS |
| TCCGTATTATTTGAAAACTG+GGG | 0.694223 | 3_1:+78492872 | Msa0377820:CDS |
| TGCATGTGACCCTATTCGTG+TGG | 0.704457 | 3_1:+78492835 | Msa0377820:CDS |
| ATTCTGGTGCTACAGTAGAG+CGG | 0.706279 | 3_1:-78493346 | None:intergenic |
| GGTGCTACAGTAGAGCGGTG+TGG | 0.717337 | 3_1:-78493341 | None:intergenic |
| ATGAACGTGTGATGTCATTG+CGG | 0.738608 | 3_1:+78493316 | Msa0377820:three_prime_UTR |
| TGAGCTGTTCAAGCGCATCG+AGG | 0.741948 | 3_1:-78490687 | None:intergenic |
| TTGGTACTGTTGAGCCACAG+CGG | 0.773544 | 3_1:+78492987 | Msa0377820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAATACAAGATTT+CGG | - | chr3_1:78491359-78491378 | None:intergenic | 10.0% |
| !! | AAAAATATTGCTATGAAATA+TGG | - | chr3_1:78491745-78491764 | None:intergenic | 15.0% |
| !!! | TGTTTTTAACGTTTTTTGTA+TGG | + | chr3_1:78490527-78490546 | Msa0377820:intron | 20.0% |
| !! | GAATAGAAAAATAATAACCT+GGG | - | chr3_1:78490749-78490768 | None:intergenic | 20.0% |
| !! | TGAATAGAAAAATAATAACC+TGG | - | chr3_1:78490750-78490769 | None:intergenic | 20.0% |
| !! | GAGTTATAGATTTGTAAATT+TGG | + | chr3_1:78490980-78490999 | Msa0377820:intron | 20.0% |
| !!! | TCAATTTTAGGTTTTGTTTT+TGG | + | chr3_1:78491017-78491036 | Msa0377820:intron | 20.0% |
| !!! | GTTTTGTTTTTGGTTAAATT+GGG | + | chr3_1:78491027-78491046 | Msa0377820:intron | 20.0% |
| !! | AAATCAGAAAAAACTATAAC+GGG | - | chr3_1:78491591-78491610 | None:intergenic | 20.0% |
| !! | CAAATCAGAAAAAACTATAA+CGG | - | chr3_1:78491592-78491611 | None:intergenic | 20.0% |
| !!! | TTTCTGATTTGAATAGATTT+TGG | + | chr3_1:78491601-78491620 | Msa0377820:intron | 20.0% |
| !! | TTTGTTTAGAAATATCTGTA+GGG | - | chr3_1:78491706-78491725 | None:intergenic | 20.0% |
| !! | ATTTGTTTAGAAATATCTGT+AGG | - | chr3_1:78491707-78491726 | None:intergenic | 20.0% |
| !! | AATACTAGTTCATAGTTTAT+TGG | + | chr3_1:78491795-78491814 | Msa0377820:intron | 20.0% |
| !! | AACAAACTATTTATTAAGCA+AGG | - | chr3_1:78491966-78491985 | None:intergenic | 20.0% |
| !! | ATAGAAAAAACTGTAGTATT+TGG | + | chr3_1:78492164-78492183 | Msa0377820:intron | 20.0% |
| !! | AAAAGAAATAGAGATAGTTA+AGG | + | chr3_1:78492196-78492215 | Msa0377820:intron | 20.0% |
| !! | AAAGAAATAGAGATAGTTAA+GGG | + | chr3_1:78492197-78492216 | Msa0377820:intron | 20.0% |
| !!! | TCAAATCTTTACTTTTTTCA+TGG | + | chr3_1:78492235-78492254 | Msa0377820:intron | 20.0% |
| !! | GAAACAAGTAAAAATAAGAA+CGG | + | chr3_1:78492419-78492438 | Msa0377820:CDS | 20.0% |
| !! | AAACAAGTAAAAATAAGAAC+GGG | + | chr3_1:78492420-78492439 | Msa0377820:CDS | 20.0% |
| !! | ATCCTTAAGATTAAACATTA+AGG | - | chr3_1:78492933-78492952 | None:intergenic | 20.0% |
| !! | GTTACATTTAGAAATTGTTT+AGG | + | chr3_1:78493384-78493403 | Msa0377820:three_prime_UTR | 20.0% |
| !! | TCTATTCACATTGCAAATTT+TGG | + | chr3_1:78490762-78490781 | Msa0377820:intron | 25.0% |
| !! | TTTTGCATGTTATAGTTGTT+AGG | + | chr3_1:78490858-78490877 | Msa0377820:intron | 25.0% |
| ! | TTTGCATGTTATAGTTGTTA+GGG | + | chr3_1:78490859-78490878 | Msa0377820:intron | 25.0% |
| !!! | GGTTTTGTTTTTGGTTAAAT+TGG | + | chr3_1:78491026-78491045 | Msa0377820:intron | 25.0% |
| ! | AATTAAATTAGCACATTGTG+TGG | + | chr3_1:78491073-78491092 | Msa0377820:intron | 25.0% |
| ! | CAACTGGCTAATTTAAATTA+CGG | - | chr3_1:78491176-78491195 | None:intergenic | 25.0% |
| !!! | TTTTTAATTCTTTGATGACG+TGG | + | chr3_1:78491373-78491392 | Msa0377820:intron | 25.0% |
| !! | TGTTTGGAACTTATTTAAAC+TGG | + | chr3_1:78491638-78491657 | Msa0377820:intron | 25.0% |
| ! | GAACTTATTTAAACTGGAAT+GGG | + | chr3_1:78491644-78491663 | Msa0377820:intron | 25.0% |
| ! | AACTATGAACTAGTATTTCA+CGG | - | chr3_1:78491792-78491811 | None:intergenic | 25.0% |
| !!! | ACAGTTTTTTCTATCTAGTT+TGG | - | chr3_1:78492158-78492177 | None:intergenic | 25.0% |
| !! | GTAAAGATTTGAGATCAATT+TGG | - | chr3_1:78492227-78492246 | None:intergenic | 25.0% |
| !! | ATTTTCTGATGTAATCTTTC+AGG | + | chr3_1:78492298-78492317 | Msa0377820:intron | 25.0% |
| ! | AACAAGTAAAAATAAGAACG+GGG | + | chr3_1:78492421-78492440 | Msa0377820:CDS | 25.0% |
| ! | GTCCTTAATGTTTAATCTTA+AGG | + | chr3_1:78492928-78492947 | Msa0377820:CDS | 25.0% |
| ! | TAAAACCTGACAAAAAACAT+TGG | - | chr3_1:78493503-78493522 | None:intergenic | 25.0% |
| AAACAAAAGAAAAGGAGAGA+AGG | - | chr3_1:78490387-78490406 | None:intergenic | 30.0% | |
| GAGAAACGAAACAAAAGAAA+AGG | - | chr3_1:78490395-78490414 | None:intergenic | 30.0% | |
| ! | ACGAGAATTTTGTAATTGAC+CGG | - | chr3_1:78490721-78490740 | None:intergenic | 30.0% |
| TTAACATCAACAGAAACTCA+GGG | - | chr3_1:78491054-78491073 | None:intergenic | 30.0% | |
| TTTAACATCAACAGAAACTC+AGG | - | chr3_1:78491055-78491074 | None:intergenic | 30.0% | |
| CACATTGTGTGGATATATAT+GGG | + | chr3_1:78491084-78491103 | Msa0377820:intron | 30.0% | |
| ! | TATTGAACTGTAATTGACTC+TGG | + | chr3_1:78491107-78491126 | Msa0377820:intron | 30.0% |
| ! | ATTGAACTGTAATTGACTCT+GGG | + | chr3_1:78491108-78491127 | Msa0377820:intron | 30.0% |
| !!! | ATAGGTTTTGGATTTTGCAA+AGG | + | chr3_1:78491132-78491151 | Msa0377820:intron | 30.0% |
| ATTTAAATTAGCCAGTTGCA+TGG | + | chr3_1:78491178-78491197 | Msa0377820:intron | 30.0% | |
| TATTGTATCGTAATTGAGTC+CGG | + | chr3_1:78491214-78491233 | Msa0377820:intron | 30.0% | |
| GAAAATCCAAAACATATACC+CGG | - | chr3_1:78491236-78491255 | None:intergenic | 30.0% | |
| !! | GTTTTGGATTTTCCAAAAGA+TGG | + | chr3_1:78491243-78491262 | Msa0377820:intron | 30.0% |
| ! | GATTTTCCAAAAGATGGATA+CGG | + | chr3_1:78491249-78491268 | Msa0377820:intron | 30.0% |
| ! | ATTTTCCAAAAGATGGATAC+GGG | + | chr3_1:78491250-78491269 | Msa0377820:intron | 30.0% |
| TATCATTGTTGTCGTTATCT+TGG | + | chr3_1:78491440-78491459 | Msa0377820:intron | 30.0% | |
| TATCTTGGAATTTATGACCA+AGG | + | chr3_1:78491455-78491474 | Msa0377820:intron | 30.0% | |
| !! | ACCAAGGATATTGTTATTTG+TGG | + | chr3_1:78491471-78491490 | Msa0377820:intron | 30.0% |
| ACCACAAATAACAATATCCT+TGG | - | chr3_1:78491475-78491494 | None:intergenic | 30.0% | |
| AATGAAACCAATCCTAACTT+TGG | - | chr3_1:78491526-78491545 | None:intergenic | 30.0% | |
| GGAAATCAACTCTTAATGTT+TGG | + | chr3_1:78491622-78491641 | Msa0377820:intron | 30.0% | |
| GGAACTTATTTAAACTGGAA+TGG | + | chr3_1:78491643-78491662 | Msa0377820:intron | 30.0% | |
| TATTGCTATGAAATATGGAG+AGG | - | chr3_1:78491740-78491759 | None:intergenic | 30.0% | |
| ACTATGAACTAGTATTTCAC+GGG | - | chr3_1:78491791-78491810 | None:intergenic | 30.0% | |
| ! | ATAGTTTATTGGTCTGATTG+TGG | + | chr3_1:78491806-78491825 | Msa0377820:intron | 30.0% |
| !! | TACCAATTTATCTCTGAAAC+TGG | - | chr3_1:78492098-78492117 | None:intergenic | 30.0% |
| ! | AACTGTAGTATTTGGAATTC+AGG | + | chr3_1:78492172-78492191 | Msa0377820:intron | 30.0% |
| ! | ACTGTAGTATTTGGAATTCA+GGG | + | chr3_1:78492173-78492192 | Msa0377820:intron | 30.0% |
| ATGAAAATCGTAACAAGTAC+AGG | - | chr3_1:78492266-78492285 | None:intergenic | 30.0% | |
| ATGGAAAGACGTAATTATCA+AGG | + | chr3_1:78492397-78492416 | Msa0377820:CDS | 30.0% | |
| ! | AAATGTAAAGGCACAAAATG+TGG | + | chr3_1:78492589-78492608 | Msa0377820:CDS | 30.0% |
| AGTCCGTATTATTTGAAAAC+TGG | + | chr3_1:78492870-78492889 | Msa0377820:CDS | 30.0% | |
| GTCCGTATTATTTGAAAACT+GGG | + | chr3_1:78492871-78492890 | Msa0377820:CDS | 30.0% | |
| TCCGTATTATTTGAAAACTG+GGG | + | chr3_1:78492872-78492891 | Msa0377820:CDS | 30.0% | |
| ! | ACCCCAGTTTTCAAATAATA+CGG | - | chr3_1:78492876-78492895 | None:intergenic | 30.0% |
| ! | AATTGATCAGTAGTAGCTTT+TGG | - | chr3_1:78493115-78493134 | None:intergenic | 30.0% |
| ACTACTGATCAATTTAAGTG+TGG | + | chr3_1:78493121-78493140 | Msa0377820:CDS | 30.0% | |
| AGTACTAACAAAACTTCCAA+CGG | - | chr3_1:78493243-78493262 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTGTCAGGTTTTAC+TGG | + | chr3_1:78493504-78493523 | Msa0377820:three_prime_UTR | 30.0% |
| CAGAGATTTGATATTCAGAG+TGG | - | chr3_1:78490475-78490494 | None:intergenic | 35.0% | |
| ! | TGAACAGCTCAAGAATTTTC+CGG | + | chr3_1:78490699-78490718 | Msa0377820:CDS | 35.0% |
| GTTGTTAGGGTTCAATTCAA+AGG | + | chr3_1:78490872-78490891 | Msa0377820:intron | 35.0% | |
| TTAGGGTTCAATTCAAAGGA+AGG | + | chr3_1:78490876-78490895 | Msa0377820:intron | 35.0% | |
| TAGGGTTCAATTCAAAGGAA+GGG | + | chr3_1:78490877-78490896 | Msa0377820:intron | 35.0% | |
| !! | GAGCTGTGTTGTTCAATTTT+AGG | + | chr3_1:78491005-78491024 | Msa0377820:intron | 35.0% |
| GCACATTGTGTGGATATATA+TGG | + | chr3_1:78491083-78491102 | Msa0377820:intron | 35.0% | |
| !! | GTTTTGGATTTTGCAAAGGA+TGG | + | chr3_1:78491136-78491155 | Msa0377820:intron | 35.0% |
| ! | GATTTTGCAAAGGATGGATA+CGG | + | chr3_1:78491142-78491161 | Msa0377820:intron | 35.0% |
| ! | ATTTTGCAAAGGATGGATAC+GGG | + | chr3_1:78491143-78491162 | Msa0377820:intron | 35.0% |
| ATTGTATCGTAATTGAGTCC+GGG | + | chr3_1:78491215-78491234 | Msa0377820:intron | 35.0% | |
| !!! | GCAGTTCACTTTTTCTTTGT+CGG | + | chr3_1:78491406-78491425 | Msa0377820:intron | 35.0% |
| !!! | CAGTTCACTTTTTCTTTGTC+GGG | + | chr3_1:78491407-78491426 | Msa0377820:intron | 35.0% |
| !!! | AGTTCACTTTTTCTTTGTCG+GGG | + | chr3_1:78491408-78491427 | Msa0377820:intron | 35.0% |
| AAATGACAGCTAGTTGTGTT+TGG | + | chr3_1:78491495-78491514 | Msa0377820:intron | 35.0% | |
| TGTTTGGATTCACCAAAGTT+AGG | + | chr3_1:78491511-78491530 | Msa0377820:intron | 35.0% | |
| ! | GAAAAAACTATAACGGGATC+TGG | - | chr3_1:78491585-78491604 | None:intergenic | 35.0% |
| AAATATGGAGAGGATACGTT+AGG | - | chr3_1:78491730-78491749 | None:intergenic | 35.0% | |
| !!! | TACCGCTTTTTTGGTTTTTG+TGG | + | chr3_1:78491849-78491868 | Msa0377820:intron | 35.0% |
| AGCCACAAAAACCAAAAAAG+CGG | - | chr3_1:78491854-78491873 | None:intergenic | 35.0% | |
| CCATAAGCAAGGTTCATAAA+TGG | - | chr3_1:78491883-78491902 | None:intergenic | 35.0% | |
| CCATTTATGAACCTTGCTTA+TGG | + | chr3_1:78491880-78491899 | Msa0377820:intron | 35.0% | |
| GTGAGTATGCTTGTAAGAAA+AGG | - | chr3_1:78491909-78491928 | None:intergenic | 35.0% | |
| GATTCAGCAACAAGAAATTG+TGG | - | chr3_1:78491936-78491955 | None:intergenic | 35.0% | |
| TGCCAGTTTCAGAGATAAAT+TGG | + | chr3_1:78492093-78492112 | Msa0377820:intron | 35.0% | |
| TTCTGATGTAATCTTTCAGG+TGG | + | chr3_1:78492301-78492320 | Msa0377820:intron | 35.0% | |
| ! | TCTGATGTAATCTTTCAGGT+GGG | + | chr3_1:78492302-78492321 | Msa0377820:intron | 35.0% |
| !! | CTGTTGACTTAATTGCGATA+TGG | + | chr3_1:78492378-78492397 | Msa0377820:CDS | 35.0% |
| TTGATCATAGTCTTCAGCTT+TGG | - | chr3_1:78492716-78492735 | None:intergenic | 35.0% | |
| ! | TTTAGCTAAGGTCTTTGAAG+AGG | + | chr3_1:78492784-78492803 | Msa0377820:CDS | 35.0% |
| ! | AAACTTTTCTCCGGAAATCA+GGG | - | chr3_1:78492964-78492983 | None:intergenic | 35.0% |
| ! | AAAACTTTTCTCCGGAAATC+AGG | - | chr3_1:78492965-78492984 | None:intergenic | 35.0% |
| ! | TACCAAGCAAAACTTTTCTC+CGG | - | chr3_1:78492973-78492992 | None:intergenic | 35.0% |
| CTGATCAATTTAAGTGTGGT+CGG | + | chr3_1:78493125-78493144 | Msa0377820:CDS | 35.0% | |
| ! | AGTTTGCATTTGGTAATAGG+TGG | - | chr3_1:78493167-78493186 | None:intergenic | 35.0% |
| !!! | TGGAAGTTTTGTTAGTACTG+TGG | + | chr3_1:78493244-78493263 | Msa0377820:exon | 35.0% |
| TTTGTTAGTACTGTGGTGAT+TGG | + | chr3_1:78493251-78493270 | Msa0377820:exon | 35.0% | |
| CAGTCTGAACAGAAAAATTC+TGG | - | chr3_1:78493365-78493384 | None:intergenic | 35.0% | |
| !!! | TTGCACCAATGTTTTTTGTC+AGG | + | chr3_1:78493495-78493514 | Msa0377820:three_prime_UTR | 35.0% |
| GAAGGAGAAAGAGAAAGAGT+TGG | + | chr3_1:78490585-78490604 | Msa0377820:CDS | 40.0% | |
| CAAAATTCTCGTCAATACCC+AGG | + | chr3_1:78490729-78490748 | Msa0377820:CDS | 40.0% | |
| ! | CTGTAATTGACTCTGGGTAT+AGG | + | chr3_1:78491114-78491133 | Msa0377820:intron | 40.0% |
| ! | TTGACTCTGGGTATAGGTTT+TGG | + | chr3_1:78491120-78491139 | Msa0377820:intron | 40.0% |
| TATCCTGATATCCATGCAAC+TGG | - | chr3_1:78491192-78491211 | None:intergenic | 40.0% | |
| ! | TTGAGTCCGGGTATATGTTT+TGG | + | chr3_1:78491227-78491246 | Msa0377820:intron | 40.0% |
| !!! | GTTCACTTTTTCTTTGTCGG+GGG | + | chr3_1:78491409-78491428 | Msa0377820:intron | 40.0% |
| !!! | TTCACTTTTTCTTTGTCGGG+GGG | + | chr3_1:78491410-78491429 | Msa0377820:intron | 40.0% |
| GGATTCACCAAAGTTAGGAT+TGG | + | chr3_1:78491516-78491535 | Msa0377820:intron | 40.0% | |
| ACCAAAAAAGCGGTATAGTG+TGG | - | chr3_1:78491844-78491863 | None:intergenic | 40.0% | |
| AGAAAAGGAAGCCATAAGCA+AGG | - | chr3_1:78491894-78491913 | None:intergenic | 40.0% | |
| TGACTCAACCTTAGAATCAG+AGG | - | chr3_1:78492447-78492466 | None:intergenic | 40.0% | |
| ! | TCTAAGGTTGAGTCAACGAA+TGG | + | chr3_1:78492452-78492471 | Msa0377820:CDS | 40.0% |
| CTAAGGTTGAGTCAACGAAT+GGG | + | chr3_1:78492453-78492472 | Msa0377820:CDS | 40.0% | |
| TAAGGTTGAGTCAACGAATG+GGG | + | chr3_1:78492454-78492473 | Msa0377820:CDS | 40.0% | |
| CCAAGGTGGAGAAAGTTAAT+GGG | + | chr3_1:78492540-78492559 | Msa0377820:CDS | 40.0% | |
| GTGGAGAAAGTTAATGGGAA+TGG | + | chr3_1:78492545-78492564 | Msa0377820:CDS | 40.0% | |
| ! | ATTTTCTTTGCCGCAGATAC+TGG | - | chr3_1:78492671-78492690 | None:intergenic | 40.0% |
| ! | ATCATAGTCTTCAGCTTTGG+TGG | - | chr3_1:78492713-78492732 | None:intergenic | 40.0% |
| ATTCAGCGCGAGACAAAATA+AGG | + | chr3_1:78492744-78492763 | Msa0377820:CDS | 40.0% | |
| TTCAGCGCGAGACAAAATAA+GGG | + | chr3_1:78492745-78492764 | Msa0377820:CDS | 40.0% | |
| ! | AGACCTTAGCTAAAGCATCT+CGG | - | chr3_1:78492778-78492797 | None:intergenic | 40.0% |
| AGAGGCAGATGAAGATATGA+TGG | + | chr3_1:78492802-78492821 | Msa0377820:CDS | 40.0% | |
| ! | GGACCTATACTTGACCTTTT+GGG | - | chr3_1:78492912-78492931 | None:intergenic | 40.0% |
| ! | AGGACCTATACTTGACCTTT+TGG | - | chr3_1:78492913-78492932 | None:intergenic | 40.0% |
| ATCAGAAGAACCCTGATTTC+CGG | + | chr3_1:78492951-78492970 | Msa0377820:CDS | 40.0% | |
| ! | TTCCGGAGAAAAGTTTTGCT+TGG | + | chr3_1:78492968-78492987 | Msa0377820:CDS | 40.0% |
| ! | GCGAGTTTGCATTTGGTAAT+AGG | - | chr3_1:78493170-78493189 | None:intergenic | 40.0% |
| CAAGTGACATAGGTTGTCAT+AGG | - | chr3_1:78493205-78493224 | None:intergenic | 40.0% | |
| GCAGTTAACACAAGTGACAT+AGG | - | chr3_1:78493215-78493234 | None:intergenic | 40.0% | |
| ATGAACGTGTGATGTCATTG+CGG | + | chr3_1:78493316-78493335 | Msa0377820:three_prime_UTR | 40.0% | |
| AGAGTGGAAACTCACGAGAA+TGG | - | chr3_1:78490459-78490478 | None:intergenic | 45.0% | |
| ! | GGTTTTCGTGTAACAGAGAG+TGG | + | chr3_1:78490548-78490567 | Msa0377820:intron | 45.0% |
| TTCGTGTAACAGAGAGTGGT+TGG | + | chr3_1:78490552-78490571 | Msa0377820:intron | 45.0% | |
| TCGTGTAACAGAGAGTGGTT+GGG | + | chr3_1:78490553-78490572 | Msa0377820:intron | 45.0% | |
| TTCTTCGCTGGGACTATCAT+CGG | - | chr3_1:78490659-78490678 | None:intergenic | 45.0% | |
| TAGCCAGTTGCATGGATATC+AGG | + | chr3_1:78491186-78491205 | Msa0377820:intron | 45.0% | |
| ! | CCATACCCGTATCCATCTTT+TGG | - | chr3_1:78491258-78491277 | None:intergenic | 45.0% |
| CCAAAAGATGGATACGGGTA+TGG | + | chr3_1:78491255-78491274 | Msa0377820:intron | 45.0% | |
| CCTACACTAACCCTCAGTAA+CGG | - | chr3_1:78491283-78491302 | None:intergenic | 45.0% | |
| !!! | GCCACACTATACCGCTTTTT+TGG | + | chr3_1:78491840-78491859 | Msa0377820:intron | 45.0% |
| GCAAAAGAGTCCTTCAGTGA+AGG | + | chr3_1:78492499-78492518 | Msa0377820:CDS | 45.0% | |
| CCTTTCTCAACCTTCACTGA+AGG | - | chr3_1:78492512-78492531 | None:intergenic | 45.0% | |
| CCTTCAGTGAAGGTTGAGAA+AGG | + | chr3_1:78492509-78492528 | Msa0377820:CDS | 45.0% | |
| !! | TGAGAAAGGAGAAAGTGCCA+AGG | + | chr3_1:78492523-78492542 | Msa0377820:CDS | 45.0% |
| GCCAAGGTGGAGAAAGTTAA+TGG | + | chr3_1:78492539-78492558 | Msa0377820:CDS | 45.0% | |
| CCCATTAACTTTCTCCACCT+TGG | - | chr3_1:78492543-78492562 | None:intergenic | 45.0% | |
| !! | GCTGAGCTCTGGAAATGTAA+AGG | + | chr3_1:78492577-78492596 | Msa0377820:CDS | 45.0% |
| TACCTCGAACATCAAAGCGA+AGG | + | chr3_1:78492637-78492656 | Msa0377820:CDS | 45.0% | |
| GGAGGAAAAACCAGTATCTG+CGG | + | chr3_1:78492658-78492677 | Msa0377820:CDS | 45.0% | |
| TCTCCGAGATGCTTTAGCTA+AGG | + | chr3_1:78492772-78492791 | Msa0377820:CDS | 45.0% | |
| GAAAACTGGGGTCCTTCAAA+TGG | + | chr3_1:78492884-78492903 | Msa0377820:CDS | 45.0% | |
| TCCTTCAAATGGAGCCCAAA+AGG | + | chr3_1:78492895-78492914 | Msa0377820:CDS | 45.0% | |
| ! | ACCTTTTGGGCTCCATTTGA+AGG | - | chr3_1:78492899-78492918 | None:intergenic | 45.0% |
| GAGCCCAAAAGGTCAAGTAT+AGG | + | chr3_1:78492906-78492925 | Msa0377820:CDS | 45.0% | |
| CATTTCTGCTGAGCTCATGA+CGG | - | chr3_1:78493017-78493036 | None:intergenic | 45.0% | |
| CAGAAATGGCTAGTGAGCAA+AGG | + | chr3_1:78493029-78493048 | Msa0377820:CDS | 45.0% | |
| CAATTTAAGTGTGGTCGGTG+TGG | + | chr3_1:78493130-78493149 | Msa0377820:CDS | 45.0% | |
| GTGTTAACTGCAACAACCGT+TGG | + | chr3_1:78493224-78493243 | Msa0377820:CDS | 45.0% | |
| !! | ATTCTGGTGCTACAGTAGAG+CGG | - | chr3_1:78493349-78493368 | None:intergenic | 45.0% |
| ATGGTGCCTGTTGTGTTCTG+CGG | - | chr3_1:78490440-78490459 | None:intergenic | 50.0% | |
| GCAAAGGATGGATACGGGTA+AGG | + | chr3_1:78491148-78491167 | Msa0377820:intron | 50.0% | |
| ! | CCGTTACTGAGGGTTAGTGT+AGG | + | chr3_1:78491280-78491299 | Msa0377820:intron | 50.0% |
| ! | CTGAGGGTTAGTGTAGGTGT+TGG | + | chr3_1:78491286-78491305 | Msa0377820:intron | 50.0% |
| AAACTCTCACCAAGCATCCC+AGG | + | chr3_1:78492336-78492355 | Msa0377820:CDS | 50.0% | |
| AACTCTCACCAAGCATCCCA+GGG | + | chr3_1:78492337-78492356 | Msa0377820:CDS | 50.0% | |
| AATGTTCTCCCTGGGATGCT+TGG | - | chr3_1:78492348-78492367 | None:intergenic | 50.0% | |
| AGCATCCCAGGGAGAACATT+CGG | + | chr3_1:78492348-78492367 | Msa0377820:CDS | 50.0% | |
| AAAGCCCGAATGTTCTCCCT+GGG | - | chr3_1:78492356-78492375 | None:intergenic | 50.0% | |
| AAAAGCCCGAATGTTCTCCC+TGG | - | chr3_1:78492357-78492376 | None:intergenic | 50.0% | |
| AATGGGGAGAGAGCTAAAGC+TGG | + | chr3_1:78492470-78492489 | Msa0377820:CDS | 50.0% | |
| ATGGGGAGAGAGCTAAAGCT+GGG | + | chr3_1:78492471-78492490 | Msa0377820:CDS | 50.0% | |
| !! | GAAAGGAGAAAGTGCCAAGG+TGG | + | chr3_1:78492526-78492545 | Msa0377820:CDS | 50.0% |
| GGTTCATCAAAGCTGAGCTC+TGG | + | chr3_1:78492566-78492585 | Msa0377820:CDS | 50.0% | |
| CTCCTTCGCTTTGATGTTCG+AGG | - | chr3_1:78492642-78492661 | None:intergenic | 50.0% | |
| CTCGAACATCAAAGCGAAGG+AGG | + | chr3_1:78492640-78492659 | Msa0377820:CDS | 50.0% | |
| TGCATGTGACCCTATTCGTG+TGG | + | chr3_1:78492835-78492854 | Msa0377820:CDS | 50.0% | |
| CTGTCACTGCCACACGAATA+GGG | - | chr3_1:78492847-78492866 | None:intergenic | 50.0% | |
| ACTGTCACTGCCACACGAAT+AGG | - | chr3_1:78492848-78492867 | None:intergenic | 50.0% | |
| TATTCGTGTGGCAGTGACAG+TGG | + | chr3_1:78492847-78492866 | Msa0377820:CDS | 50.0% | |
| TTGGTACTGTTGAGCCACAG+CGG | + | chr3_1:78492987-78493006 | Msa0377820:CDS | 50.0% | |
| CGTCATGAGCTCAGCAGAAA+TGG | + | chr3_1:78493015-78493034 | Msa0377820:CDS | 50.0% | |
| CAGCACTGCGAGTTTGCATT+TGG | - | chr3_1:78493177-78493196 | None:intergenic | 50.0% | |
| !! | TTCTGCGGCTGCGGTGTTAT+TGG | - | chr3_1:78490425-78490444 | None:intergenic | 55.0% |
| CAGAGAGTGGTTGGGTTCGA+TGG | + | chr3_1:78490561-78490580 | Msa0377820:intron | 55.0% | |
| GTGGTTGGGTTCGATGGAGA+AGG | + | chr3_1:78490567-78490586 | Msa0377820:exon | 55.0% | |
| GTACGAAGCCGCGAAGAAAG+CGG | + | chr3_1:78490615-78490634 | Msa0377820:CDS | 55.0% | |
| TTCGCTGGGACTATCATCGG+TGG | - | chr3_1:78490656-78490675 | None:intergenic | 55.0% | |
| ! | AGGCAACGGGTTTCTTCGCT+GGG | - | chr3_1:78490670-78490689 | None:intergenic | 55.0% |
| TTCAAGCGCATCGAGGCAAC+GGG | - | chr3_1:78490683-78490702 | None:intergenic | 55.0% | |
| GTTCAAGCGCATCGAGGCAA+CGG | - | chr3_1:78490684-78490703 | None:intergenic | 55.0% | |
| TGAGCTGTTCAAGCGCATCG+AGG | - | chr3_1:78490690-78490709 | None:intergenic | 55.0% | |
| GGGTATGGCACCGTTACTGA+GGG | + | chr3_1:78491270-78491289 | Msa0377820:intron | 55.0% | |
| TTTCTTTGTCGGGGGGCAGA+AGG | + | chr3_1:78491417-78491436 | Msa0377820:intron | 55.0% | |
| GCATCCCAGGGAGAACATTC+GGG | + | chr3_1:78492349-78492368 | Msa0377820:CDS | 55.0% | |
| GAACGGGGCCTCTGATTCTA+AGG | + | chr3_1:78492436-78492455 | Msa0377820:CDS | 55.0% | |
| ! | GCTTTGTTCGACTGTGAGCG+TGG | + | chr3_1:78493082-78493101 | Msa0377820:CDS | 55.0% |
| AGTGTGGTCGGTGTGGACAA+AGG | + | chr3_1:78493137-78493156 | Msa0377820:CDS | 55.0% | |
| CCTGTTGTGTTCTGCGGCTG+CGG | - | chr3_1:78490434-78490453 | None:intergenic | 60.0% | |
| ! | AGCATCCGCCGCTTTCTTCG+CGG | - | chr3_1:78490626-78490645 | None:intergenic | 60.0% |
| GGGACTATCATCGGTGGAGG+TGG | - | chr3_1:78490650-78490669 | None:intergenic | 60.0% | |
| GCTGGGACTATCATCGGTGG+AGG | - | chr3_1:78490653-78490672 | None:intergenic | 60.0% | |
| ! | GAGGCAACGGGTTTCTTCGC+TGG | - | chr3_1:78490671-78490690 | None:intergenic | 60.0% |
| CGGGTATGGCACCGTTACTG+AGG | + | chr3_1:78491269-78491288 | Msa0377820:intron | 60.0% | |
| TACTGTTGAGCCACAGCGGC+TGG | + | chr3_1:78492991-78493010 | Msa0377820:CDS | 60.0% | |
| ! | GGTGCTACAGTAGAGCGGTG+TGG | - | chr3_1:78493344-78493363 | None:intergenic | 60.0% |
| CCGCAGCCGCAGAACACAAC+AGG | + | chr3_1:78490431-78490450 | Msa0377820:five_prime_UTR | 65.0% | |
| CGAAGCCGCGAAGAAAGCGG+CGG | + | chr3_1:78490618-78490637 | Msa0377820:CDS | 65.0% | |
| CTTTGGTGGAGCAGCAGCGC+TGG | - | chr3_1:78492699-78492718 | None:intergenic | 65.0% | |
| CTCATGACGGCCAGCCGCTG+TGG | - | chr3_1:78493004-78493023 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 78490357 | 78493607 | 78490357 | ID=Msa0377820;Name=Msa0377820 |
| chr3_1 | mRNA | 78490357 | 78493607 | 78490357 | ID=Msa0377820-mRNA-1;Parent=Msa0377820;Name=Msa0377820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=123|1|1|1|0.5|0.66|3|349|369 |
| chr3_1 | exon | 78490357 | 78490463 | 78490357 | ID=Msa0377820-mRNA-1:exon:18912;Parent=Msa0377820-mRNA-1 |
| chr3_1 | exon | 78490564 | 78490750 | 78490564 | ID=Msa0377820-mRNA-1:exon:18913;Parent=Msa0377820-mRNA-1 |
| chr3_1 | exon | 78492320 | 78493607 | 78492320 | ID=Msa0377820-mRNA-1:exon:18914;Parent=Msa0377820-mRNA-1 |
| chr3_1 | five_prime_UTR | 78490357 | 78490463 | 78490357 | ID=Msa0377820-mRNA-1:five_prime_utr;Parent=Msa0377820-mRNA-1 |
| chr3_1 | five_prime_UTR | 78490564 | 78490579 | 78490564 | ID=Msa0377820-mRNA-1:five_prime_utr;Parent=Msa0377820-mRNA-1 |
| chr3_1 | CDS | 78490580 | 78490750 | 78490580 | ID=Msa0377820-mRNA-1:cds;Parent=Msa0377820-mRNA-1 |
| chr3_1 | CDS | 78492320 | 78493258 | 78492320 | ID=Msa0377820-mRNA-1:cds;Parent=Msa0377820-mRNA-1 |
| chr3_1 | three_prime_UTR | 78493259 | 78493607 | 78493259 | ID=Msa0377820-mRNA-1:three_prime_utr;Parent=Msa0377820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
