AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0979310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0979310 MtrunA17_Chr6g0458271 97.452 157 4 0 1 157 1 157 6.43e-111 311
Msa0979310 MtrunA17_Chr6g0458281 87.975 158 14 3 1 157 1 154 1.63e-92 265
Msa0979310 MtrunA17_Chr6g0473621 41.379 145 77 4 19 155 11 155 1.37e-27 105
Msa0979310 MtrunA17_Chr7g0243051 46.296 108 55 1 32 136 13 120 1.56e-26 99.8
Msa0979310 MtrunA17_Chr1g0203771 43.519 108 57 2 37 140 21 128 9.27e-25 97.4
Msa0979310 MtrunA17_Chr2g0285591 37.500 128 72 2 33 152 25 152 1.17e-23 92.8
Msa0979310 MtrunA17_Chr4g0057261 43.810 105 57 1 38 140 32 136 1.02e-22 90.9
Msa0979310 MtrunA17_Chr4g0007601 51.220 82 40 0 58 139 26 107 2.38e-18 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0979310 AT5G14360.1 54.386 171 56 5 1 157 1 163 2.26e-54 169
Msa0979310 AT5G40630.1 46.914 162 65 4 1 142 1 161 9.59e-43 139
Msa0979310 AT5G62100.3 49.057 106 53 1 38 142 15 120 1.26e-26 98.2
Msa0979310 AT5G62100.6 49.057 106 53 1 38 142 15 120 1.26e-26 98.2
Msa0979310 AT5G62100.5 48.148 108 55 1 38 144 15 122 7.68e-26 97.8
Msa0979310 AT5G62100.4 48.148 108 55 1 38 144 15 122 1.06e-25 97.8
Msa0979310 AT5G62100.2 48.148 108 55 1 38 144 15 122 6.71e-25 97.4
Msa0979310 AT5G62100.1 48.148 108 55 1 38 144 15 122 1.20e-24 96.7
Msa0979310 AT5G07220.1 42.017 119 68 1 38 155 21 139 1.27e-24 96.7
Msa0979310 AT5G52060.1 41.667 108 58 1 38 140 39 146 1.22e-21 89.4
Msa0979310 AT3G51780.1 41.071 112 50 2 36 131 8 119 2.01e-19 82.4

Find 41 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCTAGTTGTTGGAAATT+TGG 0.218945 6_4:+15987349 Msa0979310:three_prime_UTR
TTAATTTAATTTGATGTAAT+GGG 0.306583 6_4:+15987273 Msa0979310:three_prime_UTR
TTTAATTTAATTTGATGTAA+TGG 0.319189 6_4:+15987272 Msa0979310:three_prime_UTR
ATTGAAGCAACTTCAACTTT+TGG 0.327143 6_4:+15986188 Msa0979310:CDS
AGCATATCTAAACTTGGCTT+TGG 0.330269 6_4:+15985996 Msa0979310:CDS
GCTTGATTGTATCATGAATT+CGG 0.338407 6_4:-15987189 None:intergenic
TTCTTCACATGATTGGTGTT+AGG 0.341495 6_4:+15986977 Msa0979310:CDS
TTTGTCACTTGTAACAAGTT+TGG 0.343072 6_4:+15986900 Msa0979310:CDS
AATTTCAGGAGAATTGAAAA+TGG 0.360866 6_4:+15986876 Msa0979310:intron
TAGAGAAGCCTCTGCTCTCT+TGG 0.368216 6_4:-15986925 None:intergenic
AGAAATGAAGCTACTTGGTT+TGG 0.373066 6_4:+15987041 Msa0979310:CDS
TCACTACAATCCTTCTCAAT+TGG 0.382631 6_4:-15986038 None:intergenic
AGCTTCATTTCTTTGATAGC+TGG 0.393914 6_4:-15987030 None:intergenic
TCTTCACATGATTGGTGTTA+GGG 0.396279 6_4:+15986978 Msa0979310:CDS
AATGAATTTCTTCACATGAT+TGG 0.414769 6_4:+15986970 Msa0979310:CDS
ATGTGTACTTATCTAGTTGT+TGG 0.421501 6_4:+15987341 Msa0979310:three_prime_UTR
TTCTTCCAAAGAAAACATAA+AGG 0.426486 6_4:+15985908 Msa0979310:five_prime_UTR
ATCAAAGAAATGAAGCTACT+TGG 0.456169 6_4:+15987036 Msa0979310:CDS
ATCGTCTGATCTTAATCAAA+TGG 0.460419 6_4:+15987116 Msa0979310:three_prime_UTR
AGAGAGAGTAACAAAAGTGT+TGG 0.471291 6_4:+15986113 Msa0979310:CDS
TGTAGAAGCATATCTAAACT+TGG 0.485899 6_4:+15985990 Msa0979310:CDS
TGAAAATAGTGAAATCGAAT+GGG 0.493131 6_4:+15986058 Msa0979310:CDS
AACTCTTAATTAATTAGTGA+TGG 0.495859 6_4:+15987222 Msa0979310:three_prime_UTR
GTGAAAATAGTGAAATCGAA+TGG 0.497284 6_4:+15986057 Msa0979310:CDS
AAGCTACTTGGTTTGGCAAG+AGG 0.530918 6_4:+15987048 Msa0979310:CDS
TATACTCTGATTGTGTAACT+AGG 0.541450 6_4:-15987087 None:intergenic
ACAAACACTTCAACATAACA+TGG 0.544359 6_4:-15987403 None:intergenic
ATCGAATGGGAACTTAGGCC+TGG 0.546005 6_4:+15986071 Msa0979310:CDS
AATTAGTGATGGTGCTAACA+AGG 0.547999 6_4:+15987233 Msa0979310:three_prime_UTR
AAAATAAGATGATGAAGTTG+AGG 0.552877 6_4:+15985955 Msa0979310:exon
TGATGAAGTTGAGGTCAAAG+AGG 0.559715 6_4:+15985964 Msa0979310:CDS
GAGCAGAGGCTTCTCTACAA+AGG 0.569914 6_4:+15986931 Msa0979310:CDS
TTCTCTACAAAGGTAAAGAG+AGG 0.582260 6_4:+15986941 Msa0979310:CDS
GAGTTTCAACTATGTCAAAG+TGG 0.599297 6_4:+15986153 Msa0979310:CDS
AGTAGCATCTCCAATTGAGA+AGG 0.608005 6_4:+15986028 Msa0979310:CDS
GTGAAATCGAATGGGAACTT+AGG 0.612081 6_4:+15986066 Msa0979310:CDS
TGGTGTTAGGGACAAAGACA+AGG 0.622779 6_4:+15986990 Msa0979310:CDS
CAAACACTTCAACATAACAT+GGG 0.624081 6_4:-15987402 None:intergenic
GTTTGGAGCCAAGAGAGCAG+AGG 0.625131 6_4:+15986917 Msa0979310:CDS
TCTCTACAAAGGTAAAGAGA+GGG 0.650942 6_4:+15986942 Msa0979310:CDS
GAATGGGAACTTAGGCCTGG+TGG 0.713354 6_4:+15986074 Msa0979310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTGAACAATTATAATT+AGG + chr6_4:15986273-15986292 Msa0979310:intron 10.0%
!! TTTGAATTATTAACTAATAT+TGG + chr6_4:15986460-15986479 Msa0979310:intron 10.0%
!!! TTTAATTTAATTTGATGTAA+TGG + chr6_4:15987272-15987291 Msa0979310:three_prime_UTR 10.0%
!!! TTAATTTAATTTGATGTAAT+GGG + chr6_4:15987273-15987292 Msa0979310:three_prime_UTR 10.0%
!! TTAATTGAACAATTATAATT+AGG + chr6_4:15986273-15986292 Msa0979310:intron 10.0%
!! TTTGAATTATTAACTAATAT+TGG + chr6_4:15986460-15986479 Msa0979310:intron 10.0%
!!! TTTAATTTAATTTGATGTAA+TGG + chr6_4:15987272-15987291 Msa0979310:three_prime_UTR 10.0%
!!! TTAATTTAATTTGATGTAAT+GGG + chr6_4:15987273-15987292 Msa0979310:three_prime_UTR 10.0%
!! TTAGTTAATAATTCAAAGTT+CGG - chr6_4:15986457-15986476 None:intergenic 15.0%
!! GAATAATATAAATAAAAGCT+GGG - chr6_4:15986520-15986539 None:intergenic 15.0%
!! TGAATAATATAAATAAAAGC+TGG - chr6_4:15986521-15986540 None:intergenic 15.0%
!! CTTCAAAAAAAAAAAATTTG+AGG + chr6_4:15986828-15986847 Msa0979310:intron 15.0%
!!! CAAAATTTTGAAATAATTTC+AGG + chr6_4:15986862-15986881 Msa0979310:intron 15.0%
!! TTAGTTAATAATTCAAAGTT+CGG - chr6_4:15986457-15986476 None:intergenic 15.0%
!! GAATAATATAAATAAAAGCT+GGG - chr6_4:15986520-15986539 None:intergenic 15.0%
!! TGAATAATATAAATAAAAGC+TGG - chr6_4:15986521-15986540 None:intergenic 15.0%
!! CTTCAAAAAAAAAAAATTTG+AGG + chr6_4:15986828-15986847 Msa0979310:intron 15.0%
!!! CAAAATTTTGAAATAATTTC+AGG + chr6_4:15986862-15986881 Msa0979310:intron 15.0%
!!! TAAAACCTTTATGTTTTCTT+TGG - chr6_4:15985916-15985935 None:intergenic 20.0%
!! CAACTATAAAAATAACTTTG+AGG + chr6_4:15986796-15986815 Msa0979310:intron 20.0%
!! AACTCTTAATTAATTAGTGA+TGG + chr6_4:15987222-15987241 Msa0979310:three_prime_UTR 20.0%
!!! TCACTTTTTGTTTAGAATAT+AGG + chr6_4:15987303-15987322 Msa0979310:three_prime_UTR 20.0%
!!! TAAAACCTTTATGTTTTCTT+TGG - chr6_4:15985916-15985935 None:intergenic 20.0%
!! CAACTATAAAAATAACTTTG+AGG + chr6_4:15986796-15986815 Msa0979310:intron 20.0%
!! AACTCTTAATTAATTAGTGA+TGG + chr6_4:15987222-15987241 Msa0979310:three_prime_UTR 20.0%
!!! TCACTTTTTGTTTAGAATAT+AGG + chr6_4:15987303-15987322 Msa0979310:three_prime_UTR 20.0%
! TTCTTCCAAAGAAAACATAA+AGG + chr6_4:15985908-15985927 Msa0979310:five_prime_UTR 25.0%
! AAAATAAGATGATGAAGTTG+AGG + chr6_4:15985955-15985974 Msa0979310:exon 25.0%
! TGAAAATAGTGAAATCGAAT+GGG + chr6_4:15986058-15986077 Msa0979310:CDS 25.0%
! ACAAAAGGCAATACAAATAT+TGG - chr6_4:15986224-15986243 None:intergenic 25.0%
!! ACAAAAGAATTAGTTTGAAC+CGG - chr6_4:15986249-15986268 None:intergenic 25.0%
! TTGTGCATTACCATAAAATA+TGG + chr6_4:15986322-15986341 Msa0979310:intron 25.0%
!! CTGTAGATAATAACTTTTGT+TGG + chr6_4:15986487-15986506 Msa0979310:intron 25.0%
!!! TCTACTTTTCCTTTGAAAAT+TGG + chr6_4:15986711-15986730 Msa0979310:intron 25.0%
!!! TTGTCACAAAAGTTGATTTT+TGG + chr6_4:15986737-15986756 Msa0979310:intron 25.0%
! AATTTCAGGAGAATTGAAAA+TGG + chr6_4:15986876-15986895 Msa0979310:intron 25.0%
! AATGAATTTCTTCACATGAT+TGG + chr6_4:15986970-15986989 Msa0979310:CDS 25.0%
! TTATCTAGTTGTTGGAAATT+TGG + chr6_4:15987349-15987368 Msa0979310:three_prime_UTR 25.0%
! TTCTTCCAAAGAAAACATAA+AGG + chr6_4:15985908-15985927 Msa0979310:five_prime_UTR 25.0%
! AAAATAAGATGATGAAGTTG+AGG + chr6_4:15985955-15985974 Msa0979310:exon 25.0%
! TGAAAATAGTGAAATCGAAT+GGG + chr6_4:15986058-15986077 Msa0979310:CDS 25.0%
! ACAAAAGGCAATACAAATAT+TGG - chr6_4:15986224-15986243 None:intergenic 25.0%
!! ACAAAAGAATTAGTTTGAAC+CGG - chr6_4:15986249-15986268 None:intergenic 25.0%
! TTGTGCATTACCATAAAATA+TGG + chr6_4:15986322-15986341 Msa0979310:intron 25.0%
!! CTGTAGATAATAACTTTTGT+TGG + chr6_4:15986487-15986506 Msa0979310:intron 25.0%
!!! TCTACTTTTCCTTTGAAAAT+TGG + chr6_4:15986711-15986730 Msa0979310:intron 25.0%
!!! TTGTCACAAAAGTTGATTTT+TGG + chr6_4:15986737-15986756 Msa0979310:intron 25.0%
! AATTTCAGGAGAATTGAAAA+TGG + chr6_4:15986876-15986895 Msa0979310:intron 25.0%
! AATGAATTTCTTCACATGAT+TGG + chr6_4:15986970-15986989 Msa0979310:CDS 25.0%
! TTATCTAGTTGTTGGAAATT+TGG + chr6_4:15987349-15987368 Msa0979310:three_prime_UTR 25.0%
! TGTAGAAGCATATCTAAACT+TGG + chr6_4:15985990-15986009 Msa0979310:CDS 30.0%
GTGAAAATAGTGAAATCGAA+TGG + chr6_4:15986057-15986076 Msa0979310:CDS 30.0%
! ATTGAAGCAACTTCAACTTT+TGG + chr6_4:15986188-15986207 Msa0979310:CDS 30.0%
!! TTTGTATTGCCTTTTGTTTC+CGG + chr6_4:15986227-15986246 Msa0979310:intron 30.0%
! CACACTTTGACCATATTTTA+TGG - chr6_4:15986335-15986354 None:intergenic 30.0%
!! ACTTTTCCTTTGAAAATTGG+TGG + chr6_4:15986714-15986733 Msa0979310:intron 30.0%
! TTTGTCACTTGTAACAAGTT+TGG + chr6_4:15986900-15986919 Msa0979310:CDS 30.0%
ATCAAAGAAATGAAGCTACT+TGG + chr6_4:15987036-15987055 Msa0979310:CDS 30.0%
TATACTCTGATTGTGTAACT+AGG - chr6_4:15987090-15987109 None:intergenic 30.0%
ATCGTCTGATCTTAATCAAA+TGG + chr6_4:15987116-15987135 Msa0979310:three_prime_UTR 30.0%
GCTTGATTGTATCATGAATT+CGG - chr6_4:15987192-15987211 None:intergenic 30.0%
ATGTGTACTTATCTAGTTGT+TGG + chr6_4:15987341-15987360 Msa0979310:three_prime_UTR 30.0%
CAAACACTTCAACATAACAT+GGG - chr6_4:15987405-15987424 None:intergenic 30.0%
ACAAACACTTCAACATAACA+TGG - chr6_4:15987406-15987425 None:intergenic 30.0%
! TGTAGAAGCATATCTAAACT+TGG + chr6_4:15985990-15986009 Msa0979310:CDS 30.0%
GTGAAAATAGTGAAATCGAA+TGG + chr6_4:15986057-15986076 Msa0979310:CDS 30.0%
! ATTGAAGCAACTTCAACTTT+TGG + chr6_4:15986188-15986207 Msa0979310:CDS 30.0%
!! TTTGTATTGCCTTTTGTTTC+CGG + chr6_4:15986227-15986246 Msa0979310:intron 30.0%
! CACACTTTGACCATATTTTA+TGG - chr6_4:15986335-15986354 None:intergenic 30.0%
!! ACTTTTCCTTTGAAAATTGG+TGG + chr6_4:15986714-15986733 Msa0979310:intron 30.0%
! TTTGTCACTTGTAACAAGTT+TGG + chr6_4:15986900-15986919 Msa0979310:CDS 30.0%
ATCAAAGAAATGAAGCTACT+TGG + chr6_4:15987036-15987055 Msa0979310:CDS 30.0%
TATACTCTGATTGTGTAACT+AGG - chr6_4:15987090-15987109 None:intergenic 30.0%
ATCGTCTGATCTTAATCAAA+TGG + chr6_4:15987116-15987135 Msa0979310:three_prime_UTR 30.0%
GCTTGATTGTATCATGAATT+CGG - chr6_4:15987192-15987211 None:intergenic 30.0%
ATGTGTACTTATCTAGTTGT+TGG + chr6_4:15987341-15987360 Msa0979310:three_prime_UTR 30.0%
CAAACACTTCAACATAACAT+GGG - chr6_4:15987405-15987424 None:intergenic 30.0%
ACAAACACTTCAACATAACA+TGG - chr6_4:15987406-15987425 None:intergenic 30.0%
AGCATATCTAAACTTGGCTT+TGG + chr6_4:15985996-15986015 Msa0979310:CDS 35.0%
TCACTACAATCCTTCTCAAT+TGG - chr6_4:15986041-15986060 None:intergenic 35.0%
! AGAGAGAGTAACAAAAGTGT+TGG + chr6_4:15986113-15986132 Msa0979310:CDS 35.0%
GAGTTTCAACTATGTCAAAG+TGG + chr6_4:15986153-15986172 Msa0979310:CDS 35.0%
TAGTTTGAACCGGAAACAAA+AGG - chr6_4:15986239-15986258 None:intergenic 35.0%
TAATTCAAAGTTCGGCTAAG+AGG - chr6_4:15986449-15986468 None:intergenic 35.0%
!!! ACACACAAGCAAGACTTTTT+TGG - chr6_4:15986568-15986587 None:intergenic 35.0%
TCACATAGGTTGTCACAAAA+TGG - chr6_4:15986621-15986640 None:intergenic 35.0%
GAGAGATAAAGTTGTCACAT+AGG - chr6_4:15986635-15986654 None:intergenic 35.0%
ACTTTCTCTCTCTATTGCTT+TGG + chr6_4:15986674-15986693 Msa0979310:intron 35.0%
AGGAAAAGTAGATAGTGACA+CGG - chr6_4:15986703-15986722 None:intergenic 35.0%
! TGACAACCACCAATTTTCAA+AGG - chr6_4:15986723-15986742 None:intergenic 35.0%
TTCTCTACAAAGGTAAAGAG+AGG + chr6_4:15986941-15986960 Msa0979310:CDS 35.0%
TCTCTACAAAGGTAAAGAGA+GGG + chr6_4:15986942-15986961 Msa0979310:CDS 35.0%
! TTCTTCACATGATTGGTGTT+AGG + chr6_4:15986977-15986996 Msa0979310:CDS 35.0%
!! TCTTCACATGATTGGTGTTA+GGG + chr6_4:15986978-15986997 Msa0979310:CDS 35.0%
! AGCTTCATTTCTTTGATAGC+TGG - chr6_4:15987033-15987052 None:intergenic 35.0%
AGAAATGAAGCTACTTGGTT+TGG + chr6_4:15987041-15987060 Msa0979310:CDS 35.0%
! AATTAGTGATGGTGCTAACA+AGG + chr6_4:15987233-15987252 Msa0979310:three_prime_UTR 35.0%
AGCATATCTAAACTTGGCTT+TGG + chr6_4:15985996-15986015 Msa0979310:CDS 35.0%
TCACTACAATCCTTCTCAAT+TGG - chr6_4:15986041-15986060 None:intergenic 35.0%
! AGAGAGAGTAACAAAAGTGT+TGG + chr6_4:15986113-15986132 Msa0979310:CDS 35.0%
GAGTTTCAACTATGTCAAAG+TGG + chr6_4:15986153-15986172 Msa0979310:CDS 35.0%
TAGTTTGAACCGGAAACAAA+AGG - chr6_4:15986239-15986258 None:intergenic 35.0%
TAATTCAAAGTTCGGCTAAG+AGG - chr6_4:15986449-15986468 None:intergenic 35.0%
!!! ACACACAAGCAAGACTTTTT+TGG - chr6_4:15986568-15986587 None:intergenic 35.0%
TCACATAGGTTGTCACAAAA+TGG - chr6_4:15986621-15986640 None:intergenic 35.0%
GAGAGATAAAGTTGTCACAT+AGG - chr6_4:15986635-15986654 None:intergenic 35.0%
ACTTTCTCTCTCTATTGCTT+TGG + chr6_4:15986674-15986693 Msa0979310:intron 35.0%
AGGAAAAGTAGATAGTGACA+CGG - chr6_4:15986703-15986722 None:intergenic 35.0%
! TGACAACCACCAATTTTCAA+AGG - chr6_4:15986723-15986742 None:intergenic 35.0%
TTCTCTACAAAGGTAAAGAG+AGG + chr6_4:15986941-15986960 Msa0979310:CDS 35.0%
TCTCTACAAAGGTAAAGAGA+GGG + chr6_4:15986942-15986961 Msa0979310:CDS 35.0%
! TTCTTCACATGATTGGTGTT+AGG + chr6_4:15986977-15986996 Msa0979310:CDS 35.0%
!! TCTTCACATGATTGGTGTTA+GGG + chr6_4:15986978-15986997 Msa0979310:CDS 35.0%
! AGCTTCATTTCTTTGATAGC+TGG - chr6_4:15987033-15987052 None:intergenic 35.0%
AGAAATGAAGCTACTTGGTT+TGG + chr6_4:15987041-15987060 Msa0979310:CDS 35.0%
! AATTAGTGATGGTGCTAACA+AGG + chr6_4:15987233-15987252 Msa0979310:three_prime_UTR 35.0%
TGATGAAGTTGAGGTCAAAG+AGG + chr6_4:15985964-15985983 Msa0979310:CDS 40.0%
AGTAGCATCTCCAATTGAGA+AGG + chr6_4:15986028-15986047 Msa0979310:CDS 40.0%
GTGAAATCGAATGGGAACTT+AGG + chr6_4:15986066-15986085 Msa0979310:CDS 40.0%
TGATGAAGTTGAGGTCAAAG+AGG + chr6_4:15985964-15985983 Msa0979310:CDS 40.0%
AGTAGCATCTCCAATTGAGA+AGG + chr6_4:15986028-15986047 Msa0979310:CDS 40.0%
GTGAAATCGAATGGGAACTT+AGG + chr6_4:15986066-15986085 Msa0979310:CDS 40.0%
! TTTTGTACAAGCATGCCACC+AGG - chr6_4:15986092-15986111 None:intergenic 45.0%
! TGGTGTTAGGGACAAAGACA+AGG + chr6_4:15986990-15987009 Msa0979310:CDS 45.0%
!! AAGCTACTTGGTTTGGCAAG+AGG + chr6_4:15987048-15987067 Msa0979310:CDS 45.0%
! TTTTGTACAAGCATGCCACC+AGG - chr6_4:15986092-15986111 None:intergenic 45.0%
! TGGTGTTAGGGACAAAGACA+AGG + chr6_4:15986990-15987009 Msa0979310:CDS 45.0%
!! AAGCTACTTGGTTTGGCAAG+AGG + chr6_4:15987048-15987067 Msa0979310:CDS 45.0%
ATCGAATGGGAACTTAGGCC+TGG + chr6_4:15986071-15986090 Msa0979310:CDS 50.0%
TAGAGAAGCCTCTGCTCTCT+TGG - chr6_4:15986928-15986947 None:intergenic 50.0%
GAGCAGAGGCTTCTCTACAA+AGG + chr6_4:15986931-15986950 Msa0979310:CDS 50.0%
ATCGAATGGGAACTTAGGCC+TGG + chr6_4:15986071-15986090 Msa0979310:CDS 50.0%
TAGAGAAGCCTCTGCTCTCT+TGG - chr6_4:15986928-15986947 None:intergenic 50.0%
GAGCAGAGGCTTCTCTACAA+AGG + chr6_4:15986931-15986950 Msa0979310:CDS 50.0%
GAATGGGAACTTAGGCCTGG+TGG + chr6_4:15986074-15986093 Msa0979310:CDS 55.0%
! GTTTGGAGCCAAGAGAGCAG+AGG + chr6_4:15986917-15986936 Msa0979310:CDS 55.0%
GAATGGGAACTTAGGCCTGG+TGG + chr6_4:15986074-15986093 Msa0979310:CDS 55.0%
! GTTTGGAGCCAAGAGAGCAG+AGG + chr6_4:15986917-15986936 Msa0979310:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 15985898 15987470 15985898 ID=Msa0979310;Name=Msa0979310
chr6_4 mRNA 15985898 15987470 15985898 ID=Msa0979310-mRNA-1;Parent=Msa0979310;Name=Msa0979310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=65|1|1|1|1|1|2|360|157
chr6_4 exon 15985898 15986209 15985898 ID=Msa0979310-mRNA-1:exon:5184;Parent=Msa0979310-mRNA-1
chr6_4 exon 15986884 15987470 15986884 ID=Msa0979310-mRNA-1:exon:5185;Parent=Msa0979310-mRNA-1
chr6_4 five_prime_UTR 15985898 15985962 15985898 ID=Msa0979310-mRNA-1:five_prime_utr;Parent=Msa0979310-mRNA-1
chr6_4 CDS 15985963 15986209 15985963 ID=Msa0979310-mRNA-1:cds;Parent=Msa0979310-mRNA-1
chr6_4 CDS 15986884 15987110 15986884 ID=Msa0979310-mRNA-1:cds;Parent=Msa0979310-mRNA-1
chr6_4 three_prime_UTR 15987111 15987470 15987111 ID=Msa0979310-mRNA-1:three_prime_utr;Parent=Msa0979310-mRNA-1
Gene Sequence

>Msa0979310

ATGATGAAGTTGAGGTCAAAGAGGTTTTGTAGAAGCATATCTAAACTTGGCTTTGGAAACAAAGTAGTAGCATCTCCAATTGAGAAGGATTGTAGTGAAAATAGTGAAATCGAATGGGAACTTAGGCCTGGTGGCATGCTTGTACAAAAAAGAGAGAGTAACAAAAGTGTTGGAGAGATGATCACAATTAGAGTTTCAACTATGTCAAAGTGGCATGACATTTCTATTGAAGCAACTTCAACTTTTGGAGAATTGAAAATGGTTTTGTCACTTGTAACAAGTTTGGAGCCAAGAGAGCAGAGGCTTCTCTACAAAGGTAAAGAGAGGGATGACAATGAATTTCTTCACATGATTGGTGTTAGGGACAAAGACAAGGTTCTTCTTCTAGAAGATCCAGCTATCAAAGAAATGAAGCTACTTGGTTTGGCAAGAGGACAATCTATTAACAATCCTAGTTACACAATCAGAGTATAA
Protein sequence

>Msa0979310

MMKLRSKRFCRSISKLGFGNKVVASPIEKDCSENSEIEWELRPGGMLVQKRESNKSVGEMITIRVSTMSKWHDISIEATSTFGELKMVLSLVTSLEPREQRLLYKGKERDDNEFLHMIGVRDKDKVLLLEDPAIKEMKLLGLARGQSINNPSYTIRV*