Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996820 | XP_003620143.1 | 99.312 | 727 | 5 | 0 | 1 | 727 | 1 | 727 | 0.0 | 1484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996820 | sp|Q9FX21|STT3B_ARATH | 87.308 | 717 | 88 | 1 | 13 | 726 | 18 | 734 | 0.0 | 1273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996820 | G7KKA7 | 99.312 | 727 | 5 | 0 | 1 | 727 | 1 | 727 | 0.0 | 1484 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0754710 | Msa0996820 | 0.807250 | 5.539213e-50 | -8.615850e-47 |
| Msa0756610 | Msa0996820 | 0.839733 | 1.328306e-57 | -8.615850e-47 |
| Msa0810930 | Msa0996820 | 0.830881 | 2.287082e-55 | -8.615850e-47 |
| Msa0835930 | Msa0996820 | 0.822159 | 2.750244e-53 | -8.615850e-47 |
| Msa0430230 | Msa0996820 | 0.814610 | 1.411038e-51 | -8.615850e-47 |
| Msa0435370 | Msa0996820 | 0.820739 | 5.849865e-53 | -8.615850e-47 |
| Msa0435420 | Msa0996820 | 0.817087 | 3.956065e-52 | -8.615850e-47 |
| Msa0435570 | Msa0996820 | 0.842970 | 1.867922e-58 | -8.615850e-47 |
| Msa0996820 | Msa1165090 | 0.804063 | 2.586244e-49 | -8.615850e-47 |
| Msa0996820 | Msa1373170 | 0.827022 | 1.967416e-54 | -8.615850e-47 |
| Msa0996820 | Msa1414390 | 0.827298 | 1.690264e-54 | -8.615850e-47 |
| Msa0508180 | Msa0996820 | 0.809759 | 1.614334e-50 | -8.615850e-47 |
| Msa0851160 | Msa0996820 | 0.823027 | 1.727213e-53 | -8.615850e-47 |
| Msa0896710 | Msa0996820 | 0.900605 | 6.198146e-78 | -8.615850e-47 |
| Msa0902360 | Msa0996820 | 0.825366 | 4.874514e-54 | -8.615850e-47 |
| Msa0962200 | Msa0996820 | 0.835011 | 2.150480e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996820 | MtrunA17_Chr6g0481721 | 99.312 | 727 | 5 | 0 | 1 | 727 | 1 | 727 | 0.0 | 1484 |
| Msa0996820 | MtrunA17_Chr1g0211841 | 52.374 | 737 | 289 | 9 | 38 | 726 | 23 | 745 | 0.0 | 747 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996820 | AT1G34130.1 | 87.308 | 717 | 88 | 1 | 13 | 726 | 18 | 734 | 0.0 | 1273 |
| Msa0996820 | AT5G19690.1 | 51.279 | 743 | 302 | 8 | 32 | 726 | 22 | 752 | 0.0 | 717 |
| Msa0996820 | AT5G19690.2 | 51.247 | 722 | 292 | 8 | 53 | 726 | 2 | 711 | 0.0 | 700 |
Find 193 sgRNAs with CRISPR-Local
Find 449 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTGGTGTTGTTGGTTAC+TGG | 0.231153 | 6_4:-75507765 | Msa0996820:CDS |
| TAATCTGGTTCCTTTATTAC+AGG | 0.239527 | 6_4:+75503974 | None:intergenic |
| AGCTGTCTTATTATCGGTTT+GGG | 0.248895 | 6_4:-75503477 | Msa0996820:CDS |
| ATTTGGTGAATTTAGGGTTT+TGG | 0.249770 | 6_4:+75508509 | None:intergenic |
| TGTGATGATTTGGTGAATTT+AGG | 0.250695 | 6_4:+75508502 | None:intergenic |
| TGGTGAACATATGGCTTCTA+TGG | 0.253337 | 6_4:-75507640 | Msa0996820:CDS |
| ATAAGACAGTTCAACATCTT+TGG | 0.258164 | 6_4:+75503911 | None:intergenic |
| ACATCATAGCACCGTTCTTT+TGG | 0.260731 | 6_4:+75505232 | None:intergenic |
| GTCGTGTTTGGTGGTGTTAC+TGG | 0.264869 | 6_4:-75504850 | Msa0996820:CDS |
| GTTATGTCATGGTGGGATTA+TGG | 0.273069 | 6_4:-75505024 | Msa0996820:CDS |
| GAACTGCAAATCTGAGAAAA+TGG | 0.274412 | 6_4:+75508123 | None:intergenic |
| TGGGCGTTGGCGTCGGCTTT+TGG | 0.276203 | 6_4:-75507852 | Msa0996820:CDS |
| AACACGGTTTCTCCGAGTTT+TGG | 0.286522 | 6_4:-75508247 | Msa0996820:CDS |
| AGAATTTGACTCGGGTTGTT+AGG | 0.293673 | 6_4:-75505784 | Msa0996820:CDS |
| CTGCCATTGTTGTGATGATT+TGG | 0.303343 | 6_4:+75508492 | None:intergenic |
| GTGATGATTTGGTGAATTTA+GGG | 0.303484 | 6_4:+75508503 | None:intergenic |
| TAATTTCCCGCACACGAAAA+AGG | 0.305580 | 6_4:+75502666 | None:intergenic |
| AGGTGTTGAAATTGGAAATA+AGG | 0.316515 | 6_4:-75502830 | Msa0996820:CDS |
| GGAAAAGGAACAGCAATATA+TGG | 0.333152 | 6_4:+75505972 | None:intergenic |
| GGTACAAGCTGTCTTATTAT+CGG | 0.340894 | 6_4:-75503483 | Msa0996820:CDS |
| GGGGAGTTGACAACAGAATA+TGG | 0.344277 | 6_4:-75503457 | Msa0996820:CDS |
| GGTTTAATGCTTACTGCTGC+TGG | 0.345874 | 6_4:-75508161 | Msa0996820:CDS |
| TTATAATTGTATGTATGTTT+TGG | 0.345888 | 6_4:-75507715 | Msa0996820:CDS |
| CGGTAAAGAAATATGGGATT+CGG | 0.351802 | 6_4:-75508030 | Msa0996820:CDS |
| GAGGAGGAGTTCTTGTTGTT+TGG | 0.355288 | 6_4:+75508400 | None:intergenic |
| CTATGCAGATTAGGTTTGTT+GGG | 0.357039 | 6_4:-75507680 | Msa0996820:CDS |
| TGCTTCAAAAGGCTCTTCTA+AGG | 0.359146 | 6_4:-75505717 | Msa0996820:intron |
| CGTGCTAGAGGTGTTGAAAT+TGG | 0.359420 | 6_4:-75502838 | Msa0996820:CDS |
| AAGCTGTCTTATTATCGGTT+TGG | 0.359634 | 6_4:-75503478 | Msa0996820:CDS |
| TGAAATATGGATCGAATTCA+TGG | 0.363606 | 6_4:+75508297 | None:intergenic |
| TCAGAGACAGAAGCAATAAT+TGG | 0.363976 | 6_4:+75506034 | None:intergenic |
| TGCTATGTGTGTATTGTTCC+AGG | 0.366625 | 6_4:+75504951 | None:intergenic |
| TGTTGCTTGCTATGCAGATT+AGG | 0.370196 | 6_4:-75507689 | Msa0996820:CDS |
| TGCATTGATCGCGATTTGTC+CGG | 0.375691 | 6_4:-75507988 | Msa0996820:CDS |
| GACTATGTGTTAGTCGTGTT+TGG | 0.381068 | 6_4:-75504862 | Msa0996820:CDS |
| GCTATGCAGATTAGGTTTGT+TGG | 0.382135 | 6_4:-75507681 | Msa0996820:CDS |
| GGAGAATATCGTGTAGATAA+AGG | 0.383279 | 6_4:-75503941 | Msa0996820:CDS |
| TCTCCATTGACAAGGTAATC+TGG | 0.383736 | 6_4:+75503959 | None:intergenic |
| GTTCGTGAAAGCGGTGAATA+CGG | 0.384861 | 6_4:-75507886 | Msa0996820:CDS |
| CAAACCGTACAGAGTGGTTC+TGG | 0.388723 | 6_4:-75505752 | Msa0996820:CDS |
| TTCGTGAAAGCGGTGAATAC+GGG | 0.389496 | 6_4:-75507885 | Msa0996820:CDS |
| GGACATAAAGTTGGAGTACT+TGG | 0.397011 | 6_4:-75502809 | Msa0996820:CDS |
| GGTAAAGAAATATGGGATTC+GGG | 0.397341 | 6_4:-75508029 | Msa0996820:CDS |
| AGGCATTTACTACTCAGAAT+TGG | 0.402924 | 6_4:-75502783 | Msa0996820:CDS |
| TATTGGTGTTGTTGGTTACT+GGG | 0.405067 | 6_4:-75507764 | Msa0996820:CDS |
| ATTGGTTCGATTCCGATTCA+TGG | 0.405627 | 6_4:-75508223 | Msa0996820:CDS |
| GCTTTATGTATTGGTGTTGT+TGG | 0.405793 | 6_4:-75507772 | Msa0996820:CDS |
| AGTGTGTGTGAGTGTGGATC+TGG | 0.407455 | 6_4:+75508585 | None:intergenic |
| TGGAAATAAGGACATAAAGT+TGG | 0.417826 | 6_4:-75502818 | Msa0996820:CDS |
| GTGGTGCGATAGTTGAAATA+TGG | 0.418673 | 6_4:+75508284 | None:intergenic |
| TGTTCAATCTGGTGAACATA+TGG | 0.422142 | 6_4:-75507649 | Msa0996820:CDS |
| ATTATCGTGAGGCTTACTTT+TGG | 0.425418 | 6_4:-75505077 | Msa0996820:CDS |
| GAATTTGACTCGGGTTGTTA+GGG | 0.426599 | 6_4:-75505783 | Msa0996820:CDS |
| GATATGCTATTCACTGTACT+TGG | 0.426929 | 6_4:-75505179 | Msa0996820:CDS |
| GGTGTTGGTGCCGTTGCCTT+GGG | 0.430966 | 6_4:-75506142 | Msa0996820:CDS |
| CTCAATTGTCTTGGCTGCAA+GGG | 0.435929 | 6_4:-75505130 | Msa0996820:CDS |
| TGGTGTTGGTGCCGTTGCCT+TGG | 0.436713 | 6_4:-75506143 | Msa0996820:CDS |
| CAGAACCACTCTGTACGGTT+TGG | 0.441168 | 6_4:+75505753 | None:intergenic |
| AATAGAGGCCAGCAGGGAAA+AGG | 0.444820 | 6_4:+75505957 | None:intergenic |
| TTTCTATGGATGGTGAGAAT+TGG | 0.450016 | 6_4:-75504010 | Msa0996820:CDS |
| GGGGAGTTTGTCGTGGGCGT+TGG | 0.450782 | 6_4:-75507865 | Msa0996820:CDS |
| CCTCAATTGTCTTGGCTGCA+AGG | 0.452743 | 6_4:-75505131 | Msa0996820:CDS |
| TTATATGTAGAATTCAGTTA+AGG | 0.453350 | 6_4:-75502561 | Msa0996820:three_prime_UTR |
| CAAAGATGACCCTCTGGCCG+TGG | 0.453430 | 6_4:+75505103 | None:intergenic |
| TTTGGTGCCGCTTTATGTAT+TGG | 0.453549 | 6_4:-75507781 | Msa0996820:CDS |
| AGGAGATCTTGTGCCATTGA+TGG | 0.454967 | 6_4:+75508455 | None:intergenic |
| CATGACATAACCTTGGCATC+TGG | 0.455319 | 6_4:+75505036 | None:intergenic |
| CTCATCTCCCTCAATTGTCT+TGG | 0.455502 | 6_4:-75505139 | Msa0996820:CDS |
| GGGTTTCAACATGTTCAATC+TGG | 0.457870 | 6_4:-75507660 | Msa0996820:CDS |
| TTGGGAGTAGGCATGGCATC+TGG | 0.460733 | 6_4:-75506124 | Msa0996820:CDS |
| GAATAAAACCTTCCGGTCCA+TGG | 0.472101 | 6_4:+75506091 | None:intergenic |
| CAAGGGGTGCCCACGGCCAG+AGG | 0.473774 | 6_4:-75505113 | Msa0996820:CDS |
| CACAACCTCACCACCATCAA+TGG | 0.474161 | 6_4:-75508468 | Msa0996820:CDS |
| AACTCTCCACGCCACTTGCT+TGG | 0.476391 | 6_4:-75502446 | Msa0996820:three_prime_UTR |
| AAAGGAACTGGTGCTTCAAA+AGG | 0.479203 | 6_4:-75505728 | Msa0996820:CDS |
| TTTGTCGTGGGCGTTGGCGT+CGG | 0.489095 | 6_4:-75507859 | Msa0996820:CDS |
| ACAATCTTCATAGTTATGTA+TGG | 0.489530 | 6_4:-75505908 | Msa0996820:CDS |
| AGTGGTTCTGGTAAAGGAAC+TGG | 0.493016 | 6_4:-75505740 | Msa0996820:CDS |
| GAACCAGATTACCTTGTCAA+TGG | 0.500749 | 6_4:-75503962 | Msa0996820:CDS |
| TTAAACCTAGGGTTGTGATT+CGG | 0.503699 | 6_4:+75508378 | None:intergenic |
| TATATATCGAGATCTGTTGC+TGG | 0.504674 | 6_4:-75507963 | Msa0996820:CDS |
| GAGTGAAGGGAAGGTGAGAG+AGG | 0.507662 | 6_4:+75508612 | None:intergenic |
| TGGATCGAATTCATGGATCA+TGG | 0.511512 | 6_4:+75508304 | None:intergenic |
| GGTGCCGTTGCCTTGGGAGT+AGG | 0.512371 | 6_4:-75506136 | Msa0996820:CDS |
| GCATTGATCGCGATTTGTCC+GGG | 0.515574 | 6_4:-75507987 | Msa0996820:CDS |
| ACAGAATATGGCAAACCACC+TGG | 0.518951 | 6_4:-75503445 | Msa0996820:CDS |
| GGTGAACATATGGCTTCTAT+GGG | 0.519399 | 6_4:-75507639 | Msa0996820:CDS |
| TGGTTATCAAATCACTGCCA+TGG | 0.520717 | 6_4:-75505004 | Msa0996820:CDS |
| ATATGATCCTTAGCATATGT+TGG | 0.521428 | 6_4:+75506058 | None:intergenic |
| GTACAGAGTGGTTCTGGTAA+AGG | 0.521847 | 6_4:-75505746 | Msa0996820:CDS |
| CTTGCAGCCAAGACAATTGA+GGG | 0.524883 | 6_4:+75505132 | None:intergenic |
| CCACTCGGTCGAATCGTTGG+TGG | 0.526034 | 6_4:-75508197 | Msa0996820:CDS |
| ATTCAGTTAAGGTAATATTG+TGG | 0.526394 | 6_4:-75502550 | Msa0996820:three_prime_UTR |
| CGTTGCCTTGGGAGTAGGCA+TGG | 0.527437 | 6_4:-75506131 | Msa0996820:CDS |
| CCTTGCAGCCAAGACAATTG+AGG | 0.529935 | 6_4:+75505131 | None:intergenic |
| CTGAGCATCAGCCTACTGCT+TGG | 0.530035 | 6_4:-75506015 | Msa0996820:CDS |
| TATCCACTCGGTCGAATCGT+TGG | 0.531263 | 6_4:-75508200 | Msa0996820:CDS |
| TTTGTCTAGATTTCTATGGA+TGG | 0.533187 | 6_4:-75504020 | Msa0996820:intron |
| CTACTGTGAAGAATTTGACT+CGG | 0.534921 | 6_4:-75505793 | Msa0996820:CDS |
| GTGGATCTGGTTGTGAGTGA+AGG | 0.535012 | 6_4:+75508598 | None:intergenic |
| AATGTGAGTGTGTGTGAGTG+TGG | 0.538256 | 6_4:+75508579 | None:intergenic |
| GGCACCAACACCAACTGCAC+TGG | 0.538667 | 6_4:+75506153 | None:intergenic |
| GCTTGATCCAACATATGCTA+AGG | 0.540492 | 6_4:-75506065 | Msa0996820:CDS |
| GATTGGGTAAAGCATTTACT+CGG | 0.544089 | 6_4:-75506217 | Msa0996820:CDS |
| TGAATACGGGGAGTTTGTCG+TGG | 0.544204 | 6_4:-75507872 | Msa0996820:CDS |
| TTGGCTGCAAGGGGTGCCCA+CGG | 0.546061 | 6_4:-75505120 | Msa0996820:CDS |
| TTTACCAGAACCACTCTGTA+CGG | 0.546353 | 6_4:+75505748 | None:intergenic |
| GCGTGCAATGTCATCTTATG+AGG | 0.548763 | 6_4:-75504920 | Msa0996820:CDS |
| CGAGGATGTAGATTAAACCT+AGG | 0.554154 | 6_4:+75508366 | None:intergenic |
| GACATAACCTTGGCATCTGG+TGG | 0.555183 | 6_4:+75505039 | None:intergenic |
| ACCGAGTGGATACCATGAAT+CGG | 0.557843 | 6_4:+75508211 | None:intergenic |
| AATACACACATAGCAACTGT+TGG | 0.557921 | 6_4:-75504943 | Msa0996820:CDS |
| GCACTAATGAGGCATACAGC+AGG | 0.559391 | 6_4:+75505830 | None:intergenic |
| CTATGGATGGTGAGAATTGG+CGG | 0.561137 | 6_4:-75504007 | Msa0996820:CDS |
| AAGCAAAGAATAAAACCTTC+CGG | 0.561162 | 6_4:+75506084 | None:intergenic |
| GGTTATCAAATCACTGCCAT+GGG | 0.562186 | 6_4:-75505003 | Msa0996820:CDS |
| TCAATTGTCTTGGCTGCAAG+GGG | 0.563819 | 6_4:-75505129 | Msa0996820:CDS |
| AATCGTCAAAGATGACCCTC+TGG | 0.564738 | 6_4:+75505097 | None:intergenic |
| CATGCCTACTCCCAAGGCAA+CGG | 0.564768 | 6_4:+75506132 | None:intergenic |
| AACAACACCAATACATAAAG+CGG | 0.565056 | 6_4:+75507774 | None:intergenic |
| CACTAATGAGGCATACAGCA+GGG | 0.568869 | 6_4:+75505831 | None:intergenic |
| TGGATCTGGTTGTGAGTGAA+GGG | 0.572815 | 6_4:+75508599 | None:intergenic |
| AATGTCATCTTATGAGGATG+AGG | 0.572863 | 6_4:-75504914 | Msa0996820:CDS |
| ATACACACATAGCAACTGTT+GGG | 0.577937 | 6_4:-75504942 | Msa0996820:CDS |
| CTAGGGTTGTGATTCGGAGG+AGG | 0.579023 | 6_4:+75508384 | None:intergenic |
| TATATGGAAATCAAACATGA+AGG | 0.579181 | 6_4:+75505988 | None:intergenic |
| CTCCTCCGAATCACAACCCT+AGG | 0.582391 | 6_4:-75508383 | Msa0996820:CDS |
| ATCACTGTAACCAGTGCAGT+TGG | 0.585794 | 6_4:-75506163 | Msa0996820:CDS |
| GTAACCAGTGCAGTTGGTGT+TGG | 0.586031 | 6_4:-75506157 | Msa0996820:CDS |
| TATGTTCTGCACTAACGCAT+CGG | 0.587241 | 6_4:-75502484 | Msa0996820:three_prime_UTR |
| CATAATTCATGCCAAGCAAG+TGG | 0.587837 | 6_4:+75502435 | None:intergenic |
| TATATGGTTTCGGCGTGGGG+TGG | 0.590584 | 6_4:-75507822 | Msa0996820:CDS |
| TCGTGAAAGCGGTGAATACG+GGG | 0.591245 | 6_4:-75507884 | Msa0996820:CDS |
| ATCCCACCATGACATAACCT+TGG | 0.591445 | 6_4:+75505029 | None:intergenic |
| TGAACATATGGCTTCTATGG+GGG | 0.594551 | 6_4:-75507637 | Msa0996820:CDS |
| TATGTGTTAGTCGTGTTTGG+TGG | 0.595667 | 6_4:-75504859 | Msa0996820:CDS |
| TACTGTGAAGAATTTGACTC+GGG | 0.596916 | 6_4:-75505792 | Msa0996820:CDS |
| GAATACGGGGAGTTTGTCGT+GGG | 0.597780 | 6_4:-75507871 | Msa0996820:CDS |
| CATAAAGTTGGAGTACTTGG+AGG | 0.598687 | 6_4:-75502806 | Msa0996820:CDS |
| AAAGTTGGAGTACTTGGAGG+AGG | 0.598910 | 6_4:-75502803 | Msa0996820:CDS |
| CATCTTTGACGATTATCGTG+AGG | 0.598920 | 6_4:-75505088 | Msa0996820:CDS |
| ACTCTTTACCTCACAGAACA+CGG | 0.599049 | 6_4:-75508263 | Msa0996820:CDS |
| TTACTTATTAATATCATCAG+AGG | 0.599134 | 6_4:+75504822 | None:intergenic |
| TGCCAAGGTTATGTCATGGT+GGG | 0.600958 | 6_4:-75505031 | Msa0996820:CDS |
| TTGTGCCATTGATGGTGGTG+AGG | 0.602267 | 6_4:+75508463 | None:intergenic |
| AACCTAGGGTTGTGATTCGG+AGG | 0.602304 | 6_4:+75508381 | None:intergenic |
| ATCGAACCAATTCCAAAACT+CGG | 0.603155 | 6_4:+75508235 | None:intergenic |
| CACGATATTCTCCATTGACA+AGG | 0.603724 | 6_4:+75503951 | None:intergenic |
| AATAACTGTTCTGTTTCCCA+TGG | 0.605412 | 6_4:+75504987 | None:intergenic |
| ATACCGCAATAGCACTAATG+AGG | 0.605771 | 6_4:+75505819 | None:intergenic |
| ATATGCTATTCACTGTACTT+GGG | 0.608269 | 6_4:-75505178 | Msa0996820:CDS |
| AAAGATGACCCTCTGGCCGT+GGG | 0.608676 | 6_4:+75505104 | None:intergenic |
| AAGGGGTGCCCACGGCCAGA+GGG | 0.608944 | 6_4:-75505112 | Msa0996820:CDS |
| GAGGATGTAGATTAAACCTA+GGG | 0.612813 | 6_4:+75508367 | None:intergenic |
| TTACTGGGAGATATTCATTG+AGG | 0.613059 | 6_4:-75507749 | Msa0996820:CDS |
| TCCCAGCCTTTCCAAAAGAA+CGG | 0.613563 | 6_4:-75505243 | Msa0996820:CDS |
| GTTGGTGGTACACTCTACCC+TGG | 0.613667 | 6_4:-75508182 | Msa0996820:CDS |
| ACATATCACCATGGACCGGA+AGG | 0.613721 | 6_4:-75506099 | Msa0996820:CDS |
| ATACATAACTATGAAGATTG+TGG | 0.615117 | 6_4:+75505910 | None:intergenic |
| GAACACTCCACCAGATGCCA+AGG | 0.615549 | 6_4:-75505046 | Msa0996820:CDS |
| AGATGCCATGCCTACTCCCA+AGG | 0.616613 | 6_4:+75506126 | None:intergenic |
| GCAGCAGTAAGCATTAAACC+AGG | 0.618048 | 6_4:+75508164 | None:intergenic |
| CAGAATATGGCAAACCACCT+GGG | 0.619228 | 6_4:-75503444 | Msa0996820:intron |
| GACAGGTATGATCGTGCTAG+AGG | 0.620620 | 6_4:-75502850 | Msa0996820:intron |
| GTGAACATATGGCTTCTATG+GGG | 0.622949 | 6_4:-75507638 | Msa0996820:CDS |
| GCTGGATCTTATGATAATGA+AGG | 0.626564 | 6_4:-75507945 | Msa0996820:CDS |
| ATCTTATGATAATGAAGGCG+TGG | 0.626662 | 6_4:-75507940 | Msa0996820:CDS |
| ATGCCTCATTAGTGCTATTG+CGG | 0.629582 | 6_4:-75505822 | Msa0996820:CDS |
| TCTGGTTGTGAGTGAAGGGA+AGG | 0.638578 | 6_4:+75508603 | None:intergenic |
| TCACCAAATCATCACAACAA+TGG | 0.640635 | 6_4:-75508495 | Msa0996820:exon |
| GGTTACATATCACCATGGAC+CGG | 0.640641 | 6_4:-75506103 | Msa0996820:CDS |
| CAGATGCCAAGGTTATGTCA+TGG | 0.646526 | 6_4:-75505035 | Msa0996820:CDS |
| ATGAAGGACGACCAAGCAGT+AGG | 0.646628 | 6_4:+75506004 | None:intergenic |
| TTATTGTTGACAATAACACC+TGG | 0.647406 | 6_4:-75504969 | Msa0996820:CDS |
| GGATCATGGATTCATAGCGA+AGG | 0.652770 | 6_4:+75508318 | None:intergenic |
| ACAGATCTCGATATATAACC+CGG | 0.655718 | 6_4:+75507969 | None:intergenic |
| AGATCTTGTGCCATTGATGG+TGG | 0.657720 | 6_4:+75508458 | None:intergenic |
| GCTGTCTTATTATCGGTTTG+GGG | 0.658859 | 6_4:-75503476 | Msa0996820:CDS |
| ACTAATGAGGCATACAGCAG+GGG | 0.659990 | 6_4:+75505832 | None:intergenic |
| ATGCCAAGGTTATGTCATGG+TGG | 0.660270 | 6_4:-75505032 | Msa0996820:CDS |
| TCCGATTCATGGTATCCACT+CGG | 0.661729 | 6_4:-75508212 | Msa0996820:CDS |
| TTCATGCCAAGCAAGTGGCG+TGG | 0.670216 | 6_4:+75502440 | None:intergenic |
| CAGCAGTAAGCATTAAACCA+GGG | 0.670434 | 6_4:+75508165 | None:intergenic |
| GTAAAGAAATATGGGATTCG+GGG | 0.671143 | 6_4:-75508028 | Msa0996820:CDS |
| GGATAAGGAGCTTACCCAGG+TGG | 0.671749 | 6_4:+75503430 | None:intergenic |
| TAAAGAAATATGGGATTCGG+GGG | 0.676102 | 6_4:-75508027 | Msa0996820:CDS |
| CGGAGAAACCGTGTTCTGTG+AGG | 0.683422 | 6_4:+75508255 | None:intergenic |
| CCACCAACGATTCGACCGAG+TGG | 0.687706 | 6_4:+75508197 | None:intergenic |
| TGGATGGTGAGAATTGGCGG+TGG | 0.699685 | 6_4:-75504004 | Msa0996820:CDS |
| AAAGTCCAAACCGTACAGAG+TGG | 0.706447 | 6_4:-75505758 | Msa0996820:CDS |
| CATCTGGTTACATATCACCA+TGG | 0.708877 | 6_4:-75506108 | Msa0996820:CDS |
| AGAGACGCGTGATGAATGCG+AGG | 0.733905 | 6_4:+75508348 | None:intergenic |
| GTGTTCTGTGAGGTAAAGAG+TGG | 0.767112 | 6_4:+75508265 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTATTTGACTTTAA+GGG | - | chr6_4:75503575-75503594 | Msa0996820:intron | 10.0% |
| !!! | TAAAATGCAATTTTAAAAAT+GGG | + | chr6_4:75503661-75503680 | None:intergenic | 10.0% |
| !!! | TTAAAATGCAATTTTAAAAA+TGG | + | chr6_4:75503662-75503681 | None:intergenic | 10.0% |
| !!! | TTAAATTTATTTGAGTTTAA+TGG | - | chr6_4:75503897-75503916 | Msa0996820:intron | 10.0% |
| !!! | TTTAAAATGCAATTTTAAAA+CGG | + | chr6_4:75503663-75503682 | None:intergenic | 10.0% |
| !! | ATGAAATATACATTTATTAA+TGG | - | chr6_4:75506882-75506901 | Msa0996820:intron | 10.0% |
| !!! | TTTTTACTTTTTTTGTTTTT+CGG | + | chr6_4:75508361-75508380 | None:intergenic | 10.0% |
| !!! | TTATAATTGTATGTATGTTT+TGG | - | chr6_4:75503342-75503361 | Msa0996820:intron | 15.0% |
| !!! | TATAATTGTATGTATGTTTT+GGG | - | chr6_4:75503343-75503362 | Msa0996820:intron | 15.0% |
| !!! | CTTAAATTTATTTGACTTTA+AGG | - | chr6_4:75503574-75503593 | Msa0996820:intron | 15.0% |
| !!! | TTAAAATGCAATTTTAAAAC+GGG | + | chr6_4:75503979-75503998 | None:intergenic | 15.0% |
| !! | ATGAAAAATCAATCTTTAAA+GGG | + | chr6_4:75504368-75504387 | None:intergenic | 15.0% |
| !! | TATGAAAAATCAATCTTTAA+AGG | + | chr6_4:75504369-75504388 | None:intergenic | 15.0% |
| !!! | TTTTCATAATCTCAATTTTT+TGG | - | chr6_4:75504381-75504400 | Msa0996820:intron | 15.0% |
| !!! | TTGAACAAATATATTTTCTT+AGG | - | chr6_4:75504628-75504647 | Msa0996820:intron | 15.0% |
| !! | TATATTATTATTTACATGCA+GGG | - | chr6_4:75505778-75505797 | Msa0996820:CDS | 15.0% |
| !!! | TTTTACTTTTTTTGTTTTTC+GGG | + | chr6_4:75508360-75508379 | None:intergenic | 15.0% |
| !!! | ATTTTTTCGGTAAAGAAATA+TGG | - | chr6_4:75503020-75503039 | Msa0996820:intron | 20.0% |
| !!! | TTTTTTCGGTAAAGAAATAT+GGG | - | chr6_4:75503021-75503040 | Msa0996820:intron | 20.0% |
| !!! | TGGTTATTTTTATATGGTTT+CGG | - | chr6_4:75503225-75503244 | Msa0996820:intron | 20.0% |
| !!! | AAATCAACTAAAGTATTAGA+CGG | + | chr6_4:75503691-75503710 | None:intergenic | 20.0% |
| !!! | AATTTATTTGAGTTTAATGG+AGG | - | chr6_4:75503900-75503919 | Msa0996820:intron | 20.0% |
| !!! | AATTGCATTTTAAAGATAAC+CGG | - | chr6_4:75503669-75503688 | Msa0996820:intron | 20.0% |
| !! | TACAAATATGCTTTCATAAA+TGG | + | chr6_4:75504056-75504075 | None:intergenic | 20.0% |
| !!! | TTGCGGTTATTTTTATATTA+CGG | - | chr6_4:75504179-75504198 | Msa0996820:intron | 20.0% |
| !!! | GTATGTAGAATTATTTTACA+CGG | - | chr6_4:75504253-75504272 | Msa0996820:intron | 20.0% |
| !! | AATTTAAACTTGAACTTCAA+TGG | + | chr6_4:75504290-75504309 | None:intergenic | 20.0% |
| !!! | AACAAATATATTTTCTTAGG+TGG | - | chr6_4:75504631-75504650 | Msa0996820:intron | 20.0% |
| !!! | ACAAATATATTTTCTTAGGT+GGG | - | chr6_4:75504632-75504651 | Msa0996820:intron | 20.0% |
| !! | TAGTAGCATATGAATAAAAA+TGG | + | chr6_4:75505451-75505470 | None:intergenic | 20.0% |
| !! | GTATATTATTATTTACATGC+AGG | - | chr6_4:75505777-75505796 | Msa0996820:CDS | 20.0% |
| !! | TTACTTATTAATATCATCAG+AGG | + | chr6_4:75506238-75506257 | None:intergenic | 20.0% |
| !! | GTGAAATATATAACTTAAGA+TGG | + | chr6_4:75506263-75506282 | None:intergenic | 20.0% |
| !!! | TTTCTAAAAAAAAGCATGAA+GGG | + | chr6_4:75506619-75506638 | None:intergenic | 20.0% |
| !!! | TTTTCTAAAAAAAAGCATGA+AGG | + | chr6_4:75506620-75506639 | None:intergenic | 20.0% |
| !!! | TAGGTTTCTAATTTTTTTAC+AGG | - | chr6_4:75506788-75506807 | Msa0996820:intron | 20.0% |
| !!! | TTTCTAATTTTTTTACAGGT+TGG | - | chr6_4:75506792-75506811 | Msa0996820:intron | 20.0% |
| !!! | AATTTTTGTCTAGATTTCTA+TGG | - | chr6_4:75507033-75507052 | Msa0996820:intron | 20.0% |
| !!! | TGTATGCATACAAATTTTTT+GGG | + | chr6_4:75507225-75507244 | None:intergenic | 20.0% |
| !! | CATAAATTTATCCATTTATC+TGG | + | chr6_4:75507297-75507316 | None:intergenic | 20.0% |
| !! | GAAATAACCATTTAAAAAGT+TGG | - | chr6_4:75507316-75507335 | Msa0996820:intron | 20.0% |
| !! | ATTACTAGTATCTGTTAATA+AGG | + | chr6_4:75507699-75507718 | None:intergenic | 20.0% |
| !! | TTTAAAAACTGGTAACATTT+GGG | + | chr6_4:75507899-75507918 | None:intergenic | 20.0% |
| !!! | TTTTAAAAACTGGTAACATT+TGG | + | chr6_4:75507900-75507919 | None:intergenic | 20.0% |
| !!! | TAGTACAATGTTTTAAAAAC+TGG | + | chr6_4:75507910-75507929 | None:intergenic | 20.0% |
| !!! | AGTTTTTAAAACATTGTACT+AGG | - | chr6_4:75507909-75507928 | Msa0996820:CDS | 20.0% |
| !!! | TTTACTTTTTTTGTTTTTCG+GGG | + | chr6_4:75508359-75508378 | None:intergenic | 20.0% |
| !! | TTATATGTAGAATTCAGTTA+AGG | - | chr6_4:75508496-75508515 | Msa0996820:exon | 20.0% |
| !! | TTGGAATTTTCATGGAAAAT+GGG | + | chr6_4:75502532-75502551 | None:intergenic | 25.0% |
| !!! | TTTGGAATTTTCATGGAAAA+TGG | + | chr6_4:75502533-75502552 | None:intergenic | 25.0% |
| !!! | TTGTTTGGTTTTGAGTTTTA+GGG | + | chr6_4:75502645-75502664 | None:intergenic | 25.0% |
| !!! | GGCTTTTGGTTATTTTTATA+TGG | - | chr6_4:75503219-75503238 | Msa0996820:intron | 25.0% |
| !! | TTGTTGTTAATGATGATGAA+AGG | - | chr6_4:75503526-75503545 | Msa0996820:intron | 25.0% |
| !! | AATTTATTTGACTTTAAGGG+AGG | - | chr6_4:75503578-75503597 | Msa0996820:intron | 25.0% |
| !!! | ATTTTAAAAATGGGCTTATG+TGG | + | chr6_4:75503652-75503671 | None:intergenic | 25.0% |
| ! | AAATATTACCGTAAAATTGC+TGG | - | chr6_4:75503712-75503731 | Msa0996820:intron | 25.0% |
| !!! | AATTACAAAGTTTGTTGTTG+TGG | - | chr6_4:75503873-75503892 | Msa0996820:intron | 25.0% |
| !! | TGTTTAAGTTAAGAAGCAAT+TGG | - | chr6_4:75504107-75504126 | Msa0996820:intron | 25.0% |
| !! | GTTTAAGTTAAGAAGCAATT+GGG | - | chr6_4:75504108-75504127 | Msa0996820:intron | 25.0% |
| !! | AATGAGAATCAAGTATTTTG+CGG | - | chr6_4:75504162-75504181 | Msa0996820:intron | 25.0% |
| ! | TTATATTACGGTTACAAAGT+TGG | - | chr6_4:75504191-75504210 | Msa0996820:intron | 25.0% |
| ! | ATAAAACTGTTTAGTTGATC+AGG | - | chr6_4:75504475-75504494 | Msa0996820:intron | 25.0% |
| !! | TTAAATTAGCATCTAGCTTA+CGG | + | chr6_4:75504503-75504522 | None:intergenic | 25.0% |
| ! | GCTAGATGCTAATTTAAATT+TGG | - | chr6_4:75504506-75504525 | Msa0996820:intron | 25.0% |
| !! | TTTCTTTAAGCTTGATGTTT+TGG | - | chr6_4:75504562-75504581 | Msa0996820:intron | 25.0% |
| !! | TTCTTTAAGCTTGATGTTTT+GGG | - | chr6_4:75504563-75504582 | Msa0996820:intron | 25.0% |
| !! | TTATCAGGTGTTTTTCTTTT+TGG | - | chr6_4:75504818-75504837 | Msa0996820:intron | 25.0% |
| ! | TATATGGAAATCAAACATGA+AGG | + | chr6_4:75505072-75505091 | None:intergenic | 25.0% |
| ! | ATACATAACTATGAAGATTG+TGG | + | chr6_4:75505150-75505169 | None:intergenic | 25.0% |
| ! | ACAATCTTCATAGTTATGTA+TGG | - | chr6_4:75505149-75505168 | Msa0996820:CDS | 25.0% |
| !! | TCCTTTTCAGTAATACTTAT+AGG | - | chr6_4:75505504-75505523 | Msa0996820:intron | 25.0% |
| ! | TCCTATAAGTATTACTGAAA+AGG | + | chr6_4:75505508-75505527 | None:intergenic | 25.0% |
| ! | AATGTTGTAATTACTCTCAT+CGG | - | chr6_4:75505557-75505576 | Msa0996820:intron | 25.0% |
| ! | AATAAACAAGTAAAAGCTCA+GGG | + | chr6_4:75506935-75506954 | None:intergenic | 25.0% |
| ! | TAATAAACAAGTAAAAGCTC+AGG | + | chr6_4:75506936-75506955 | None:intergenic | 25.0% |
| !!! | GTGTATGCATACAAATTTTT+TGG | + | chr6_4:75507226-75507245 | None:intergenic | 25.0% |
| !!! | TCTTTATCTTTTTCGTTGAT+AGG | - | chr6_4:75507553-75507572 | Msa0996820:intron | 25.0% |
| ! | TATAAGGATATAACAACGAA+TGG | + | chr6_4:75507751-75507770 | None:intergenic | 25.0% |
| ! | TAACGTTTGTGATTAACTTA+TGG | - | chr6_4:75507852-75507871 | Msa0996820:CDS | 25.0% |
| ! | AACGTTTGTGATTAACTTAT+GGG | - | chr6_4:75507853-75507872 | Msa0996820:CDS | 25.0% |
| !!! | TTTTAAAACATTGTACTAGG+CGG | - | chr6_4:75507912-75507931 | Msa0996820:CDS | 25.0% |
| ! | AAATTGAATTCCAAAGGTTT+GGG | + | chr6_4:75507963-75507982 | None:intergenic | 25.0% |
| ! | AAAATTGAATTCCAAAGGTT+TGG | + | chr6_4:75507964-75507983 | None:intergenic | 25.0% |
| !!! | ACCTTTGGAATTCAATTTTT+AGG | - | chr6_4:75507965-75507984 | Msa0996820:CDS | 25.0% |
| ! | GCATGTTAAAATTTCAATCT+TGG | - | chr6_4:75507998-75508017 | Msa0996820:CDS | 25.0% |
| !! | TTTTAGCAATGTTTAGATTG+TGG | - | chr6_4:75508455-75508474 | Msa0996820:CDS | 25.0% |
| ! | ATTCAGTTAAGGTAATATTG+TGG | - | chr6_4:75508507-75508526 | Msa0996820:five_prime_UTR | 25.0% |
| ! | GGAATTTTCTTGGGAAAATT+GGG | + | chr6_4:75502511-75502530 | None:intergenic | 30.0% |
| ! | TGGAAAATGGGAATTTTCTT+GGG | + | chr6_4:75502520-75502539 | None:intergenic | 30.0% |
| ! | ATGGAAAATGGGAATTTTCT+TGG | + | chr6_4:75502521-75502540 | None:intergenic | 30.0% |
| !!! | TTAGGGTTTTGGAATTTTCA+TGG | + | chr6_4:75502540-75502559 | None:intergenic | 30.0% |
| !! | ATTTGGTGAATTTAGGGTTT+TGG | + | chr6_4:75502551-75502570 | None:intergenic | 30.0% |
| !! | GTGATGATTTGGTGAATTTA+GGG | + | chr6_4:75502557-75502576 | None:intergenic | 30.0% |
| !! | TGTGATGATTTGGTGAATTT+AGG | + | chr6_4:75502558-75502577 | None:intergenic | 30.0% |
| !!! | GTTTTGAGTTTTAGGGTTTT+GGG | + | chr6_4:75502638-75502657 | None:intergenic | 30.0% |
| !!! | GTTGTTTGGTTTTGAGTTTT+AGG | + | chr6_4:75502646-75502665 | None:intergenic | 30.0% |
| TGAAATATGGATCGAATTCA+TGG | + | chr6_4:75502763-75502782 | None:intergenic | 30.0% | |
| !!! | ACGATTGTAGCGTATTTTTT+CGG | - | chr6_4:75503007-75503026 | Msa0996820:intron | 30.0% |
| !!! | GTTTTATTTGTTCGTGAAAG+CGG | - | chr6_4:75503162-75503181 | Msa0996820:intron | 30.0% |
| AACAACACCAATACATAAAG+CGG | + | chr6_4:75503286-75503305 | None:intergenic | 30.0% | |
| ! | ACAAAATGCCAGCAATTTTA+CGG | + | chr6_4:75503723-75503742 | None:intergenic | 30.0% |
| GCAATACGATGAATTATCAT+TGG | + | chr6_4:75503948-75503967 | None:intergenic | 30.0% | |
| AATACTTGATTCTCATTGGA+CGG | + | chr6_4:75504159-75504178 | None:intergenic | 30.0% | |
| GCAAAATACTTGATTCTCAT+TGG | + | chr6_4:75504163-75504182 | None:intergenic | 30.0% | |
| !!! | GTTTTATGAGCACTTTTTTG+TGG | - | chr6_4:75504442-75504461 | Msa0996820:intron | 30.0% |
| !!! | GATGTTTTGGGTTTTACATT+TGG | - | chr6_4:75504575-75504594 | Msa0996820:intron | 30.0% |
| ATACAGCAAAGCAAAAAACT+AGG | + | chr6_4:75504666-75504685 | None:intergenic | 30.0% | |
| !!! | AGTTTTTTGCTTTGCTGTAT+TGG | - | chr6_4:75504666-75504685 | Msa0996820:intron | 30.0% |
| ! | AGGTGTTTTTCTTTTTGGAT+TGG | - | chr6_4:75504823-75504842 | Msa0996820:intron | 30.0% |
| ! | GGTGTTTTTCTTTTTGGATT+GGG | - | chr6_4:75504824-75504843 | Msa0996820:intron | 30.0% |
| ! | AACTGTTTCAAGCATTTTTG+AGG | - | chr6_4:75504871-75504890 | Msa0996820:CDS | 30.0% |
| AAGCAAAGAATAAAACCTTC+CGG | + | chr6_4:75504976-75504995 | None:intergenic | 30.0% | |
| ATATGATCCTTAGCATATGT+TGG | + | chr6_4:75505002-75505021 | None:intergenic | 30.0% | |
| GATGAGAGTAATTACAACAT+TGG | + | chr6_4:75505558-75505577 | None:intergenic | 30.0% | |
| ATATTGCAAAGCAATTGTCA+TGG | + | chr6_4:75505627-75505646 | None:intergenic | 30.0% | |
| !!! | AGTGTTCATTTTGATTACAG+TGG | - | chr6_4:75505736-75505755 | Msa0996820:CDS | 30.0% |
| ATATGCTATTCACTGTACTT+GGG | - | chr6_4:75505879-75505898 | Msa0996820:CDS | 30.0% | |
| TTATTGTTGACAATAACACC+TGG | - | chr6_4:75506088-75506107 | Msa0996820:CDS | 30.0% | |
| TAGCATTTGTCATAGAGAAA+CGG | + | chr6_4:75506320-75506339 | None:intergenic | 30.0% | |
| !! | TTCAAGTGGGTTAAAAGTTT+GGG | + | chr6_4:75506445-75506464 | None:intergenic | 30.0% |
| !! | TTTCAAGTGGGTTAAAAGTT+TGG | + | chr6_4:75506446-75506465 | None:intergenic | 30.0% |
| ATCAAGTTTGTGCAAATTGA+TGG | - | chr6_4:75506664-75506683 | Msa0996820:intron | 30.0% | |
| TCAAGTTTGTGCAAATTGAT+GGG | - | chr6_4:75506665-75506684 | Msa0996820:intron | 30.0% | |
| ACAACAAACTATGAAACCAT+GGG | + | chr6_4:75506742-75506761 | None:intergenic | 30.0% | |
| !! | TTTTACAGGTTGGAATTAGT+CGG | - | chr6_4:75506802-75506821 | Msa0996820:intron | 30.0% |
| TACATTTATTAATGGTGTCC+TGG | - | chr6_4:75506890-75506909 | Msa0996820:intron | 30.0% | |
| TTTGTCTAGATTTCTATGGA+TGG | - | chr6_4:75507037-75507056 | Msa0996820:intron | 30.0% | |
| ! | TGGAGTTTTTCCTGTAATAA+AGG | - | chr6_4:75507073-75507092 | Msa0996820:intron | 30.0% |
| ! | TAATCTGGTTCCTTTATTAC+AGG | + | chr6_4:75507086-75507105 | None:intergenic | 30.0% |
| ATAAGACAGTTCAACATCTT+TGG | + | chr6_4:75507149-75507168 | None:intergenic | 30.0% | |
| ACTACATTTGACCAGATAAA+TGG | - | chr6_4:75507283-75507302 | Msa0996820:intron | 30.0% | |
| ! | GCATAGTCCAACTTTTTAAA+TGG | + | chr6_4:75507326-75507345 | None:intergenic | 30.0% |
| !!! | TTGTTTTTAAGCTCGGTAAA+AGG | - | chr6_4:75507432-75507451 | Msa0996820:intron | 30.0% |
| !! | TGTTTTTAAGCTCGGTAAAA+GGG | - | chr6_4:75507433-75507452 | Msa0996820:intron | 30.0% |
| CTTGACATTAGTTGCATATA+AGG | + | chr6_4:75507767-75507786 | None:intergenic | 30.0% | |
| AATTGAATTCCAAAGGTTTG+GGG | + | chr6_4:75507962-75507981 | None:intergenic | 30.0% | |
| GCCTAAAAATTGAATTCCAA+AGG | + | chr6_4:75507969-75507988 | None:intergenic | 30.0% | |
| !! | CATTTTGAAAACCTCATTCA+GGG | + | chr6_4:75508107-75508126 | None:intergenic | 30.0% |
| !! | TCATTTTGAAAACCTCATTC+AGG | + | chr6_4:75508108-75508127 | None:intergenic | 30.0% |
| ! | ATGAGGTTTTCAAAATGACA+AGG | - | chr6_4:75508110-75508129 | Msa0996820:CDS | 30.0% |
| !! | AGGTGTTGAAATTGGAAATA+AGG | - | chr6_4:75508227-75508246 | Msa0996820:CDS | 30.0% |
| TGGAAATAAGGACATAAAGT+TGG | - | chr6_4:75508239-75508258 | Msa0996820:CDS | 30.0% | |
| ! | GGGAATTTTCTTGGGAAAAT+TGG | + | chr6_4:75502512-75502531 | None:intergenic | 35.0% |
| TCACCAAATCATCACAACAA+TGG | - | chr6_4:75502562-75502581 | Msa0996820:three_prime_UTR | 35.0% | |
| !!! | GGTTTTGAGTTTTAGGGTTT+TGG | + | chr6_4:75502639-75502658 | None:intergenic | 35.0% |
| TTAAACCTAGGGTTGTGATT+CGG | + | chr6_4:75502682-75502701 | None:intergenic | 35.0% | |
| GAGGATGTAGATTAAACCTA+GGG | + | chr6_4:75502693-75502712 | None:intergenic | 35.0% | |
| ATCGAACCAATTCCAAAACT+CGG | + | chr6_4:75502825-75502844 | None:intergenic | 35.0% | |
| GAACTGCAAATCTGAGAAAA+TGG | + | chr6_4:75502937-75502956 | None:intergenic | 35.0% | |
| CGGTAAAGAAATATGGGATT+CGG | - | chr6_4:75503027-75503046 | Msa0996820:intron | 35.0% | |
| GGTAAAGAAATATGGGATTC+GGG | - | chr6_4:75503028-75503047 | Msa0996820:intron | 35.0% | |
| GTAAAGAAATATGGGATTCG+GGG | - | chr6_4:75503029-75503048 | Msa0996820:intron | 35.0% | |
| TAAAGAAATATGGGATTCGG+GGG | - | chr6_4:75503030-75503049 | Msa0996820:intron | 35.0% | |
| ACAGATCTCGATATATAACC+CGG | + | chr6_4:75503091-75503110 | None:intergenic | 35.0% | |
| TATATATCGAGATCTGTTGC+TGG | - | chr6_4:75503094-75503113 | Msa0996820:intron | 35.0% | |
| ! | GCTGGATCTTATGATAATGA+AGG | - | chr6_4:75503112-75503131 | Msa0996820:intron | 35.0% |
| ! | ATCTTATGATAATGAAGGCG+TGG | - | chr6_4:75503117-75503136 | Msa0996820:intron | 35.0% |
| ! | ATTTTTATATGGTTTCGGCG+TGG | - | chr6_4:75503230-75503249 | Msa0996820:intron | 35.0% |
| ! | TTTTTATATGGTTTCGGCGT+GGG | - | chr6_4:75503231-75503250 | Msa0996820:intron | 35.0% |
| !! | GCTTTATGTATTGGTGTTGT+TGG | - | chr6_4:75503285-75503304 | Msa0996820:intron | 35.0% |
| !! | TATTGGTGTTGTTGGTTACT+GGG | - | chr6_4:75503293-75503312 | Msa0996820:intron | 35.0% |
| TTACTGGGAGATATTCATTG+AGG | - | chr6_4:75503308-75503327 | Msa0996820:intron | 35.0% | |
| ! | CTATGCAGATTAGGTTTGTT+GGG | - | chr6_4:75503377-75503396 | Msa0996820:intron | 35.0% |
| TGTTCAATCTGGTGAACATA+TGG | - | chr6_4:75503408-75503427 | Msa0996820:intron | 35.0% | |
| TAATGCAATGCAATGCAATG+TGG | + | chr6_4:75503473-75503492 | None:intergenic | 35.0% | |
| TTGGATGTCGATGTGTATAA+CGG | + | chr6_4:75503611-75503630 | None:intergenic | 35.0% | |
| GCAATACGACAAGTTATCAT+TGG | + | chr6_4:75503630-75503649 | None:intergenic | 35.0% | |
| ! | GCTTGATTGTTGTTGATGAA+AGG | - | chr6_4:75503847-75503866 | Msa0996820:intron | 35.0% |
| !!! | AATTTTAAAACGGGCTTACG+TGG | + | chr6_4:75503970-75503989 | None:intergenic | 35.0% |
| AATGAGAATCAAGCATTTGC+CGG | + | chr6_4:75504008-75504027 | None:intergenic | 35.0% | |
| GCAATATCATGAGATCTCAT+TGG | - | chr6_4:75504222-75504241 | Msa0996820:intron | 35.0% | |
| TGGATAGTTTCAACATGTGT+TGG | - | chr6_4:75504526-75504545 | Msa0996820:intron | 35.0% | |
| ! | GGGTTTTACATTTGGATTCA+TGG | - | chr6_4:75504583-75504602 | Msa0996820:intron | 35.0% |
| ! | TTGCTTTGCTGTATTGGAAT+TGG | - | chr6_4:75504672-75504691 | Msa0996820:intron | 35.0% |
| ! | AGTTAGCATTTTGTCTCTTG+AGG | - | chr6_4:75504780-75504799 | Msa0996820:intron | 35.0% |
| !!! | CTGACTTGGATTGTTTTATC+AGG | - | chr6_4:75504803-75504822 | Msa0996820:intron | 35.0% |
| ! | GATTGGGTAAAGCATTTACT+CGG | - | chr6_4:75504840-75504859 | Msa0996820:CDS | 35.0% |
| TCAGAGACAGAAGCAATAAT+TGG | + | chr6_4:75505026-75505045 | None:intergenic | 35.0% | |
| GGAAAAGGAACAGCAATATA+TGG | + | chr6_4:75505088-75505107 | None:intergenic | 35.0% | |
| ! | CTTACAAGCATGTATTTTGC+TGG | - | chr6_4:75505173-75505192 | Msa0996820:CDS | 35.0% |
| !! | CATGTATTTTGCTGGTGTTA+TGG | - | chr6_4:75505181-75505200 | Msa0996820:CDS | 35.0% |
| CTACTGTGAAGAATTTGACT+CGG | - | chr6_4:75505264-75505283 | Msa0996820:intron | 35.0% | |
| TACTGTGAAGAATTTGACTC+GGG | - | chr6_4:75505265-75505284 | Msa0996820:intron | 35.0% | |
| GAAGTAACTAGTTGAGCAAA+AGG | - | chr6_4:75505373-75505392 | Msa0996820:intron | 35.0% | |
| GGTATGGTAATAGGATAAGT+AGG | - | chr6_4:75505592-75505611 | Msa0996820:intron | 35.0% | |
| !!! | GGTGCTATGATGTTACTTTT+CGG | - | chr6_4:75505835-75505854 | Msa0996820:CDS | 35.0% |
| GATATGCTATTCACTGTACT+TGG | - | chr6_4:75505878-75505897 | Msa0996820:CDS | 35.0% | |
| ! | ATTATCGTGAGGCTTACTTT+TGG | - | chr6_4:75505980-75505999 | Msa0996820:CDS | 35.0% |
| AATAACTGTTCTGTTTCCCA+TGG | + | chr6_4:75506073-75506092 | None:intergenic | 35.0% | |
| AATACACACATAGCAACTGT+TGG | - | chr6_4:75506114-75506133 | Msa0996820:CDS | 35.0% | |
| ATACACACATAGCAACTGTT+GGG | - | chr6_4:75506115-75506134 | Msa0996820:CDS | 35.0% | |
| AATGTCATCTTATGAGGATG+AGG | - | chr6_4:75506143-75506162 | Msa0996820:CDS | 35.0% | |
| ! | CCAATACAACTCTTTCAAGT+GGG | + | chr6_4:75506458-75506477 | None:intergenic | 35.0% |
| ACCAATACAACTCTTTCAAG+TGG | + | chr6_4:75506459-75506478 | None:intergenic | 35.0% | |
| AATGACCAATCACTAGTTGA+GGG | + | chr6_4:75506500-75506519 | None:intergenic | 35.0% | |
| AAATGACCAATCACTAGTTG+AGG | + | chr6_4:75506501-75506520 | None:intergenic | 35.0% | |
| ! | TTACACGGAAGGTATGATAT+GGG | + | chr6_4:75506596-75506615 | None:intergenic | 35.0% |
| ! | AAAAAGCATGAAGGGTTACA+CGG | + | chr6_4:75506611-75506630 | None:intergenic | 35.0% |
| TGGGATAATTCAATGTAAGC+AGG | - | chr6_4:75506684-75506703 | Msa0996820:intron | 35.0% | |
| GGGATAATTCAATGTAAGCA+GGG | - | chr6_4:75506685-75506704 | Msa0996820:intron | 35.0% | |
| CAACAAACTATGAAACCATG+GGG | + | chr6_4:75506741-75506760 | None:intergenic | 35.0% | |
| CACAACAAACTATGAAACCA+TGG | + | chr6_4:75506743-75506762 | None:intergenic | 35.0% | |
| !! | CATAGTTTGTTGTGTCAATC+TGG | - | chr6_4:75506749-75506768 | Msa0996820:intron | 35.0% |
| ATTAATGGTGTCCTGGATAT+TGG | - | chr6_4:75506897-75506916 | Msa0996820:intron | 35.0% | |
| AAAGAGAAATGCCAATATCC+AGG | + | chr6_4:75506911-75506930 | None:intergenic | 35.0% | |
| TTTCTATGGATGGTGAGAAT+TGG | - | chr6_4:75507047-75507066 | Msa0996820:intron | 35.0% | |
| GGAGAATATCGTGTAGATAA+AGG | - | chr6_4:75507116-75507135 | Msa0996820:intron | 35.0% | |
| TTAGCACCATTAGTTGATCT+TGG | - | chr6_4:75507178-75507197 | Msa0996820:intron | 35.0% | |
| CAAATGCCAAGATCAACTAA+TGG | + | chr6_4:75507187-75507206 | None:intergenic | 35.0% | |
| !!! | GGTGCTATTGTTTTTAAGCT+CGG | - | chr6_4:75507425-75507444 | Msa0996820:intron | 35.0% |
| TCGGTAAAAGGGAATAAAAG+TGG | - | chr6_4:75507444-75507463 | Msa0996820:intron | 35.0% | |
| !! | CTGTTAGCTGATTTTTGTAC+AGG | - | chr6_4:75507493-75507512 | Msa0996820:intron | 35.0% |
| ! | GGTACAAGCTGTCTTATTAT+CGG | - | chr6_4:75507574-75507593 | Msa0996820:intron | 35.0% |
| ! | AAGCTGTCTTATTATCGGTT+TGG | - | chr6_4:75507579-75507598 | Msa0996820:intron | 35.0% |
| !! | AGCTGTCTTATTATCGGTTT+GGG | - | chr6_4:75507580-75507599 | Msa0996820:intron | 35.0% |
| AAGTTACTAACAGTAAGGCA+GGG | + | chr6_4:75507651-75507670 | None:intergenic | 35.0% | |
| GTCACAAGTTACTAACAGTA+AGG | + | chr6_4:75507656-75507675 | None:intergenic | 35.0% | |
| ATCACTGCTATCTCAACAAA+GGG | - | chr6_4:75507814-75507833 | Msa0996820:CDS | 35.0% | |
| TTCAGGGTTATTGATGTCTT+TGG | + | chr6_4:75508091-75508110 | None:intergenic | 35.0% | |
| AAGAGACAGGTGATTACAAA+CGG | + | chr6_4:75508182-75508201 | None:intergenic | 35.0% | |
| AGGCATTTACTACTCAGAAT+TGG | - | chr6_4:75508274-75508293 | Msa0996820:CDS | 35.0% | |
| AAGTGAAACCACCTAAAAAC+AGG | - | chr6_4:75508313-75508332 | Msa0996820:CDS | 35.0% | |
| !! | TAGACTTACCACCTGTTTTT+AGG | + | chr6_4:75508327-75508346 | None:intergenic | 35.0% |
| !!! | ACTTTTTTTGTTTTTCGGGG+AGG | + | chr6_4:75508356-75508375 | None:intergenic | 35.0% |
| !! | AAAAGAACCTTTTTCGTGTG+CGG | - | chr6_4:75508384-75508403 | Msa0996820:CDS | 35.0% |
| CTGCCATTGTTGTGATGATT+TGG | + | chr6_4:75502568-75502587 | None:intergenic | 40.0% | |
| !!! | GAGTTTTAGGGTTTTGGGAA+GGG | + | chr6_4:75502633-75502652 | None:intergenic | 40.0% |
| !!! | TGAGTTTTAGGGTTTTGGGA+AGG | + | chr6_4:75502634-75502653 | None:intergenic | 40.0% |
| CGAGGATGTAGATTAAACCT+AGG | + | chr6_4:75502694-75502713 | None:intergenic | 40.0% | |
| TGGATCGAATTCATGGATCA+TGG | + | chr6_4:75502756-75502775 | None:intergenic | 40.0% | |
| GTGGTGCGATAGTTGAAATA+TGG | + | chr6_4:75502776-75502795 | None:intergenic | 40.0% | |
| ACTCTTTACCTCACAGAACA+CGG | - | chr6_4:75502794-75502813 | Msa0996820:CDS | 40.0% | |
| !!! | GTTTCTCCGAGTTTTGGAAT+TGG | - | chr6_4:75502816-75502835 | Msa0996820:CDS | 40.0% |
| !! | ATTGGTTCGATTCCGATTCA+TGG | - | chr6_4:75502834-75502853 | Msa0996820:CDS | 40.0% |
| CAGCAGTAAGCATTAAACCA+GGG | + | chr6_4:75502895-75502914 | None:intergenic | 40.0% | |
| GTAGTATTCGACGCGAAAAA+TGG | + | chr6_4:75502989-75503008 | None:intergenic | 40.0% | |
| ! | TTTTATATGGTTTCGGCGTG+GGG | - | chr6_4:75503232-75503251 | Msa0996820:intron | 40.0% |
| !! | TTTGGTGCCGCTTTATGTAT+TGG | - | chr6_4:75503276-75503295 | Msa0996820:intron | 40.0% |
| !! | GTATTGGTGTTGTTGGTTAC+TGG | - | chr6_4:75503292-75503311 | Msa0996820:intron | 40.0% |
| !! | TGTTGCTTGCTATGCAGATT+AGG | - | chr6_4:75503368-75503387 | Msa0996820:intron | 40.0% |
| GCTATGCAGATTAGGTTTGT+TGG | - | chr6_4:75503376-75503395 | Msa0996820:intron | 40.0% | |
| GGGTTTCAACATGTTCAATC+TGG | - | chr6_4:75503397-75503416 | Msa0996820:intron | 40.0% | |
| TGGTGAACATATGGCTTCTA+TGG | - | chr6_4:75503417-75503436 | Msa0996820:intron | 40.0% | |
| GGTGAACATATGGCTTCTAT+GGG | - | chr6_4:75503418-75503437 | Msa0996820:intron | 40.0% | |
| GTGAACATATGGCTTCTATG+GGG | - | chr6_4:75503419-75503438 | Msa0996820:intron | 40.0% | |
| TGAACATATGGCTTCTATGG+GGG | - | chr6_4:75503420-75503439 | Msa0996820:intron | 40.0% | |
| ACAATCAAGCATTAACCCAG+AGG | + | chr6_4:75503837-75503856 | None:intergenic | 40.0% | |
| ! | GTTTAATGGAGGTGCATTGT+CGG | - | chr6_4:75503911-75503930 | Msa0996820:CDS | 40.0% |
| GGCAAATGCTTGATTCTCAT+TGG | - | chr6_4:75504007-75504026 | Msa0996820:CDS | 40.0% | |
| ! | GCTTGATTCTCATTGGTTGT+CGG | - | chr6_4:75504014-75504033 | Msa0996820:CDS | 40.0% |
| CATGAGATCTCATTGGATGT+CGG | - | chr6_4:75504229-75504248 | Msa0996820:intron | 40.0% | |
| AATTAACCTATGTGCTTGCG+AGG | - | chr6_4:75504306-75504325 | Msa0996820:intron | 40.0% | |
| ATTAACCTATGTGCTTGCGA+GGG | - | chr6_4:75504307-75504326 | Msa0996820:intron | 40.0% | |
| ! | TTAAAGGGTGTAGTCTAACG+AGG | + | chr6_4:75504353-75504372 | None:intergenic | 40.0% |
| CAATGATACAGTAGCATCCA+CGG | + | chr6_4:75504736-75504755 | None:intergenic | 40.0% | |
| CATCTGGTTACATATCACCA+TGG | - | chr6_4:75504949-75504968 | Msa0996820:CDS | 40.0% | |
| GCTTGATCCAACATATGCTA+AGG | - | chr6_4:75504992-75505011 | Msa0996820:CDS | 40.0% | |
| AGCGCTTGAAGCAAAAATAG+AGG | + | chr6_4:75505118-75505137 | None:intergenic | 40.0% | |
| ! | ATGCCTCATTAGTGCTATTG+CGG | - | chr6_4:75505235-75505254 | Msa0996820:CDS | 40.0% |
| ATACCGCAATAGCACTAATG+AGG | + | chr6_4:75505241-75505260 | None:intergenic | 40.0% | |
| !! | AGAATTTGACTCGGGTTGTT+AGG | - | chr6_4:75505273-75505292 | Msa0996820:intron | 40.0% |
| !! | GAATTTGACTCGGGTTGTTA+GGG | - | chr6_4:75505274-75505293 | Msa0996820:intron | 40.0% |
| TTTACCAGAACCACTCTGTA+CGG | + | chr6_4:75505312-75505331 | None:intergenic | 40.0% | |
| AAAGGAACTGGTGCTTCAAA+AGG | - | chr6_4:75505329-75505348 | Msa0996820:intron | 40.0% | |
| TGCTTCAAAAGGCTCTTCTA+AGG | - | chr6_4:75505340-75505359 | Msa0996820:intron | 40.0% | |
| GATGCAGTAGGTATGGTAAT+AGG | - | chr6_4:75505583-75505602 | Msa0996820:intron | 40.0% | |
| !! | ATAGCACCGTTCTTTTGGAA+AGG | + | chr6_4:75505823-75505842 | None:intergenic | 40.0% |
| ! | ACATCATAGCACCGTTCTTT+TGG | + | chr6_4:75505828-75505847 | None:intergenic | 40.0% |
| CATCTTTGACGATTATCGTG+AGG | - | chr6_4:75505969-75505988 | Msa0996820:CDS | 40.0% | |
| ! | GTTATGTCATGGTGGGATTA+TGG | - | chr6_4:75506033-75506052 | Msa0996820:CDS | 40.0% |
| TGGTTATCAAATCACTGCCA+TGG | - | chr6_4:75506053-75506072 | Msa0996820:CDS | 40.0% | |
| GGTTATCAAATCACTGCCAT+GGG | - | chr6_4:75506054-75506073 | Msa0996820:CDS | 40.0% | |
| TGCTATGTGTGTATTGTTCC+AGG | + | chr6_4:75506109-75506128 | None:intergenic | 40.0% | |
| GACTATGTGTTAGTCGTGTT+TGG | - | chr6_4:75506195-75506214 | Msa0996820:CDS | 40.0% | |
| TATGTGTTAGTCGTGTTTGG+TGG | - | chr6_4:75506198-75506217 | Msa0996820:CDS | 40.0% | |
| TGTCGTGCTGTGAATATAGT+GGG | + | chr6_4:75506351-75506370 | None:intergenic | 40.0% | |
| !! | AAGTGGGTTAAAAGTTTGGG+TGG | + | chr6_4:75506442-75506461 | None:intergenic | 40.0% |
| CCCACTTGAAAGAGTTGTAT+TGG | - | chr6_4:75506455-75506474 | Msa0996820:intron | 40.0% | |
| ATGACCAATCACTAGTTGAG+GGG | + | chr6_4:75506499-75506518 | None:intergenic | 40.0% | |
| ! | AAGAAGCACAACAAACGATG+AGG | + | chr6_4:75506561-75506580 | None:intergenic | 40.0% |
| ! | GTTACACGGAAGGTATGATA+TGG | + | chr6_4:75506597-75506616 | None:intergenic | 40.0% |
| GCTAACATATTTATGCCCCA+TGG | - | chr6_4:75506723-75506742 | Msa0996820:intron | 40.0% | |
| !! | AATGCATGAAGCATTGTAGC+AGG | + | chr6_4:75506997-75507016 | None:intergenic | 40.0% |
| GAACCAGATTACCTTGTCAA+TGG | - | chr6_4:75507095-75507114 | Msa0996820:intron | 40.0% | |
| TCTCCATTGACAAGGTAATC+TGG | + | chr6_4:75507101-75507120 | None:intergenic | 40.0% | |
| CACGATATTCTCCATTGACA+AGG | + | chr6_4:75507109-75507128 | None:intergenic | 40.0% | |
| TATGCATACACGTCTGTCTA+TGG | - | chr6_4:75507235-75507254 | Msa0996820:intron | 40.0% | |
| ATGCATACACGTCTGTCTAT+GGG | - | chr6_4:75507236-75507255 | Msa0996820:intron | 40.0% | |
| CAATAGCACCTGATTCATAC+TGG | + | chr6_4:75507415-75507434 | None:intergenic | 40.0% | |
| !! | GCTGTCTTATTATCGGTTTG+GGG | - | chr6_4:75507581-75507600 | Msa0996820:intron | 40.0% |
| CAAGTTACTAACAGTAAGGC+AGG | + | chr6_4:75507652-75507671 | None:intergenic | 40.0% | |
| AATAAGGACACCTAGACTGT+AGG | + | chr6_4:75507683-75507702 | None:intergenic | 40.0% | |
| CATCACTGCTATCTCAACAA+AGG | - | chr6_4:75507813-75507832 | Msa0996820:CDS | 40.0% | |
| GACATCAATAACCCTGAATG+AGG | - | chr6_4:75508093-75508112 | Msa0996820:CDS | 40.0% | |
| ! | TACCTGTCATTTCAAGAGAC+AGG | + | chr6_4:75508195-75508214 | None:intergenic | 40.0% |
| ! | GGACATAAAGTTGGAGTACT+TGG | - | chr6_4:75508248-75508267 | Msa0996820:CDS | 40.0% |
| ! | CATAAAGTTGGAGTACTTGG+AGG | - | chr6_4:75508251-75508270 | Msa0996820:CDS | 40.0% |
| TGAAACCACCTAAAAACAGG+TGG | - | chr6_4:75508316-75508335 | Msa0996820:CDS | 40.0% | |
| !!! | ACTTACCACCTGTTTTTAGG+TGG | + | chr6_4:75508324-75508343 | None:intergenic | 40.0% |
| !!! | TTTTTGTTTTTCGGGGAGGT+GGG | + | chr6_4:75508352-75508371 | None:intergenic | 40.0% |
| !!! | TTTTTTGTTTTTCGGGGAGG+TGG | + | chr6_4:75508353-75508372 | None:intergenic | 40.0% |
| !! | AAAGAACCTTTTTCGTGTGC+GGG | - | chr6_4:75508385-75508404 | Msa0996820:CDS | 40.0% |
| TAATTTCCCGCACACGAAAA+AGG | + | chr6_4:75508394-75508413 | None:intergenic | 40.0% | |
| TATGTTCTGCACTAACGCAT+CGG | - | chr6_4:75508573-75508592 | Msa0996820:five_prime_UTR | 40.0% | |
| TGGATCTGGTTGTGAGTGAA+GGG | + | chr6_4:75502461-75502480 | None:intergenic | 45.0% | |
| AATGTGAGTGTGTGTGAGTG+TGG | + | chr6_4:75502481-75502500 | None:intergenic | 45.0% | |
| ! | AGATCTTGTGCCATTGATGG+TGG | + | chr6_4:75502602-75502621 | None:intergenic | 45.0% |
| ! | AGGAGATCTTGTGCCATTGA+TGG | + | chr6_4:75502605-75502624 | None:intergenic | 45.0% |
| !! | GAGGAGGAGTTCTTGTTGTT+TGG | + | chr6_4:75502660-75502679 | None:intergenic | 45.0% |
| GGATCATGGATTCATAGCGA+AGG | + | chr6_4:75502742-75502761 | None:intergenic | 45.0% | |
| GTGTTCTGTGAGGTAAAGAG+TGG | + | chr6_4:75502795-75502814 | None:intergenic | 45.0% | |
| ! | AACACGGTTTCTCCGAGTTT+TGG | - | chr6_4:75502810-75502829 | Msa0996820:CDS | 45.0% |
| TCCGATTCATGGTATCCACT+CGG | - | chr6_4:75502845-75502864 | Msa0996820:CDS | 45.0% | |
| ACCGAGTGGATACCATGAAT+CGG | + | chr6_4:75502849-75502868 | None:intergenic | 45.0% | |
| GCAGCAGTAAGCATTAAACC+AGG | + | chr6_4:75502896-75502915 | None:intergenic | 45.0% | |
| GGTTTAATGCTTACTGCTGC+TGG | - | chr6_4:75502896-75502915 | Msa0996820:intron | 45.0% | |
| ! | TGCATTGATCGCGATTTGTC+CGG | - | chr6_4:75503069-75503088 | Msa0996820:intron | 45.0% |
| GTTCGTGAAAGCGGTGAATA+CGG | - | chr6_4:75503171-75503190 | Msa0996820:intron | 45.0% | |
| TTCGTGAAAGCGGTGAATAC+GGG | - | chr6_4:75503172-75503191 | Msa0996820:intron | 45.0% | |
| TCAAGCATTAACCCAGAGGT+GGG | + | chr6_4:75503833-75503852 | None:intergenic | 45.0% | |
| ATCAAGCATTAACCCAGAGG+TGG | + | chr6_4:75503834-75503853 | None:intergenic | 45.0% | |
| TTTAACCCTCGCAAGCACAT+AGG | + | chr6_4:75504315-75504334 | None:intergenic | 45.0% | |
| ! | ACGATGCTGTTTGTTTACCG+TGG | - | chr6_4:75504716-75504735 | Msa0996820:intron | 45.0% |
| TTTGTCTCTTGAGGCTGACT+TGG | - | chr6_4:75504789-75504808 | Msa0996820:intron | 45.0% | |
| ATCACTGTAACCAGTGCAGT+TGG | - | chr6_4:75504894-75504913 | Msa0996820:CDS | 45.0% | |
| GGTTACATATCACCATGGAC+CGG | - | chr6_4:75504954-75504973 | Msa0996820:CDS | 45.0% | |
| GAATAAAACCTTCCGGTCCA+TGG | + | chr6_4:75504969-75504988 | None:intergenic | 45.0% | |
| AGCAAAAATAGAGGCCAGCA+GGG | + | chr6_4:75505109-75505128 | None:intergenic | 45.0% | |
| AAGCAAAAATAGAGGCCAGC+AGG | + | chr6_4:75505110-75505129 | None:intergenic | 45.0% | |
| ACTAATGAGGCATACAGCAG+GGG | + | chr6_4:75505228-75505247 | None:intergenic | 45.0% | |
| CACTAATGAGGCATACAGCA+GGG | + | chr6_4:75505229-75505248 | None:intergenic | 45.0% | |
| AAAGTCCAAACCGTACAGAG+TGG | - | chr6_4:75505299-75505318 | Msa0996820:intron | 45.0% | |
| !! | GTACAGAGTGGTTCTGGTAA+AGG | - | chr6_4:75505311-75505330 | Msa0996820:intron | 45.0% |
| !! | AGTGGTTCTGGTAAAGGAAC+TGG | - | chr6_4:75505317-75505336 | Msa0996820:intron | 45.0% |
| TCTCATCGGTATGATGCAGT+AGG | - | chr6_4:75505571-75505590 | Msa0996820:intron | 45.0% | |
| TCGGTATGATGCAGTAGGTA+TGG | - | chr6_4:75505576-75505595 | Msa0996820:intron | 45.0% | |
| TCCCAGCCTTTCCAAAAGAA+CGG | - | chr6_4:75505814-75505833 | Msa0996820:CDS | 45.0% | |
| !! | ACCGTTCTTTTGGAAAGGCT+GGG | + | chr6_4:75505818-75505837 | None:intergenic | 45.0% |
| CTCATCTCCCTCAATTGTCT+TGG | - | chr6_4:75505918-75505937 | Msa0996820:CDS | 45.0% | |
| CTTGCAGCCAAGACAATTGA+GGG | + | chr6_4:75505928-75505947 | None:intergenic | 45.0% | |
| CTCAATTGTCTTGGCTGCAA+GGG | - | chr6_4:75505927-75505946 | Msa0996820:CDS | 45.0% | |
| TCAATTGTCTTGGCTGCAAG+GGG | - | chr6_4:75505928-75505947 | Msa0996820:CDS | 45.0% | |
| AATCGTCAAAGATGACCCTC+TGG | + | chr6_4:75505963-75505982 | None:intergenic | 45.0% | |
| CATGACATAACCTTGGCATC+TGG | + | chr6_4:75506024-75506043 | None:intergenic | 45.0% | |
| CAGATGCCAAGGTTATGTCA+TGG | - | chr6_4:75506022-75506041 | Msa0996820:CDS | 45.0% | |
| ATGCCAAGGTTATGTCATGG+TGG | - | chr6_4:75506025-75506044 | Msa0996820:CDS | 45.0% | |
| TGCCAAGGTTATGTCATGGT+GGG | - | chr6_4:75506026-75506045 | Msa0996820:CDS | 45.0% | |
| ATCCCACCATGACATAACCT+TGG | + | chr6_4:75506031-75506050 | None:intergenic | 45.0% | |
| GCGTGCAATGTCATCTTATG+AGG | - | chr6_4:75506137-75506156 | Msa0996820:CDS | 45.0% | |
| GTGTCGTGCTGTGAATATAG+TGG | + | chr6_4:75506352-75506371 | None:intergenic | 45.0% | |
| TGTTCCCCTCAACTAGTGAT+TGG | - | chr6_4:75506492-75506511 | Msa0996820:intron | 45.0% | |
| AATTCAATGTAAGCAGGGCC+AGG | - | chr6_4:75506690-75506709 | Msa0996820:intron | 45.0% | |
| TGGCACGCAAATTATGTCGT+AGG | - | chr6_4:75506769-75506788 | Msa0996820:intron | 45.0% | |
| CTATGGATGGTGAGAATTGG+CGG | - | chr6_4:75507050-75507069 | Msa0996820:intron | 45.0% | |
| CACTGAAGCTTAACTAGGCT+GGG | - | chr6_4:75507362-75507381 | Msa0996820:intron | 45.0% | |
| AGCACCTGATTCATACTGGA+GGG | + | chr6_4:75507411-75507430 | None:intergenic | 45.0% | |
| TAGCACCTGATTCATACTGG+AGG | + | chr6_4:75507412-75507431 | None:intergenic | 45.0% | |
| GGGGAGTTGACAACAGAATA+TGG | - | chr6_4:75507600-75507619 | Msa0996820:intron | 45.0% | |
| ACAGAATATGGCAAACCACC+TGG | - | chr6_4:75507612-75507631 | Msa0996820:intron | 45.0% | |
| CAGAATATGGCAAACCACCT+GGG | - | chr6_4:75507613-75507632 | Msa0996820:intron | 45.0% | |
| CTAACAGTAAGGCAGGGATA+AGG | + | chr6_4:75507645-75507664 | None:intergenic | 45.0% | |
| TGTGACACAACCTACAGTCT+AGG | - | chr6_4:75507670-75507689 | Msa0996820:CDS | 45.0% | |
| CACCTGTCTCTTGAAATGAC+AGG | - | chr6_4:75508190-75508209 | Msa0996820:CDS | 45.0% | |
| !! | CGTGCTAGAGGTGTTGAAAT+TGG | - | chr6_4:75508219-75508238 | Msa0996820:CDS | 45.0% |
| ! | AAAGTTGGAGTACTTGGAGG+AGG | - | chr6_4:75508254-75508273 | Msa0996820:CDS | 45.0% |
| !!! | TTATGTTTTTATTATAAATT+TGG | - | chr6_4:75503258-75503277 | Msa0996820:intron | 5.0% |
| TCTGGTTGTGAGTGAAGGGA+AGG | + | chr6_4:75502457-75502476 | None:intergenic | 50.0% | |
| GTGGATCTGGTTGTGAGTGA+AGG | + | chr6_4:75502462-75502481 | None:intergenic | 50.0% | |
| AGTGTGTGTGAGTGTGGATC+TGG | + | chr6_4:75502475-75502494 | None:intergenic | 50.0% | |
| CACAACCTCACCACCATCAA+TGG | - | chr6_4:75502589-75502608 | Msa0996820:three_prime_UTR | 50.0% | |
| !! | TTGTGCCATTGATGGTGGTG+AGG | + | chr6_4:75502597-75502616 | None:intergenic | 50.0% |
| !!! | GGGTTTTGGGAAGGGAATTG+AGG | + | chr6_4:75502625-75502644 | None:intergenic | 50.0% |
| ! | AACCTAGGGTTGTGATTCGG+AGG | + | chr6_4:75502679-75502698 | None:intergenic | 50.0% |
| TATCCACTCGGTCGAATCGT+TGG | - | chr6_4:75502857-75502876 | Msa0996820:intron | 50.0% | |
| AAATATGGGATTCGGGGGCT+GGG | - | chr6_4:75503035-75503054 | Msa0996820:intron | 50.0% | |
| ! | GCATTGATCGCGATTTGTCC+GGG | - | chr6_4:75503070-75503089 | Msa0996820:intron | 50.0% |
| TCGTGAAAGCGGTGAATACG+GGG | - | chr6_4:75503173-75503192 | Msa0996820:intron | 50.0% | |
| TGAATACGGGGAGTTTGTCG+TGG | - | chr6_4:75503185-75503204 | Msa0996820:intron | 50.0% | |
| GAATACGGGGAGTTTGTCGT+GGG | - | chr6_4:75503186-75503205 | Msa0996820:intron | 50.0% | |
| ! | GGGGGTCTTTTTCTTGCTTC+AGG | - | chr6_4:75503438-75503457 | Msa0996820:intron | 50.0% |
| TATGTAACTGACCCCACCTC+TGG | - | chr6_4:75503818-75503837 | Msa0996820:intron | 50.0% | |
| ATGTAACTGACCCCACCTCT+GGG | - | chr6_4:75503819-75503838 | Msa0996820:intron | 50.0% | |
| CAAGCATTAACCCAGAGGTG+GGG | + | chr6_4:75503832-75503851 | None:intergenic | 50.0% | |
| GCTTGCGAGGGTTAAAACTG+AGG | - | chr6_4:75504319-75504338 | Msa0996820:intron | 50.0% | |
| ! | GTAACCAGTGCAGTTGGTGT+TGG | - | chr6_4:75504900-75504919 | Msa0996820:CDS | 50.0% |
| ACATATCACCATGGACCGGA+AGG | - | chr6_4:75504958-75504977 | Msa0996820:CDS | 50.0% | |
| ATGAAGGACGACCAAGCAGT+AGG | + | chr6_4:75505056-75505075 | None:intergenic | 50.0% | |
| !! | TTGCTGTTCCTTTTCCCTGC+TGG | - | chr6_4:75505092-75505111 | Msa0996820:CDS | 50.0% |
| AATAGAGGCCAGCAGGGAAA+AGG | + | chr6_4:75505103-75505122 | None:intergenic | 50.0% | |
| GCACTAATGAGGCATACAGC+AGG | + | chr6_4:75505230-75505249 | None:intergenic | 50.0% | |
| CAGAACCACTCTGTACGGTT+TGG | + | chr6_4:75505307-75505326 | None:intergenic | 50.0% | |
| CAAACCGTACAGAGTGGTTC+TGG | - | chr6_4:75505305-75505324 | Msa0996820:intron | 50.0% | |
| !! | CACCGTTCTTTTGGAAAGGC+TGG | + | chr6_4:75505819-75505838 | None:intergenic | 50.0% |
| CCTTGCAGCCAAGACAATTG+AGG | + | chr6_4:75505929-75505948 | None:intergenic | 50.0% | |
| CCTCAATTGTCTTGGCTGCA+AGG | - | chr6_4:75505926-75505945 | Msa0996820:CDS | 50.0% | |
| GACATAACCTTGGCATCTGG+TGG | + | chr6_4:75506021-75506040 | None:intergenic | 50.0% | |
| !! | GTCGTGTTTGGTGGTGTTAC+TGG | - | chr6_4:75506207-75506226 | Msa0996820:CDS | 50.0% |
| AGCATGAAGGGTTACACGGA+AGG | + | chr6_4:75506607-75506626 | None:intergenic | 50.0% | |
| ATGTTAGCCCCATGTTCTCC+TGG | + | chr6_4:75506711-75506730 | None:intergenic | 50.0% | |
| ACTATGCTACCCTGCTTGCT+GGG | - | chr6_4:75507339-75507358 | Msa0996820:intron | 50.0% | |
| !! | CTGGGCACTGAAGCTTAACT+AGG | - | chr6_4:75507357-75507376 | Msa0996820:intron | 50.0% |
| GCACTGAAGCTTAACTAGGC+TGG | - | chr6_4:75507361-75507380 | Msa0996820:intron | 50.0% | |
| GTACCCCTCCAGTATGAATC+AGG | - | chr6_4:75507404-75507423 | Msa0996820:intron | 50.0% | |
| GCACCTGATTCATACTGGAG+GGG | + | chr6_4:75507410-75507429 | None:intergenic | 50.0% | |
| ATCTCGAGTCCCCAAACCTT+TGG | - | chr6_4:75507950-75507969 | Msa0996820:CDS | 50.0% | |
| GACAGGTATGATCGTGCTAG+AGG | - | chr6_4:75508207-75508226 | Msa0996820:CDS | 50.0% | |
| GAGTGAAGGGAAGGTGAGAG+AGG | + | chr6_4:75502448-75502467 | None:intergenic | 55.0% | |
| ! | CTAGGGTTGTGATTCGGAGG+AGG | + | chr6_4:75502676-75502695 | None:intergenic | 55.0% |
| CTCCTCCGAATCACAACCCT+AGG | - | chr6_4:75502674-75502693 | Msa0996820:three_prime_UTR | 55.0% | |
| AGAGACGCGTGATGAATGCG+AGG | + | chr6_4:75502712-75502731 | None:intergenic | 55.0% | |
| CGGAGAAACCGTGTTCTGTG+AGG | + | chr6_4:75502805-75502824 | None:intergenic | 55.0% | |
| !! | GTTGGTGGTACACTCTACCC+TGG | - | chr6_4:75502875-75502894 | Msa0996820:intron | 55.0% |
| GAAATATGGGATTCGGGGGC+TGG | - | chr6_4:75503034-75503053 | Msa0996820:intron | 55.0% | |
| TATATGGTTTCGGCGTGGGG+TGG | - | chr6_4:75503235-75503254 | Msa0996820:intron | 55.0% | |
| ! | GGAGGTGCATTGTCGGTATG+CGG | - | chr6_4:75503918-75503937 | Msa0996820:CDS | 55.0% |
| GAGGTGCATTGTCGGTATGC+GGG | - | chr6_4:75503919-75503938 | Msa0996820:CDS | 55.0% | |
| CATGCCTACTCCCAAGGCAA+CGG | + | chr6_4:75504928-75504947 | None:intergenic | 55.0% | |
| AGATGCCATGCCTACTCCCA+AGG | + | chr6_4:75504934-75504953 | None:intergenic | 55.0% | |
| TTGGGAGTAGGCATGGCATC+TGG | - | chr6_4:75504933-75504952 | Msa0996820:CDS | 55.0% | |
| CTGAGCATCAGCCTACTGCT+TGG | - | chr6_4:75505042-75505061 | Msa0996820:CDS | 55.0% | |
| AAAGATGACCCTCTGGCCGT+GGG | + | chr6_4:75505956-75505975 | None:intergenic | 55.0% | |
| GAACACTCCACCAGATGCCA+AGG | - | chr6_4:75506011-75506030 | Msa0996820:CDS | 55.0% | |
| CGACACAGCACTTGCACATG+TGG | - | chr6_4:75506366-75506385 | Msa0996820:intron | 55.0% | |
| TAAGCAGGGCCAGGAGAACA+TGG | - | chr6_4:75506699-75506718 | Msa0996820:intron | 55.0% | |
| AAGCAGGGCCAGGAGAACAT+GGG | - | chr6_4:75506700-75506719 | Msa0996820:intron | 55.0% | |
| TGGATGGTGAGAATTGGCGG+TGG | - | chr6_4:75507053-75507072 | Msa0996820:intron | 55.0% | |
| GACTATGCTACCCTGCTTGC+TGG | - | chr6_4:75507338-75507357 | Msa0996820:intron | 55.0% | |
| GGATAAGGAGCTTACCCAGG+TGG | + | chr6_4:75507630-75507649 | None:intergenic | 55.0% | |
| CAGGGATAAGGAGCTTACCC+AGG | + | chr6_4:75507633-75507652 | None:intergenic | 55.0% | |
| AACTCTCCACGCCACTTGCT+TGG | - | chr6_4:75508611-75508630 | Msa0996820:five_prime_UTR | 55.0% | |
| TTCATGCCAAGCAAGTGGCG+TGG | + | chr6_4:75508620-75508639 | None:intergenic | 55.0% | |
| CCACCAACGATTCGACCGAG+TGG | + | chr6_4:75502863-75502882 | None:intergenic | 60.0% | |
| CCACTCGGTCGAATCGTTGG+TGG | - | chr6_4:75502860-75502879 | Msa0996820:intron | 60.0% | |
| !! | TTTGTCGTGGGCGTTGGCGT+CGG | - | chr6_4:75503198-75503217 | Msa0996820:intron | 60.0% |
| GGCACCAACACCAACTGCAC+TGG | + | chr6_4:75504907-75504926 | None:intergenic | 60.0% | |
| !! | TGGTGTTGGTGCCGTTGCCT+TGG | - | chr6_4:75504914-75504933 | Msa0996820:CDS | 60.0% |
| !! | GGTGTTGGTGCCGTTGCCTT+GGG | - | chr6_4:75504915-75504934 | Msa0996820:CDS | 60.0% |
| CGTTGCCTTGGGAGTAGGCA+TGG | - | chr6_4:75504926-75504945 | Msa0996820:CDS | 60.0% | |
| CAAAGATGACCCTCTGGCCG+TGG | + | chr6_4:75505957-75505976 | None:intergenic | 60.0% | |
| AGCAGGGCCAGGAGAACATG+GGG | - | chr6_4:75506701-75506720 | Msa0996820:intron | 60.0% | |
| GCTTCAGTGCCCAGCAAGCA+GGG | + | chr6_4:75507351-75507370 | None:intergenic | 60.0% | |
| AGCTTCAGTGCCCAGCAAGC+AGG | + | chr6_4:75507352-75507371 | None:intergenic | 60.0% | |
| TTCGGGGGCTGGGATTGTCG+CGG | - | chr6_4:75503045-75503064 | Msa0996820:intron | 65.0% | |
| GGGGAGTTTGTCGTGGGCGT+TGG | - | chr6_4:75503192-75503211 | Msa0996820:intron | 65.0% | |
| !!! | TGGGCGTTGGCGTCGGCTTT+TGG | - | chr6_4:75503205-75503224 | Msa0996820:intron | 65.0% |
| !! | GGTGCCGTTGCCTTGGGAGT+AGG | - | chr6_4:75504921-75504940 | Msa0996820:CDS | 65.0% |
| !! | TTGGCTGCAAGGGGTGCCCA+CGG | - | chr6_4:75505937-75505956 | Msa0996820:CDS | 65.0% |
| !! | AAGGGGTGCCCACGGCCAGA+GGG | - | chr6_4:75505945-75505964 | Msa0996820:CDS | 70.0% |
| !! | CAAGGGGTGCCCACGGCCAG+AGG | - | chr6_4:75505944-75505963 | Msa0996820:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 75502436 | 75508643 | 75502436 | ID=Msa0996820;Name=Msa0996820 |
| chr6_4 | mRNA | 75502436 | 75508643 | 75502436 | ID=Msa0996820-mRNA-1;Parent=Msa0996820;Name=Msa0996820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=145|1|1|1|1|1|6|302|727 |
| chr6_4 | exon | 75502436 | 75502867 | 75502436 | ID=Msa0996820-mRNA-1:exon:14147;Parent=Msa0996820-mRNA-1 |
| chr6_4 | exon | 75503445 | 75503504 | 75503445 | ID=Msa0996820-mRNA-1:exon:14146;Parent=Msa0996820-mRNA-1 |
| chr6_4 | exon | 75503911 | 75504033 | 75503911 | ID=Msa0996820-mRNA-1:exon:14145;Parent=Msa0996820-mRNA-1 |
| chr6_4 | exon | 75504826 | 75505280 | 75504826 | ID=Msa0996820-mRNA-1:exon:14144;Parent=Msa0996820-mRNA-1 |
| chr6_4 | exon | 75505718 | 75506254 | 75505718 | ID=Msa0996820-mRNA-1:exon:14143;Parent=Msa0996820-mRNA-1 |
| chr6_4 | exon | 75507620 | 75508643 | 75507620 | ID=Msa0996820-mRNA-1:exon:14142;Parent=Msa0996820-mRNA-1 |
| chr6_4 | five_prime_UTR | 75508499 | 75508643 | 75508499 | ID=Msa0996820-mRNA-1:five_prime_utr;Parent=Msa0996820-mRNA-1 |
| chr6_4 | CDS | 75507620 | 75508498 | 75507620 | ID=Msa0996820-mRNA-1:cds;Parent=Msa0996820-mRNA-1 |
| chr6_4 | CDS | 75505718 | 75506254 | 75505718 | ID=Msa0996820-mRNA-1:cds;Parent=Msa0996820-mRNA-1 |
| chr6_4 | CDS | 75504826 | 75505280 | 75504826 | ID=Msa0996820-mRNA-1:cds;Parent=Msa0996820-mRNA-1 |
| chr6_4 | CDS | 75503911 | 75504033 | 75503911 | ID=Msa0996820-mRNA-1:cds;Parent=Msa0996820-mRNA-1 |
| chr6_4 | CDS | 75503445 | 75503504 | 75503445 | ID=Msa0996820-mRNA-1:cds;Parent=Msa0996820-mRNA-1 |
| chr6_4 | CDS | 75502738 | 75502867 | 75502738 | ID=Msa0996820-mRNA-1:cds;Parent=Msa0996820-mRNA-1 |
| chr6_4 | three_prime_UTR | 75502436 | 75502737 | 75502436 | ID=Msa0996820-mRNA-1:three_prime_utr;Parent=Msa0996820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
