Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998740 | GAU33215.1 | 78.075 | 187 | 37 | 1 | 2 | 184 | 304 | 490 | 1.56e-96 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998740 | sp|Q9M9A8|APCB1_ARATH | 63.194 | 144 | 50 | 2 | 1 | 141 | 327 | 470 | 4.06e-54 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998740 | A0A2Z6NB51 | 78.075 | 187 | 37 | 1 | 2 | 184 | 304 | 490 | 7.47e-97 | 298 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0661650 | Msa0998740 | 0.804854 | 1.768660e-49 | -8.615850e-47 |
| Msa0386090 | Msa0998740 | 0.802615 | 5.158666e-49 | -8.615850e-47 |
| Msa0428080 | Msa0998740 | 0.803170 | 3.961868e-49 | -8.615850e-47 |
| Msa0455760 | Msa0998740 | 0.815845 | 7.502218e-52 | -8.615850e-47 |
| Msa0998740 | Msa1075650 | 0.811017 | 8.640645e-51 | -8.615850e-47 |
| Msa0998740 | Msa1147740 | 0.805609 | 1.229305e-49 | -8.615850e-47 |
| Msa0998740 | Msa1378040 | 0.816621 | 5.030791e-52 | -8.615850e-47 |
| Msa0998740 | Msa1392240 | 0.808282 | 3.342940e-50 | -8.615850e-47 |
| Msa0998740 | Msa1394380 | 0.822432 | 2.376243e-53 | -8.615850e-47 |
| Msa0998740 | Msa1408340 | 0.816524 | 5.288906e-52 | -8.615850e-47 |
| Msa0998740 | Msa1440560 | 0.816098 | 6.589625e-52 | -8.615850e-47 |
| Msa0240270 | Msa0998740 | 0.801430 | 9.039055e-49 | -8.615850e-47 |
| Msa0243480 | Msa0998740 | 0.815848 | 7.492451e-52 | -8.615850e-47 |
| Msa0269560 | Msa0998740 | 0.800715 | 1.265214e-48 | -8.615850e-47 |
| Msa0321080 | Msa0998740 | 0.819149 | 1.351426e-52 | -8.615850e-47 |
| Msa0898910 | Msa0998740 | 0.802571 | 5.267025e-49 | -8.615850e-47 |
| Msa0901400 | Msa0998740 | 0.807102 | 5.956167e-50 | -8.615850e-47 |
| Msa0936530 | Msa0998740 | 0.805463 | 1.319035e-49 | -8.615850e-47 |
| Msa0973600 | Msa0998740 | 0.805170 | 1.519035e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998740 | MtrunA17_Chr6g0484731 | 97.163 | 141 | 4 | 0 | 1 | 141 | 314 | 454 | 6.22e-93 | 281 |
| Msa0998740 | MtrunA17_Chr6g0484731 | 93.023 | 43 | 2 | 1 | 143 | 184 | 527 | 569 | 2.30e-19 | 84.7 |
| Msa0998740 | MtrunA17_Chr4g0010951 | 41.429 | 140 | 68 | 6 | 7 | 141 | 196 | 326 | 5.44e-20 | 86.3 |
| Msa0998740 | MtrunA17_Chr4g0010941 | 41.176 | 119 | 53 | 6 | 30 | 141 | 2 | 110 | 1.96e-17 | 77.0 |
| Msa0998740 | MtrunA17_Chr8g0384731 | 37.063 | 143 | 76 | 6 | 4 | 141 | 196 | 329 | 1.11e-16 | 77.0 |
| Msa0998740 | MtrunA17_Chr3g0130741 | 39.552 | 134 | 72 | 6 | 10 | 141 | 213 | 339 | 2.32e-16 | 75.9 |
| Msa0998740 | MtrunA17_Chr1g0159791 | 40.146 | 137 | 71 | 4 | 9 | 141 | 187 | 316 | 1.03e-13 | 68.2 |
| Msa0998740 | MtrunA17_Chr1g0179751 | 32.540 | 126 | 77 | 3 | 2 | 122 | 245 | 367 | 6.67e-12 | 63.2 |
| Msa0998740 | MtrunA17_Chr3g0078321 | 34.746 | 118 | 65 | 5 | 10 | 119 | 188 | 301 | 1.85e-11 | 61.6 |
| Msa0998740 | MtrunA17_Chr4g0027681 | 32.727 | 110 | 68 | 2 | 10 | 115 | 220 | 327 | 7.65e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0998740 | AT1G49050.2 | 63.194 | 144 | 50 | 2 | 1 | 141 | 154 | 297 | 4.22e-56 | 182 |
| Msa0998740 | AT1G49050.1 | 63.194 | 144 | 50 | 2 | 1 | 141 | 327 | 470 | 4.12e-55 | 183 |
| Msa0998740 | AT1G49050.3 | 60.800 | 125 | 46 | 2 | 1 | 122 | 327 | 451 | 1.17e-45 | 156 |
| Msa0998740 | AT1G44130.1 | 43.165 | 139 | 62 | 5 | 9 | 141 | 178 | 305 | 2.39e-23 | 95.9 |
| Msa0998740 | AT4G33490.1 | 37.748 | 151 | 85 | 4 | 10 | 157 | 185 | 329 | 2.14e-20 | 87.4 |
| Msa0998740 | AT4G33490.2 | 37.748 | 151 | 85 | 4 | 10 | 157 | 188 | 332 | 2.20e-20 | 87.8 |
| Msa0998740 | AT1G77480.2 | 40.260 | 154 | 79 | 6 | 9 | 157 | 196 | 341 | 6.86e-20 | 86.3 |
| Msa0998740 | AT1G77480.1 | 40.260 | 154 | 79 | 6 | 9 | 157 | 196 | 341 | 7.94e-20 | 86.3 |
| Msa0998740 | AT2G36670.1 | 36.364 | 110 | 64 | 2 | 10 | 115 | 246 | 353 | 1.41e-14 | 71.2 |
| Msa0998740 | AT2G36670.4 | 36.364 | 110 | 64 | 2 | 10 | 115 | 175 | 282 | 1.62e-14 | 71.2 |
| Msa0998740 | AT2G36670.3 | 36.364 | 110 | 64 | 2 | 10 | 115 | 175 | 282 | 1.62e-14 | 71.2 |
| Msa0998740 | AT2G36670.2 | 36.364 | 110 | 64 | 2 | 10 | 115 | 241 | 348 | 1.65e-14 | 71.2 |
| Msa0998740 | AT5G43100.2 | 37.879 | 132 | 71 | 6 | 8 | 132 | 194 | 321 | 8.80e-13 | 66.2 |
| Msa0998740 | AT5G43100.1 | 37.879 | 132 | 71 | 6 | 8 | 132 | 194 | 321 | 1.03e-12 | 65.9 |
| Msa0998740 | AT3G02740.1 | 35.088 | 114 | 65 | 4 | 7 | 115 | 220 | 329 | 7.76e-11 | 60.5 |
Find 41 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCAGCTTAAAGAAGTTTC+TGG | 0.214230 | 6_4:-80000688 | Msa0998740:intron |
| TTATACCAAACTGAGATTCT+TGG | 0.285575 | 6_4:-80000920 | Msa0998740:CDS |
| AAAATCCTACTTACGTAGTT+TGG | 0.299509 | 6_4:+80001368 | None:intergenic |
| CATTTCACTGCGAGGACATT+TGG | 0.309662 | 6_4:-79998695 | Msa0998740:CDS |
| ACCCAAGTCATACCCCAATA+AGG | 0.323305 | 6_4:+80001400 | None:intergenic |
| CTTAAAGAAGTTTCTGGGTT+GGG | 0.327554 | 6_4:-80000682 | Msa0998740:CDS |
| GGTGGTGGATACATGTTCTT+AGG | 0.378570 | 6_4:-80001436 | Msa0998740:CDS |
| CTTATCAGTTAGCAAGTAAA+GGG | 0.384205 | 6_4:-80001504 | Msa0998740:CDS |
| TCCCTTATTGGGGTATGACT+TGG | 0.394100 | 6_4:-80001402 | Msa0998740:CDS |
| AATGTTGTTGGTCATTGCTT+AGG | 0.406763 | 6_4:-80001472 | Msa0998740:CDS |
| GGGCTTATTAAGAATGTTGT+TGG | 0.412532 | 6_4:-80001484 | Msa0998740:CDS |
| CCTTTACTTGCTAACTGATA+AGG | 0.415422 | 6_4:+80001505 | None:intergenic |
| CCCTTATTGGGGTATGACTT+GGG | 0.427356 | 6_4:-80001401 | Msa0998740:CDS |
| TGCAGCTTAAAGAAGTTTCT+GGG | 0.429338 | 6_4:-80000687 | Msa0998740:intron |
| TTAAAGAAGTTTCTGGGTTG+GGG | 0.458580 | 6_4:-80000681 | Msa0998740:CDS |
| GACAATGTGAACAAGAATAT+TGG | 0.459509 | 6_4:-79998664 | Msa0998740:CDS |
| TTTGATGGAAACAGCAAAGT+AGG | 0.459859 | 6_4:-80000869 | Msa0998740:CDS |
| TTATTCCAAGAATCTCAGTT+TGG | 0.460107 | 6_4:+80000915 | None:intergenic |
| CTGATAAGGTAGGCCAACTT+TGG | 0.461547 | 6_4:+80001519 | None:intergenic |
| CCTTATCAGTTAGCAAGTAA+AGG | 0.465935 | 6_4:-80001505 | Msa0998740:CDS |
| GGGTATGACTTGGGTACCTA+TGG | 0.473246 | 6_4:-80001392 | Msa0998740:CDS |
| GGAAATGATGGAGTTGGTGG+TGG | 0.479851 | 6_4:-80001451 | Msa0998740:CDS |
| TCACAGAAGCAACGAGATCC+AGG | 0.495496 | 6_4:+80000792 | None:intergenic |
| CCCAAGTCATACCCCAATAA+GGG | 0.497768 | 6_4:+80001401 | None:intergenic |
| TGAGCCTTCAATATTCTGCT+TGG | 0.499739 | 6_4:+79998616 | None:intergenic |
| GCTTAAAGAAGTTTCTGGGT+TGG | 0.511973 | 6_4:-80000683 | Msa0998740:CDS |
| CATGCCAAGCAGAATATTGA+AGG | 0.517254 | 6_4:-79998620 | Msa0998740:CDS |
| AGATCCAGGTACGCTTCTCT+CGG | 0.520279 | 6_4:+80000806 | None:intergenic |
| TGTGAACAAGAATATTGGTT+GGG | 0.525910 | 6_4:-79998659 | Msa0998740:CDS |
| ACTTACGTAGTTTGGACCAT+AGG | 0.531182 | 6_4:+80001376 | None:intergenic |
| GGTCATTGCTTAGGAAATGA+TGG | 0.538019 | 6_4:-80001463 | Msa0998740:CDS |
| GAGATTCTTGGAATAAACTA+CGG | 0.544989 | 6_4:-80000908 | Msa0998740:CDS |
| TGCTTAGGAAATGATGGAGT+TGG | 0.560007 | 6_4:-80001457 | Msa0998740:CDS |
| TTAGGAAATGATGGAGTTGG+TGG | 0.594117 | 6_4:-80001454 | Msa0998740:CDS |
| GGACTGAGCAGAGCCAAAGT+TGG | 0.594894 | 6_4:-80001532 | Msa0998740:CDS |
| ACAAATTGGCAAAGTTGTGT+CGG | 0.602194 | 6_4:+80000642 | None:intergenic |
| TGGAAACAGCAAAGTAGGAA+AGG | 0.607216 | 6_4:-80000864 | Msa0998740:CDS |
| ATGTGAACAAGAATATTGGT+TGG | 0.608253 | 6_4:-79998660 | Msa0998740:CDS |
| GGTTGGGAGAGAACAAAATG+TGG | 0.685023 | 6_4:-79998643 | Msa0998740:CDS |
| TACTTGCTAACTGATAAGGT+AGG | 0.706815 | 6_4:+80001509 | None:intergenic |
| TTTGCAGACATTTCACTGCG+AGG | 0.713408 | 6_4:-79998703 | Msa0998740:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATCTATAAATTTTTCT+AGG | - | chr6_4:79999633-79999652 | Msa0998740:intron | 10.0% |
| !! | AAATATTTAGAAACATTTAA+TGG | - | chr6_4:80000508-80000527 | Msa0998740:intron | 10.0% |
| !!! | TTTTTTAAGCTAATAAAAAA+AGG | - | chr6_4:80001029-80001048 | Msa0998740:intron | 10.0% |
| !!! | TGTAATTTTTATTATATCAG+TGG | - | chr6_4:79998978-79998997 | Msa0998740:intron | 15.0% |
| !!! | GTCTGATTAATTTTTTTTTA+AGG | + | chr6_4:80000637-80000656 | None:intergenic | 15.0% |
| !! | TTAAATCAAAAAATTGTTAG+TGG | - | chr6_4:80000933-80000952 | Msa0998740:intron | 15.0% |
| !! | TTGAGAAATCTACAATATAA+CGG | - | chr6_4:79998871-79998890 | Msa0998740:intron | 20.0% |
| !! | AATAGTTTAAGAATCAATGT+TGG | + | chr6_4:79999058-79999077 | None:intergenic | 20.0% |
| !! | AATGAATTCATATTCAACAT+TGG | + | chr6_4:79999447-79999466 | None:intergenic | 20.0% |
| !! | AAAGTTGTATTAGAAAAAAG+AGG | + | chr6_4:79999952-79999971 | None:intergenic | 20.0% |
| !! | AGAACAAAAAAATTTGGAAA+TGG | + | chr6_4:79999982-80000001 | None:intergenic | 20.0% |
| !!! | TCCAAATTTTTTTGTTCTTA+AGG | - | chr6_4:79999984-80000003 | Msa0998740:intron | 20.0% |
| !! | ATATAGTCTCATTTCAAATA+GGG | + | chr6_4:80000702-80000721 | None:intergenic | 20.0% |
| !! | TATATAGTCTCATTTCAAAT+AGG | + | chr6_4:80000703-80000722 | None:intergenic | 20.0% |
| !! | TTTAAGCTAATAAAAAAAGG+CGG | - | chr6_4:80001032-80001051 | Msa0998740:intron | 20.0% |
| !!! | CTAAAGTAACTTCTGTTTTT+AGG | - | chr6_4:79998906-79998925 | Msa0998740:intron | 25.0% |
| ! | TCTGACAAAAATTATGCAAT+TGG | - | chr6_4:79999407-79999426 | Msa0998740:intron | 25.0% |
| ! | TTATCAAAACAGAGAAAAAC+TGG | - | chr6_4:79999779-79999798 | Msa0998740:intron | 25.0% |
| ! | GCCTTAAGAACAAAAAAATT+TGG | + | chr6_4:79999988-80000007 | None:intergenic | 25.0% |
| ! | AAAACTTGGATAAAACTAGA+AGG | + | chr6_4:80000133-80000152 | None:intergenic | 25.0% |
| ! | CATCATCAACATAAAAAACT+TGG | + | chr6_4:80000147-80000166 | None:intergenic | 25.0% |
| !!! | CAAGTTTTTTATGTTGATGA+TGG | - | chr6_4:80000145-80000164 | Msa0998740:intron | 25.0% |
| !!! | TATGCTTTATACCTCTTTTT+TGG | - | chr6_4:80000208-80000227 | Msa0998740:intron | 25.0% |
| ! | GTATAAAAGAATCAAGAGTT+AGG | + | chr6_4:80000417-80000436 | None:intergenic | 25.0% |
| !!! | CGGGTATATATTTTTTTGAA+TGG | - | chr6_4:80000458-80000477 | Msa0998740:intron | 25.0% |
| ! | GGATATTGGATATCAATTAA+TGG | - | chr6_4:80000902-80000921 | Msa0998740:CDS | 25.0% |
| ! | TTAAGCTAATAAAAAAAGGC+GGG | - | chr6_4:80001033-80001052 | Msa0998740:intron | 25.0% |
| ! | TCATTTAGTATTCTCTCTAT+AGG | + | chr6_4:80001252-80001271 | None:intergenic | 25.0% |
| ! | GAGAATACTAAATGAAAATG+TGG | - | chr6_4:80001257-80001276 | Msa0998740:intron | 25.0% |
| CTTATCAGTTAGCAAGTAAA+GGG | - | chr6_4:79998663-79998682 | Msa0998740:CDS | 30.0% | |
| ! | TGATGATTTTGTCCCTTATT+GGG | - | chr6_4:79998754-79998773 | Msa0998740:intron | 30.0% |
| AAAATCCTACTTACGTAGTT+TGG | + | chr6_4:79998802-79998821 | None:intergenic | 30.0% | |
| ATATCAGTGGAAATGAAAAC+AGG | - | chr6_4:79998991-79999010 | Msa0998740:intron | 30.0% | |
| GTATTCTCAAATTGGAGTTT+AGG | + | chr6_4:79999036-79999055 | None:intergenic | 30.0% | |
| CAATGTTGGTATTCTCAAAT+TGG | + | chr6_4:79999044-79999063 | None:intergenic | 30.0% | |
| !! | CTTGTTATTTGTTGTTTCTG+AGG | - | chr6_4:79999167-79999186 | Msa0998740:intron | 30.0% |
| TTATACCAAACTGAGATTCT+TGG | - | chr6_4:79999247-79999266 | Msa0998740:intron | 30.0% | |
| TTATTCCAAGAATCTCAGTT+TGG | + | chr6_4:79999255-79999274 | None:intergenic | 30.0% | |
| GAGATTCTTGGAATAAACTA+CGG | - | chr6_4:79999259-79999278 | Msa0998740:intron | 30.0% | |
| TCATATTCAACATTGGACTT+TGG | + | chr6_4:79999440-79999459 | None:intergenic | 30.0% | |
| !!! | GTATTTGGTTTTTGTAATGC+TGG | - | chr6_4:79999599-79999618 | Msa0998740:intron | 30.0% |
| CAGCATAGAAGTTTATTAGA+AGG | + | chr6_4:80000010-80000029 | None:intergenic | 30.0% | |
| ! | TGTTGATAAATAACTCAGCT+AGG | - | chr6_4:80000235-80000254 | Msa0998740:intron | 30.0% |
| TAAATAACTCAGCTAGGATT+AGG | - | chr6_4:80000241-80000260 | Msa0998740:intron | 30.0% | |
| ! | TTAGGTCATTAGTGTTATTG+AGG | - | chr6_4:80000259-80000278 | Msa0998740:intron | 30.0% |
| ATGTTGATATAATAACCGTG+TGG | - | chr6_4:80000835-80000854 | Msa0998740:CDS | 30.0% | |
| TGTTGATATAATAACCGTGT+GGG | - | chr6_4:80000836-80000855 | Msa0998740:CDS | 30.0% | |
| ACTATTAATATCTACCCACA+CGG | + | chr6_4:80000853-80000872 | None:intergenic | 30.0% | |
| ! | TAATAGTGGTTAGTCAGTTA+CGG | - | chr6_4:80000866-80000885 | Msa0998740:CDS | 30.0% |
| !! | GATAATGTGATAGTGGATAT+TGG | - | chr6_4:80000888-80000907 | Msa0998740:CDS | 30.0% |
| AAAAATTGTTAGTGGCTTAG+TGG | - | chr6_4:80000941-80000960 | Msa0998740:intron | 30.0% | |
| TAATAAAAAAAGGCGGGATT+AGG | - | chr6_4:80001039-80001058 | Msa0998740:intron | 30.0% | |
| AATAAAAAAAGGCGGGATTA+GGG | - | chr6_4:80001040-80001059 | Msa0998740:intron | 30.0% | |
| CTTGATGCTTTCTTATATTC+CGG | - | chr6_4:80001303-80001322 | Msa0998740:intron | 30.0% | |
| ATGTCGCAAATTAGAAACTA+AGG | + | chr6_4:80001366-80001385 | None:intergenic | 30.0% | |
| GACAATGTGAACAAGAATAT+TGG | - | chr6_4:80001503-80001522 | Msa0998740:CDS | 30.0% | |
| ATGTGAACAAGAATATTGGT+TGG | - | chr6_4:80001507-80001526 | Msa0998740:CDS | 30.0% | |
| ! | TGTGAACAAGAATATTGGTT+GGG | - | chr6_4:80001508-80001527 | Msa0998740:CDS | 30.0% |
| AACACATTGGCAAAAACAGA+TGG | - | chr6_4:79998605-79998624 | Msa0998740:CDS | 35.0% | |
| GCAAAAACAGATGGAATCAT+GGG | - | chr6_4:79998614-79998633 | Msa0998740:CDS | 35.0% | |
| ! | TACTTGCTAACTGATAAGGT+AGG | + | chr6_4:79998661-79998680 | None:intergenic | 35.0% |
| ! | CCTTTACTTGCTAACTGATA+AGG | + | chr6_4:79998665-79998684 | None:intergenic | 35.0% |
| CCTTATCAGTTAGCAAGTAA+AGG | - | chr6_4:79998662-79998681 | Msa0998740:CDS | 35.0% | |
| GGGCTTATTAAGAATGTTGT+TGG | - | chr6_4:79998683-79998702 | Msa0998740:CDS | 35.0% | |
| AATGTTGTTGGTCATTGCTT+AGG | - | chr6_4:79998695-79998714 | Msa0998740:CDS | 35.0% | |
| ! | GTGATGATTTTGTCCCTTAT+TGG | - | chr6_4:79998753-79998772 | Msa0998740:intron | 35.0% |
| ! | GATGATTTTGTCCCTTATTG+GGG | - | chr6_4:79998755-79998774 | Msa0998740:intron | 35.0% |
| !! | AATCGTCTTCTCAGTTTTGA+TGG | - | chr6_4:79999283-79999302 | Msa0998740:intron | 35.0% |
| TTTGATGGAAACAGCAAAGT+AGG | - | chr6_4:79999298-79999317 | Msa0998740:intron | 35.0% | |
| ! | GGAAAGGTGATTTTTGATAG+TGG | - | chr6_4:79999319-79999338 | Msa0998740:intron | 35.0% |
| ATGCAGCTTAAAGAAGTTTC+TGG | - | chr6_4:79999479-79999498 | Msa0998740:intron | 35.0% | |
| TGCAGCTTAAAGAAGTTTCT+GGG | - | chr6_4:79999480-79999499 | Msa0998740:intron | 35.0% | |
| ! | CTTAAAGAAGTTTCTGGGTT+GGG | - | chr6_4:79999485-79999504 | Msa0998740:intron | 35.0% |
| ! | TTAAAGAAGTTTCTGGGTTG+GGG | - | chr6_4:79999486-79999505 | Msa0998740:intron | 35.0% |
| ACAAATTGGCAAAGTTGTGT+CGG | + | chr6_4:79999528-79999547 | None:intergenic | 35.0% | |
| ACACAACTTTGCCAATTTGT+TGG | - | chr6_4:79999528-79999547 | Msa0998740:intron | 35.0% | |
| ! | AAATTAGCCTGCCAACAAAT+TGG | + | chr6_4:79999542-79999561 | None:intergenic | 35.0% |
| ! | AGCGATTTCTTTTACCTGAT+GGG | + | chr6_4:79999565-79999584 | None:intergenic | 35.0% |
| TGGAGGTGAAATTCAGTATT+TGG | - | chr6_4:79999584-79999603 | Msa0998740:intron | 35.0% | |
| AGATCTGCATGCATATAACA+CGG | + | chr6_4:79999813-79999832 | None:intergenic | 35.0% | |
| ! | AAGACATTAACGCTTCGTTT+TGG | - | chr6_4:79999857-79999876 | Msa0998740:intron | 35.0% |
| !!! | TTCGTTTTGGAAACAAATGG+TGG | - | chr6_4:79999870-79999889 | Msa0998740:intron | 35.0% |
| ! | GGATTTTGTCCACATTGTTT+CGG | - | chr6_4:79999891-79999910 | Msa0998740:intron | 35.0% |
| CATTAACATTGCTACCATCA+AGG | + | chr6_4:80000060-80000079 | None:intergenic | 35.0% | |
| GATGGTAGCAATGTTAATGA+TGG | - | chr6_4:80000061-80000080 | Msa0998740:intron | 35.0% | |
| TTTCCTCACTCCAAGTATAA+TGG | + | chr6_4:80000092-80000111 | None:intergenic | 35.0% | |
| ATCAACACACACCAAAAAAG+AGG | + | chr6_4:80000222-80000241 | None:intergenic | 35.0% | |
| GTCAAAAAGTCAGTATGCTT+AGG | - | chr6_4:80000783-80000802 | Msa0998740:intron | 35.0% | |
| AAGTCAGTATGCTTAGGTTA+TGG | - | chr6_4:80000789-80000808 | Msa0998740:intron | 35.0% | |
| GTGTGGGTAGATATTAATAG+TGG | - | chr6_4:80000852-80000871 | Msa0998740:CDS | 35.0% | |
| AGTTACGGATAATGTGATAG+TGG | - | chr6_4:80000881-80000900 | Msa0998740:CDS | 35.0% | |
| GCTTAGTGGTCAATAATGTT+GGG | - | chr6_4:80000955-80000974 | Msa0998740:intron | 35.0% | |
| GTCAAACCATACTTATCTTC+CGG | - | chr6_4:80001160-80001179 | Msa0998740:intron | 35.0% | |
| GGCAAAAACAGATGGAATCA+TGG | - | chr6_4:79998613-79998632 | Msa0998740:CDS | 40.0% | |
| GGTCATTGCTTAGGAAATGA+TGG | - | chr6_4:79998704-79998723 | Msa0998740:intron | 40.0% | |
| ! | TGCTTAGGAAATGATGGAGT+TGG | - | chr6_4:79998710-79998729 | Msa0998740:intron | 40.0% |
| ! | TTAGGAAATGATGGAGTTGG+TGG | - | chr6_4:79998713-79998732 | Msa0998740:intron | 40.0% |
| ACTTACGTAGTTTGGACCAT+AGG | + | chr6_4:79998794-79998813 | None:intergenic | 40.0% | |
| ATGGTCCAAACTACGTAAGT+AGG | - | chr6_4:79998794-79998813 | Msa0998740:intron | 40.0% | |
| GTGAATGCCAACATTCTGTT+TGG | - | chr6_4:79999140-79999159 | Msa0998740:intron | 40.0% | |
| AAGTGCTCCAAACAGAATGT+TGG | + | chr6_4:79999150-79999169 | None:intergenic | 40.0% | |
| TGGAAACAGCAAAGTAGGAA+AGG | - | chr6_4:79999303-79999322 | Msa0998740:intron | 40.0% | |
| ! | GCTTAAAGAAGTTTCTGGGT+TGG | - | chr6_4:79999484-79999503 | Msa0998740:intron | 40.0% |
| !! | AACTTTGCCAATTTGTTGGC+AGG | - | chr6_4:79999532-79999551 | Msa0998740:intron | 40.0% |
| ! | CAGCGATTTCTTTTACCTGA+TGG | + | chr6_4:79999566-79999585 | None:intergenic | 40.0% |
| CATCAGGTAAAAGAAATCGC+TGG | - | chr6_4:79999564-79999583 | Msa0998740:intron | 40.0% | |
| CAGATCTGTCAAAGATGTCA+AGG | - | chr6_4:79999826-79999845 | Msa0998740:intron | 40.0% | |
| !!! | CGCTTCGTTTTGGAAACAAA+TGG | - | chr6_4:79999867-79999886 | Msa0998740:intron | 40.0% |
| CTAATGATCAAGTAACCCTC+CGG | + | chr6_4:79999923-79999942 | None:intergenic | 40.0% | |
| AACTTCTATGCTGCAGAACA+AGG | - | chr6_4:80000017-80000036 | Msa0998740:intron | 40.0% | |
| ! | TGTTGCTTAGCTATCCTTGA+TGG | - | chr6_4:80000043-80000062 | Msa0998740:intron | 40.0% |
| GATGGATCCTCCATTATACT+TGG | - | chr6_4:80000079-80000098 | Msa0998740:intron | 40.0% | |
| CAGTATGCTTAGGTTATGGA+CGG | - | chr6_4:80000793-80000812 | Msa0998740:intron | 40.0% | |
| AGTATGCTTAGGTTATGGAC+GGG | - | chr6_4:80000794-80000813 | Msa0998740:intron | 40.0% | |
| GGCTTAGTGGTCAATAATGT+TGG | - | chr6_4:80000954-80000973 | Msa0998740:intron | 40.0% | |
| TAGTGGTCAATAATGTTGGG+AGG | - | chr6_4:80000958-80000977 | Msa0998740:intron | 40.0% | |
| ATAATGTTGGGAGGAGCTAT+TGG | - | chr6_4:80000967-80000986 | Msa0998740:intron | 40.0% | |
| CTTGGGTTCGATTCTCATAA+AGG | - | chr6_4:80000991-80001010 | Msa0998740:intron | 40.0% | |
| CATTCGGAGATAGCAAAAGT+TGG | + | chr6_4:80001121-80001140 | None:intergenic | 40.0% | |
| CGATTGTTCCAGTCAACATT+CGG | + | chr6_4:80001137-80001156 | None:intergenic | 40.0% | |
| ! | ATGTTGACTGGAACAATCGT+TGG | - | chr6_4:80001138-80001157 | Msa0998740:intron | 40.0% |
| GACTTAGACATCCTTTCCTT+CGG | + | chr6_4:80001216-80001235 | None:intergenic | 40.0% | |
| ! | AAGCTAATCTAGAGTTGAGC+CGG | + | chr6_4:80001325-80001344 | None:intergenic | 40.0% |
| CATGCCAAGCAGAATATTGA+AGG | - | chr6_4:80001547-80001566 | Msa0998740:CDS | 40.0% | |
| TGAGCCTTCAATATTCTGCT+TGG | + | chr6_4:80001554-80001573 | None:intergenic | 40.0% | |
| ! | GGGCATGCTTTTGAACACAT+TGG | - | chr6_4:79998592-79998611 | Msa0998740:CDS | 45.0% |
| CTGATAAGGTAGGCCAACTT+TGG | + | chr6_4:79998651-79998670 | None:intergenic | 45.0% | |
| !! | GGTGGTGGATACATGTTCTT+AGG | - | chr6_4:79998731-79998750 | Msa0998740:intron | 45.0% |
| TCCCTTATTGGGGTATGACT+TGG | - | chr6_4:79998765-79998784 | Msa0998740:intron | 45.0% | |
| CCCAAGTCATACCCCAATAA+GGG | + | chr6_4:79998769-79998788 | None:intergenic | 45.0% | |
| CCCTTATTGGGGTATGACTT+GGG | - | chr6_4:79998766-79998785 | Msa0998740:intron | 45.0% | |
| ACCCAAGTCATACCCCAATA+AGG | + | chr6_4:79998770-79998789 | None:intergenic | 45.0% | |
| CAGGTAAAAGAAATCGCTGG+AGG | - | chr6_4:79999567-79999586 | Msa0998740:intron | 45.0% | |
| CCTCACTCCAAGTATAATGG+AGG | + | chr6_4:80000089-80000108 | None:intergenic | 45.0% | |
| CCTCCATTATACTTGGAGTG+AGG | - | chr6_4:80000086-80000105 | Msa0998740:intron | 45.0% | |
| AACTATAACCGTGCGATGCA+CGG | - | chr6_4:80000438-80000457 | Msa0998740:intron | 45.0% | |
| ATATATACCCGTGCATCGCA+CGG | + | chr6_4:80000449-80000468 | None:intergenic | 45.0% | |
| GTATGCTTAGGTTATGGACG+GGG | - | chr6_4:80000795-80000814 | Msa0998740:intron | 45.0% | |
| TGCTATCTCCGAATGTTGAC+TGG | - | chr6_4:80001126-80001145 | Msa0998740:intron | 45.0% | |
| GTTGAGCCGGAAGATAAGTA+TGG | + | chr6_4:80001169-80001188 | None:intergenic | 45.0% | |
| ! | CTGCTAATCTAGAGTTGAGC+CGG | + | chr6_4:80001182-80001201 | None:intergenic | 45.0% |
| CATCCTTTCCTTCGGAAAAG+AGG | + | chr6_4:80001208-80001227 | None:intergenic | 45.0% | |
| TTTGCAGACATTTCACTGCG+AGG | - | chr6_4:80001464-80001483 | Msa0998740:CDS | 45.0% | |
| CATTTCACTGCGAGGACATT+TGG | - | chr6_4:80001472-80001491 | Msa0998740:CDS | 45.0% | |
| GGTTGGGAGAGAACAAAATG+TGG | - | chr6_4:80001524-80001543 | Msa0998740:CDS | 45.0% | |
| !!! | TTATTCTTTATTTTTTTTTA+TGG | + | chr6_4:80000596-80000615 | None:intergenic | 5.0% |
| !! | GGAAATGATGGAGTTGGTGG+TGG | - | chr6_4:79998716-79998735 | Msa0998740:intron | 50.0% |
| ! | GGGTATGACTTGGGTACCTA+TGG | - | chr6_4:79998775-79998794 | Msa0998740:intron | 50.0% |
| !! | TTTTCCGAGAGAAGCGTACC+TGG | - | chr6_4:79999357-79999376 | Msa0998740:intron | 50.0% |
| AGATCCAGGTACGCTTCTCT+CGG | + | chr6_4:79999364-79999383 | None:intergenic | 50.0% | |
| TCACAGAAGCAACGAGATCC+AGG | + | chr6_4:79999378-79999397 | None:intergenic | 50.0% | |
| TGGCAGGCTAATTTCCCATC+AGG | - | chr6_4:79999548-79999567 | Msa0998740:intron | 50.0% | |
| CACATTGTTTCGGATACCGC+CGG | - | chr6_4:79999901-79999920 | Msa0998740:intron | 50.0% | |
| ATGATCAAGTAACCCTCCGG+CGG | + | chr6_4:79999920-79999939 | None:intergenic | 50.0% | |
| ACTATAACCGTGCGATGCAC+GGG | - | chr6_4:80000439-80000458 | Msa0998740:intron | 50.0% | |
| AGGTTATGGACGGGGTTTAG+TGG | - | chr6_4:80000803-80000822 | Msa0998740:CDS | 50.0% | |
| ! | TTGGGAGGAGCTATTGGTCT+TGG | - | chr6_4:80000973-80000992 | Msa0998740:intron | 50.0% |
| !! | TGGGAGGAGCTATTGGTCTT+GGG | - | chr6_4:80000974-80000993 | Msa0998740:intron | 50.0% |
| AGGCGGGATTAGGGTTAATC+AGG | - | chr6_4:80001049-80001068 | Msa0998740:intron | 50.0% | |
| GGCGGGATTAGGGTTAATCA+GGG | - | chr6_4:80001050-80001069 | Msa0998740:intron | 50.0% | |
| CCTTTCCTTCGGAAAAGAGG+AGG | + | chr6_4:80001205-80001224 | None:intergenic | 50.0% | |
| ! | CCTCCTCTTTTCCGAAGGAA+AGG | - | chr6_4:80001202-80001221 | Msa0998740:intron | 50.0% |
| GGACTGAGCAGAGCCAAAGT+TGG | - | chr6_4:79998635-79998654 | Msa0998740:CDS | 55.0% | |
| CGGCGGTATCCGAAACAATG+TGG | + | chr6_4:79999903-79999922 | None:intergenic | 55.0% | |
| ATTGTTTCGGATACCGCCGG+AGG | - | chr6_4:79999904-79999923 | Msa0998740:intron | 55.0% | |
| TTGTTTCGGATACCGCCGGA+GGG | - | chr6_4:79999905-79999924 | Msa0998740:intron | 55.0% | |
| ! | AGCAGCCTCCTCTTTTCCGA+AGG | - | chr6_4:80001197-80001216 | Msa0998740:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 79998588 | 80001601 | 79998588 | ID=Msa0998740;Name=Msa0998740 |
| chr6_4 | mRNA | 79998588 | 80001601 | 79998588 | ID=Msa0998740-mRNA-1;Parent=Msa0998740;Name=Msa0998740-mRNA-1;_AED=0.25;_eAED=0.25;_QI=8|0.33|0.25|1|1|1|4|0|184 |
| chr6_4 | exon | 79998588 | 79998718 | 79998588 | ID=Msa0998740-mRNA-1:exon:15193;Parent=Msa0998740-mRNA-1 |
| chr6_4 | exon | 80000644 | 80000704 | 80000644 | ID=Msa0998740-mRNA-1:exon:15192;Parent=Msa0998740-mRNA-1 |
| chr6_4 | exon | 80000796 | 80000946 | 80000796 | ID=Msa0998740-mRNA-1:exon:15191;Parent=Msa0998740-mRNA-1 |
| chr6_4 | exon | 80001382 | 80001601 | 80001382 | ID=Msa0998740-mRNA-1:exon:15190;Parent=Msa0998740-mRNA-1 |
| chr6_4 | five_prime_UTR | 80001594 | 80001601 | 80001594 | ID=Msa0998740-mRNA-1:five_prime_utr;Parent=Msa0998740-mRNA-1 |
| chr6_4 | CDS | 80001382 | 80001593 | 80001382 | ID=Msa0998740-mRNA-1:cds;Parent=Msa0998740-mRNA-1 |
| chr6_4 | CDS | 80000796 | 80000946 | 80000796 | ID=Msa0998740-mRNA-1:cds;Parent=Msa0998740-mRNA-1 |
| chr6_4 | CDS | 80000644 | 80000704 | 80000644 | ID=Msa0998740-mRNA-1:cds;Parent=Msa0998740-mRNA-1 |
| chr6_4 | CDS | 79998588 | 79998718 | 79998588 | ID=Msa0998740-mRNA-1:cds;Parent=Msa0998740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
