AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0756610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756610 MtrunA17_Chr5g0401771 97.956 587 12 0 1 587 1 587 0.0 1207
Msa0756610 MtrunA17_Chr1g0208241 61.375 611 197 14 5 587 22 621 0.0 734
Msa0756610 MtrunA17_Chr7g0218331 40.860 186 100 2 114 299 36 211 8.56e-43 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0756610 AT3G19420.1 61.993 592 186 13 21 587 34 611 0.0 729
Msa0756610 AT3G50110.1 61.607 560 173 9 39 587 104 632 0.0 674
Msa0756610 AT5G39400.1 41.398 186 99 2 114 299 34 209 7.08e-43 159

Find 150 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCAAATTTGTTAATATTC+AGG 0.209677 5_2:-10933728 Msa0756610:three_prime_UTR
AATGAACAACGACCACATTT+TGG 0.230127 5_2:+10935701 None:intergenic
GGGCAATTATGATCACTAAA+TGG 0.238609 5_2:+10935784 None:intergenic
GGCTTCACAAATGCCCTTAT+TGG 0.245308 5_2:-10935179 Msa0756610:CDS
GTGAATGATTCAATTATATT+AGG 0.246164 5_2:+10938515 None:intergenic
ATGTCAGATCCTTTGCTTGC+AGG 0.261001 5_2:+10934181 None:intergenic
ATGGATGGTCTAACCCAATA+AGG 0.293918 5_2:+10935165 None:intergenic
ACAGGAAGGTGGATTTGATT+TGG 0.308292 5_2:-10937647 Msa0756610:intron
GGATCATACCCACAGGTAAA+AGG 0.314391 5_2:-10933680 Msa0756610:three_prime_UTR
TGGGCGAGAAATCTGAAGTT+TGG 0.316797 5_2:-10938662 Msa0756610:CDS
CAGTTTCTAGTATATCTTCC+TGG 0.317240 5_2:-10938682 Msa0756610:CDS
TAAAAGGATCAGGCACATTA+TGG 0.329095 5_2:-10933664 Msa0756610:three_prime_UTR
TGCAACTGATTACAAATATA+TGG 0.332393 5_2:-10934029 Msa0756610:CDS
CCGTGCGTTCGTCATGCTGC+TGG 0.336679 5_2:+10933933 None:intergenic
GCTTCACAAATGCCCTTATT+GGG 0.348878 5_2:-10935178 Msa0756610:CDS
TTTGTCGAAGTGCATATTCA+TGG 0.351370 5_2:-10935738 Msa0756610:CDS
TTCCCTCCTTTGTGTTCCCT+TGG 0.354377 5_2:+10934054 None:intergenic
GGGCGAGAAATCTGAAGTTT+GGG 0.365437 5_2:-10938661 Msa0756610:CDS
GAGCTTGCTACGAGCAGTTC+AGG 0.368342 5_2:-10938548 Msa0756610:CDS
TAATTGAATCATTCACTAAA+GGG 0.369778 5_2:-10938508 Msa0756610:CDS
ATAATAGCTATGGGATTTCC+TGG 0.369907 5_2:-10937601 Msa0756610:CDS
ATTACAATTTCTGATCATAA+TGG 0.385783 5_2:-10935144 Msa0756610:intron
GATTCCATGTTGGTGGTGTT+AGG 0.387770 5_2:+10933854 None:intergenic
AATGATGCTATAAGTTGAAT+AGG 0.387784 5_2:+10935760 None:intergenic
ACCATTAGATCCTTTGTCTT+GGG 0.391614 5_2:+10935022 None:intergenic
GCATTTGAGTGACTCATTGA+TGG 0.391855 5_2:-10938795 Msa0756610:exon
GCATTGATCCAGAAATCTTC+TGG 0.391902 5_2:+10934918 None:intergenic
TGTCAGATCCTTTGCTTGCA+GGG 0.405115 5_2:+10934182 None:intergenic
TTCAATTATATTAGGTTGCT+CGG 0.413613 5_2:+10938523 None:intergenic
GGCAATTATGATCACTAAAT+GGG 0.416144 5_2:+10935785 None:intergenic
GATCCCAGCTCCAGGGTTCC+AGG 0.417514 5_2:-10934254 Msa0756610:CDS
ACCACCAACATGGAATCTAT+AGG 0.422090 5_2:-10933848 Msa0756610:CDS
AGTTTCATCTTACCTTCGTC+CGG 0.428921 5_2:+10935276 None:intergenic
AGAAACAATATGCCGTGCTT+TGG 0.429053 5_2:+10938445 None:intergenic
TCCCAAGACAAAGGATCTAA+TGG 0.429717 5_2:-10935023 Msa0756610:intron
GGTGTATGCTGAGAGGGTTT+CGG 0.429957 5_2:-10935200 Msa0756610:CDS
CCACCAACATGGAATCTATA+GGG 0.430392 5_2:-10933847 Msa0756610:CDS
ATAATTGAATCATTCACTAA+AGG 0.434744 5_2:-10938509 Msa0756610:CDS
TGTTCATTGTAAAGCTGGTA+TGG 0.435047 5_2:-10935686 Msa0756610:CDS
CACTGAAAATATAATAGCTA+TGG 0.435716 5_2:-10937611 Msa0756610:CDS
CAGGAAGATATACTAGAAAC+TGG 0.438818 5_2:+10938683 None:intergenic
CTCTTACTTGAATTAGATGT+TGG 0.439796 5_2:+10934133 None:intergenic
GACTATGATGGCACCCTACC+TGG 0.440326 5_2:-10934214 Msa0756610:CDS
TTTCTGGTTAAAGGAATCAA+TGG 0.442200 5_2:+10935484 None:intergenic
GACATAAATAATGTCTCATC+TGG 0.447201 5_2:-10934163 Msa0756610:CDS
AACCAGAAAAGATGTGTAGA+TGG 0.447224 5_2:-10935470 Msa0756610:CDS
TCTGTCAGACCTGGCTCCCC+TGG 0.450444 5_2:+10934864 None:intergenic
CAGAGAAAGATCCCAGCTCC+AGG 0.457657 5_2:-10934262 Msa0756610:CDS
TCGACCTGGAACCCTGGAGC+TGG 0.458519 5_2:+10934250 None:intergenic
CTCTTCAAAGGAAGCAGTAA+AGG 0.459094 5_2:-10938477 Msa0756610:CDS
TACCATTAGATCCTTTGTCT+TGG 0.463104 5_2:+10935021 None:intergenic
GGGTATGATCCCGGTGTAAA+GGG 0.466221 5_2:+10933692 None:intergenic
GGAGCCAGGTCTGACAGAAT+TGG 0.466471 5_2:-10934859 Msa0756610:CDS
CCCTATAGATTCCATGTTGG+TGG 0.466488 5_2:+10933847 None:intergenic
TATAGGGACAAGTGAATTCA+AGG 0.468706 5_2:-10933831 Msa0756610:CDS
TGGGTATGATCCCGGTGTAA+AGG 0.470067 5_2:+10933691 None:intergenic
ATCAATGGCTTCCTCAGCAG+TGG 0.477990 5_2:+10935499 None:intergenic
TTTACCTGTGGGTATGATCC+CGG 0.478369 5_2:+10933683 None:intergenic
ACAACTTCGACCTGGAACCC+TGG 0.483885 5_2:+10934244 None:intergenic
GCTCGTAGCAAGCTCATTTG+AGG 0.487048 5_2:+10938556 None:intergenic
GTCTTCGAAGATGGAGGAGC+GGG 0.487404 5_2:+10938770 None:intergenic
GCTCGTCTTACAAGTGGGAT+TGG 0.491539 5_2:-10938590 Msa0756610:CDS
TTTGCATTACCAGGGGAGCC+AGG 0.493421 5_2:-10934873 Msa0756610:CDS
ATCATTCACTAAAGGGTTGG+TGG 0.498981 5_2:-10938501 Msa0756610:CDS
TGGATCAATGCATCAAAGAA+AGG 0.505856 5_2:-10934906 Msa0756610:CDS
AAATTACTAACAATTTGACT+TGG 0.506905 5_2:+10935431 None:intergenic
TAAAGTTCAGTCTTCGAAGA+TGG 0.509153 5_2:+10938761 None:intergenic
ATCGACAGGGAGATTTCTAC+TGG 0.511246 5_2:-10934809 Msa0756610:intron
TACCCACAGGTAAAAGGATC+AGG 0.511997 5_2:-10933674 Msa0756610:three_prime_UTR
AGAAATCTGAAGTTTGGGGC+TGG 0.513911 5_2:-10938656 Msa0756610:CDS
GTCGTTGTTCATTGTAAAGC+TGG 0.516023 5_2:-10935691 Msa0756610:CDS
CTCGTAGCAAGCTCATTTGA+GGG 0.518109 5_2:+10938557 None:intergenic
AAGTGCATATTCATGGTTGA+AGG 0.518532 5_2:-10935731 Msa0756610:CDS
AATTACTAACAATTTGACTT+GGG 0.526266 5_2:+10935432 None:intergenic
TGGATGGTCTAACCCAATAA+GGG 0.541504 5_2:+10935166 None:intergenic
TGTGTATAGCCCTTTACACC+GGG 0.541866 5_2:-10933701 Msa0756610:three_prime_UTR
GCATTTGCTCGTCTTACAAG+TGG 0.541935 5_2:-10938596 Msa0756610:CDS
TGAATCATTCACTAAAGGGT+TGG 0.542994 5_2:-10938504 Msa0756610:CDS
ATTATGATCAGAAATTGTAA+TGG 0.543592 5_2:+10935146 None:intergenic
ACTGAAAATATAATAGCTAT+GGG 0.543686 5_2:-10937610 Msa0756610:CDS
AAACTTCATAATATTCATGC+AGG 0.544352 5_2:-10933878 Msa0756610:CDS
AGTTTCTAGTATATCTTCCT+GGG 0.544911 5_2:-10938681 Msa0756610:CDS
TCAAAATAAACGCAGATACC+AGG 0.545779 5_2:-10938423 Msa0756610:intron
AAAGCTGGTATGGGAAGGAC+AGG 0.551221 5_2:-10935676 Msa0756610:CDS
TCCACAGGTGTATGCTGAGA+GGG 0.552284 5_2:-10935206 Msa0756610:intron
GAAAAGATGTGTAGATGGAA+AGG 0.552661 5_2:-10935465 Msa0756610:CDS
GTTCATTGTAAAGCTGGTAT+GGG 0.554917 5_2:-10935685 Msa0756610:CDS
TGATCAGAAATTGTAATGGA+TGG 0.555457 5_2:+10935150 None:intergenic
GACCAAGGGAACACAAAGGA+GGG 0.557131 5_2:-10934056 Msa0756610:CDS
AGGCCACTACTGACCATGTA+GGG 0.559645 5_2:-10933988 Msa0756610:CDS
AGGGTTGGTGGACTCTTCAA+AGG 0.561799 5_2:-10938489 Msa0756610:CDS
GAGCGATGAAGAGGAGACCA+AGG 0.562238 5_2:-10934071 Msa0756610:CDS
TTACCTTAAGATACAAAAGA+AGG 0.562827 5_2:+10935638 None:intergenic
GATGCTATAAGTTGAATAGG+AGG 0.564724 5_2:+10935763 None:intergenic
TCAATGGCTTCCTCAGCAGT+GGG 0.569100 5_2:+10935500 None:intergenic
AATAAAACTATACCTTCCCC+TGG 0.569386 5_2:+10936793 None:intergenic
GTTTCATCTTACCTTCGTCC+GGG 0.569711 5_2:+10935277 None:intergenic
ATTCTCAGAGAGCGATGAAG+AGG 0.571302 5_2:-10934080 Msa0756610:CDS
AGGGATGTTGTCGCGCGCAA+CGG 0.573248 5_2:-10933969 Msa0756610:CDS
GGACGGAGAGGAACATCATA+CGG 0.575253 5_2:+10933556 None:intergenic
CATTTGCTCGTCTTACAAGT+GGG 0.577667 5_2:-10938595 Msa0756610:CDS
TTGTGTATAGCCCTTTACAC+CGG 0.577897 5_2:-10933702 Msa0756610:three_prime_UTR
AAACTTCAGATTTCTCGCCC+AGG 0.578026 5_2:+10938664 None:intergenic
CGCGCGACAACATCCCTACA+TGG 0.578706 5_2:+10933975 None:intergenic
AAAGTCAACCCTGCAAGCAA+AGG 0.578759 5_2:-10934190 Msa0756610:CDS
CTACCATCACAACTTCGACC+TGG 0.580131 5_2:+10934236 None:intergenic
AACTCTTTGTAACAGGAAGG+TGG 0.581611 5_2:-10937658 Msa0756610:intron
AGACCAAGGGAACACAAAGG+AGG 0.583368 5_2:-10934057 Msa0756610:CDS
CCAACCAATTCTGTCAGACC+TGG 0.594002 5_2:+10934855 None:intergenic
CGGACTTTAACACACTTCAA+CGG 0.596252 5_2:-10935310 Msa0756610:CDS
TATACAATCTTTGTTCAGAG+AGG 0.602650 5_2:-10936836 Msa0756610:CDS
TGTTAGAATGTCCTCAAGGA+CGG 0.603428 5_2:+10933539 None:intergenic
GACTGAGAACAGTGGCATGT+CGG 0.608063 5_2:-10938618 Msa0756610:CDS
CTAGAAACTGGTGACAAGGA+TGG 0.613708 5_2:+10938695 None:intergenic
GTTCCAGGTCGAAGTTGTGA+TGG 0.614063 5_2:-10934239 Msa0756610:CDS
TGTCCCTATAGATTCCATGT+TGG 0.614065 5_2:+10933844 None:intergenic
CATCCCTACATGGTCAGTAG+TGG 0.615666 5_2:+10933985 None:intergenic
GACAAGTCCAGCCCGGACGA+AGG 0.618832 5_2:-10935288 Msa0756610:intron
GAGGCCACTACTGACCATGT+AGG 0.621926 5_2:-10933989 Msa0756610:CDS
ATGCTATAAGTTGAATAGGA+GGG 0.622454 5_2:+10935764 None:intergenic
TGCATATTCATGGTTGAAGG+AGG 0.622487 5_2:-10935728 Msa0756610:CDS
TTTAGTCTTTGCATTACCAG+GGG 0.622542 5_2:-10934880 Msa0756610:CDS
CCAGAGCTAAAATCACCACC+AGG 0.625547 5_2:+10937583 None:intergenic
GGAACCTCATCAAGCATCTG+AGG 0.628106 5_2:-10934008 Msa0756610:CDS
TAGAAAGCATCCCAAGACAA+AGG 0.629907 5_2:-10935032 Msa0756610:CDS
CCAGGTCTGACAGAATTGGT+TGG 0.630334 5_2:-10934855 Msa0756610:CDS
ATTGTAAAGCTGGTATGGGA+AGG 0.630358 5_2:-10935681 Msa0756610:CDS
AGTTCAGTCTTCGAAGATGG+AGG 0.632879 5_2:+10938764 None:intergenic
GATGTTCCTCTCCGTCCTTG+AGG 0.635719 5_2:-10933550 Msa0756610:three_prime_UTR
AGAGAAAGATCCCAGCTCCA+GGG 0.638717 5_2:-10934261 Msa0756610:CDS
AGCGATGAAGAGGAGACCAA+GGG 0.640892 5_2:-10934070 Msa0756610:CDS
GGCGAGAAATCTGAAGTTTG+GGG 0.643756 5_2:-10938660 Msa0756610:CDS
TATACTAGAAACTGGTGACA+AGG 0.644336 5_2:+10938691 None:intergenic
AGGCAGTGCAGACCAAAGCA+CGG 0.648450 5_2:-10938457 Msa0756610:CDS
CCAGCAGCATGACGAACGCA+CGG 0.649232 5_2:-10933933 Msa0756610:CDS
GGGGTTCTATCGAAATCACA+TGG 0.653811 5_2:-10937458 Msa0756610:CDS
TTCCACAGGTGTATGCTGAG+AGG 0.654856 5_2:-10935207 Msa0756610:intron
AGGAGACCAAGGGAACACAA+AGG 0.655502 5_2:-10934060 Msa0756610:CDS
TGTTCAGAGAGGTTGTACGA+TGG 0.656307 5_2:-10936825 Msa0756610:CDS
AGTCTTCGAAGATGGAGGAG+CGG 0.657238 5_2:+10938769 None:intergenic
GAAGGAGGATATCCAAAATG+TGG 0.657507 5_2:-10935713 Msa0756610:CDS
AGGTCCTAACACCACCAACA+TGG 0.659756 5_2:-10933858 Msa0756610:CDS
GTGGCCTCAGATGCTTGATG+AGG 0.665913 5_2:+10934004 None:intergenic
TACACCGGGATCATACCCAC+AGG 0.673048 5_2:-10933687 Msa0756610:three_prime_UTR
GTTGTGATGGTAGACTATGA+TGG 0.676104 5_2:-10934226 Msa0756610:CDS
AGGGTGTTAGAATGTCCTCA+AGG 0.680168 5_2:+10933535 None:intergenic
GAATGTCCTCAAGGACGGAG+AGG 0.694257 5_2:+10933544 None:intergenic
CAATGGCTTCCTCAGCAGTG+GGG 0.728366 5_2:+10935501 None:intergenic
ATAGCTATGGGATTTCCTGG+TGG 0.733310 5_2:-10937598 Msa0756610:CDS
AACTCACAGACTGAGAACAG+TGG 0.745872 5_2:-10938626 Msa0756610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAATAAATGTTCA+TGG + chr5_2:10933984-10934003 None:intergenic 10.0%
!!! ATTTTTTATTTAAAAATGTC+TGG - chr5_2:10933997-10934016 Msa0756610:CDS 10.0%
!! TTAGTAAAATATAAATGATA+CGG - chr5_2:10935159-10935178 Msa0756610:CDS 10.0%
!! TATATTATGTTTAGAAAATA+TGG - chr5_2:10935969-10935988 Msa0756610:intron 10.0%
!!! AATTTTCTTTTATTTTTGTT+TGG - chr5_2:10936390-10936409 Msa0756610:intron 10.0%
!! TATTTAAATAAATTCTTCAT+TGG - chr5_2:10937664-10937683 Msa0756610:intron 10.0%
!! AATTTAAATAATAAAAATGC+AGG + chr5_2:10938723-10938742 None:intergenic 10.0%
!!! ATGTTTTTTATACTATTTTG+AGG + chr5_2:10934311-10934330 None:intergenic 15.0%
!!! ACAAAATTTTGAACTAATAT+GGG + chr5_2:10935826-10935845 None:intergenic 15.0%
!!! AACAAAATTTTGAACTAATA+TGG + chr5_2:10935827-10935846 None:intergenic 15.0%
!! ATGATAGTAAATATTAAGAA+AGG + chr5_2:10935860-10935879 None:intergenic 15.0%
!! TAATATTTACTATCATATAG+TGG - chr5_2:10935864-10935883 Msa0756610:intron 15.0%
!! TTTCTAAACATAATATATGA+TGG + chr5_2:10935966-10935985 None:intergenic 15.0%
!! TTGAATTATACATAATATTG+AGG - chr5_2:10936176-10936195 Msa0756610:intron 15.0%
!!! TTTTGTAAAAAATAAACTAG+CGG + chr5_2:10936450-10936469 None:intergenic 15.0%
!! TTCATCATTATAAAAACATT+TGG + chr5_2:10937732-10937751 None:intergenic 15.0%
!!! TATTTTTCAATGTTATTTTG+TGG - chr5_2:10937958-10937977 Msa0756610:intron 15.0%
!!! ATTTTTCAATGTTATTTTGT+GGG - chr5_2:10937959-10937978 Msa0756610:intron 15.0%
!! GTGAATGATTCAATTATATT+AGG + chr5_2:10933804-10933823 None:intergenic 20.0%
!! ATAATTGAATCATTCACTAA+AGG - chr5_2:10933807-10933826 Msa0756610:CDS 20.0%
!! TAATTGAATCATTCACTAAA+GGG - chr5_2:10933808-10933827 Msa0756610:CDS 20.0%
!! CATCTATTAAAGAATCAAAT+TGG - chr5_2:10934464-10934483 Msa0756610:intron 20.0%
!! ACTGAAAATATAATAGCTAT+GGG - chr5_2:10934706-10934725 Msa0756610:intron 20.0%
!! AATATAAATGATACGGAAAT+TGG - chr5_2:10935166-10935185 Msa0756610:CDS 20.0%
!! CTCAATTATAAATTACTGTT+TGG + chr5_2:10935244-10935263 None:intergenic 20.0%
!!! GTTTTATTATATTTGCACTA+TGG - chr5_2:10935538-10935557 Msa0756610:intron 20.0%
!!! TTTTTTTGAAGAACCTAAAT+TGG + chr5_2:10935935-10935954 None:intergenic 20.0%
!!! TTTTTATCTGTTTTATGCTA+TGG + chr5_2:10936347-10936366 None:intergenic 20.0%
!! AGCATAAAACAGATAAAAAT+TGG - chr5_2:10936348-10936367 Msa0756610:intron 20.0%
!!! TTTTGAAAATAATTACTTGC+TGG - chr5_2:10936773-10936792 Msa0756610:intron 20.0%
!! TTTGAAAATAATTACTTGCT+GGG - chr5_2:10936774-10936793 Msa0756610:intron 20.0%
!!! AATTACTAACAATTTGACTT+GGG + chr5_2:10936887-10936906 None:intergenic 20.0%
!! AAATTACTAACAATTTGACT+TGG + chr5_2:10936888-10936907 None:intergenic 20.0%
!!! TTTTTTAGTTTATCGTGTTA+AGG - chr5_2:10936906-10936925 Msa0756610:intron 20.0%
!!! GATATGTCAAATATTTTGAA+CGG - chr5_2:10936986-10937005 Msa0756610:intron 20.0%
!! ATTATGATCAGAAATTGTAA+TGG + chr5_2:10937173-10937192 None:intergenic 20.0%
!! ATTACAATTTCTGATCATAA+TGG - chr5_2:10937172-10937191 Msa0756610:intron 20.0%
!!! ACATTTTATTAATCTAGAGA+AGG - chr5_2:10937222-10937241 Msa0756610:intron 20.0%
!! AATGAGATATAAAAGTAAGT+TGG + chr5_2:10937373-10937392 None:intergenic 20.0%
!!! TCTTCTTTATCATTTTGATA+TGG - chr5_2:10937703-10937722 Msa0756610:intron 20.0%
!!! GTTCAAATTTGTTAATATTC+AGG - chr5_2:10938588-10938607 Msa0756610:CDS 20.0%
!!! GATTTGCAATATTTTGATAA+GGG + chr5_2:10938803-10938822 None:intergenic 20.0%
!! TTCAATTATATTAGGTTGCT+CGG + chr5_2:10933796-10933815 None:intergenic 25.0%
! AAGAAAATCATCTCATATAG+AGG - chr5_2:10934204-10934223 Msa0756610:CDS 25.0%
! TGTCTAACTAAGAATGTTAA+AGG + chr5_2:10934382-10934401 None:intergenic 25.0%
! ACATTCTTAGTTAGACAAAA+AGG - chr5_2:10934385-10934404 Msa0756610:intron 25.0%
! TCTTTAATAGATGAAGTCAA+AGG + chr5_2:10934457-10934476 None:intergenic 25.0%
!!! TGAGTCTATTGTATTTTGAA+TGG - chr5_2:10934563-10934582 Msa0756610:intron 25.0%
! AGAGAAAACTGAAATCAATA+TGG + chr5_2:10934625-10934644 None:intergenic 25.0%
! CACTGAAAATATAATAGCTA+TGG - chr5_2:10934705-10934724 Msa0756610:intron 25.0%
!!! ATTTTAGCTCTGGAATTTTT+GGG - chr5_2:10934743-10934762 Msa0756610:intron 25.0%
!! CATGGCATATATTTCAATTT+TGG - chr5_2:10934920-10934939 Msa0756610:CDS 25.0%
!! AAGTTTTCTTCTATATTCCA+AGG + chr5_2:10935050-10935069 None:intergenic 25.0%
!! ATATTTCTAAGCTATACGAA+GGG + chr5_2:10935108-10935127 None:intergenic 25.0%
!! GTTTCTTATGATTTGACTTT+AGG + chr5_2:10935136-10935155 None:intergenic 25.0%
!!! AAGTTTTCATCTAAAGTGTA+AGG + chr5_2:10935289-10935308 None:intergenic 25.0%
! TTACACTTTAGATGAAAACT+TGG - chr5_2:10935288-10935307 Msa0756610:intron 25.0%
! TAGACATGTAATAATCTTGA+TGG - chr5_2:10935581-10935600 Msa0756610:intron 25.0%
!! AATGATGCTATAAGTTGAAT+AGG + chr5_2:10936559-10936578 None:intergenic 25.0%
! TTACCTTAAGATACAAAAGA+AGG + chr5_2:10936681-10936700 None:intergenic 25.0%
! TTTCAAAATTGCACAATTCA+CGG + chr5_2:10936761-10936780 None:intergenic 25.0%
! AAATTAAGAAAAGCCTTCTT+TGG + chr5_2:10937085-10937104 None:intergenic 25.0%
!! AAAGAAGGCTTTTCTTAATT+TGG - chr5_2:10937084-10937103 Msa0756610:intron 25.0%
! TCAAATGTAGGCATAAAAAA+TGG + chr5_2:10937329-10937348 None:intergenic 25.0%
!!! TTTTTTATGCCTACATTTGA+TGG - chr5_2:10937329-10937348 Msa0756610:intron 25.0%
! GAAAAAGCTAAAGTATAAAG+TGG + chr5_2:10937560-10937579 None:intergenic 25.0%
!!! ATTAGTTCTGAAAAGAAACT+TGG - chr5_2:10937588-10937607 Msa0756610:CDS 25.0%
! AAATGATAAAGAAGACAAGT+AGG + chr5_2:10937698-10937717 None:intergenic 25.0%
!! GAGAACAGAAAAATTTTAGA+TGG - chr5_2:10937898-10937917 Msa0756610:intron 25.0%
! AAGAGTAAGATACCTAAAAA+TGG - chr5_2:10938201-10938220 Msa0756610:intron 25.0%
! TGCAACTGATTACAAATATA+TGG - chr5_2:10938287-10938306 Msa0756610:intron 25.0%
! AAACTTCATAATATTCATGC+AGG - chr5_2:10938438-10938457 Msa0756610:CDS 25.0%
! TAATAAAAATGCAGGAAAGA+AGG + chr5_2:10938715-10938734 None:intergenic 25.0%
!!! GGATTTGCAATATTTTGATA+AGG + chr5_2:10938804-10938823 None:intergenic 25.0%
!! AGTTTCTAGTATATCTTCCT+GGG - chr5_2:10933635-10933654 Msa0756610:three_prime_UTR 30.0%
TGACGTTGTATAAAGGATTT+AGG - chr5_2:10933958-10933977 Msa0756610:CDS 30.0%
!! TCATTTTTCCAATGCATGTA+TGG - chr5_2:10934166-10934185 Msa0756610:CDS 30.0%
AGAACTGCAAAATTGTGTAT+AGG - chr5_2:10934248-10934267 Msa0756610:CDS 30.0%
!! CAAATTGGTGTTGATTTCTT+AGG - chr5_2:10934479-10934498 Msa0756610:intron 30.0%
CACATTTAACTCTTTGTAAC+AGG - chr5_2:10934651-10934670 Msa0756610:intron 30.0%
TTTAACTCTTTGTAACAGGA+AGG - chr5_2:10934655-10934674 Msa0756610:intron 30.0%
!!! GATTTTAGCTCTGGAATTTT+TGG - chr5_2:10934742-10934761 Msa0756610:intron 30.0%
!!! GTTTTTTGAAACTCATCACA+AGG - chr5_2:10934894-10934913 Msa0756610:CDS 30.0%
! ATTTGCTAGTACTCAAGAAA+TGG - chr5_2:10934960-10934979 Msa0756610:intron 30.0%
TTTGCTAGTACTCAAGAAAT+GGG - chr5_2:10934961-10934980 Msa0756610:intron 30.0%
AAGGTTGTAAACTTGAAGAA+AGG + chr5_2:10935031-10935050 None:intergenic 30.0%
! TTTCTTCAAGTTTACAACCT+TGG - chr5_2:10935030-10935049 Msa0756610:CDS 30.0%
! GATATTTCTAAGCTATACGA+AGG + chr5_2:10935109-10935128 None:intergenic 30.0%
AGATGAAAACTTGGTATGTT+AGG - chr5_2:10935297-10935316 Msa0756610:CDS 30.0%
TATACAATCTTTGTTCAGAG+AGG - chr5_2:10935480-10935499 Msa0756610:CDS 30.0%
ACATGTAATAATCTTGATGG+TGG - chr5_2:10935584-10935603 Msa0756610:intron 30.0%
GATTCAAAATTACTAGAGAG+TGG + chr5_2:10935651-10935670 None:intergenic 30.0%
GGACAAATTCACAAATCAAA+AGG + chr5_2:10935752-10935771 None:intergenic 30.0%
ACAATCCCAAGAAATCAATA+GGG + chr5_2:10936494-10936513 None:intergenic 30.0%
AACAATCCCAAGAAATCAAT+AGG + chr5_2:10936495-10936514 None:intergenic 30.0%
GGCAATTATGATCACTAAAT+GGG + chr5_2:10936534-10936553 None:intergenic 30.0%
! ATGCTATAAGTTGAATAGGA+GGG + chr5_2:10936555-10936574 None:intergenic 30.0%
!! TTTCTGGTTAAAGGAATCAA+TGG + chr5_2:10936835-10936854 None:intergenic 30.0%
!!! TACACATCTTTTCTGGTTAA+AGG + chr5_2:10936844-10936863 None:intergenic 30.0%
! TGATCAGAAATTGTAATGGA+TGG + chr5_2:10937169-10937188 None:intergenic 30.0%
!! ATTTTAGTCTTTGCATTACC+AGG - chr5_2:10937434-10937453 Msa0756610:CDS 30.0%
!! TTTTAGTCTTTGCATTACCA+GGG - chr5_2:10937435-10937454 Msa0756610:CDS 30.0%
! AATTCATTTTCATGATCGAC+AGG - chr5_2:10937493-10937512 Msa0756610:intron 30.0%
! ATTCATTTTCATGATCGACA+GGG - chr5_2:10937494-10937513 Msa0756610:intron 30.0%
!! TTCTACTGGTTCGTTTAAAA+TGG - chr5_2:10937521-10937540 Msa0756610:intron 30.0%
! TTTAAAATGGCTACTTCTTC+AGG - chr5_2:10937534-10937553 Msa0756610:intron 30.0%
! GAGAATAAATCTGGAATGTA+TGG + chr5_2:10937774-10937793 None:intergenic 30.0%
AGCTTAGAAGAGAATAAATC+TGG + chr5_2:10937783-10937802 None:intergenic 30.0%
! CAGAAAAATTTTAGATGGCT+CGG - chr5_2:10937903-10937922 Msa0756610:intron 30.0%
GAAAAAGTTCAGTGAATCAA+CGG + chr5_2:10938006-10938025 None:intergenic 30.0%
GACATAAATAATGTCTCATC+TGG - chr5_2:10938153-10938172 Msa0756610:intron 30.0%
CTCTTACTTGAATTAGATGT+TGG + chr5_2:10938186-10938205 None:intergenic 30.0%
!! ACATCATCATCTCCATTTTT+AGG + chr5_2:10938216-10938235 None:intergenic 30.0%
!!! GATGCTTCAGTTTTTTCTTT+TGG - chr5_2:10938519-10938538 Msa0756610:CDS 30.0%
GTCATTTGACAACAAAAAAG+GGG + chr5_2:10938693-10938712 None:intergenic 30.0%
GGTCATTTGACAACAAAAAA+GGG + chr5_2:10938694-10938713 None:intergenic 30.0%
AGGTCATTTGACAACAAAAA+AGG + chr5_2:10938695-10938714 None:intergenic 30.0%
TAAAGTTCAGTCTTCGAAGA+TGG + chr5_2:10933558-10933577 None:intergenic 35.0%
TATACTAGAAACTGGTGACA+AGG + chr5_2:10933628-10933647 None:intergenic 35.0%
CAGGAAGATATACTAGAAAC+TGG + chr5_2:10933636-10933655 None:intergenic 35.0%
!! CAGTTTCTAGTATATCTTCC+TGG - chr5_2:10933634-10933653 Msa0756610:three_prime_UTR 35.0%
TGAATCATTCACTAAAGGGT+TGG - chr5_2:10933812-10933831 Msa0756610:CDS 35.0%
TCAAAATAAACGCAGATACC+AGG - chr5_2:10933893-10933912 Msa0756610:CDS 35.0%
GTGTAAATTGTTAACTGACC+TGG + chr5_2:10933914-10933933 None:intergenic 35.0%
TTATACAACGTCAGTAACAC+AGG + chr5_2:10933951-10933970 None:intergenic 35.0%
! GTGTTACTGACGTTGTATAA+AGG - chr5_2:10933951-10933970 Msa0756610:CDS 35.0%
! GTGTTGTTGAGGAACATTTA+TGG + chr5_2:10934029-10934048 None:intergenic 35.0%
! ACACAAAGTACCAAAACTTC+AGG - chr5_2:10934138-10934157 Msa0756610:CDS 35.0%
TTTCATAGCCATACATGCAT+TGG + chr5_2:10934177-10934196 None:intergenic 35.0%
!! TTGCAGTTCTAGTTTGTAAC+AGG + chr5_2:10934238-10934257 None:intergenic 35.0%
AAACATCTGCTTAGAATCCT+AGG - chr5_2:10934325-10934344 Msa0756610:intron 35.0%
CATATCAATTCTTCTGTAGG+AGG + chr5_2:10934358-10934377 None:intergenic 35.0%
GGACATATCAATTCTTCTGT+AGG + chr5_2:10934361-10934380 None:intergenic 35.0%
! TGATGATGCCTTTAACATGA+CGG + chr5_2:10934420-10934439 None:intergenic 35.0%
ATAATAGCTATGGGATTTCC+TGG - chr5_2:10934715-10934734 Msa0756610:intron 35.0%
!!! TGGAATTTTTGGGTACATTG+AGG - chr5_2:10934753-10934772 Msa0756610:intron 35.0%
ATGACTGAATCTGGTTATGA+GGG + chr5_2:10934804-10934823 None:intergenic 35.0%
! AATTGACTCATGACTGAATC+TGG + chr5_2:10934813-10934832 None:intergenic 35.0%
AAACTCATCACAAGGTAACA+TGG - chr5_2:10934902-10934921 Msa0756610:CDS 35.0%
TTTAGTCTCTTGAAACCTGT+AGG - chr5_2:10935445-10935464 Msa0756610:CDS 35.0%
TTAGTCTCTTGAAACCTGTA+GGG - chr5_2:10935446-10935465 Msa0756610:CDS 35.0%
ATACTTTGTACTTTCCCTAC+AGG + chr5_2:10935463-10935482 None:intergenic 35.0%
AATAAAACTATACCTTCCCC+TGG + chr5_2:10935526-10935545 None:intergenic 35.0%
ATTTGCACTATGGCACTAAT+TGG - chr5_2:10935548-10935567 Msa0756610:intron 35.0%
TCAAAATTACTAGAGAGTGG+CGG + chr5_2:10935648-10935667 None:intergenic 35.0%
TGAACATTTCATGCACTTCT+TGG - chr5_2:10935700-10935719 Msa0756610:CDS 35.0%
!! ATCATATAGTGGTGTTGACT+TGG - chr5_2:10935875-10935894 Msa0756610:intron 35.0%
!! TCATATAGTGGTGTTGACTT+GGG - chr5_2:10935876-10935895 Msa0756610:intron 35.0%
TATCAATAGTGAGTGTACAC+TGG + chr5_2:10936223-10936242 None:intergenic 35.0%
GATTTCTTGGGATTGTTTAC+AGG - chr5_2:10936498-10936517 Msa0756610:intron 35.0%
GGGCAATTATGATCACTAAA+TGG + chr5_2:10936535-10936554 None:intergenic 35.0%
! GATGCTATAAGTTGAATAGG+AGG + chr5_2:10936556-10936575 None:intergenic 35.0%
TTTGTCGAAGTGCATATTCA+TGG - chr5_2:10936578-10936597 Msa0756610:intron 35.0%
AAGTGCATATTCATGGTTGA+AGG - chr5_2:10936585-10936604 Msa0756610:intron 35.0%
! AATGAACAACGACCACATTT+TGG + chr5_2:10936618-10936637 None:intergenic 35.0%
TGTTCATTGTAAAGCTGGTA+TGG - chr5_2:10936630-10936649 Msa0756610:intron 35.0%
GTTCATTGTAAAGCTGGTAT+GGG - chr5_2:10936631-10936650 Msa0756610:intron 35.0%
! CAGCCTTCTTTTGTATCTTA+AGG - chr5_2:10936675-10936694 Msa0756610:intron 35.0%
AACCAGAAAAGATGTGTAGA+TGG - chr5_2:10936846-10936865 Msa0756610:CDS 35.0%
! TTCCATCTACACATCTTTTC+TGG + chr5_2:10936851-10936870 None:intergenic 35.0%
GAAAAGATGTGTAGATGGAA+AGG - chr5_2:10936851-10936870 Msa0756610:CDS 35.0%
CAATGTACCAAATCCAAAGA+AGG - chr5_2:10937069-10937088 Msa0756610:intron 35.0%
AGAAAAGCCTTCTTTGGATT+TGG + chr5_2:10937079-10937098 None:intergenic 35.0%
! TTCTTAATTTGGACTTCCAC+AGG - chr5_2:10937095-10937114 Msa0756610:intron 35.0%
TGATGTCTTCACTTATTCTC+AGG - chr5_2:10937246-10937265 Msa0756610:intron 35.0%
ACCATTAGATCCTTTGTCTT+GGG + chr5_2:10937297-10937316 None:intergenic 35.0%
TACCATTAGATCCTTTGTCT+TGG + chr5_2:10937298-10937317 None:intergenic 35.0%
! ATTTTCAGCCAGAAGATTTC+TGG - chr5_2:10937390-10937409 Msa0756610:intron 35.0%
TGGATCAATGCATCAAAGAA+AGG - chr5_2:10937410-10937429 Msa0756610:intron 35.0%
! TTTAGTCTTTGCATTACCAG+GGG - chr5_2:10937436-10937455 Msa0756610:CDS 35.0%
CTTCTAAGCTGTGTAATGTA+TGG - chr5_2:10937793-10937812 Msa0756610:intron 35.0%
TTAATACGTCAGTTTCTCCT+TGG - chr5_2:10937850-10937869 Msa0756610:intron 35.0%
!! GGATCTTGATGATTTTGACA+AGG - chr5_2:10937924-10937943 Msa0756610:intron 35.0%
TATAGGGACAAGTGAATTCA+AGG - chr5_2:10938485-10938504 Msa0756610:CDS 35.0%
!! AGATTTTGAGAGTGATTGAG+AGG - chr5_2:10938548-10938567 Msa0756610:CDS 35.0%
TAAAAGGATCAGGCACATTA+TGG - chr5_2:10938652-10938671 Msa0756610:CDS 35.0%
GCATTTGAGTGACTCATTGA+TGG - chr5_2:10933521-10933540 Msa0756610:three_prime_UTR 40.0%
! ATTTTCAGCAGGTACTTTGG+CGG + chr5_2:10933583-10933602 None:intergenic 40.0%
!! GTCATTTTCAGCAGGTACTT+TGG + chr5_2:10933586-10933605 None:intergenic 40.0%
CATTTGCTCGTCTTACAAGT+GGG - chr5_2:10933721-10933740 Msa0756610:three_prime_UTR 40.0%
ATCATTCACTAAAGGGTTGG+TGG - chr5_2:10933815-10933834 Msa0756610:CDS 40.0%
CTCTTCAAAGGAAGCAGTAA+AGG - chr5_2:10933839-10933858 Msa0756610:CDS 40.0%
AGAAACAATATGCCGTGCTT+TGG + chr5_2:10933874-10933893 None:intergenic 40.0%
AACACAGGCAAAATTGAAGC+AGG + chr5_2:10933936-10933955 None:intergenic 40.0%
! TTTACAAGAGCGTGTTGTTG+AGG + chr5_2:10934040-10934059 None:intergenic 40.0%
! AATGAGTGTGCCTGAAGTTT+TGG + chr5_2:10934151-10934170 None:intergenic 40.0%
CTGTAGGAGGTAATAAACCT+AGG + chr5_2:10934345-10934364 None:intergenic 40.0%
ATGATGCCTTTAACATGACG+GGG + chr5_2:10934418-10934437 None:intergenic 40.0%
GATGATGCCTTTAACATGAC+GGG + chr5_2:10934419-10934438 None:intergenic 40.0%
AACTCTTTGTAACAGGAAGG+TGG - chr5_2:10934658-10934677 Msa0756610:intron 40.0%
! ACAGGAAGGTGGATTTGATT+TGG - chr5_2:10934669-10934688 Msa0756610:intron 40.0%
TGACTGAATCTGGTTATGAG+GGG + chr5_2:10934803-10934822 None:intergenic 40.0%
CATGACTGAATCTGGTTATG+AGG + chr5_2:10934805-10934824 None:intergenic 40.0%
TTAAGAGAGAACTGTGTTGC+AGG - chr5_2:10934837-10934856 Msa0756610:CDS 40.0%
TAAGAGAGAACTGTGTTGCA+GGG - chr5_2:10934838-10934857 Msa0756610:CDS 40.0%
AGCTATACGAAGGGATATAC+TGG + chr5_2:10935099-10935118 None:intergenic 40.0%
!! TACGATGGATCACTTTTCCA+GGG - chr5_2:10935506-10935525 Msa0756610:CDS 40.0%
TTAGACTATGTTCCAGTTGG+AGG + chr5_2:10935621-10935640 None:intergenic 40.0%
TGGTTAGACTATGTTCCAGT+TGG + chr5_2:10935624-10935643 None:intergenic 40.0%
GCATCACAACTCAAAACTGA+TGG + chr5_2:10935773-10935792 None:intergenic 40.0%
CTAAGAGTCTGTGAAACTAG+AGG + chr5_2:10936052-10936071 None:intergenic 40.0%
! CTCTAGTTTCACAGACTCTT+AGG - chr5_2:10936050-10936069 Msa0756610:intron 40.0%
!! GTCTGCCCTATTGATTTCTT+GGG - chr5_2:10936486-10936505 Msa0756610:intron 40.0%
TGCATATTCATGGTTGAAGG+AGG - chr5_2:10936588-10936607 Msa0756610:intron 40.0%
GAAGGAGGATATCCAAAATG+TGG - chr5_2:10936603-10936622 Msa0756610:intron 40.0%
GTCGTTGTTCATTGTAAAGC+TGG - chr5_2:10936625-10936644 Msa0756610:intron 40.0%
ATTGTAAAGCTGGTATGGGA+AGG - chr5_2:10936635-10936654 Msa0756610:intron 40.0%
AGTTTCATCTTACCTTCGTC+CGG + chr5_2:10937043-10937062 None:intergenic 40.0%
GCTTCACAAATGCCCTTATT+GGG - chr5_2:10937138-10937157 Msa0756610:intron 40.0%
TGGATGGTCTAACCCAATAA+GGG + chr5_2:10937153-10937172 None:intergenic 40.0%
ATGGATGGTCTAACCCAATA+AGG + chr5_2:10937154-10937173 None:intergenic 40.0%
!! TAGAAAGCATCCCAAGACAA+AGG - chr5_2:10937284-10937303 Msa0756610:intron 40.0%
TCCCAAGACAAAGGATCTAA+TGG - chr5_2:10937293-10937312 Msa0756610:intron 40.0%
ATGCGTGTACCATCAAATGT+AGG + chr5_2:10937341-10937360 None:intergenic 40.0%
! GCATTGATCCAGAAATCTTC+TGG + chr5_2:10937401-10937420 None:intergenic 40.0%
GTTGTGATGGTAGACTATGA+TGG - chr5_2:10938090-10938109 Msa0756610:intron 40.0%
ACCACCAACATGGAATCTAT+AGG - chr5_2:10938468-10938487 Msa0756610:CDS 40.0%
CCACCAACATGGAATCTATA+GGG - chr5_2:10938469-10938488 Msa0756610:CDS 40.0%
TGTCCCTATAGATTCCATGT+TGG + chr5_2:10938475-10938494 None:intergenic 40.0%
!! TTTTGAGAGTGATTGAGAGG+AGG - chr5_2:10938551-10938570 Msa0756610:CDS 40.0%
TTGTGTATAGCCCTTTACAC+CGG - chr5_2:10938614-10938633 Msa0756610:CDS 40.0%
TGTTAGAATGTCCTCAAGGA+CGG + chr5_2:10938780-10938799 None:intergenic 40.0%
AGTTCAGTCTTCGAAGATGG+AGG + chr5_2:10933555-10933574 None:intergenic 45.0%
!!! CGTGCATTGTCATTTTCAGC+AGG + chr5_2:10933594-10933613 None:intergenic 45.0%
CTAGAAACTGGTGACAAGGA+TGG + chr5_2:10933624-10933643 None:intergenic 45.0%
AAACTTCAGATTTCTCGCCC+AGG + chr5_2:10933655-10933674 None:intergenic 45.0%
! TGGGCGAGAAATCTGAAGTT+TGG - chr5_2:10933654-10933673 Msa0756610:three_prime_UTR 45.0%
! GGGCGAGAAATCTGAAGTTT+GGG - chr5_2:10933655-10933674 Msa0756610:three_prime_UTR 45.0%
! GGCGAGAAATCTGAAGTTTG+GGG - chr5_2:10933656-10933675 Msa0756610:three_prime_UTR 45.0%
! AGAAATCTGAAGTTTGGGGC+TGG - chr5_2:10933660-10933679 Msa0756610:three_prime_UTR 45.0%
AACTCACAGACTGAGAACAG+TGG - chr5_2:10933690-10933709 Msa0756610:three_prime_UTR 45.0%
GCATTTGCTCGTCTTACAAG+TGG - chr5_2:10933720-10933739 Msa0756610:three_prime_UTR 45.0%
CTCGTAGCAAGCTCATTTGA+GGG + chr5_2:10933762-10933781 None:intergenic 45.0%
ATAGCTATGGGATTTCCTGG+TGG - chr5_2:10934718-10934737 Msa0756610:intron 45.0%
AAGAGAGAACTGTGTTGCAG+GGG - chr5_2:10934839-10934858 Msa0756610:CDS 45.0%
GGGGTTCTATCGAAATCACA+TGG - chr5_2:10934858-10934877 Msa0756610:CDS 45.0%
TTGCTGTATGAGCTTGTAGG+TGG + chr5_2:10935221-10935240 None:intergenic 45.0%
TGGTTGCTGTATGAGCTTGT+AGG + chr5_2:10935224-10935243 None:intergenic 45.0%
TGTTCAGAGAGGTTGTACGA+TGG - chr5_2:10935491-10935510 Msa0756610:CDS 45.0%
!! GTACGATGGATCACTTTTCC+AGG - chr5_2:10935505-10935524 Msa0756610:CDS 45.0%
!! ACGATGGATCACTTTTCCAG+GGG - chr5_2:10935507-10935526 Msa0756610:CDS 45.0%
TCCAGTTGGAGGCAAATGAT+GGG + chr5_2:10935610-10935629 None:intergenic 45.0%
TTCCAGTTGGAGGCAAATGA+TGG + chr5_2:10935611-10935630 None:intergenic 45.0%
! AATTACTAGAGAGTGGCGGA+TGG + chr5_2:10935644-10935663 None:intergenic 45.0%
!! CGTCTGCCCTATTGATTTCT+TGG - chr5_2:10936485-10936504 Msa0756610:intron 45.0%
! GAGTTGACTTCAGAGACTTG+AGG - chr5_2:10936708-10936727 Msa0756610:intron 45.0%
GTTTCATCTTACCTTCGTCC+GGG + chr5_2:10937042-10937061 None:intergenic 45.0%
GGCTTCACAAATGCCCTTAT+TGG - chr5_2:10937137-10937156 Msa0756610:intron 45.0%
ATCGACAGGGAGATTTCTAC+TGG - chr5_2:10937507-10937526 Msa0756610:intron 45.0%
TTGTGTTCATCCAACTGCCA+AGG + chr5_2:10937870-10937889 None:intergenic 45.0%
AGCTGGGATCTTTCTCTGAA+GGG + chr5_2:10938052-10938071 None:intergenic 45.0%
!! AGGGTTGACTTTTCCAGGTA+GGG + chr5_2:10938118-10938137 None:intergenic 45.0%
AAAGTCAACCCTGCAAGCAA+AGG - chr5_2:10938126-10938145 Msa0756610:intron 45.0%
TGTCAGATCCTTTGCTTGCA+GGG + chr5_2:10938137-10938156 None:intergenic 45.0%
ATGTCAGATCCTTTGCTTGC+AGG + chr5_2:10938138-10938157 None:intergenic 45.0%
ATTCTCAGAGAGCGATGAAG+AGG - chr5_2:10938236-10938255 Msa0756610:intron 45.0%
!! GATTCCATGTTGGTGGTGTT+AGG + chr5_2:10938465-10938484 None:intergenic 45.0%
CCCTATAGATTCCATGTTGG+TGG + chr5_2:10938472-10938491 None:intergenic 45.0%
TGTGTATAGCCCTTTACACC+GGG - chr5_2:10938615-10938634 Msa0756610:CDS 45.0%
TTTACCTGTGGGTATGATCC+CGG + chr5_2:10938636-10938655 None:intergenic 45.0%
GGATCATACCCACAGGTAAA+AGG - chr5_2:10938636-10938655 Msa0756610:CDS 45.0%
TACCCACAGGTAAAAGGATC+AGG - chr5_2:10938642-10938661 Msa0756610:CDS 45.0%
! TGCCTGATCCTTTTACCTGT+GGG + chr5_2:10938647-10938666 None:intergenic 45.0%
! AGGGTGTTAGAATGTCCTCA+AGG + chr5_2:10938784-10938803 None:intergenic 45.0%
AGTCTTCGAAGATGGAGGAG+CGG + chr5_2:10933550-10933569 None:intergenic 50.0%
GACTGAGAACAGTGGCATGT+CGG - chr5_2:10933698-10933717 Msa0756610:three_prime_UTR 50.0%
GCTCGTCTTACAAGTGGGAT+TGG - chr5_2:10933726-10933745 Msa0756610:three_prime_UTR 50.0%
GCTCGTAGCAAGCTCATTTG+AGG + chr5_2:10933763-10933782 None:intergenic 50.0%
!! AGGGTTGGTGGACTCTTCAA+AGG - chr5_2:10933827-10933846 Msa0756610:CDS 50.0%
CGTGTTCCCCGTCATGTTAA+AGG - chr5_2:10934409-10934428 Msa0756610:CDS 50.0%
CCAGAGCTAAAATCACCACC+AGG + chr5_2:10934736-10934755 None:intergenic 50.0%
!!! CCTGGTGGTGATTTTAGCTC+TGG - chr5_2:10934733-10934752 Msa0756610:intron 50.0%
!! TGGATCACTTTTCCAGGGGA+AGG - chr5_2:10935511-10935530 Msa0756610:intron 50.0%
!! CAAGGTCTCGGTGCCAATTT+AGG - chr5_2:10935919-10935938 Msa0756610:intron 50.0%
CACGAGACTGAGACTTCTGA+AGG - chr5_2:10936269-10936288 Msa0756610:intron 50.0%
AAAGCTGGTATGGGAAGGAC+AGG - chr5_2:10936640-10936659 Msa0756610:intron 50.0%
TCAATGGCTTCCTCAGCAGT+GGG + chr5_2:10936819-10936838 None:intergenic 50.0%
ATCAATGGCTTCCTCAGCAG+TGG + chr5_2:10936820-10936839 None:intergenic 50.0%
TTCCACAGGTGTATGCTGAG+AGG - chr5_2:10937109-10937128 Msa0756610:intron 50.0%
TCCACAGGTGTATGCTGAGA+GGG - chr5_2:10937110-10937129 Msa0756610:intron 50.0%
GGTGTATGCTGAGAGGGTTT+CGG - chr5_2:10937116-10937135 Msa0756610:intron 50.0%
CCAACCAATTCTGTCAGACC+TGG + chr5_2:10937464-10937483 None:intergenic 50.0%
CCAGGTCTGACAGAATTGGT+TGG - chr5_2:10937461-10937480 Msa0756610:intron 50.0%
CTGGAATGTATGGCAGAGCT+GGG + chr5_2:10937764-10937783 None:intergenic 50.0%
! TCTGGAATGTATGGCAGAGC+TGG + chr5_2:10937765-10937784 None:intergenic 50.0%
GTCAGTTTCTCCTTGGCAGT+TGG - chr5_2:10937857-10937876 Msa0756610:intron 50.0%
GAGCTGGGATCTTTCTCTGA+AGG + chr5_2:10938053-10938072 None:intergenic 50.0%
AGAGAAAGATCCCAGCTCCA+GGG - chr5_2:10938055-10938074 Msa0756610:intron 50.0%
GTTCCAGGTCGAAGTTGTGA+TGG - chr5_2:10938077-10938096 Msa0756610:intron 50.0%
CTACCATCACAACTTCGACC+TGG + chr5_2:10938083-10938102 None:intergenic 50.0%
!! CAGGGTTGACTTTTCCAGGT+AGG + chr5_2:10938119-10938138 None:intergenic 50.0%
!! CTTGCAGGGTTGACTTTTCC+AGG + chr5_2:10938123-10938142 None:intergenic 50.0%
AGCGATGAAGAGGAGACCAA+GGG - chr5_2:10938246-10938265 Msa0756610:intron 50.0%
AGGAGACCAAGGGAACACAA+AGG - chr5_2:10938256-10938275 Msa0756610:intron 50.0%
AGACCAAGGGAACACAAAGG+AGG - chr5_2:10938259-10938278 Msa0756610:intron 50.0%
GACCAAGGGAACACAAAGGA+GGG - chr5_2:10938260-10938279 Msa0756610:intron 50.0%
TTCCCTCCTTTGTGTTCCCT+TGG + chr5_2:10938265-10938284 None:intergenic 50.0%
GGAACCTCATCAAGCATCTG+AGG - chr5_2:10938308-10938327 Msa0756610:intron 50.0%
AGGCCACTACTGACCATGTA+GGG - chr5_2:10938328-10938347 Msa0756610:intron 50.0%
CATCCCTACATGGTCAGTAG+TGG + chr5_2:10938334-10938353 None:intergenic 50.0%
AGGTCCTAACACCACCAACA+TGG - chr5_2:10938458-10938477 Msa0756610:CDS 50.0%
GGGTATGATCCCGGTGTAAA+GGG + chr5_2:10938627-10938646 None:intergenic 50.0%
TGGGTATGATCCCGGTGTAA+AGG + chr5_2:10938628-10938647 None:intergenic 50.0%
! GTGCCTGATCCTTTTACCTG+TGG + chr5_2:10938648-10938667 None:intergenic 50.0%
GGACGGAGAGGAACATCATA+CGG + chr5_2:10938763-10938782 None:intergenic 50.0%
GTCTTCGAAGATGGAGGAGC+GGG + chr5_2:10933549-10933568 None:intergenic 55.0%
!! GAGCTTGCTACGAGCAGTTC+AGG - chr5_2:10933768-10933787 Msa0756610:exon 55.0%
AGGCAGTGCAGACCAAAGCA+CGG - chr5_2:10933859-10933878 Msa0756610:CDS 55.0%
GCCCATCATTTGCCTCCAAC+TGG - chr5_2:10935606-10935625 Msa0756610:intron 55.0%
!! GTGGTGTTGACTTGGGACCT+TGG - chr5_2:10935883-10935902 Msa0756610:intron 55.0%
CTTGAGAGGAGGACACTCCA+AGG + chr5_2:10935903-10935922 None:intergenic 55.0%
! CTTGGAGTGTCCTCCTCTCA+AGG - chr5_2:10935901-10935920 Msa0756610:intron 55.0%
GTGTCCTCCTCTCAAGGTCT+CGG - chr5_2:10935907-10935926 Msa0756610:intron 55.0%
! ATTGGCACCGAGACCTTGAG+AGG + chr5_2:10935917-10935936 None:intergenic 55.0%
! GCAGTTTTTCCCCACTGCTG+AGG - chr5_2:10936806-10936825 Msa0756610:CDS 55.0%
CAATGGCTTCCTCAGCAGTG+GGG + chr5_2:10936818-10936837 None:intergenic 55.0%
TTCAACGGACAAGTCCAGCC+CGG - chr5_2:10937021-10937040 Msa0756610:intron 55.0%
ACCCTCTCAGCATACACCTG+TGG + chr5_2:10937114-10937133 None:intergenic 55.0%
TTTGCATTACCAGGGGAGCC+AGG - chr5_2:10937443-10937462 Msa0756610:CDS 55.0%
GGAGCCAGGTCTGACAGAAT+TGG - chr5_2:10937457-10937476 Msa0756610:CDS 55.0%
CAGAGAAAGATCCCAGCTCC+AGG - chr5_2:10938054-10938073 Msa0756610:intron 55.0%
ACAACTTCGACCTGGAACCC+TGG + chr5_2:10938075-10938094 None:intergenic 55.0%
GACTATGATGGCACCCTACC+TGG - chr5_2:10938102-10938121 Msa0756610:intron 55.0%
GAGCGATGAAGAGGAGACCA+AGG - chr5_2:10938245-10938264 Msa0756610:intron 55.0%
GTGGCCTCAGATGCTTGATG+AGG + chr5_2:10938315-10938334 None:intergenic 55.0%
GAGGCCACTACTGACCATGT+AGG - chr5_2:10938327-10938346 Msa0756610:intron 55.0%
TACACCGGGATCATACCCAC+AGG - chr5_2:10938629-10938648 Msa0756610:CDS 55.0%
GATGTTCCTCTCCGTCCTTG+AGG - chr5_2:10938766-10938785 Msa0756610:CDS 55.0%
GAATGTCCTCAAGGACGGAG+AGG + chr5_2:10938775-10938794 None:intergenic 55.0%
CATCTTACCTTCGTCCGGGC+TGG + chr5_2:10937038-10937057 None:intergenic 60.0%
CGCGCGACAACATCCCTACA+TGG + chr5_2:10938344-10938363 None:intergenic 60.0%
AGGGATGTTGTCGCGCGCAA+CGG - chr5_2:10938347-10938366 Msa0756610:intron 60.0%
CCAGCAGCATGACGAACGCA+CGG - chr5_2:10938383-10938402 Msa0756610:intron 60.0%
! GGCACCGAGACCTTGAGAGG+AGG + chr5_2:10935914-10935933 None:intergenic 65.0%
GACAAGTCCAGCCCGGACGA+AGG - chr5_2:10937028-10937047 Msa0756610:intron 65.0%
TCTGTCAGACCTGGCTCCCC+TGG + chr5_2:10937455-10937474 None:intergenic 65.0%
GATCCCAGCTCCAGGGTTCC+AGG - chr5_2:10938062-10938081 Msa0756610:intron 65.0%
CGACCTGGAACCCTGGAGCT+GGG + chr5_2:10938068-10938087 None:intergenic 65.0%
TCGACCTGGAACCCTGGAGC+TGG + chr5_2:10938069-10938088 None:intergenic 65.0%
CCGTGCGTTCGTCATGCTGC+TGG + chr5_2:10938386-10938405 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 10933514 10938824 10933514 ID=Msa0756610;Name=Msa0756610
chr5_2 mRNA 10933514 10938824 10933514 ID=Msa0756610-mRNA-1;Parent=Msa0756610;Name=Msa0756610-mRNA-1;_AED=0.11;_eAED=0.11;_QI=26|1|1|1|1|1|12|258|587
chr5_2 exon 10933514 10934281 10933514 ID=Msa0756610-mRNA-1:exon:4948;Parent=Msa0756610-mRNA-1
chr5_2 exon 10934393 10934462 10934393 ID=Msa0756610-mRNA-1:exon:4947;Parent=Msa0756610-mRNA-1
chr5_2 exon 10934810 10934940 10934810 ID=Msa0756610-mRNA-1:exon:4946;Parent=Msa0756610-mRNA-1
chr5_2 exon 10935024 10935070 10935024 ID=Msa0756610-mRNA-1:exon:4945;Parent=Msa0756610-mRNA-1
chr5_2 exon 10935145 10935221 10935145 ID=Msa0756610-mRNA-1:exon:4944;Parent=Msa0756610-mRNA-1
chr5_2 exon 10935289 10935353 10935289 ID=Msa0756610-mRNA-1:exon:4943;Parent=Msa0756610-mRNA-1
chr5_2 exon 10935442 10935528 10935442 ID=Msa0756610-mRNA-1:exon:4942;Parent=Msa0756610-mRNA-1
chr5_2 exon 10935642 10935818 10935642 ID=Msa0756610-mRNA-1:exon:4941;Parent=Msa0756610-mRNA-1
chr5_2 exon 10936806 10936871 10936806 ID=Msa0756610-mRNA-1:exon:4940;Parent=Msa0756610-mRNA-1
chr5_2 exon 10937423 10937479 10937423 ID=Msa0756610-mRNA-1:exon:4939;Parent=Msa0756610-mRNA-1
chr5_2 exon 10937564 10937665 10937564 ID=Msa0756610-mRNA-1:exon:4938;Parent=Msa0756610-mRNA-1
chr5_2 exon 10938424 10938824 10938424 ID=Msa0756610-mRNA-1:exon:4937;Parent=Msa0756610-mRNA-1
chr5_2 five_prime_UTR 10938799 10938824 10938799 ID=Msa0756610-mRNA-1:five_prime_utr;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10938424 10938798 10938424 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10937564 10937665 10937564 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10937423 10937479 10937423 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10936806 10936871 10936806 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10935642 10935818 10935642 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10935442 10935528 10935442 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10935289 10935353 10935289 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10935145 10935221 10935145 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10935024 10935070 10935024 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10934810 10934940 10934810 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10934393 10934462 10934393 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 CDS 10933772 10934281 10933772 ID=Msa0756610-mRNA-1:cds;Parent=Msa0756610-mRNA-1
chr5_2 three_prime_UTR 10933514 10933771 10933514 ID=Msa0756610-mRNA-1:three_prime_utr;Parent=Msa0756610-mRNA-1
Gene Sequence

>Msa0756610

ATGGAACCCGCTCCTCCATCTTCGAAGACTGAACTTTACTCCGCCAAAGTACCTGCTGAAAATGACAATGCACGTGATTCACCATCCTTGTCACCAGTTTCTAGTATATCTTCCTGGGCGAGAAATCTGAAGTTTGGGGCTGGAGATCAGAACTCACAGACTGAGAACAGTGGCATGTCGGCATTTGCTCGTCTTACAAGTGGGATTGGACTACGAAGTCCCTCAAATGAGCTTGCTACGAGCAGTTCAGGAGCCGAGCAACCTAATATAATTGAATCATTCACTAAAGGGTTGGTGGACTCTTCAAAGGAAGCAGTAAAGGCAGTGCAGACCAAAGCACGGCATATTGTTTCTCAAAATAAACGCAGATACCAGGAAGGTGGATTTGATTTGGATATGACATACATCACTGAAAATATAATAGCTATGGGATTTCCTGGTGGTGATTTTAGCTCTGGAATTTTTGGGTACATTGAGGGGTTCTATCGAAATCACATGGAAGAAGTAATCAAGTTTTTTGAAACTCATCACAAGGGAAAGTACAAAGTATACAATCTTTGTTCAGAGAGGTTGTACGATGGATCACTTTTCCAGGGGAAGGTTGCAAGTTTCCCATTTAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCGAAGTGCATATTCATGGTTGAAGGAGGATATCCAAAATGTGGTCGTTGTTCATTGTAAAGCTGGTATGGGAAGGACAGGACTGATGATTTGCAGCCTTCTTTTGTATCTTAAGTTTTTCCCCACTGCTGAGGAAGCCATTGATTCCTTTAACCAGAAAAGATGTGTAGATGGAAAGGCTCTAACTCTCCCAAGTCAAATTAGATATGTCAAATATTTTGAACGGACTTTAACACACTTCAACGGACAAGTCCAGCCCGGACGAAGGTGTATGCTGAGAGGGTTTCGGCTTCACAAATGCCCTTATTGGGTTAGACCATCCATTACAATTTCTGATCATAATGGAATTCTTTTCACAACTAGAAAGCATCCCAAGACAAAGGATCTAATGCCAGAAGATTTCTGGATCAATGCATCAAAGAAAGGAATTTTAGTCTTTGCATTACCAGGGGAGCCAGGTCTGACAGAATTGGTTGGTGACTTCAAAATTCATTTTCATGATCGACAGGGAGATTTCTACTGTTGGATGAACACAACAATGATAGAGAACAGAAAAATTTTAGATGGCTCGGATCTTGATGATTTTGACAAGAGAAAGATCCCAGCTCCAGGGTTCCAGGTCGAAGTTGTGATGGTAGACTATGATGGCACCCTACCTGGAAAAGTCAACCCTGCAAGCAAAGGATCTGACATAAATAATGTCTCATCTGGTGCAAAGCCAACATCTAATTCAAGTAAGAGTAAGATACCTAAAAATGGAGATGATGATGTATTCTCAGAGAGCGATGAAGAGGAGACCAAGGGAACACAAAGGAGGGAAGCTGCAACTGATTACAAATATATGGAACCTCATCAAGCATCTGAGGCCACTACTGACCATGTAGGGATGTTGTCGCGCGCAACGGATCAGTTGTCACTCCAGCAGCATGACGAACGCACGGAAAACAATGTTTCTGAAGCATCAACTACAGATAAACTTCATAATATTCATGCAGGTCCTAACACCACCAACATGGAATCTATAGGGACAAGTGAATTCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCTTTTGGAGATGAAGATTTTGAGAGTGATTGA

Protein sequence

>Msa0756610

MEPAPPSSKTELYSAKVPAENDNARDSPSLSPVSSISSWARNLKFGAGDQNSQTENSGMSAFARLTSGIGLRSPSNELATSSSGAEQPNIIESFTKGLVDSSKEAVKAVQTKARHIVSQNKRRYQEGGFDLDMTYITENIIAMGFPGGDFSSGIFGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVASFPFSDHNCPPIQLIASFCRSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLYLKFFPTAEEAIDSFNQKRCVDGKALTLPSQIRYVKYFERTLTHFNGQVQPGRRCMLRGFRLHKCPYWVRPSITISDHNGILFTTRKHPKTKDLMPEDFWINASKKGILVFALPGEPGLTELVGDFKIHFHDRQGDFYCWMNTTMIENRKILDGSDLDDFDKRKIPAPGFQVEVVMVDYDGTLPGKVNPASKGSDINNVSSGAKPTSNSSKSKIPKNGDDDVFSESDEEETKGTQRREAATDYKYMEPHQASEATTDHVGMLSRATDQLSLQQHDERTENNVSEASTTDKLHNIHAGPNTTNMESIGTSEFKAIAADASVFSFGDEDFESD*