AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1002960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002960 MtrunA17_Chr1g0193691 98.318 892 15 0 1 892 1 892 0.0 1825
Msa1002960 MtrunA17_Chr4g0054811 58.769 325 119 4 573 892 462 776 2.30e-114 367
Msa1002960 MtrunA17_Chr4g0054811 38.636 396 135 17 1 358 1 326 8.77e-53 197
Msa1002960 MtrunA17_Chr4g0031521 52.522 337 133 4 555 890 392 702 5.27e-109 351
Msa1002960 MtrunA17_Chr4g0031521 38.108 370 157 11 1 347 1 321 1.43e-56 207
Msa1002960 MtrunA17_Chr7g0238501 45.902 305 104 3 586 890 310 553 2.89e-79 267
Msa1002960 MtrunA17_Chr7g0238501 26.394 269 158 7 98 355 66 305 9.07e-17 84.7
Msa1002960 MtrunA17_Chr4g0039061 45.902 305 106 5 587 891 245 490 2.30e-74 252
Msa1002960 MtrunA17_Chr4g0039061 45.238 84 44 1 286 367 175 258 6.48e-18 87.8
Msa1002960 MtrunA17_Chr4g0067301 35.932 295 138 2 589 883 244 487 4.39e-56 201
Msa1002960 MtrunA17_Chr4g0067301 54.098 61 28 0 289 349 140 200 2.91e-12 70.1
Msa1002960 MtrunA17_Chr2g0295991 47.674 172 90 0 712 883 305 476 1.04e-47 177
Msa1002960 MtrunA17_Chr2g0295991 50.746 67 33 0 289 355 142 208 2.01e-13 73.9
Msa1002960 MtrunA17_Chr1g0213351 28.188 298 149 5 592 884 118 355 5.99e-33 131
Msa1002960 MtrunA17_Chr1g0207571 29.412 306 153 5 592 892 99 346 1.42e-31 127
Msa1002960 MtrunA17_Chr7g0263281 28.904 301 149 5 592 887 109 349 1.38e-29 121
Msa1002960 MtrunA17_Chr1g0181901 26.970 330 147 6 592 887 114 383 2.42e-29 121
Msa1002960 MtrunA17_Chr7g0250061 35.393 178 106 3 715 887 181 354 1.50e-26 112
Msa1002960 MtrunA17_Chr8g0371321 35.393 178 106 3 715 887 184 357 6.63e-26 111
Msa1002960 MtrunA17_Chr1g0211251 38.202 178 101 3 715 887 186 359 7.53e-26 110
Msa1002960 MtrunA17_Chr3g0089691 33.005 203 116 6 696 884 65 261 1.25e-22 99.8
Msa1002960 MtrunA17_Chr7g0223641 39.231 130 71 2 762 883 67 196 2.19e-22 96.3
Msa1002960 MtrunA17_Chr3g0089711 33.005 203 116 6 696 884 151 347 4.89e-22 99.0
Msa1002960 MtrunA17_Chr3g0089721 33.005 203 116 6 696 884 151 347 9.00e-22 98.2
Msa1002960 MtrunA17_Chr1g0175381 31.461 178 113 3 712 884 180 353 1.04e-21 98.6
Msa1002960 MtrunA17_Chr2g0294291 33.333 174 107 3 715 883 181 350 2.73e-21 97.1
Msa1002960 MtrunA17_Chr7g0256751 31.500 200 117 6 696 881 152 345 1.69e-17 86.3
Msa1002960 MtrunA17_Chr7g0256771 32.374 139 86 3 696 826 153 291 1.59e-13 72.8
Msa1002960 MtrunA17_Chr4g0063051 28.652 178 98 5 713 888 163 313 8.28e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002960 AT2G46920.3 62.959 899 271 16 1 892 1 844 0.0 1081
Msa1002960 AT2G46920.1 62.959 899 271 16 1 892 1 844 0.0 1081
Msa1002960 AT2G46920.2 62.959 899 271 16 1 892 1 844 0.0 1081
Msa1002960 AT2G46920.4 62.959 899 271 16 1 892 1 844 0.0 1081
Msa1002960 AT1G07630.1 53.824 340 126 6 555 890 348 660 3.73e-114 364
Msa1002960 AT1G07630.1 39.730 370 145 13 1 347 1 315 1.91e-62 224
Msa1002960 AT2G35350.1 50.131 383 168 8 517 892 414 780 9.17e-109 353
Msa1002960 AT2G35350.1 38.227 361 129 14 25 354 37 334 6.76e-47 180
Msa1002960 AT2G28890.1 55.960 302 110 3 589 890 374 652 8.76e-108 347
Msa1002960 AT2G28890.1 42.033 364 139 13 1 347 1 309 8.13e-64 228
Msa1002960 AT5G02400.1 55.844 308 110 5 584 891 392 673 7.13e-106 342
Msa1002960 AT5G02400.1 36.628 344 132 11 31 349 31 313 1.33e-47 181
Msa1002960 AT3G09400.1 56.209 306 101 5 586 891 377 649 5.69e-105 339
Msa1002960 AT3G09400.1 33.060 366 163 12 1 346 1 304 9.49e-39 154
Msa1002960 AT3G09400.2 52.222 270 96 5 586 855 377 613 4.45e-79 270
Msa1002960 AT3G09400.2 33.060 366 163 12 1 346 1 304 6.88e-39 154
Msa1002960 AT3G16560.1 43.023 172 98 0 712 883 309 480 3.11e-45 171
Msa1002960 AT3G16560.4 43.023 172 98 0 712 883 309 480 3.11e-45 171
Msa1002960 AT3G16560.2 43.023 172 98 0 712 883 309 480 3.11e-45 171
Msa1002960 AT3G16560.3 41.667 144 84 0 712 855 309 452 1.54e-33 135
Msa1002960 AT4G38520.2 29.831 295 142 5 592 881 119 353 8.57e-33 132
Msa1002960 AT4G38520.1 29.831 295 142 5 592 881 119 353 8.57e-33 132
Msa1002960 AT3G12620.2 28.165 316 161 6 577 887 107 361 6.24e-31 126
Msa1002960 AT3G12620.1 28.165 316 161 6 577 887 107 361 6.24e-31 126
Msa1002960 AT5G06750.2 26.578 301 159 4 592 887 38 281 8.86e-29 118
Msa1002960 AT5G06750.3 26.578 301 159 4 592 887 120 363 3.36e-28 118
Msa1002960 AT5G06750.1 26.578 301 159 4 592 887 120 363 3.36e-28 118
Msa1002960 AT3G55050.1 37.288 177 102 3 712 883 186 358 1.09e-27 116
Msa1002960 AT3G55050.2 37.288 177 102 3 712 883 186 358 1.09e-27 116
Msa1002960 AT3G51370.2 35.429 175 104 3 715 884 99 269 6.58e-27 112
Msa1002960 AT5G66080.2 37.079 178 103 3 712 884 80 253 1.31e-26 110
Msa1002960 AT3G17090.1 36.364 176 103 3 713 883 187 358 3.72e-26 112
Msa1002960 AT3G51370.1 35.429 175 104 3 715 884 184 354 5.38e-26 111
Msa1002960 AT3G51370.3 35.429 175 104 3 715 884 184 354 5.38e-26 111
Msa1002960 AT5G66080.1 37.079 178 103 3 712 884 184 357 1.34e-25 110
Msa1002960 AT5G02760.1 39.205 176 98 3 713 883 173 344 5.12e-24 105
Msa1002960 AT4G33920.3 34.286 175 106 3 715 884 56 226 3.78e-23 100
Msa1002960 AT4G33920.2 34.286 175 106 3 715 884 86 256 7.04e-23 100
Msa1002960 AT4G33920.1 34.286 175 106 3 715 884 169 339 2.98e-22 100
Msa1002960 AT3G17090.2 37.069 116 68 2 713 823 187 302 2.87e-17 84.3

Find 272 sgRNAs with CRISPR-Local

Find 525 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAAGAGCTTTCTTATTTA+TGG 0.115163 6_4:+89771348 None:intergenic
TCTCTTTCTTTCTTCTTTCT+TGG 0.148286 6_4:+89778245 None:intergenic
TTTCAGGGACTTCGGGTTTA+AGG 0.173499 6_4:+89776518 None:intergenic
ATCAAGACAATATGCAAATA+TGG 0.178352 6_4:+89771482 None:intergenic
CTTCTTCATTGCTGAAATAT+TGG 0.212752 6_4:+89773436 None:intergenic
CATGTTTGCTGGTGATTTCT+TGG 0.218670 6_4:-89777214 Msa1002960:CDS
AAATCCAGAACTTGCTATAA+TGG 0.219054 6_4:-89775741 Msa1002960:CDS
AATAATAATAATTGGAGATT+TGG 0.224260 6_4:+89778169 None:intergenic
ACTACGTTTAAGACGATTTC+AGG 0.226435 6_4:-89777294 Msa1002960:CDS
CAGCCAGTTCCACGCGGTTC+TGG 0.228026 6_4:-89777141 Msa1002960:CDS
GATTGATCCTTGATTAATTC+AGG 0.235778 6_4:+89776400 None:intergenic
GAACAAGGGTGGTTGTTTAT+TGG 0.236233 6_4:-89776661 Msa1002960:CDS
GGGAGATAGTCGTGTGATTT+TGG 0.243703 6_4:-89775663 Msa1002960:CDS
GATTTCTAAAATCAATTTAC+TGG 0.245549 6_4:+89771442 None:intergenic
GAGTAATAATGGGGTGGTTA+TGG 0.255294 6_4:-89777696 Msa1002960:five_prime_UTR
GAAAAGGTAAAAGAAGTTTA+AGG 0.257265 6_4:-89776255 Msa1002960:CDS
ATCTGTCATGGTCGTTTCTT+TGG 0.260064 6_4:-89771595 Msa1002960:CDS
AACAAGGGTGGTTGTTTATT+GGG 0.261849 6_4:-89776660 Msa1002960:CDS
CTCTTTCTTTCTTCTTTCTT+GGG 0.265047 6_4:+89778246 None:intergenic
GGGTAAATTCAAAACAAATT+AGG 0.279468 6_4:+89771370 None:intergenic
CATGGTCAAGTGAGTAATAA+TGG 0.297271 6_4:-89777707 Msa1002960:five_prime_UTR
ATCGTCTTAAACGTAGTTTC+AGG 0.297907 6_4:+89777300 None:intergenic
ATGGAGCATTCTAATTCTTC+TGG 0.301105 6_4:-89777348 Msa1002960:CDS
AGTAATAATGGGGTGGTTAT+GGG 0.306325 6_4:-89777695 Msa1002960:five_prime_UTR
TTCTTCAAGTGACCGATTCT+TGG 0.307365 6_4:-89773481 Msa1002960:CDS
GGGGTGGTTATGGGGTTTGA+TGG 0.308122 6_4:-89777686 Msa1002960:five_prime_UTR
AATCCAGAACTTGCTATAAT+GGG 0.309261 6_4:-89775740 Msa1002960:CDS
TTAACAGAGAAGCACTTAAA+AGG 0.310457 6_4:+89771522 None:intergenic
TTAAGAGCTTTCTTATTTAT+GGG 0.310990 6_4:+89771349 None:intergenic
AGAAGTGGTGGTTTCATGTC+TGG 0.317726 6_4:-89777057 Msa1002960:CDS
TTAAAAGTTACCAGAGCATT+TGG 0.331448 6_4:-89774658 Msa1002960:CDS
AGCTACTTCAAATGGAATCT+TGG 0.332616 6_4:-89776225 Msa1002960:CDS
TATTGTGCAGGATCGCCTTC+TGG 0.333824 6_4:+89773378 None:intergenic
ATTAAACAATAACCTTGAAA+TGG 0.336830 6_4:-89777935 Msa1002960:five_prime_UTR
TCTTGATATTGAAACAATCT+TGG 0.339496 6_4:-89771466 Msa1002960:three_prime_UTR
CGCGGTTCTGGACCTTTGAA+TGG 0.340155 6_4:-89777129 Msa1002960:CDS
TTTCTTTGGAGGGAAGGATT+TGG 0.340333 6_4:-89771581 Msa1002960:CDS
TTTCACTCGATCATTCAATA+TGG 0.340343 6_4:+89774687 None:intergenic
AGGTTATTGTTTAATTTGAT+TGG 0.342556 6_4:+89777943 None:intergenic
AGATGTTTATGTCATGAATC+TGG 0.343955 6_4:-89775684 Msa1002960:CDS
GAGCCATTAGATGAAGGTTT+AGG 0.346607 6_4:-89777504 Msa1002960:CDS
GACCCCATTATAGCAAGTTC+TGG 0.349623 6_4:+89775737 None:intergenic
TCCTTTGATCTGACCCTTTG+AGG 0.354335 6_4:-89777830 Msa1002960:five_prime_UTR
AGGGAAAGGCCGGTGAAGAT+AGG 0.358505 6_4:-89776705 Msa1002960:CDS
GAAAATGGAAGCACTGGGTT+TGG 0.360276 6_4:-89776076 Msa1002960:CDS
TCAAGACAATATGCAAATAT+GGG 0.366055 6_4:+89771483 None:intergenic
TTCAGGGACTTCGGGTTTAA+GGG 0.372236 6_4:+89776519 None:intergenic
CCGTCTACATCAGGGGAAAA+TGG 0.373824 6_4:-89776091 Msa1002960:CDS
TCTTTCCTTGGAGTTATGAT+TGG 0.374905 6_4:-89775928 Msa1002960:CDS
ATTTCCGACCGACTGGATTC+TGG 0.375849 6_4:+89776475 None:intergenic
TTTAAAGTTTCAGGGACTTC+GGG 0.377366 6_4:+89776511 None:intergenic
TTTGTATTTGTATTTGTTGA+GGG 0.384181 6_4:-89777639 Msa1002960:five_prime_UTR
TAGATTTCTAGACAAAGAAT+TGG 0.384327 6_4:-89776581 Msa1002960:CDS
AACAGCTTCGTGCTCCTTGT+TGG 0.386048 6_4:+89776048 None:intergenic
GTGTTTCAAGTTAAATATAT+CGG 0.387374 6_4:-89773552 Msa1002960:CDS
GAACCTGCTGCTTCGTTTGA+GGG 0.388487 6_4:-89777192 Msa1002960:CDS
TACTTCCACAATTAGATAAC+TGG 0.389161 6_4:+89776323 None:intergenic
GGTCCAGAACCGCGTGGAAC+TGG 0.389417 6_4:+89777138 None:intergenic
TTCTTCTGGTTTACACAAGC+AGG 0.391131 6_4:-89777334 Msa1002960:CDS
AAACCTTGAGTGGTTCGTTT+AGG 0.394527 6_4:-89777380 Msa1002960:CDS
TCCTTGACAGAGCTTGAATT+AGG 0.400913 6_4:+89775614 None:intergenic
AGAAGAGAAGCTCTGCAATA+AGG 0.401305 6_4:+89773355 None:intergenic
GGAACCTGCTGCTTCGTTTG+AGG 0.404499 6_4:-89777193 Msa1002960:CDS
CATGAAAAGTTGACTGGAAA+AGG 0.406487 6_4:-89776271 Msa1002960:CDS
TTGGAGAGAGGCTTTGCCTC+AGG 0.406640 6_4:-89777090 Msa1002960:CDS
GCATAATCTGCAGTGGGCTC+AGG 0.409987 6_4:-89776725 Msa1002960:CDS
AACGGCACTTCTCGTGTTGT+TGG 0.410651 6_4:-89777576 Msa1002960:CDS
GGCCATGCCAACTGAGTAAC+CGG 0.412628 6_4:+89776832 None:intergenic
TGTCCTAAACCTTCATCTAA+TGG 0.414208 6_4:+89777501 None:intergenic
AAGAATTGGAAGGTTTACTT+TGG 0.414277 6_4:-89776567 Msa1002960:CDS
GCAAAGGTTGTTCTTTCAAC+CGG 0.415006 6_4:-89776851 Msa1002960:CDS
TCTTGATAACATGATTGTTA+TGG 0.415311 6_4:+89775507 None:intergenic
CGGCCTACACTTAGTATCTC+TGG 0.415577 6_4:+89776807 None:intergenic
GCTTTATGAGCTACTTCAAA+TGG 0.418404 6_4:-89776233 Msa1002960:CDS
TGATTGTTATGGTTGTGAAT+TGG 0.419136 6_4:+89775518 None:intergenic
GATGAAGGCCCGTCTACATC+AGG 0.424284 6_4:-89776100 Msa1002960:CDS
GGGTGGTTATGGGGTTTGAT+GGG 0.424314 6_4:-89777685 Msa1002960:five_prime_UTR
CTTGATATTGAAACAATCTT+GGG 0.428125 6_4:-89771465 Msa1002960:three_prime_UTR
TTAAACAATAACCTTGAAAT+GGG 0.428739 6_4:-89777934 Msa1002960:five_prime_UTR
AGAATTGGAAGGTTTACTTT+GGG 0.429016 6_4:-89776566 Msa1002960:CDS
AAAACACTCTTTACCTCAAA+GGG 0.430978 6_4:+89777817 None:intergenic
CAATGAGATAGTTGAGGAAA+AGG 0.433095 6_4:-89776371 Msa1002960:CDS
TGTGTAAGAAACTCTTTCCT+TGG 0.434759 6_4:-89775940 Msa1002960:CDS
CCTATTAGAAAATGCAGGTC+TGG 0.442699 6_4:-89775857 Msa1002960:CDS
TTCGTTTAGGCATGATAGTA+TGG 0.443765 6_4:-89777367 Msa1002960:CDS
CGCAAGTGGTGCCGAAAAGT+TGG 0.445340 6_4:+89776984 None:intergenic
GCTACTTCAAATGGAATCTT+GGG 0.449531 6_4:-89776224 Msa1002960:CDS
TTCTTGGTACTCTCCTCTGA+TGG 0.453141 6_4:-89773465 Msa1002960:CDS
AATATGGCCTGACTATCATC+AGG 0.454667 6_4:+89774703 None:intergenic
TGTCATGGTCGTTTCTTTGG+AGG 0.454997 6_4:-89771592 Msa1002960:CDS
TTGTTTAATTTGATTGGTGA+TGG 0.456228 6_4:+89777949 None:intergenic
GGAAACGGCGGAGAATAATC+TGG 0.457804 6_4:-89775768 Msa1002960:CDS
AACCAGAGTGCCATGTTTGC+TGG 0.458335 6_4:-89777225 Msa1002960:CDS
AAACACAAGGGCAGCAGTAA+AGG 0.460107 6_4:+89771317 None:intergenic
AGGCTTTGCCTCAGGTCCAT+TGG 0.460532 6_4:-89777082 Msa1002960:CDS
CATCTCATGAGAAGTGTTAG+TGG 0.460965 6_4:-89776934 Msa1002960:CDS
TTCTGGTCCTGAATTAATCA+AGG 0.463926 6_4:-89776407 Msa1002960:CDS
ATCAGACATTTCCGACCGAC+TGG 0.465386 6_4:+89776468 None:intergenic
GTTACCAGAGCATTTGGCGC+TGG 0.466936 6_4:-89774652 Msa1002960:CDS
CGAGAAAACGTGTTCTTCAC+CGG 0.469877 6_4:+89776910 None:intergenic
GTTCAACATGAAAAGTTGAC+TGG 0.470671 6_4:-89776277 Msa1002960:CDS
CTTGGAGTTATGATTGGCAT+AGG 0.472134 6_4:-89775922 Msa1002960:CDS
TGCCCATGTCACATGGTTCA+TGG 0.473613 6_4:-89773409 Msa1002960:CDS
GTTTATGTCTCAATGATTCA+AGG 0.473669 6_4:-89778002 Msa1002960:five_prime_UTR
GGAACATACCTCTTCAATAC+TGG 0.475850 6_4:+89775412 None:intergenic
ACAAGTAGGTTGAAGGGGAC+AGG 0.476334 6_4:+89778025 None:intergenic
CTACGTTTAAGACGATTTCA+GGG 0.478288 6_4:-89777293 Msa1002960:CDS
TCAGGGGAAAATGGAAGCAC+TGG 0.478893 6_4:-89776082 Msa1002960:CDS
TTACCAGAGCATTTGGCGCT+GGG 0.480372 6_4:-89774651 Msa1002960:CDS
AGAACACCCTGATGATAGTC+AGG 0.480584 6_4:-89774710 Msa1002960:CDS
GTTTGTATTTGTATTTGTTG+AGG 0.480678 6_4:-89777640 Msa1002960:five_prime_UTR
TTGTTTATTGGGATATATGA+CGG 0.481266 6_4:-89776649 Msa1002960:CDS
AGTTTCTTACACAAGGACTT+TGG 0.483606 6_4:+89775950 None:intergenic
ATGGTCAAGTGAGTAATAAT+GGG 0.484486 6_4:-89777706 Msa1002960:five_prime_UTR
TCTTGGTACTCTCCTCTGAT+GGG 0.485583 6_4:-89773464 Msa1002960:CDS
GAGAAAATATTAGAAGCCTC+TGG 0.488265 6_4:-89775881 Msa1002960:CDS
AGAAGATGGCTCTAAACATC+AGG 0.492537 6_4:-89776122 Msa1002960:CDS
TCGTCTTAAACGTAGTTTCA+GGG 0.494913 6_4:+89777301 None:intergenic
GTACAGAAGGAGTGCAACTT+AGG 0.495852 6_4:+89773517 None:intergenic
CATAAACACAAGTAGGTTGA+AGG 0.496059 6_4:+89778018 None:intergenic
CCGCGTGGAACTGGCTGCAA+AGG 0.496825 6_4:+89777147 None:intergenic
GGAAGGATTTGGAGATCATC+GGG 0.497013 6_4:-89771570 Msa1002960:CDS
TTTAATTTGATTGGTGATGG+TGG 0.497367 6_4:+89777952 None:intergenic
GAACCCAGCGCCAAATGCTC+TGG 0.499040 6_4:+89774648 None:intergenic
AAGAACAGAAGAGGCATACA+TGG 0.499922 6_4:-89775789 Msa1002960:CDS
CTTTCAACCGGTTACTCAGT+TGG 0.503085 6_4:-89776839 Msa1002960:CDS
GTCATGGTCGTTTCTTTGGA+GGG 0.503413 6_4:-89771591 Msa1002960:CDS
GAAGTGGTGGTTTCATGTCT+GGG 0.504538 6_4:-89777056 Msa1002960:CDS
ATGTCTGGTCCTTTGGAGAG+AGG 0.507990 6_4:-89777102 Msa1002960:CDS
AACATTCTCTAAGCACTCCA+TGG 0.508300 6_4:-89776887 Msa1002960:CDS
ATCAAGAGTGCTTGAATCAA+CGG 0.509625 6_4:+89777407 None:intergenic
GATGTTTATGTCATGAATCT+GGG 0.511586 6_4:-89775683 Msa1002960:CDS
TGGTCGTTTCTTTGGAGGGA+AGG 0.514079 6_4:-89771587 Msa1002960:CDS
GTAATAATGGGGTGGTTATG+GGG 0.514967 6_4:-89777694 Msa1002960:five_prime_UTR
AGCACTCCATGGGTGGAAGT+TGG 0.516622 6_4:-89776876 Msa1002960:CDS
TGTCTAGAAATCTATAAAGA+TGG 0.517327 6_4:+89776590 None:intergenic
TCGTCTACTGTAAGAGAAGA+TGG 0.519430 6_4:-89776136 Msa1002960:CDS
TCGGGTTTAAGGGAATCTAC+AGG 0.519852 6_4:+89776529 None:intergenic
GCAGGAGATTCAAACATAGT+TGG 0.520083 6_4:+89777459 None:intergenic
AGTGTAGGCCGGACATCTCT+AGG 0.520773 6_4:-89776795 Msa1002960:CDS
TGGCGCTGGGTTCTTGAAGA+GGG 0.522136 6_4:-89774638 Msa1002960:intron
TTCTGCCTTGATACAGAAGC+AGG 0.522225 6_4:+89776022 None:intergenic
TTGATATTCCTCATGGAGAT+CGG 0.526663 6_4:-89771638 Msa1002960:CDS
TCAAAACAAATTAGGACTGG+TGG 0.527155 6_4:+89771378 None:intergenic
GGGAAAGGCCGGTGAAGATA+GGG 0.528809 6_4:-89776704 Msa1002960:CDS
GGTTGTTTAGTGCCATTCAA+TGG 0.531093 6_4:-89777555 Msa1002960:CDS
CAGTGGGCTCAGGGAAAGGC+CGG 0.533471 6_4:-89776715 Msa1002960:CDS
TTGGCGCTGGGTTCTTGAAG+AGG 0.534380 6_4:-89774639 Msa1002960:CDS
CTTGATTCTGAAACCTTGAG+TGG 0.534406 6_4:-89777390 Msa1002960:CDS
ACCGTCCCGTGTCCTTTGAT+AGG 0.537516 6_4:-89778223 Msa1002960:five_prime_UTR
TCTGCAGTGGGCTCAGGGAA+AGG 0.538895 6_4:-89776719 Msa1002960:CDS
TAGAGAGTCATTAGTACGCA+TGG 0.542192 6_4:-89775567 Msa1002960:CDS
CAGAGGAGAGTACCAAGAAT+CGG 0.545943 6_4:+89773469 None:intergenic
GGCTCTAAACATCAGGATGA+AGG 0.546035 6_4:-89776115 Msa1002960:CDS
CCACAGTTCCTAGAGATGTC+CGG 0.547445 6_4:+89776787 None:intergenic
GGGAAGGATTTGGAGATCAT+CGG 0.548516 6_4:-89771571 Msa1002960:CDS
CATGTCTGGGCCGATAGAGA+AGG 0.548519 6_4:-89777043 Msa1002960:CDS
GAATTCGATGGACTAATAGC+AGG 0.549082 6_4:+89777441 None:intergenic
ACCTCAAAGGGTCAGATCAA+AGG 0.549244 6_4:+89777829 None:intergenic
ATGTCTGGGCCGATAGAGAA+GGG 0.549805 6_4:-89777042 Msa1002960:CDS
TCCTAATTCAAGCTCTGTCA+AGG 0.550425 6_4:-89775615 Msa1002960:CDS
TTTCCATGAACCATGTGACA+TGG 0.550559 6_4:+89773406 None:intergenic
CAAGAAATCACCAGCAAACA+TGG 0.551763 6_4:+89777215 None:intergenic
GAACAAAGATTGAGACAAAG+AGG 0.551861 6_4:+89778074 None:intergenic
GAACTGCTTGATATTCCTCA+TGG 0.552205 6_4:-89771645 Msa1002960:CDS
TCTTCTGGTTTACACAAGCA+GGG 0.552435 6_4:-89777333 Msa1002960:CDS
AACCGGTTACTCAGTTGGCA+TGG 0.552985 6_4:-89776834 Msa1002960:CDS
CTCCTACGACCACGCGCAAG+TGG 0.552988 6_4:+89776970 None:intergenic
AATGTTTCCACAGCAAGGAC+AGG 0.553085 6_4:-89777255 Msa1002960:CDS
TACATGAACCCTATCTTCAC+CGG 0.553678 6_4:+89776696 None:intergenic
CATAATCTGCAGTGGGCTCA+GGG 0.555002 6_4:-89776724 Msa1002960:CDS
TAAGAGCTTTCTTATTTATG+GGG 0.555187 6_4:+89771350 None:intergenic
TTTCTAGACAAAGAATTGGA+AGG 0.556075 6_4:-89776577 Msa1002960:CDS
TTGGAGTTATGATTGGCATA+GGG 0.556902 6_4:-89775921 Msa1002960:CDS
GAACACCAGTTATCTAATTG+TGG 0.557159 6_4:-89776328 Msa1002960:CDS
TGACAGAGCTTGAATTAGGA+TGG 0.557579 6_4:+89775618 None:intergenic
TGTCCTTGCTGTGGAAACAT+TGG 0.558283 6_4:+89777257 None:intergenic
ATTGAGACATAAACACAAGT+AGG 0.558791 6_4:+89778011 None:intergenic
CATGAGAAGTGTTAGTGGAC+CGG 0.559099 6_4:-89776929 Msa1002960:CDS
GAAGGAGTGCAACTTAGGTA+AGG 0.559882 6_4:+89773522 None:intergenic
TGTTTATACTCAGCTTCATA+CGG 0.562140 6_4:+89776751 None:intergenic
CAAGACAATATGCAAATATG+GGG 0.562381 6_4:+89771484 None:intergenic
CCTCTTCAATACTGGTGCTG+TGG 0.563096 6_4:+89775420 None:intergenic
GTTCCCTCAAACGAAGCAGC+AGG 0.565776 6_4:+89777189 None:intergenic
TTCTCTAAGCACTCCATGGG+TGG 0.568004 6_4:-89776883 Msa1002960:CDS
TTGCATCCAACTTCCACCCA+TGG 0.569523 6_4:+89776870 None:intergenic
AATTCAAAACAAATTAGGAC+TGG 0.569768 6_4:+89771375 None:intergenic
TAATGATTCCTCAGTTCCGA+TGG 0.572372 6_4:-89776191 Msa1002960:CDS
AGCTCTTGAAAGAACAGAAG+AGG 0.572536 6_4:-89775798 Msa1002960:CDS
TAGTACGCATGGAGCTCGAT+AGG 0.574316 6_4:-89775556 Msa1002960:CDS
AGTCGATGGTGAAGTACAGA+AGG 0.575455 6_4:+89773504 None:intergenic
TTCCATGAACCATGTGACAT+GGG 0.576524 6_4:+89773407 None:intergenic
ATATTTCAGCAATGAAGAAG+TGG 0.576694 6_4:-89773433 Msa1002960:CDS
CTGGACCTATTAGAAAATGC+AGG 0.576782 6_4:-89775862 Msa1002960:CDS
CACCACTTGCGCGTGGTCGT+AGG 0.578737 6_4:-89776972 Msa1002960:CDS
AGAAGAGGCATACATGGAAA+CGG 0.579428 6_4:-89775783 Msa1002960:CDS
TCACGATGATGTATCTGTCA+TGG 0.582123 6_4:-89771607 Msa1002960:CDS
CACTTGCGCGTGGTCGTAGG+AGG 0.582141 6_4:-89776969 Msa1002960:CDS
CACCAGCAAACATGGCACTC+TGG 0.582390 6_4:+89777223 None:intergenic
ATAAACACAAGTAGGTTGAA+GGG 0.583940 6_4:+89778019 None:intergenic
AAACCACCACTTCTATCCAA+TGG 0.584898 6_4:+89777066 None:intergenic
ATATTGAATGATCGAGTGAA+AGG 0.587589 6_4:-89774685 Msa1002960:CDS
GTGCCAATGTTTCCACAGCA+AGG 0.588563 6_4:-89777260 Msa1002960:CDS
ATGCCTAAACGAACCACTCA+AGG 0.588964 6_4:+89777377 None:intergenic
CAGAGATACTAAGTGTAGGC+CGG 0.591967 6_4:-89776806 Msa1002960:CDS
ATGAAGGCCCGTCTACATCA+GGG 0.593568 6_4:-89776099 Msa1002960:CDS
ACCGCCACCTGTCCTTGCTG+TGG 0.597591 6_4:+89777248 None:intergenic
TCCACAGCAAGGACAGGTGG+CGG 0.597778 6_4:-89777249 Msa1002960:CDS
CCACAGCACCAGTATTGAAG+AGG 0.599719 6_4:-89775420 Msa1002960:intron
GAGGCAAAGCCTCTCTCCAA+AGG 0.600093 6_4:+89777093 None:intergenic
CTATGCCAATCATAACTCCA+AGG 0.602658 6_4:+89775923 None:intergenic
CAGGGGAAAATGGAAGCACT+GGG 0.604592 6_4:-89776081 Msa1002960:CDS
TGCTCCAGAATCCAGTCGGT+CGG 0.605509 6_4:-89776479 Msa1002960:CDS
CAAGTAGGTTGAAGGGGACA+GGG 0.605511 6_4:+89778026 None:intergenic
ATTTAACAATGAGATAGTTG+AGG 0.605777 6_4:-89776377 Msa1002960:CDS
TCCTATCAAAGGACACGGGA+CGG 0.605839 6_4:+89778222 None:intergenic
TCTGCAATAAGGTATTGTGC+AGG 0.607567 6_4:+89773366 None:intergenic
GATTTATCAGTGTCATCAAG+AGG 0.609649 6_4:+89777006 None:intergenic
TTCTTTCTGAAGAACAAGGG+TGG 0.610228 6_4:-89776672 Msa1002960:CDS
AAGTGGTTGCCCATGTCACA+TGG 0.611403 6_4:-89773416 Msa1002960:CDS
GTAGTTCTTTCTGAAGAACA+AGG 0.612578 6_4:-89776676 Msa1002960:CDS
AGGAAAGAGTTTCTTACACA+AGG 0.612990 6_4:+89775943 None:intergenic
GGTCCATTGGATAGAAGTGG+TGG 0.613640 6_4:-89777069 Msa1002960:CDS
TGGGTTTGGTTCAACCAACA+AGG 0.615592 6_4:-89776062 Msa1002960:CDS
TGTTCTAGTGATGTTGATGA+AGG 0.616258 6_4:-89775711 Msa1002960:CDS
GTAAACCTCTCAGAATTCGA+TGG 0.616459 6_4:+89777429 None:intergenic
CAGCGTTGAGATCCTATCAA+AGG 0.617080 6_4:+89778211 None:intergenic
TAAACACAAGTAGGTTGAAG+GGG 0.620622 6_4:+89778020 None:intergenic
ACATTCTCTAAGCACTCCAT+GGG 0.625166 6_4:-89776886 Msa1002960:CDS
TCAGGTCCATTGGATAGAAG+TGG 0.629020 6_4:-89777072 Msa1002960:CDS
ATCCAGAACTTGCTATAATG+GGG 0.629741 6_4:-89775739 Msa1002960:CDS
CTCATGAGATGTTGTAGACG+CGG 0.630558 6_4:+89776946 None:intergenic
AGTAGAGCTTCGTTAAAAGA+CGG 0.635257 6_4:+89773579 None:intergenic
CCGACTGGATTCTGGAGCAA+CGG 0.636821 6_4:+89776483 None:intergenic
TGGGTGGAAGTTGGATGCAA+AGG 0.637203 6_4:-89776867 Msa1002960:CDS
AACACACGCATAATCTGCAG+TGG 0.639874 6_4:-89776732 Msa1002960:CDS
GGGAATTTGATGATGATGCA+TGG 0.640341 6_4:-89777725 Msa1002960:five_prime_UTR
GTTTCCACAGCAAGGACAGG+TGG 0.641159 6_4:-89777252 Msa1002960:CDS
TATTGACTCCATCGGAACTG+AGG 0.647628 6_4:+89776183 None:intergenic
TTCATGGAAAATGTTCCAGA+AGG 0.647918 6_4:-89773393 Msa1002960:CDS
TCTCTTACAGTAGACGAGCA+AGG 0.648174 6_4:+89776142 None:intergenic
ATTTGCAAAATGATATCTCG+CGG 0.648758 6_4:+89775474 None:intergenic
GGTCACTTGAAGAAAGTCGA+TGG 0.652423 6_4:+89773490 None:intergenic
TGAGATCCTATCAAAGGACA+CGG 0.653123 6_4:+89778217 None:intergenic
TAGTTCTTTCTGAAGAACAA+GGG 0.654250 6_4:-89776675 Msa1002960:CDS
GTCTGGGCCGATAGAGAAGG+GGG 0.654295 6_4:-89777040 Msa1002960:CDS
CCAGACATAAAACCATTCAA+AGG 0.654611 6_4:+89777117 None:intergenic
TCATCTAGTATTGACTCCAT+CGG 0.655797 6_4:+89776175 None:intergenic
CTACACTTAGTATCTCTGGA+AGG 0.659028 6_4:+89776811 None:intergenic
CTTCCAGAGATACTAAGTGT+AGG 0.659308 6_4:-89776810 Msa1002960:CDS
TGTCTGGGCCGATAGAGAAG+GGG 0.661460 6_4:-89777041 Msa1002960:CDS
CCGTTGCTCCAGAATCCAGT+CGG 0.662617 6_4:-89776483 Msa1002960:CDS
TACGTTTAAGACGATTTCAG+GGG 0.663223 6_4:-89777292 Msa1002960:CDS
TTAGTCCATCGAATTCTGAG+AGG 0.663493 6_4:-89777434 Msa1002960:CDS
GGAGCTCGATAGGATTTCAG+AGG 0.668955 6_4:-89775546 Msa1002960:CDS
TCAAGTGAGTAATAATGGGG+TGG 0.669097 6_4:-89777702 Msa1002960:five_prime_UTR
ACTTCTATCCAATGGACCTG+AGG 0.670903 6_4:+89777074 None:intergenic
TGAAGGCCCGTCTACATCAG+GGG 0.674161 6_4:-89776098 Msa1002960:CDS
ACACACGCATAATCTGCAGT+GGG 0.674769 6_4:-89776731 Msa1002960:CDS
CCGGACATCTCTAGGAACTG+TGG 0.684188 6_4:-89776787 Msa1002960:CDS
ATATTGGTAAAGCCCATCAG+AGG 0.686480 6_4:+89773452 None:intergenic
AGAGGCATACATGGAAACGG+CGG 0.688502 6_4:-89775780 Msa1002960:CDS
GCTCTGTCAAGGATGACATG+AGG 0.690355 6_4:-89775604 Msa1002960:CDS
GAATCTACAGATGAAACACA+AGG 0.690442 6_4:+89771304 None:intergenic
ATATGGCCTGACTATCATCA+GGG 0.691171 6_4:+89774704 None:intergenic
AAGACAATATGCAAATATGG+GGG 0.695027 6_4:+89771485 None:intergenic
GAGATCCTATCAAAGGACAC+GGG 0.711438 6_4:+89778218 None:intergenic
CCTTTGCAGCCAGTTCCACG+CGG 0.712203 6_4:-89777147 Msa1002960:CDS
TATTTACGCCGATCTCCATG+AGG 0.738087 6_4:+89771630 None:intergenic
AATCTACAGATGAAACACAA+GGG 0.746562 6_4:+89771305 None:intergenic
TGGTCAAGTGAGTAATAATG+GGG 0.749924 6_4:-89777705 Msa1002960:five_prime_UTR
TTCAAAGGTCCAGAACCGCG+TGG 0.762211 6_4:+89777132 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATAATAATAAT+TGG + chr6_4:89771405-89771424 None:intergenic 0.0%
!! CTATATTTAAAAAGAAAAAA+AGG + chr6_4:89771440-89771459 None:intergenic 10.0%
!!! AATATTCTATATCTAAAATT+TGG - chr6_4:89774246-89774265 Msa1002960:intron 10.0%
!!! TTTTTTTATATAATCATCAA+AGG + chr6_4:89775448-89775467 None:intergenic 10.0%
!!! AGTAAATTTTAATTTTTACT+TGG - chr6_4:89776313-89776332 Msa1002960:CDS 10.0%
!! AATAATAATAATTGGAGATT+TGG + chr6_4:89771397-89771416 None:intergenic 15.0%
!!! ATTTTGTGCAATAATAAAAA+TGG - chr6_4:89771962-89771981 Msa1002960:intron 15.0%
!!! TTTTGTGCAATAATAAAAAT+GGG - chr6_4:89771963-89771982 Msa1002960:intron 15.0%
!! AATTCAAAAAAGTCATTTAT+CGG - chr6_4:89773562-89773581 Msa1002960:CDS 15.0%
!! CAAAAATTAAAAAAATGTAC+AGG - chr6_4:89773587-89773606 Msa1002960:intron 15.0%
!!! ATTTTGCAAATTAAAAATGA+GGG - chr6_4:89774101-89774120 Msa1002960:intron 15.0%
!! TTATATAAACTATAGACAAA+GGG + chr6_4:89775000-89775019 None:intergenic 15.0%
!!! ATACTTTTAAAAATACTGAT+TGG + chr6_4:89775321-89775340 None:intergenic 15.0%
!!! TTAAAGATTTTCTTATATCT+AGG + chr6_4:89775380-89775399 None:intergenic 15.0%
!! TTAGTGATCAAAAAAATAAA+AGG + chr6_4:89775473-89775492 None:intergenic 15.0%
!! AAAAAAATTAGGGTTAAAAA+AGG + chr6_4:89775955-89775974 None:intergenic 15.0%
!! AAATTATGAAAAACTTGAAA+GGG + chr6_4:89776342-89776361 None:intergenic 15.0%
!! AAAATTATGAAAAACTTGAA+AGG + chr6_4:89776343-89776362 None:intergenic 15.0%
!!! TTTCTATTCTAAAATTAAGT+TGG - chr6_4:89776465-89776484 Msa1002960:CDS 15.0%
!! ACATAATATCAATACTAATA+AGG - chr6_4:89777757-89777776 Msa1002960:five_prime_UTR 15.0%
!! CATAATATCAATACTAATAA+GGG - chr6_4:89777758-89777777 Msa1002960:five_prime_UTR 15.0%
!!! AAATATTTAATTTAGGATTG+AGG + chr6_4:89777838-89777857 None:intergenic 15.0%
!! AATCCTAAATTAAATATTTG+AGG - chr6_4:89777839-89777858 Msa1002960:five_prime_UTR 15.0%
!!! AAACCTCAAATATTTAATTT+AGG + chr6_4:89777845-89777864 None:intergenic 15.0%
!! AAGGAAAAGAAAAAAAAAAA+AGG + chr6_4:89778025-89778044 None:intergenic 15.0%
!!! AGAAAAAAATGTGATGTTTT+TGG + chr6_4:89771466-89771485 None:intergenic 20.0%
!!! AGGTTATTGTTTAATTTGAT+TGG + chr6_4:89771623-89771642 None:intergenic 20.0%
!! ATTAAACAATAACCTTGAAA+TGG - chr6_4:89771628-89771647 Msa1002960:CDS 20.0%
!! TTAAACAATAACCTTGAAAT+GGG - chr6_4:89771629-89771648 Msa1002960:CDS 20.0%
!! TACTGTTGAAAAATTCATAT+GGG - chr6_4:89771789-89771808 Msa1002960:intron 20.0%
!!! TTTGTATTTGTATTTGTTGA+GGG - chr6_4:89771924-89771943 Msa1002960:intron 20.0%
!!! CATTTTGCAAATTAAAAATG+AGG - chr6_4:89774100-89774119 Msa1002960:intron 20.0%
!!! TGAAGATCTGAAAATTTTTA+TGG - chr6_4:89774281-89774300 Msa1002960:intron 20.0%
!! CTTATATAAACTATAGACAA+AGG + chr6_4:89775001-89775020 None:intergenic 20.0%
!! TGTCTATAGTTTATATAAGT+AGG - chr6_4:89775002-89775021 Msa1002960:intron 20.0%
!! GTCTATAGTTTATATAAGTA+GGG - chr6_4:89775003-89775022 Msa1002960:intron 20.0%
!!! AAATCTTTAAAAAGTAGTTG+AGG - chr6_4:89775390-89775409 Msa1002960:intron 20.0%
!!! AAAAAAAAGCTAAACTTGTT+TGG + chr6_4:89775518-89775537 None:intergenic 20.0%
!! TGTTTACATTGTGAATTAAA+TGG - chr6_4:89775870-89775889 Msa1002960:CDS 20.0%
!! AAAAACAATACAAGTTTAGT+GGG + chr6_4:89775906-89775925 None:intergenic 20.0%
!! AAAAAACAATACAAGTTTAG+TGG + chr6_4:89775907-89775926 None:intergenic 20.0%
!!! TTTTAACCCTAATTTTTTTG+TGG - chr6_4:89775956-89775975 Msa1002960:CDS 20.0%
!!! GTGTTTCAAGTTAAATATAT+CGG - chr6_4:89776011-89776030 Msa1002960:CDS 20.0%
!!! TTTTCATAATTTTCTGTACT+TGG - chr6_4:89776350-89776369 Msa1002960:CDS 20.0%
!!! TTGATGATATAACTCAATTT+TGG + chr6_4:89776690-89776709 None:intergenic 20.0%
!!! TATTAGAATTCCATTTTTAC+TGG - chr6_4:89776938-89776957 Msa1002960:CDS 20.0%
!!! CTTTATCTTTTATCCTATTA+AGG + chr6_4:89777301-89777320 None:intergenic 20.0%
!! CTTAATAGGATAAAAGATAA+AGG - chr6_4:89777299-89777318 Msa1002960:CDS 20.0%
!! AAATCAGAAAGAAAAAAAGA+AGG + chr6_4:89777433-89777452 None:intergenic 20.0%
!!! TTAGTATTGATATTATGTCA+TGG + chr6_4:89777755-89777774 None:intergenic 20.0%
!!! GATTTCTAAAATCAATTTAC+TGG + chr6_4:89778124-89778143 None:intergenic 20.0%
!!! TTAAGAGCTTTCTTATTTAT+GGG + chr6_4:89778217-89778236 None:intergenic 20.0%
!!! TTGTTTAATTTGATTGGTGA+TGG + chr6_4:89771617-89771636 None:intergenic 25.0%
! CTACTGTTGAAAAATTCATA+TGG - chr6_4:89771788-89771807 Msa1002960:intron 25.0%
!! GTTTGTATTTGTATTTGTTG+AGG - chr6_4:89771923-89771942 Msa1002960:intron 25.0%
! GCAATAATAAAAATGGGTAA+CGG - chr6_4:89771969-89771988 Msa1002960:intron 25.0%
! TTGTTTATTGGGATATATGA+CGG - chr6_4:89772914-89772933 Msa1002960:intron 25.0%
! TGTCTAGAAATCTATAAAGA+TGG + chr6_4:89772976-89772995 None:intergenic 25.0%
!! TAGATTTCTAGACAAAGAAT+TGG - chr6_4:89772982-89773001 Msa1002960:intron 25.0%
! ATTTAACAATGAGATAGTTG+AGG - chr6_4:89773186-89773205 Msa1002960:intron 25.0%
! GAAAAGGTAAAAGAAGTTTA+AGG - chr6_4:89773308-89773327 Msa1002960:intron 25.0%
!! TCTTGATAACATGATTGTTA+TGG + chr6_4:89774059-89774078 None:intergenic 25.0%
! ATAGAATATTTGACCATAAC+TGG + chr6_4:89774236-89774255 None:intergenic 25.0%
!!! GTCTGATAAAATTTTAGAAC+AGG + chr6_4:89774321-89774340 None:intergenic 25.0%
!! CAGACTTGAATTTTTGTATT+TGG - chr6_4:89774336-89774355 Msa1002960:intron 25.0%
! CATAAAATAGCAGAAATCTT+TGG + chr6_4:89774651-89774670 None:intergenic 25.0%
!!! CAAAGATTTCTGCTATTTTA+TGG - chr6_4:89774649-89774668 Msa1002960:CDS 25.0%
!!! CAAACATAATTTTGCTATTG+AGG - chr6_4:89775235-89775254 Msa1002960:intron 25.0%
!!! TAATTTTGCTATTGAGGTTT+AGG - chr6_4:89775241-89775260 Msa1002960:intron 25.0%
!! TTTTAATGCCAAAATAAGTC+AGG - chr6_4:89775579-89775598 Msa1002960:CDS 25.0%
! ATCACTATTAGTAGTTGTAT+AGG - chr6_4:89775771-89775790 Msa1002960:CDS 25.0%
! TCATGATTGTATATGATTCT+TGG - chr6_4:89775804-89775823 Msa1002960:CDS 25.0%
! CATGATTGTATATGATTCTT+GGG - chr6_4:89775805-89775824 Msa1002960:CDS 25.0%
!!! TTGTTTTTTGTTGCCTAATT+TGG - chr6_4:89775918-89775937 Msa1002960:CDS 25.0%
! GCTATACCACAAAAAAATTA+GGG + chr6_4:89775965-89775984 None:intergenic 25.0%
! CTGTTACAATAATATCTGAT+GGG + chr6_4:89776275-89776294 None:intergenic 25.0%
! ACTGTTACAATAATATCTGA+TGG + chr6_4:89776276-89776295 None:intergenic 25.0%
! TCTGCTATAATTGAATTTAG+AGG - chr6_4:89776423-89776442 Msa1002960:CDS 25.0%
! CTGCTATAATTGAATTTAGA+GGG - chr6_4:89776424-89776443 Msa1002960:CDS 25.0%
!!! CTTTTAGTTAAACTGAAGTT+TGG - chr6_4:89776552-89776571 Msa1002960:CDS 25.0%
!! TAAATCTTTGGTTTCGATTT+CGG - chr6_4:89776578-89776597 Msa1002960:CDS 25.0%
!!! TAACTCAATTTTGGAAACAA+AGG + chr6_4:89776681-89776700 None:intergenic 25.0%
! GGAATTCTAATAAAGATGTT+CGG + chr6_4:89776930-89776949 None:intergenic 25.0%
!! GCTTTTAATATTCATGGAAA+GGG + chr6_4:89777012-89777031 None:intergenic 25.0%
!! AGCTTTTAATATTCATGGAA+AGG + chr6_4:89777013-89777032 None:intergenic 25.0%
!!! ACATATAGTTTGTTTTCAAC+CGG - chr6_4:89777127-89777146 Msa1002960:CDS 25.0%
! AAATCAGTTGCCAATTATTT+GGG + chr6_4:89777408-89777427 None:intergenic 25.0%
! AAAATCAGTTGCCAATTATT+TGG + chr6_4:89777409-89777428 None:intergenic 25.0%
! ATAAATCATCAGCAATAGAT+AGG + chr6_4:89777575-89777594 None:intergenic 25.0%
! CTATTTGTAACAACAAACAT+AGG - chr6_4:89777675-89777694 Msa1002960:five_prime_UTR 25.0%
! AGAAACACAAGAATCATAAA+TGG + chr6_4:89777704-89777723 None:intergenic 25.0%
! TCAAGACAATATGCAAATAT+GGG + chr6_4:89778083-89778102 None:intergenic 25.0%
! ATCAAGACAATATGCAAATA+TGG + chr6_4:89778084-89778103 None:intergenic 25.0%
! TCTTGATATTGAAACAATCT+TGG - chr6_4:89778097-89778116 Msa1002960:five_prime_UTR 25.0%
! CTTGATATTGAAACAATCTT+GGG - chr6_4:89778098-89778117 Msa1002960:five_prime_UTR 25.0%
! AATTCAAAACAAATTAGGAC+TGG + chr6_4:89778191-89778210 None:intergenic 25.0%
! GGGTAAATTCAAAACAAATT+AGG + chr6_4:89778196-89778215 None:intergenic 25.0%
!! TAAGAGCTTTCTTATTTATG+GGG + chr6_4:89778216-89778235 None:intergenic 25.0%
!! GTTAAGAGCTTTCTTATTTA+TGG + chr6_4:89778218-89778237 None:intergenic 25.0%
CTCTTTCTTTCTTCTTTCTT+GGG + chr6_4:89771320-89771339 None:intergenic 30.0%
TCTCTTTCTTTCTTCTTTCT+TGG + chr6_4:89771321-89771340 None:intergenic 30.0%
! ATAAACACAAGTAGGTTGAA+GGG + chr6_4:89771547-89771566 None:intergenic 30.0%
ATTGAGACATAAACACAAGT+AGG + chr6_4:89771555-89771574 None:intergenic 30.0%
GTTTATGTCTCAATGATTCA+AGG - chr6_4:89771561-89771580 Msa1002960:exon 30.0%
!!! TCTTTTCTGCGTTTTTTTCT+CGG - chr6_4:89771585-89771604 Msa1002960:CDS 30.0%
!! TTTAATTTGATTGGTGATGG+TGG + chr6_4:89771614-89771633 None:intergenic 30.0%
AAACACAAAAACCCATTTCA+AGG + chr6_4:89771643-89771662 None:intergenic 30.0%
AAAACACTCTTTACCTCAAA+GGG + chr6_4:89771749-89771768 None:intergenic 30.0%
AAAAACACTCTTTACCTCAA+AGG + chr6_4:89771750-89771769 None:intergenic 30.0%
!!! GGTTGTTTTGTGTTTTTTTG+AGG - chr6_4:89771810-89771829 Msa1002960:intron 30.0%
!!! TTGTGTTTTTTTGAGGTTGT+TGG - chr6_4:89771817-89771836 Msa1002960:intron 30.0%
!!! TGTGTTTTTTTGAGGTTGTT+GGG - chr6_4:89771818-89771837 Msa1002960:intron 30.0%
ATGGTCAAGTGAGTAATAAT+GGG - chr6_4:89771857-89771876 Msa1002960:intron 30.0%
!!! TTGATGGGTTTTTAGCTAAT+TGG - chr6_4:89771893-89771912 Msa1002960:intron 30.0%
!!! TGATGGGTTTTTAGCTAATT+GGG - chr6_4:89771894-89771913 Msa1002960:intron 30.0%
!! ACACCATTTTTACCATTGAA+TGG + chr6_4:89772023-89772042 None:intergenic 30.0%
!! TGGTAAAAATGGTGTTGATT+TGG - chr6_4:89772028-89772047 Msa1002960:intron 30.0%
!!! TTTTTAGAGCCATTAGATGA+AGG - chr6_4:89772053-89772072 Msa1002960:intron 30.0%
! CACTGATAAATCCAACTTTT+CGG - chr6_4:89772568-89772587 Msa1002960:intron 30.0%
TGTTTATACTCAGCTTCATA+CGG + chr6_4:89772815-89772834 None:intergenic 30.0%
! TAGTTCTTTCTGAAGAACAA+GGG - chr6_4:89772888-89772907 Msa1002960:intron 30.0%
TTTCTAGACAAAGAATTGGA+AGG - chr6_4:89772986-89773005 Msa1002960:intron 30.0%
AAGAATTGGAAGGTTTACTT+TGG - chr6_4:89772996-89773015 Msa1002960:intron 30.0%
AGAATTGGAAGGTTTACTTT+GGG - chr6_4:89772997-89773016 Msa1002960:intron 30.0%
!!! TTTTAAAGTTTCAGGGACTT+CGG + chr6_4:89773056-89773075 None:intergenic 30.0%
GATTGATCCTTGATTAATTC+AGG + chr6_4:89773166-89773185 None:intergenic 30.0%
TACTTCCACAATTAGATAAC+TGG + chr6_4:89773243-89773262 None:intergenic 30.0%
!! AAATCCAGAACTTGCTATAA+TGG - chr6_4:89773822-89773841 Msa1002960:intron 30.0%
!! AATCCAGAACTTGCTATAAT+GGG - chr6_4:89773823-89773842 Msa1002960:intron 30.0%
AGATGTTTATGTCATGAATC+TGG - chr6_4:89773879-89773898 Msa1002960:intron 30.0%
GATGTTTATGTCATGAATCT+GGG - chr6_4:89773880-89773899 Msa1002960:intron 30.0%
TGATTGTTATGGTTGTGAAT+TGG + chr6_4:89774048-89774067 None:intergenic 30.0%
ATTTGCAAAATGATATCTCG+CGG + chr6_4:89774092-89774111 None:intergenic 30.0%
ATTTGATTCACCAATACACA+GGG + chr6_4:89774184-89774203 None:intergenic 30.0%
TATTTGATTCACCAATACAC+AGG + chr6_4:89774185-89774204 None:intergenic 30.0%
TTGAAGATCTAAACCAGTTA+TGG - chr6_4:89774220-89774239 Msa1002960:intron 30.0%
GATCAGAAAAGTTCAATGAT+CGG + chr6_4:89774443-89774462 None:intergenic 30.0%
CACTTAGTAATTCAGTGTAT+AGG + chr6_4:89774479-89774498 None:intergenic 30.0%
AAAAAACATTTGACACTCGA+CGG + chr6_4:89774708-89774727 None:intergenic 30.0%
TTTCACTCGATCATTCAATA+TGG + chr6_4:89774879-89774898 None:intergenic 30.0%
ATATTGAATGATCGAGTGAA+AGG - chr6_4:89774878-89774897 Msa1002960:intron 30.0%
! TTAAAAGTTACCAGAGCATT+TGG - chr6_4:89774905-89774924 Msa1002960:intron 30.0%
CATCAAACTGAATTTCAGAT+GGG + chr6_4:89774973-89774992 None:intergenic 30.0%
! CCTAAGTTTTCTGTATGTTA+TGG + chr6_4:89775052-89775071 None:intergenic 30.0%
CCATAACATACAGAAAACTT+AGG - chr6_4:89775049-89775068 Msa1002960:intron 30.0%
ACAGAAAACTTAGGAAGAAA+AGG - chr6_4:89775058-89775077 Msa1002960:intron 30.0%
! CGTTAAATTTTTCGCCAAAA+TGG - chr6_4:89775104-89775123 Msa1002960:intron 30.0%
! AAATTTTTCGCCAAAATGGT+AGG - chr6_4:89775108-89775127 Msa1002960:intron 30.0%
TAGCTAAACTATATCTCTTG+TGG - chr6_4:89775178-89775197 Msa1002960:intron 30.0%
AGCTAAACTATATCTCTTGT+GGG - chr6_4:89775179-89775198 Msa1002960:intron 30.0%
! TAACGGATGAAATAGTCAAT+GGG - chr6_4:89775209-89775228 Msa1002960:intron 30.0%
ACAAAAAAAGTCAGACCAAA+TGG + chr6_4:89775269-89775288 None:intergenic 30.0%
! TTCTTCTTTAGAAAGAAGAG+AGG + chr6_4:89775292-89775311 None:intergenic 30.0%
! CTTGTTTGGTAGTTGTTAAA+AGG + chr6_4:89775504-89775523 None:intergenic 30.0%
CCAAAATAAGTCAGGTTAAA+CGG - chr6_4:89775587-89775606 Msa1002960:CDS 30.0%
CAAAATAAGTCAGGTTAAAC+GGG - chr6_4:89775588-89775607 Msa1002960:CDS 30.0%
CTTCCCTTTAAACTAGAATA+GGG + chr6_4:89775615-89775634 None:intergenic 30.0%
CTTTATACAAACAAGCTTCT+AGG - chr6_4:89775694-89775713 Msa1002960:CDS 30.0%
AGTAGTTGTATAGGTTCATA+TGG - chr6_4:89775780-89775799 Msa1002960:CDS 30.0%
! TGTATATGATTCTTGGGTTT+TGG - chr6_4:89775811-89775830 Msa1002960:CDS 30.0%
GGCTATACCACAAAAAAATT+AGG + chr6_4:89775966-89775985 None:intergenic 30.0%
CTTCTTCATTGCTGAAATAT+TGG + chr6_4:89776130-89776149 None:intergenic 30.0%
ATATTTCAGCAATGAAGAAG+TGG - chr6_4:89776130-89776149 Msa1002960:CDS 30.0%
CAATAATATCTGATGGGAAT+AGG + chr6_4:89776269-89776288 None:intergenic 30.0%
! GAAGTTTGGAACTAAATCTT+TGG - chr6_4:89776566-89776585 Msa1002960:CDS 30.0%
! AAATCTTTGGTTTCGATTTC+GGG - chr6_4:89776579-89776598 Msa1002960:CDS 30.0%
! ATGGCAGCTTTTAATATTCA+TGG + chr6_4:89777018-89777037 None:intergenic 30.0%
AATATTAAAAGCTGCCATGT+AGG - chr6_4:89777020-89777039 Msa1002960:CDS 30.0%
ATATTAAAAGCTGCCATGTA+GGG - chr6_4:89777021-89777040 Msa1002960:CDS 30.0%
AACAATAAGTCTCTTGTAGA+GGG + chr6_4:89777073-89777092 None:intergenic 30.0%
AAACAATAAGTCTCTTGTAG+AGG + chr6_4:89777074-89777093 None:intergenic 30.0%
TTCTGAATTTGTCATGACAT+AGG - chr6_4:89777097-89777116 Msa1002960:CDS 30.0%
TCTGAATTTGTCATGACATA+GGG - chr6_4:89777098-89777117 Msa1002960:CDS 30.0%
!!! CATATAGTTTGTTTTCAACC+GGG - chr6_4:89777128-89777147 Msa1002960:CDS 30.0%
TAATTTATTACTTTGCCCTC+TGG - chr6_4:89777197-89777216 Msa1002960:CDS 30.0%
AATCAGTTGCCAATTATTTG+GGG + chr6_4:89777407-89777426 None:intergenic 30.0%
! TTTCCTTCTGTTTTCAAAAC+CGG - chr6_4:89777452-89777471 Msa1002960:CDS 30.0%
AGGACTGCTCTTATATTATT+AGG + chr6_4:89777555-89777574 None:intergenic 30.0%
GACAATGTTTATTGTTACGA+AGG + chr6_4:89777733-89777752 None:intergenic 30.0%
!! TTAACAGAGAAGCACTTAAA+AGG + chr6_4:89778044-89778063 None:intergenic 30.0%
! AGTGCTTCTCTGTTAATTTT+TGG - chr6_4:89778048-89778067 Msa1002960:five_prime_UTR 30.0%
!!! TTCTCTGTTAATTTTTGGCT+AGG - chr6_4:89778053-89778072 Msa1002960:five_prime_UTR 30.0%
AAGACAATATGCAAATATGG+GGG + chr6_4:89778081-89778100 None:intergenic 30.0%
CAAGACAATATGCAAATATG+GGG + chr6_4:89778082-89778101 None:intergenic 30.0%
GAACAAAGATTGAGACAAAG+AGG + chr6_4:89771492-89771511 None:intergenic 35.0%
! TAAACACAAGTAGGTTGAAG+GGG + chr6_4:89771546-89771565 None:intergenic 35.0%
! CATAAACACAAGTAGGTTGA+AGG + chr6_4:89771548-89771567 None:intergenic 35.0%
CATGGTCAAGTGAGTAATAA+TGG - chr6_4:89771856-89771875 Msa1002960:intron 35.0%
TGGTCAAGTGAGTAATAATG+GGG - chr6_4:89771858-89771877 Msa1002960:intron 35.0%
! AGTAATAATGGGGTGGTTAT+GGG - chr6_4:89771868-89771887 Msa1002960:intron 35.0%
!! TGTATTTGTTGAGGGTTTTG+AGG - chr6_4:89771932-89771951 Msa1002960:intron 35.0%
! GTGCCATTCAATGGTAAAAA+TGG - chr6_4:89772017-89772036 Msa1002960:intron 35.0%
TGTCCTAAACCTTCATCTAA+TGG + chr6_4:89772065-89772084 None:intergenic 35.0%
!! ATCAAGAGTGCTTGAATCAA+CGG + chr6_4:89772159-89772178 None:intergenic 35.0%
TTCGTTTAGGCATGATAGTA+TGG - chr6_4:89772196-89772215 Msa1002960:intron 35.0%
! ATGGAGCATTCTAATTCTTC+TGG - chr6_4:89772215-89772234 Msa1002960:intron 35.0%
TCGTCTTAAACGTAGTTTCA+GGG + chr6_4:89772265-89772284 None:intergenic 35.0%
ATCGTCTTAAACGTAGTTTC+AGG + chr6_4:89772266-89772285 None:intergenic 35.0%
! ACTACGTTTAAGACGATTTC+AGG - chr6_4:89772269-89772288 Msa1002960:intron 35.0%
! CTACGTTTAAGACGATTTCA+GGG - chr6_4:89772270-89772289 Msa1002960:intron 35.0%
! TACGTTTAAGACGATTTCAG+GGG - chr6_4:89772271-89772290 Msa1002960:intron 35.0%
CCAGACATAAAACCATTCAA+AGG + chr6_4:89772449-89772468 None:intergenic 35.0%
!!! CCTTTGAATGGTTTTATGTC+TGG - chr6_4:89772446-89772465 Msa1002960:intron 35.0%
GATTTATCAGTGTCATCAAG+AGG + chr6_4:89772560-89772579 None:intergenic 35.0%
! GTAGTTCTTTCTGAAGAACA+AGG - chr6_4:89772887-89772906 Msa1002960:intron 35.0%
AACAAGGGTGGTTGTTTATT+GGG - chr6_4:89772903-89772922 Msa1002960:intron 35.0%
ATCAAAAAATCAGGTGCATC+TGG + chr6_4:89772950-89772969 None:intergenic 35.0%
AGATGGCTCATCAAAAAATC+AGG + chr6_4:89772959-89772978 None:intergenic 35.0%
! TTTAAAGTTTCAGGGACTTC+GGG + chr6_4:89773055-89773074 None:intergenic 35.0%
!!! CGGTAGCTTTTAAAGTTTCA+GGG + chr6_4:89773063-89773082 None:intergenic 35.0%
!!! ACGGTAGCTTTTAAAGTTTC+AGG + chr6_4:89773064-89773083 None:intergenic 35.0%
!!! GAATGTTTTGAAGCTTGTTC+TGG - chr6_4:89773139-89773158 Msa1002960:intron 35.0%
TTCTGGTCCTGAATTAATCA+AGG - chr6_4:89773156-89773175 Msa1002960:intron 35.0%
CAATGAGATAGTTGAGGAAA+AGG - chr6_4:89773192-89773211 Msa1002960:intron 35.0%
GAACACCAGTTATCTAATTG+TGG - chr6_4:89773235-89773254 Msa1002960:intron 35.0%
GTTCAACATGAAAAGTTGAC+TGG - chr6_4:89773286-89773305 Msa1002960:intron 35.0%
CATGAAAAGTTGACTGGAAA+AGG - chr6_4:89773292-89773311 Msa1002960:intron 35.0%
GCTTTATGAGCTACTTCAAA+TGG - chr6_4:89773330-89773349 Msa1002960:intron 35.0%
AGCTACTTCAAATGGAATCT+TGG - chr6_4:89773338-89773357 Msa1002960:CDS 35.0%
GCTACTTCAAATGGAATCTT+GGG - chr6_4:89773339-89773358 Msa1002960:CDS 35.0%
!! TCATCTAGTATTGACTCCAT+CGG + chr6_4:89773391-89773410 None:intergenic 35.0%
! TTTTTCCTGCTTCTGTATCA+AGG - chr6_4:89773536-89773555 Msa1002960:CDS 35.0%
AGTTTCTTACACAAGGACTT+TGG + chr6_4:89773616-89773635 None:intergenic 35.0%
AGGAAAGAGTTTCTTACACA+AGG + chr6_4:89773623-89773642 None:intergenic 35.0%
TGTGTAAGAAACTCTTTCCT+TGG - chr6_4:89773623-89773642 Msa1002960:intron 35.0%
TCTTTCCTTGGAGTTATGAT+TGG - chr6_4:89773635-89773654 Msa1002960:intron 35.0%
TTGGAGTTATGATTGGCATA+GGG - chr6_4:89773642-89773661 Msa1002960:intron 35.0%
GAGAAAATATTAGAAGCCTC+TGG - chr6_4:89773682-89773701 Msa1002960:intron 35.0%
!! TAACGCAGTTTTAACAGCAA+TGG - chr6_4:89773738-89773757 Msa1002960:intron 35.0%
!! ATCCAGAACTTGCTATAATG+GGG - chr6_4:89773824-89773843 Msa1002960:intron 35.0%
! TGTTCTAGTGATGTTGATGA+AGG - chr6_4:89773852-89773871 Msa1002960:intron 35.0%
!! TTGTATTTGGTTCTGCTTCT+TGG - chr6_4:89774349-89774368 Msa1002960:intron 35.0%
!! TTGGTGATTTTGCATTCATC+AGG - chr6_4:89774576-89774595 Msa1002960:intron 35.0%
AAAAACATTTGACACTCGAC+GGG + chr6_4:89774707-89774726 None:intergenic 35.0%
TTTCAATTTCTGTTTCCTGC+AGG - chr6_4:89774811-89774830 Msa1002960:intron 35.0%
TTATTCTTGAAACTTCCTGC+AGG + chr6_4:89774829-89774848 None:intergenic 35.0%
GCATCAAACTGAATTTCAGA+TGG + chr6_4:89774974-89774993 None:intergenic 35.0%
! CCAGTGATTTGTATGATTCA+AGG + chr6_4:89775141-89775160 None:intergenic 35.0%
CCTTGAATCATACAAATCAC+TGG - chr6_4:89775138-89775157 Msa1002960:intron 35.0%
!! GTAACGGATGAAATAGTCAA+TGG - chr6_4:89775208-89775227 Msa1002960:intron 35.0%
AACGGATGAAATAGTCAATG+GGG - chr6_4:89775210-89775229 Msa1002960:intron 35.0%
AAAAGTAGTTGAGGTTTGAG+AGG - chr6_4:89775399-89775418 Msa1002960:intron 35.0%
! AGGAGCTTTTCAAAACAAGT+AGG - chr6_4:89775419-89775438 Msa1002960:intron 35.0%
! CCGTTTAACCTGACTTATTT+TGG + chr6_4:89775590-89775609 None:intergenic 35.0%
!! GGACCCTATTCTAGTTTAAA+GGG - chr6_4:89775609-89775628 Msa1002960:CDS 35.0%
CCTTCCCTTTAAACTAGAAT+AGG + chr6_4:89775616-89775635 None:intergenic 35.0%
!! CCTATTCTAGTTTAAAGGGA+AGG - chr6_4:89775613-89775632 Msa1002960:CDS 35.0%
TCGATTATAGCGTAGATCAT+TGG - chr6_4:89775640-89775659 Msa1002960:CDS 35.0%
!!! TGATTCTTGGGTTTTGGAAT+AGG - chr6_4:89775817-89775836 Msa1002960:CDS 35.0%
AGTAGAGCTTCGTTAAAAGA+CGG + chr6_4:89775987-89776006 None:intergenic 35.0%
TTCATGGAAAATGTTCCAGA+AGG - chr6_4:89776170-89776189 Msa1002960:CDS 35.0%
AATATCTGATGGGAATAGGA+AGG + chr6_4:89776265-89776284 None:intergenic 35.0%
!!! GTGTATGTTTAGTTTTGCAG+TGG + chr6_4:89776833-89776852 None:intergenic 35.0%
GTAGTAGAAACTGGTATCTA+TGG - chr6_4:89777158-89777177 Msa1002960:CDS 35.0%
GATGATGATTCTCAAAACAG+AGG - chr6_4:89777222-89777241 Msa1002960:CDS 35.0%
CTATTAAGGAACTACCATTG+TGG + chr6_4:89777287-89777306 None:intergenic 35.0%
CACAATGGTAGTTCCTTAAT+AGG - chr6_4:89777285-89777304 Msa1002960:CDS 35.0%
ATATCCACTCCCCAAATAAT+TGG - chr6_4:89777395-89777414 Msa1002960:CDS 35.0%
CAACCAGCAGTTATGTTATT+AGG + chr6_4:89777478-89777497 None:intergenic 35.0%
! ATAACATAACTGCTGGTTGT+TGG - chr6_4:89777479-89777498 Msa1002960:CDS 35.0%
! GGTTGTTGGCTAATAACATA+AGG - chr6_4:89777493-89777512 Msa1002960:CDS 35.0%
AGAGAAGAATGCATACAGTT+AGG - chr6_4:89777602-89777621 Msa1002960:exon 35.0%
! AGATTTGACCAATCAAGTTG+TGG - chr6_4:89777625-89777644 Msa1002960:five_prime_UTR 35.0%
CAAATAGTAACTACCTACTC+CGG + chr6_4:89777662-89777681 None:intergenic 35.0%
GAAAATCCATTCCTGCATAT+TGG + chr6_4:89777896-89777915 None:intergenic 35.0%
TTGATATTCCTCATGGAGAT+CGG - chr6_4:89777925-89777944 Msa1002960:five_prime_UTR 35.0%
TCAAAACAAATTAGGACTGG+TGG + chr6_4:89778188-89778207 None:intergenic 35.0%
TGAGATCCTATCAAAGGACA+CGG + chr6_4:89771349-89771368 None:intergenic 40.0%
!! GGGAATTTGATGATGATGCA+TGG - chr6_4:89771838-89771857 Msa1002960:intron 40.0%
! TCAAGTGAGTAATAATGGGG+TGG - chr6_4:89771861-89771880 Msa1002960:intron 40.0%
! GAGTAATAATGGGGTGGTTA+TGG - chr6_4:89771867-89771886 Msa1002960:intron 40.0%
! GTAATAATGGGGTGGTTATG+GGG - chr6_4:89771869-89771888 Msa1002960:intron 40.0%
!!! TGTTGAGGGTTTTGAGGTTT+AGG - chr6_4:89771938-89771957 Msa1002960:intron 40.0%
! GGTTGTTTAGTGCCATTCAA+TGG - chr6_4:89772008-89772027 Msa1002960:intron 40.0%
GAGCCATTAGATGAAGGTTT+AGG - chr6_4:89772059-89772078 Msa1002960:intron 40.0%
GCAGGAGATTCAAACATAGT+TGG + chr6_4:89772107-89772126 None:intergenic 40.0%
!! GAATTCGATGGACTAATAGC+AGG + chr6_4:89772125-89772144 None:intergenic 40.0%
TTAGTCCATCGAATTCTGAG+AGG - chr6_4:89772129-89772148 Msa1002960:intron 40.0%
GTAAACCTCTCAGAATTCGA+TGG + chr6_4:89772137-89772156 None:intergenic 40.0%
!! CTTGATTCTGAAACCTTGAG+TGG - chr6_4:89772173-89772192 Msa1002960:intron 40.0%
AAACCTTGAGTGGTTCGTTT+AGG - chr6_4:89772183-89772202 Msa1002960:intron 40.0%
!! TTCTTCTGGTTTACACAAGC+AGG - chr6_4:89772229-89772248 Msa1002960:intron 40.0%
!! TCTTCTGGTTTACACAAGCA+GGG - chr6_4:89772230-89772249 Msa1002960:intron 40.0%
CAAGAAATCACCAGCAAACA+TGG + chr6_4:89772351-89772370 None:intergenic 40.0%
! CATGTTTGCTGGTGATTTCT+TGG - chr6_4:89772349-89772368 Msa1002960:intron 40.0%
!!! TGGTTTTATGTCTGGTCCTT+TGG - chr6_4:89772454-89772473 Msa1002960:intron 40.0%
AAACCACCACTTCTATCCAA+TGG + chr6_4:89772500-89772519 None:intergenic 40.0%
!! CATCTCATGAGAAGTGTTAG+TGG - chr6_4:89772629-89772648 Msa1002960:intron 40.0%
AACATTCTCTAAGCACTCCA+TGG - chr6_4:89772676-89772695 Msa1002960:intron 40.0%
ACATTCTCTAAGCACTCCAT+GGG - chr6_4:89772677-89772696 Msa1002960:intron 40.0%
GCAAAGGTTGTTCTTTCAAC+CGG - chr6_4:89772712-89772731 Msa1002960:intron 40.0%
CTACACTTAGTATCTCTGGA+AGG + chr6_4:89772755-89772774 None:intergenic 40.0%
CTTCCAGAGATACTAAGTGT+AGG - chr6_4:89772753-89772772 Msa1002960:intron 40.0%
TACATGAACCCTATCTTCAC+CGG + chr6_4:89772870-89772889 None:intergenic 40.0%
! TTCTTTCTGAAGAACAAGGG+TGG - chr6_4:89772891-89772910 Msa1002960:intron 40.0%
GAACAAGGGTGGTTGTTTAT+TGG - chr6_4:89772902-89772921 Msa1002960:intron 40.0%
!! GGGATATATGACGGTTTTAG+TGG - chr6_4:89772923-89772942 Msa1002960:intron 40.0%
TAATGATTCCTCAGTTCCGA+TGG - chr6_4:89773372-89773391 Msa1002960:CDS 40.0%
TCGTCTACTGTAAGAGAAGA+TGG - chr6_4:89773427-89773446 Msa1002960:CDS 40.0%
!! AGAAGATGGCTCTAAACATC+AGG - chr6_4:89773441-89773460 Msa1002960:CDS 40.0%
CTATGCCAATCATAACTCCA+AGG + chr6_4:89773643-89773662 None:intergenic 40.0%
CTTGGAGTTATGATTGGCAT+AGG - chr6_4:89773641-89773660 Msa1002960:intron 40.0%
! GCATTTTCTAATAGGTCCAG+AGG + chr6_4:89773701-89773720 None:intergenic 40.0%
CTGGACCTATTAGAAAATGC+AGG - chr6_4:89773701-89773720 Msa1002960:intron 40.0%
! CCAGACCTGCATTTTCTAAT+AGG + chr6_4:89773709-89773728 None:intergenic 40.0%
CCTATTAGAAAATGCAGGTC+TGG - chr6_4:89773706-89773725 Msa1002960:intron 40.0%
AGCTCTTGAAAGAACAGAAG+AGG - chr6_4:89773765-89773784 Msa1002960:intron 40.0%
! AAGAACAGAAGAGGCATACA+TGG - chr6_4:89773774-89773793 Msa1002960:intron 40.0%
! AGAAGAGGCATACATGGAAA+CGG - chr6_4:89773780-89773799 Msa1002960:intron 40.0%
TGACAGAGCTTGAATTAGGA+TGG + chr6_4:89773948-89773967 None:intergenic 40.0%
TCCTAATTCAAGCTCTGTCA+AGG - chr6_4:89773948-89773967 Msa1002960:intron 40.0%
TCCTTGACAGAGCTTGAATT+AGG + chr6_4:89773952-89773971 None:intergenic 40.0%
TAGAGAGTCATTAGTACGCA+TGG - chr6_4:89773996-89774015 Msa1002960:intron 40.0%
GGAACATACCTCTTCAATAC+TGG + chr6_4:89774154-89774173 None:intergenic 40.0%
TGCACAACAGAATGATCTGT+TGG - chr6_4:89774557-89774576 Msa1002960:intron 40.0%
ATATGGCCTGACTATCATCA+GGG + chr6_4:89774862-89774881 None:intergenic 40.0%
AATATGGCCTGACTATCATC+AGG + chr6_4:89774863-89774882 None:intergenic 40.0%
ATCATACAAATCACTGGTCC+TGG - chr6_4:89775144-89775163 Msa1002960:intron 40.0%
TCATACAAATCACTGGTCCT+GGG - chr6_4:89775145-89775164 Msa1002960:intron 40.0%
ATTGAGGTTTAGGCTCCATT+TGG - chr6_4:89775251-89775270 Msa1002960:intron 40.0%
!! GGGACCCTATTCTAGTTTAA+AGG - chr6_4:89775608-89775627 Msa1002960:CDS 40.0%
AGCGTAGATCATTGGATTTG+CGG - chr6_4:89775648-89775667 Msa1002960:CDS 40.0%
TGCCTAATTTGGAAACACTG+AGG - chr6_4:89775929-89775948 Msa1002960:CDS 40.0%
! TTTTAACGAAGCTCTACTCG+AGG - chr6_4:89775989-89776008 Msa1002960:CDS 40.0%
! TTCTTCAAGTGACCGATTCT+TGG - chr6_4:89776082-89776101 Msa1002960:CDS 40.0%
ATATTGGTAAAGCCCATCAG+AGG + chr6_4:89776114-89776133 None:intergenic 40.0%
TTCCATGAACCATGTGACAT+GGG + chr6_4:89776159-89776178 None:intergenic 40.0%
TTTCCATGAACCATGTGACA+TGG + chr6_4:89776160-89776179 None:intergenic 40.0%
!! TCTGCAATAAGGTATTGTGC+AGG + chr6_4:89776200-89776219 None:intergenic 40.0%
AGAAGAGAAGCTCTGCAATA+AGG + chr6_4:89776211-89776230 None:intergenic 40.0%
TTCTGCGCTGCTAAAAAGAA+TGG - chr6_4:89776227-89776246 Msa1002960:CDS 40.0%
! AACCGATTCTAACCTGAAGT+TGG - chr6_4:89776646-89776665 Msa1002960:CDS 40.0%
! ACCGATTCTAACCTGAAGTT+GGG - chr6_4:89776647-89776666 Msa1002960:CDS 40.0%
! TCCCAACTTCAGGTTAGAAT+CGG + chr6_4:89776651-89776670 None:intergenic 40.0%
AATTACTGGATGACCCTACA+TGG + chr6_4:89777037-89777056 None:intergenic 40.0%
TAAGTCTCTTGTAGAGGGAT+TGG + chr6_4:89777068-89777087 None:intergenic 40.0%
!! GTTTGTTTTCAACCGGGTTA+TGG - chr6_4:89777134-89777153 Msa1002960:CDS 40.0%
GTTTCTACTACACCATAACC+CGG + chr6_4:89777149-89777168 None:intergenic 40.0%
GGTTATGGTGTAGTAGAAAC+TGG - chr6_4:89777149-89777168 Msa1002960:CDS 40.0%
GAGAATCATCATCATCCAGA+GGG + chr6_4:89777215-89777234 None:intergenic 40.0%
TGAGAATCATCATCATCCAG+AGG + chr6_4:89777216-89777235 None:intergenic 40.0%
!! GACTCTTGAACTTCTAGGAT+AGG + chr6_4:89777328-89777347 None:intergenic 40.0%
TCCTAGAAGTTCAAGAGTCT+TGG - chr6_4:89777329-89777348 Msa1002960:CDS 40.0%
ACCAAGACTCTTGAACTTCT+AGG + chr6_4:89777333-89777352 None:intergenic 40.0%
! GAGTGGATATTGATTGAGAG+AGG + chr6_4:89777385-89777404 None:intergenic 40.0%
CAGCAGTTATGTTATTAGGC+CGG + chr6_4:89777474-89777493 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTT+AGG - chr6_4:89777517-89777536 Msa1002960:CDS 40.0%
ATCCATTCCTGCATATTGGA+GGG + chr6_4:89777892-89777911 None:intergenic 40.0%
AATCCATTCCTGCATATTGG+AGG + chr6_4:89777893-89777912 None:intergenic 40.0%
GAACTGCTTGATATTCCTCA+TGG - chr6_4:89777918-89777937 Msa1002960:five_prime_UTR 40.0%
TCACGATGATGTATCTGTCA+TGG - chr6_4:89777956-89777975 Msa1002960:five_prime_UTR 40.0%
ATCTGTCATGGTCGTTTCTT+TGG - chr6_4:89777968-89777987 Msa1002960:five_prime_UTR 40.0%
! TTTCTTTGGAGGGAAGGATT+TGG - chr6_4:89777982-89778001 Msa1002960:five_prime_UTR 40.0%
! GGCAGCAGTAAAGGATTTTA+GGG + chr6_4:89778240-89778259 None:intergenic 40.0%
GAGATCCTATCAAAGGACAC+GGG + chr6_4:89771348-89771367 None:intergenic 45.0%
! CAGCGTTGAGATCCTATCAA+AGG + chr6_4:89771355-89771374 None:intergenic 45.0%
TCCTTTGATCTGACCCTTTG+AGG - chr6_4:89771733-89771752 Msa1002960:intron 45.0%
ACCTCAAAGGGTCAGATCAA+AGG + chr6_4:89771737-89771756 None:intergenic 45.0%
ATGCCTAAACGAACCACTCA+AGG + chr6_4:89772189-89772208 None:intergenic 45.0%
! TGTCCTTGCTGTGGAAACAT+TGG + chr6_4:89772309-89772328 None:intergenic 45.0%
AATGTTTCCACAGCAAGGAC+AGG - chr6_4:89772308-89772327 Msa1002960:intron 45.0%
ACTTCTATCCAATGGACCTG+AGG + chr6_4:89772492-89772511 None:intergenic 45.0%
TCAGGTCCATTGGATAGAAG+TGG - chr6_4:89772491-89772510 Msa1002960:intron 45.0%
AGAAGTGGTGGTTTCATGTC+TGG - chr6_4:89772506-89772525 Msa1002960:intron 45.0%
GAAGTGGTGGTTTCATGTCT+GGG - chr6_4:89772507-89772526 Msa1002960:intron 45.0%
GACATAACCCCCTTCTCTAT+CGG + chr6_4:89772533-89772552 None:intergenic 45.0%
ATAGAGAAGGGGGTTATGTC+AGG - chr6_4:89772533-89772552 Msa1002960:intron 45.0%
CTCATGAGATGTTGTAGACG+CGG + chr6_4:89772620-89772639 None:intergenic 45.0%
!! CATGAGAAGTGTTAGTGGAC+CGG - chr6_4:89772634-89772653 Msa1002960:intron 45.0%
CGAGAAAACGTGTTCTTCAC+CGG + chr6_4:89772656-89772675 None:intergenic 45.0%
CTTTCAACCGGTTACTCAGT+TGG - chr6_4:89772724-89772743 Msa1002960:intron 45.0%
CAGAGATACTAAGTGTAGGC+CGG - chr6_4:89772757-89772776 Msa1002960:intron 45.0%
AACACACGCATAATCTGCAG+TGG - chr6_4:89772831-89772850 Msa1002960:intron 45.0%
ACACACGCATAATCTGCAGT+GGG - chr6_4:89772832-89772851 Msa1002960:intron 45.0%
TCGGGTTTAAGGGAATCTAC+AGG + chr6_4:89773037-89773056 None:intergenic 45.0%
! TTCAGGGACTTCGGGTTTAA+GGG + chr6_4:89773047-89773066 None:intergenic 45.0%
! TTTCAGGGACTTCGGGTTTA+AGG + chr6_4:89773048-89773067 None:intergenic 45.0%
!! TATTGACTCCATCGGAACTG+AGG + chr6_4:89773383-89773402 None:intergenic 45.0%
TCTCTTACAGTAGACGAGCA+AGG + chr6_4:89773424-89773443 None:intergenic 45.0%
!! GGCTCTAAACATCAGGATGA+AGG - chr6_4:89773448-89773467 Msa1002960:CDS 45.0%
! CATTTTCCCCTGATGTAGAC+GGG + chr6_4:89773474-89773493 None:intergenic 45.0%
! CCATTTTCCCCTGATGTAGA+CGG + chr6_4:89773475-89773494 None:intergenic 45.0%
!! GAAAATGGAAGCACTGGGTT+TGG - chr6_4:89773487-89773506 Msa1002960:CDS 45.0%
! TGGGTTTGGTTCAACCAACA+AGG - chr6_4:89773501-89773520 Msa1002960:CDS 45.0%
TTCTGCCTTGATACAGAAGC+AGG + chr6_4:89773544-89773563 None:intergenic 45.0%
GACCCCATTATAGCAAGTTC+TGG + chr6_4:89773829-89773848 None:intergenic 45.0%
! GGGAGATAGTCGTGTGATTT+TGG - chr6_4:89773900-89773919 Msa1002960:intron 45.0%
TGATTCACCAATACACAGGG+AGG + chr6_4:89774181-89774200 None:intergenic 45.0%
AGAACACCCTGATGATAGTC+AGG - chr6_4:89774853-89774872 Msa1002960:intron 45.0%
! AGGTGCACTTCCTACCATTT+TGG + chr6_4:89775121-89775140 None:intergenic 45.0%
TTAGCTATCACACATGACCC+AGG + chr6_4:89775165-89775184 None:intergenic 45.0%
CTCTTGTGGGTGTGTAGTAA+CGG - chr6_4:89775192-89775211 Msa1002960:intron 45.0%
GCGTAGATCATTGGATTTGC+GGG - chr6_4:89775649-89775668 Msa1002960:CDS 45.0%
GGCCTCAGTGTTTCCAAATT+AGG + chr6_4:89775934-89775953 None:intergenic 45.0%
! GAAGGAGTGCAACTTAGGTA+AGG + chr6_4:89776044-89776063 None:intergenic 45.0%
! GTACAGAAGGAGTGCAACTT+AGG + chr6_4:89776049-89776068 None:intergenic 45.0%
AGTCGATGGTGAAGTACAGA+AGG + chr6_4:89776062-89776081 None:intergenic 45.0%
GGTCACTTGAAGAAAGTCGA+TGG + chr6_4:89776076-89776095 None:intergenic 45.0%
!! CAGAGGAGAGTACCAAGAAT+CGG + chr6_4:89776097-89776116 None:intergenic 45.0%
TTCTTGGTACTCTCCTCTGA+TGG - chr6_4:89776098-89776117 Msa1002960:CDS 45.0%
TCTTGGTACTCTCCTCTGAT+GGG - chr6_4:89776099-89776118 Msa1002960:CDS 45.0%
! TCTTTGGTTTCGATTTCGGG+AGG - chr6_4:89776582-89776601 Msa1002960:CDS 45.0%
! CTTTGGTTTCGATTTCGGGA+GGG - chr6_4:89776583-89776602 Msa1002960:CDS 45.0%
! TTTGGTTTCGATTTCGGGAG+GGG - chr6_4:89776584-89776603 Msa1002960:CDS 45.0%
! CTTCAGGTTAGAATCGGTTC+TGG + chr6_4:89776645-89776664 None:intergenic 45.0%
!! AGGCTCTAAATCCCAACTTC+AGG + chr6_4:89776661-89776680 None:intergenic 45.0%
CACGCACACACCAGTAAAAA+TGG + chr6_4:89776951-89776970 None:intergenic 45.0%
GATTGGACGGGATGAATTAC+TGG + chr6_4:89777051-89777070 None:intergenic 45.0%
TCTCTTGTAGAGGGATTGGA+CGG + chr6_4:89777064-89777083 None:intergenic 45.0%
! AGCACTTAGAGCATCCACAA+TGG - chr6_4:89777270-89777289 Msa1002960:CDS 45.0%
TCTTCCCCCCAAGAATTAGA+GGG - chr6_4:89777354-89777373 Msa1002960:CDS 45.0%
GTTGCCAATTATTTGGGGAG+TGG + chr6_4:89777402-89777421 None:intergenic 45.0%
!!! AGGCCGGTTTTGAAAACAGA+AGG + chr6_4:89777458-89777477 None:intergenic 45.0%
CGGCCTAATAACATAACTGC+TGG - chr6_4:89777472-89777491 Msa1002960:CDS 45.0%
AGGCAGCAGTAACTACCTAA+GGG + chr6_4:89777535-89777554 None:intergenic 45.0%
TAGGCAGCAGTAACTACCTA+AGG + chr6_4:89777536-89777555 None:intergenic 45.0%
ATGGTCAGCCACAACTTGAT+TGG + chr6_4:89777636-89777655 None:intergenic 45.0%
TAACTACCTACTCCGGTGTA+TGG + chr6_4:89777655-89777674 None:intergenic 45.0%
TGACTTTCCCTCCAATATGC+AGG - chr6_4:89777882-89777901 Msa1002960:five_prime_UTR 45.0%
TTCCCTCCAATATGCAGGAA+TGG - chr6_4:89777887-89777906 Msa1002960:five_prime_UTR 45.0%
TATTTACGCCGATCTCCATG+AGG + chr6_4:89777936-89777955 None:intergenic 45.0%
TGTCATGGTCGTTTCTTTGG+AGG - chr6_4:89777971-89777990 Msa1002960:five_prime_UTR 45.0%
GTCATGGTCGTTTCTTTGGA+GGG - chr6_4:89777972-89777991 Msa1002960:five_prime_UTR 45.0%
GGGAAGGATTTGGAGATCAT+CGG - chr6_4:89777992-89778011 Msa1002960:five_prime_UTR 45.0%
GGAAGGATTTGGAGATCATC+GGG - chr6_4:89777993-89778012 Msa1002960:five_prime_UTR 45.0%
! GGGCAGCAGTAAAGGATTTT+AGG + chr6_4:89778241-89778260 None:intergenic 45.0%
AAACACAAGGGCAGCAGTAA+AGG + chr6_4:89778249-89778268 None:intergenic 45.0%
TCCTATCAAAGGACACGGGA+CGG + chr6_4:89771344-89771363 None:intergenic 50.0%
! CAAGTAGGTTGAAGGGGACA+GGG + chr6_4:89771540-89771559 None:intergenic 50.0%
! ACAAGTAGGTTGAAGGGGAC+AGG + chr6_4:89771541-89771560 None:intergenic 50.0%
GGGTGGTTATGGGGTTTGAT+GGG - chr6_4:89771878-89771897 Msa1002960:intron 50.0%
AACGGCACTTCTCGTGTTGT+TGG - chr6_4:89771987-89772006 Msa1002960:intron 50.0%
GTGCCAATGTTTCCACAGCA+AGG - chr6_4:89772303-89772322 Msa1002960:intron 50.0%
! AACCAGAGTGCCATGTTTGC+TGG - chr6_4:89772338-89772357 Msa1002960:intron 50.0%
! GAACCTGCTGCTTCGTTTGA+GGG - chr6_4:89772371-89772390 Msa1002960:intron 50.0%
! ATGTCTGGTCCTTTGGAGAG+AGG - chr6_4:89772461-89772480 Msa1002960:intron 50.0%
GGTCCATTGGATAGAAGTGG+TGG - chr6_4:89772494-89772513 Msa1002960:intron 50.0%
ATGTCTGGGCCGATAGAGAA+GGG - chr6_4:89772521-89772540 Msa1002960:intron 50.0%
TTCTCTAAGCACTCCATGGG+TGG - chr6_4:89772680-89772699 Msa1002960:intron 50.0%
TTGCATCCAACTTCCACCCA+TGG + chr6_4:89772696-89772715 None:intergenic 50.0%
TGGGTGGAAGTTGGATGCAA+AGG - chr6_4:89772696-89772715 Msa1002960:intron 50.0%
AACCGGTTACTCAGTTGGCA+TGG - chr6_4:89772729-89772748 Msa1002960:intron 50.0%
CGGCCTACACTTAGTATCTC+TGG + chr6_4:89772759-89772778 None:intergenic 50.0%
CCACAGTTCCTAGAGATGTC+CGG + chr6_4:89772779-89772798 None:intergenic 50.0%
! CATAATCTGCAGTGGGCTCA+GGG - chr6_4:89772839-89772858 Msa1002960:intron 50.0%
ATTTCCGACCGACTGGATTC+TGG + chr6_4:89773091-89773110 None:intergenic 50.0%
ATCAGACATTTCCGACCGAC+TGG + chr6_4:89773098-89773117 None:intergenic 50.0%
ATGAAGGCCCGTCTACATCA+GGG - chr6_4:89773464-89773483 Msa1002960:CDS 50.0%
CCGTCTACATCAGGGGAAAA+TGG - chr6_4:89773472-89773491 Msa1002960:CDS 50.0%
! TCAGGGGAAAATGGAAGCAC+TGG - chr6_4:89773481-89773500 Msa1002960:CDS 50.0%
!! CAGGGGAAAATGGAAGCACT+GGG - chr6_4:89773482-89773501 Msa1002960:CDS 50.0%
AACAGCTTCGTGCTCCTTGT+TGG + chr6_4:89773518-89773537 None:intergenic 50.0%
! AGAGGCATACATGGAAACGG+CGG - chr6_4:89773783-89773802 Msa1002960:intron 50.0%
GGAAACGGCGGAGAATAATC+TGG - chr6_4:89773795-89773814 Msa1002960:intron 50.0%
GCTCTGTCAAGGATGACATG+AGG - chr6_4:89773959-89773978 Msa1002960:intron 50.0%
TAGTACGCATGGAGCTCGAT+AGG - chr6_4:89774007-89774026 Msa1002960:intron 50.0%
GGAGCTCGATAGGATTTCAG+AGG - chr6_4:89774017-89774036 Msa1002960:intron 50.0%
! CCTCTTCAATACTGGTGCTG+TGG + chr6_4:89774146-89774165 None:intergenic 50.0%
! CCACAGCACCAGTATTGAAG+AGG - chr6_4:89774143-89774162 Msa1002960:intron 50.0%
TCACCAATACACAGGGAGGA+GGG + chr6_4:89774177-89774196 None:intergenic 50.0%
TTCACCAATACACAGGGAGG+AGG + chr6_4:89774178-89774197 None:intergenic 50.0%
! TTACCAGAGCATTTGGCGCT+GGG - chr6_4:89774912-89774931 Msa1002960:intron 50.0%
AAGTGGTTGCCCATGTCACA+TGG - chr6_4:89776147-89776166 Msa1002960:CDS 50.0%
TGCCCATGTCACATGGTTCA+TGG - chr6_4:89776154-89776173 Msa1002960:CDS 50.0%
TATTGTGCAGGATCGCCTTC+TGG + chr6_4:89776188-89776207 None:intergenic 50.0%
! CAGGTTAGAATCGGTTCTGG+AGG + chr6_4:89776642-89776661 None:intergenic 50.0%
CTCTTGTAGAGGGATTGGAC+GGG + chr6_4:89777063-89777082 None:intergenic 50.0%
CTCTTCCCCCCAAGAATTAG+AGG - chr6_4:89777353-89777372 Msa1002960:CDS 50.0%
CAAGCCCTCTAATTCTTGGG+GGG + chr6_4:89777361-89777380 None:intergenic 50.0%
CCAAGCCCTCTAATTCTTGG+GGG + chr6_4:89777362-89777381 None:intergenic 50.0%
GCCAAGCCCTCTAATTCTTG+GGG + chr6_4:89777363-89777382 None:intergenic 50.0%
GGCCAAGCCCTCTAATTCTT+GGG + chr6_4:89777364-89777383 None:intergenic 50.0%
AGGCCAAGCCCTCTAATTCT+TGG + chr6_4:89777365-89777384 None:intergenic 50.0%
AGTTGTGGCTGACCATACAC+CGG - chr6_4:89777640-89777659 Msa1002960:five_prime_UTR 50.0%
! TGGTCGTTTCTTTGGAGGGA+AGG - chr6_4:89777976-89777995 Msa1002960:five_prime_UTR 50.0%
ACCGTCCCGTGTCCTTTGAT+AGG - chr6_4:89771340-89771359 Msa1002960:three_prime_UTR 55.0%
GGGGTGGTTATGGGGTTTGA+TGG - chr6_4:89771877-89771896 Msa1002960:intron 55.0%
GTTTCCACAGCAAGGACAGG+TGG - chr6_4:89772311-89772330 Msa1002960:intron 55.0%
CACCAGCAAACATGGCACTC+TGG + chr6_4:89772343-89772362 None:intergenic 55.0%
! GGAACCTGCTGCTTCGTTTG+AGG - chr6_4:89772370-89772389 Msa1002960:intron 55.0%
GTTCCCTCAAACGAAGCAGC+AGG + chr6_4:89772377-89772396 None:intergenic 55.0%
TTCAAAGGTCCAGAACCGCG+TGG + chr6_4:89772434-89772453 None:intergenic 55.0%
!! CGCGGTTCTGGACCTTTGAA+TGG - chr6_4:89772434-89772453 Msa1002960:intron 55.0%
GAGGCAAAGCCTCTCTCCAA+AGG + chr6_4:89772473-89772492 None:intergenic 55.0%
TTGGAGAGAGGCTTTGCCTC+AGG - chr6_4:89772473-89772492 Msa1002960:intron 55.0%
AGGCTTTGCCTCAGGTCCAT+TGG - chr6_4:89772481-89772500 Msa1002960:intron 55.0%
CATGTCTGGGCCGATAGAGA+AGG - chr6_4:89772520-89772539 Msa1002960:intron 55.0%
TGTCTGGGCCGATAGAGAAG+GGG - chr6_4:89772522-89772541 Msa1002960:intron 55.0%
! CGCAAGTGGTGCCGAAAAGT+TGG + chr6_4:89772582-89772601 None:intergenic 55.0%
AGCACTCCATGGGTGGAAGT+TGG - chr6_4:89772687-89772706 Msa1002960:intron 55.0%
GGCCATGCCAACTGAGTAAC+CGG + chr6_4:89772734-89772753 None:intergenic 55.0%
AGTGTAGGCCGGACATCTCT+AGG - chr6_4:89772768-89772787 Msa1002960:intron 55.0%
! CCGGACATCTCTAGGAACTG+TGG - chr6_4:89772776-89772795 Msa1002960:intron 55.0%
! GCATAATCTGCAGTGGGCTC+AGG - chr6_4:89772838-89772857 Msa1002960:intron 55.0%
AGGGAAAGGCCGGTGAAGAT+AGG - chr6_4:89772858-89772877 Msa1002960:intron 55.0%
GGGAAAGGCCGGTGAAGATA+GGG - chr6_4:89772859-89772878 Msa1002960:intron 55.0%
!! CCGACTGGATTCTGGAGCAA+CGG + chr6_4:89773083-89773102 None:intergenic 55.0%
CCGTTGCTCCAGAATCCAGT+CGG - chr6_4:89773080-89773099 Msa1002960:intron 55.0%
TGCTCCAGAATCCAGTCGGT+CGG - chr6_4:89773084-89773103 Msa1002960:intron 55.0%
GATGAAGGCCCGTCTACATC+AGG - chr6_4:89773463-89773482 Msa1002960:CDS 55.0%
TGAAGGCCCGTCTACATCAG+GGG - chr6_4:89773465-89773484 Msa1002960:CDS 55.0%
ACCAATACACAGGGAGGAGG+GGG + chr6_4:89774175-89774194 None:intergenic 55.0%
CACCAATACACAGGGAGGAG+GGG + chr6_4:89774176-89774195 None:intergenic 55.0%
! GTTACCAGAGCATTTGGCGC+TGG - chr6_4:89774911-89774930 Msa1002960:intron 55.0%
! TTGGCGCTGGGTTCTTGAAG+AGG - chr6_4:89774924-89774943 Msa1002960:intron 55.0%
! TGGCGCTGGGTTCTTGAAGA+GGG - chr6_4:89774925-89774944 Msa1002960:intron 55.0%
ACTGGTGTGTGCGTGCAATC+TGG - chr6_4:89776956-89776975 Msa1002960:CDS 55.0%
CCCCCAAGAATTAGAGGGCT+TGG - chr6_4:89777359-89777378 Msa1002960:CDS 55.0%
TCCACAGCAAGGACAGGTGG+CGG - chr6_4:89772314-89772333 Msa1002960:intron 60.0%
CCTTTGCAGCCAGTTCCACG+CGG - chr6_4:89772416-89772435 Msa1002960:intron 60.0%
GTCTGGGCCGATAGAGAAGG+GGG - chr6_4:89772523-89772542 Msa1002960:intron 60.0%
! TTTTCGGCACCACTTGCGCG+TGG - chr6_4:89772584-89772603 Msa1002960:intron 60.0%
! TCTGCAGTGGGCTCAGGGAA+AGG - chr6_4:89772844-89772863 Msa1002960:intron 60.0%
TCCCCCTCCTCCCTGTGTAT+TGG - chr6_4:89774171-89774190 Msa1002960:intron 60.0%
GAACCCAGCGCCAAATGCTC+TGG + chr6_4:89774918-89774937 None:intergenic 60.0%
GGCTGACCATACACCGGAGT+AGG - chr6_4:89777646-89777665 Msa1002960:five_prime_UTR 60.0%
ACCGCCACCTGTCCTTGCTG+TGG + chr6_4:89772318-89772337 None:intergenic 65.0%
CCGCGTGGAACTGGCTGCAA+AGG + chr6_4:89772419-89772438 None:intergenic 65.0%
CAGCCAGTTCCACGCGGTTC+TGG - chr6_4:89772422-89772441 Msa1002960:intron 65.0%
GGTCCAGAACCGCGTGGAAC+TGG + chr6_4:89772428-89772447 None:intergenic 65.0%
CACCACTTGCGCGTGGTCGT+AGG - chr6_4:89772591-89772610 Msa1002960:intron 65.0%
CTCCTACGACCACGCGCAAG+TGG + chr6_4:89772596-89772615 None:intergenic 65.0%
CACTTGCGCGTGGTCGTAGG+AGG - chr6_4:89772594-89772613 Msa1002960:intron 65.0%
! CAGTGGGCTCAGGGAAAGGC+CGG - chr6_4:89772848-89772867 Msa1002960:intron 65.0%
TGTGAGTATGCGCGCGCGTG+TGG + chr6_4:89776896-89776915 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 89771316 89778269 89771316 ID=Msa1002960;Name=Msa1002960
chr6_4 mRNA 89771316 89778269 89771316 ID=Msa1002960-mRNA-1;Parent=Msa1002960;Name=Msa1002960-mRNA-1;_AED=0.04;_eAED=0.04;_QI=665|1|1|1|1|1|4|250|892
chr6_4 exon 89771316 89771681 89771316 ID=Msa1002960-mRNA-1:exon:17456;Parent=Msa1002960-mRNA-1
chr6_4 exon 89773337 89773601 89773337 ID=Msa1002960-mRNA-1:exon:17455;Parent=Msa1002960-mRNA-1
chr6_4 exon 89774639 89774752 89774639 ID=Msa1002960-mRNA-1:exon:17454;Parent=Msa1002960-mRNA-1
chr6_4 exon 89775421 89778269 89775421 ID=Msa1002960-mRNA-1:exon:17453;Parent=Msa1002960-mRNA-1
chr6_4 five_prime_UTR 89777605 89778269 89777605 ID=Msa1002960-mRNA-1:five_prime_utr;Parent=Msa1002960-mRNA-1
chr6_4 CDS 89775421 89777604 89775421 ID=Msa1002960-mRNA-1:cds;Parent=Msa1002960-mRNA-1
chr6_4 CDS 89774639 89774752 89774639 ID=Msa1002960-mRNA-1:cds;Parent=Msa1002960-mRNA-1
chr6_4 CDS 89773337 89773601 89773337 ID=Msa1002960-mRNA-1:cds;Parent=Msa1002960-mRNA-1
chr6_4 CDS 89771566 89771681 89771566 ID=Msa1002960-mRNA-1:cds;Parent=Msa1002960-mRNA-1
chr6_4 three_prime_UTR 89771316 89771565 89771316 ID=Msa1002960-mRNA-1:three_prime_utr;Parent=Msa1002960-mRNA-1
Gene Sequence

>Msa1002960

ATGGGTAACGGCACTTCTCGTGTTGTTGGTTGTTTAGTGCCATTCAATGGTAAAAATGGTGTTGATTTGGAGTTTTTAGAGCCATTAGATGAAGGTTTAGGACATTCTTTTTGTTATGTGAGACCAACTATGTTTGAATCTCCTGCTATTAGTCCATCGAATTCTGAGAGGTTTACCGTTGATTCAAGCACTCTTGATTCTGAAACCTTGAGTGGTTCGTTTAGGCATGATAGTATGGAGCATTCTAATTCTTCTGGTTTACACAAGCAGGGTAAGAATTTCCCTGAAACTACGTTTAAGACGATTTCAGGGGCTTCTGTTAGTGCCAATGTTTCCACAGCAAGGACAGGTGGCGGTAACCAGAGTGCCATGTTTGCTGGTGATTTCTTGGAACCTGCTGCTTCGTTTGAGGGAACTGCTTCGTTTGCTGCAATTCCTTTGCAGCCAGTTCCACGCGGTTCTGGACCTTTGAATGGTTTTATGTCTGGTCCTTTGGAGAGAGGCTTTGCCTCAGGTCCATTGGATAGAAGTGGTGGTTTCATGTCTGGGCCGATAGAGAAGGGGGTTATGTCAGGTCCTCTTGATGACACTGATAAATCCAACTTTTCGGCACCACTTGCGCGTGGTCGTAGGAGGCCGCGTCTACAACATCTCATGAGAAGTGTTAGTGGACCGGTGAAGAACACGTTTTCTCGAACATTCTCTAAGCACTCCATGGGTGGAAGTTGGATGCAAAGGTTGTTCTTTCAACCGGTTACTCAGTTGGCATGGCCTTCCAGAGATACTAAGTGTAGGCCGGACATCTCTAGGAACTGTGGTATTGATGTTGTACCGTATGAAGCTGAGTATAAACACACGCATAATCTGCAGTGGGCTCAGGGAAAGGCCGGTGAAGATAGGGTTCATGTAGTTCTTTCTGAAGAACAAGGGTGGTTGTTTATTGGGATATATGACGGTTTTAGTGGACCAGATGCACCTGATTTTTTGATGAGCCATCTTTATAGATTTCTAGACAAAGAATTGGAAGGTTTACTTTGGGATTATGAAGATAATCCTGTAGATTCCCTTAAACCCGAAGTCCCTGAAACTTTAAAAGCTACCGTTGCTCCAGAATCCAGTCGGTCGGAAATGTCTGATACTCATACTAATTCTAATCAAGAATGTTTTGAAGCTTGTTCTGGTCCTGAATTAATCAAGGATCAATCATTTAACAATGAGATAGTTGAGGAAAAGGCTGAAGTTAATGTAAATGTTGAACACCAGTTATCTAATTGTGGAAGTAGCTTGTCTACTGTTTCTAATTCTGTTCAACATGAAAAGTTGACTGGAAAAGGTAAAAGAAGTTTAAGGCTTTATGAGCTACTTCAAATGGAATCTTGGGATGATCAATGTAATGATTCCTCAGTTCCGATGGAGTCAATACTAGATGAGCATACAAGACCTTGCTCGTCTACTGTAAGAGAAGATGGCTCTAAACATCAGGATGAAGGCCCGTCTACATCAGGGGAAAATGGAAGCACTGGGTTTGGTTCAACCAACAAGGAGCACGAAGCTGTTTTTCCTGCTTCTGTATCAAGGCAGAATTCAAAAAAGTCATTTATCGGTGCAAAAATTAAAAAAATGTACAGGAAGCCAAAGTCCTTGTGTAAGAAACTCTTTCCTTGGAGTTATGATTGGCATAGGGAAGAAAGTAGTGTTGATGAGAAAATATTAGAAGCCTCTGGACCTATTAGAAAATGCAGGTCTGGAGTAGATCATAACGCAGTTTTAACAGCAATGGCTCGAGCTCTTGAAAGAACAGAAGAGGCATACATGGAAACGGCGGAGAATAATCTGGACAAAAATCCAGAACTTGCTATAATGGGGTCATGTGTTCTAGTGATGTTGATGAAGGATCAAGATGTTTATGTCATGAATCTGGGAGATAGTCGTGTGATTTTGGCTCAAGAAAGATCAAACGATCGCCATCCTAATTCAAGCTCTGTCAAGGATGACATGAGGCATAGAAATAGATCTAGAGAGTCATTAGTACGCATGGAGCTCGATAGGATTTCAGAGGAGTCTCCAATTCACAACCATAACAATCATGTTATCAAGATGAATAAAAACCGCGAGATATCATTTTGCAAATTAAAAATGAGGGCTCTGCAGCTTTCTACAGACCACAGCACCAGTATTGAAGAGGAAGTTTCAAGAATAAGAGCAGAACACCCTGATGATAGTCAGGCCATATTGAATGATCGAGTGAAAGGAAATTTAAAAGTTACCAGAGCATTTGGCGCTGGGTTCTTGAAGAGGCCGTCTTTTAACGAAGCTCTACTCGAGGTGTTTCAAGTTAAATATATCGGCTCTGCTCCTTACCTAAGTTGCACTCCTTCTGTACTTCACCATCGACTTTCTTCAAGTGACCGATTCTTGGTACTCTCCTCTGATGGGCTTTACCAATATTTCAGCAATGAAGAAGTGGTTGCCCATGTCACATGGTTCATGGAAAATGTTCCAGAAGGCGATCCTGCACAATACCTTATTGCAGAGCTTCTCTTCTGCGCTGCTAAAAAGAATGGAATGGATTTTCATGAACTGCTTGATATTCCTCATGGAGATCGGCGTAAATATCACGATGATGTATCTGTCATGGTCGTTTCTTTGGAGGGAAGGATTTGGAGATCATCGGGATAA
Protein sequence

>Msa1002960

MGNGTSRVVGCLVPFNGKNGVDLEFLEPLDEGLGHSFCYVRPTMFESPAISPSNSERFTVDSSTLDSETLSGSFRHDSMEHSNSSGLHKQGKNFPETTFKTISGASVSANVSTARTGGGNQSAMFAGDFLEPAASFEGTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRSGGFMSGPIEKGVMSGPLDDTDKSNFSAPLARGRRRPRLQHLMRSVSGPVKNTFSRTFSKHSMGGSWMQRLFFQPVTQLAWPSRDTKCRPDISRNCGIDVVPYEAEYKHTHNLQWAQGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRFLDKELEGLLWDYEDNPVDSLKPEVPETLKATVAPESSRSEMSDTHTNSNQECFEACSGPELIKDQSFNNEIVEEKAEVNVNVEHQLSNCGSSLSTVSNSVQHEKLTGKGKRSLRLYELLQMESWDDQCNDSSVPMESILDEHTRPCSSTVREDGSKHQDEGPSTSGENGSTGFGSTNKEHEAVFPASVSRQNSKKSFIGAKIKKMYRKPKSLCKKLFPWSYDWHREESSVDEKILEASGPIRKCRSGVDHNAVLTAMARALERTEEAYMETAENNLDKNPELAIMGSCVLVMLMKDQDVYVMNLGDSRVILAQERSNDRHPNSSSVKDDMRHRNRSRESLVRMELDRISEESPIHNHNNHVIKMNKNREISFCKLKMRALQLSTDHSTSIEEEVSRIRAEHPDDSQAILNDRVKGNLKVTRAFGAGFLKRPSFNEALLEVFQVKYIGSAPYLSCTPSVLHHRLSSSDRFLVLSSDGLYQYFSNEEVVAHVTWFMENVPEGDPAQYLIAELLFCAAKKNGMDFHELLDIPHGDRRKYHDDVSVMVVSLEGRIWRSSG*