AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0386090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386090 MtrunA17_Chr3g0144021 75.000 216 10 2 1 173 1 215 5.58e-111 315
Msa0386090 MtrunA17_Chr1g0212511 46.386 166 46 3 1 125 5 168 9.19e-37 127
Msa0386090 MtrunA17_Chr7g0222981 42.771 166 64 3 14 152 15 176 1.62e-33 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386090 AT1G20700.1 37.696 191 63 3 14 159 24 203 1.16e-36 126
Msa0386090 AT4G35550.1 39.732 224 65 4 18 171 35 258 3.95e-36 126
Msa0386090 AT1G20700.3 36.559 186 62 3 14 154 24 198 2.33e-33 117
Msa0386090 AT1G20710.1 35.751 193 71 5 14 161 8 192 1.05e-29 108
Msa0386090 AT1G20700.2 46.078 102 44 2 58 159 51 141 3.02e-25 95.5

Find 47 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAGACTAATGTTTATAAT+TGG 0.232522 3_1:+89841702 Msa0386090:CDS
TTGAACGAGCTCTTCTGTTC+TGG 0.269547 3_1:-89841727 None:intergenic
TGTTATAATACTATCTTATC+AGG 0.298547 3_1:+89842533 Msa0386090:three_prime_UTR
ATAGAATGTAATATCTTATC+AGG 0.334179 3_1:+89842574 Msa0386090:three_prime_UTR
TGATAAGATATTACATTCTA+TGG 0.339373 3_1:-89842572 None:intergenic
TACTTTCTTTGATAATTGAT+TGG 0.343505 3_1:+89842354 Msa0386090:exon
TATGTCTTTGATCTTCTGTT+TGG 0.364760 3_1:-89841648 None:intergenic
TTGGTTGATGACAGAATTCT+AGG 0.368659 3_1:+89842373 Msa0386090:three_prime_UTR
GCTATTACTGTGATTTGATC+AGG 0.372619 3_1:+89842504 Msa0386090:three_prime_UTR
GAGAAGAGTGGAGGAGGAGG+AGG 0.382972 3_1:+89839863 Msa0386090:CDS
CATGAGAAGAGTGGAGGAGG+AGG 0.390346 3_1:+89839860 Msa0386090:CDS
AAGAGTGGAGGAGGAGGAGG+AGG 0.394048 3_1:+89839866 Msa0386090:CDS
TCAACTTCTGTGTCTGCCTC+TGG 0.402663 3_1:-89841791 None:intergenic
TATATATGCCACTTCATTTG+TGG 0.403737 3_1:-89842436 None:intergenic
GTCTTTGATCTTCTGTTTGG+TGG 0.403902 3_1:-89841645 None:intergenic
GTTTAGACTAAGTATACATT+TGG 0.408425 3_1:+89842642 Msa0386090:three_prime_UTR
AATTCTAGGAGTGATCTATT+AGG 0.433239 3_1:+89842387 Msa0386090:three_prime_UTR
TGCAGGATTTGAGCACTTGT+TGG 0.434550 3_1:+89842299 Msa0386090:intron
CTCAACAAGCTGATCAGAAA+TGG 0.436221 3_1:-89839960 None:intergenic
TGAGAGTTTATCACCTCATC+GGG 0.446050 3_1:+89841865 Msa0386090:CDS
GCAGGATTTGAGCACTTGTT+GGG 0.456755 3_1:+89842300 Msa0386090:intron
TCTTTGATCTTCTGTTTGGT+GGG 0.460764 3_1:-89841644 None:intergenic
TTGAGAGTTTATCACCTCAT+CGG 0.471970 3_1:+89841864 Msa0386090:CDS
AGTTATGACCGATGAACAAA+TGG 0.474281 3_1:+89839904 Msa0386090:CDS
ACCGTGTTGCCCTAGTTCAA+TGG 0.479896 3_1:-89841672 None:intergenic
CAATCTTCATCAAAATCTTG+TGG 0.482629 3_1:+89842600 Msa0386090:three_prime_UTR
TAAAAGTTCCATTTGTTCAT+CGG 0.487682 3_1:-89839912 None:intergenic
AGGAAGAATGGCGGGATTAG+CGG 0.497878 3_1:+89839709 Msa0386090:five_prime_UTR
TTAAGATTAATACCTATGTC+AGG 0.524253 3_1:-89841911 None:intergenic
GAGCATGAGAAGAGTGGAGG+AGG 0.530069 3_1:+89839857 Msa0386090:CDS
AAGCAATCATCTGTTACTGC+AGG 0.542364 3_1:+89841755 Msa0386090:CDS
TTGATCAACCACAAATGAAG+TGG 0.564007 3_1:+89842428 Msa0386090:three_prime_UTR
ACCTGCGAGGTCGTGTTGAG+TGG 0.570461 3_1:-89839999 None:intergenic
AAAGACATAACCATTGAACT+AGG 0.570662 3_1:+89841662 Msa0386090:CDS
ACCACTCAACACGACCTCGC+AGG 0.579613 3_1:+89839998 Msa0386090:CDS
CCAATTATAAACATTAGTCT+CGG 0.584869 3_1:-89841702 None:intergenic
GAGGCAGAGCATGAGAAGAG+TGG 0.586564 3_1:+89839851 Msa0386090:CDS
TTTATCACCTCATCGGGTCA+AGG 0.591799 3_1:+89841871 Msa0386090:CDS
AAGACATAACCATTGAACTA+GGG 0.603476 3_1:+89841663 Msa0386090:CDS
TATTACATTCTATGGTAACA+TGG 0.618469 3_1:-89842564 None:intergenic
TACATATCCTTGACCCGATG+AGG 0.618531 3_1:-89841878 None:intergenic
AGGAAATCATGCAGAGCCAG+AGG 0.631315 3_1:+89841775 Msa0386090:CDS
ACCATTGAACTAGGGCAACA+CGG 0.634091 3_1:+89841671 Msa0386090:CDS
GCAGAGCATGAGAAGAGTGG+AGG 0.637395 3_1:+89839854 Msa0386090:CDS
TACATTCAGAGTCCTGACAT+AGG 0.642781 3_1:+89841899 Msa0386090:CDS
ATGGCGGGATTAGCGGAGAG+AGG 0.651628 3_1:+89839716 Msa0386090:five_prime_UTR
ATAGTAGTAGTTTACCTGCG+AGG 0.718032 3_1:-89840012 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATGAAAATAGTTTAA+CGG - chr3_1:89840890-89840909 None:intergenic 10.0%
!!! TTTAATTCTCTATTTTTTTA+AGG - chr3_1:89841337-89841356 None:intergenic 10.0%
!! CTGTAATATAACATTTATAT+AGG - chr3_1:89840264-89840283 None:intergenic 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr3_1:89840405-89840424 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr3_1:89840508-89840527 None:intergenic 15.0%
!! AAATTAACCTTATTAACTAT+TGG - chr3_1:89840532-89840551 None:intergenic 15.0%
!! AATAGTTAATAAGGTTAATT+TGG + chr3_1:89840531-89840550 Msa0386090:intron 15.0%
!!! AAAAAAATCATTTTTGTAAG+AGG + chr3_1:89840795-89840814 Msa0386090:intron 15.0%
!! ATCTATAAAAAAAACACTAA+AGG - chr3_1:89841260-89841279 None:intergenic 15.0%
!!! AAAACTAGTTTAATACAAAA+GGG - chr3_1:89841967-89841986 None:intergenic 15.0%
!!! AAAAACTAGTTTAATACAAA+AGG - chr3_1:89841968-89841987 None:intergenic 15.0%
!! TAAATTTATATGACATTAAG+TGG + chr3_1:89842268-89842287 Msa0386090:intron 15.0%
!! TATAAAGAAAAGAAAAAGAG+AGG + chr3_1:89839689-89839708 Msa0386090:five_prime_UTR 20.0%
!! ATATAGGCAAATTTGTATAA+GGG - chr3_1:89840248-89840267 None:intergenic 20.0%
!! TATATAGGCAAATTTGTATA+AGG - chr3_1:89840249-89840268 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr3_1:89840445-89840464 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr3_1:89840522-89840541 Msa0386090:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr3_1:89840565-89840584 None:intergenic 20.0%
!! TTCAAATAAGTTTATCCAAA+CGG + chr3_1:89841041-89841060 Msa0386090:intron 20.0%
!!! GAACAGAAAAATTGATTTTT+TGG - chr3_1:89841117-89841136 None:intergenic 20.0%
!!! AATAATGTACGATGATTTTT+CGG - chr3_1:89841202-89841221 None:intergenic 20.0%
!! AAAAACACTAAAGGTTTAAT+TGG - chr3_1:89841251-89841270 None:intergenic 20.0%
!!! TTTTTATAGGTGAATATTAG+TGG + chr3_1:89841369-89841388 Msa0386090:intron 20.0%
!! ATTCAATTGTAAACAACAAA+TGG - chr3_1:89842162-89842181 None:intergenic 20.0%
!!! TACTTTCTTTGATAATTGAT+TGG + chr3_1:89842354-89842373 Msa0386090:exon 20.0%
!! TGTTATAATACTATCTTATC+AGG + chr3_1:89842533-89842552 Msa0386090:three_prime_UTR 20.0%
!! TGATAAGATATTACATTCTA+TGG - chr3_1:89842575-89842594 None:intergenic 20.0%
!! ATAGAATGTAATATCTTATC+AGG + chr3_1:89842574-89842593 Msa0386090:three_prime_UTR 20.0%
! AAGAAAAAGAAGAAGAGAAA+TGG + chr3_1:89839829-89839848 Msa0386090:exon 25.0%
! TAAAAGTTCCATTTGTTCAT+CGG - chr3_1:89839915-89839934 None:intergenic 25.0%
!! AGAAAGAGAATACATGATTT+TGG + chr3_1:89840197-89840216 Msa0386090:intron 25.0%
! AGAACTCACAAAATTAAATG+TGG - chr3_1:89840754-89840773 None:intergenic 25.0%
! ACTAATGGAAACAACTTATT+TGG - chr3_1:89840980-89840999 None:intergenic 25.0%
!!! ACACTTTTTGGAATTACTAA+TGG - chr3_1:89840995-89841014 None:intergenic 25.0%
! TCAAATAAGTTTATCCAAAC+GGG + chr3_1:89841042-89841061 Msa0386090:intron 25.0%
!!! ACCTTGAGTGTTTTTTTTAT+AGG + chr3_1:89841356-89841375 Msa0386090:intron 25.0%
! ACCTATAAAAAAAACACTCA+AGG - chr3_1:89841360-89841379 None:intergenic 25.0%
!! CCAATTATAAACATTAGTCT+CGG - chr3_1:89841705-89841724 None:intergenic 25.0%
! TTAAGATTAATACCTATGTC+AGG - chr3_1:89841914-89841933 None:intergenic 25.0%
! GTTGTTTACAATTGAATGAT+TGG + chr3_1:89842165-89842184 Msa0386090:intron 25.0%
! AATTACTTAGCTATAAAACC+TGG + chr3_1:89842213-89842232 Msa0386090:intron 25.0%
! TATTACATTCTATGGTAACA+TGG - chr3_1:89842567-89842586 None:intergenic 25.0%
! GTTTAGACTAAGTATACATT+TGG + chr3_1:89842642-89842661 Msa0386090:three_prime_UTR 25.0%
AAAGAAAAAGAGAGGAAGAA+TGG + chr3_1:89839697-89839716 Msa0386090:five_prime_UTR 30.0%
TTTGGCAACAAGAAAAAGAA+AGG - chr3_1:89839770-89839789 None:intergenic 30.0%
TGTTGCCAAAAACAAAAGAT+AGG + chr3_1:89839780-89839799 Msa0386090:five_prime_UTR 30.0%
!!! CACTTCCTATCTTTTGTTTT+TGG - chr3_1:89839788-89839807 None:intergenic 30.0%
AAAAAGAAGAAGAGAAATGG+AGG + chr3_1:89839832-89839851 Msa0386090:exon 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr3_1:89840613-89840632 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr3_1:89840614-89840633 Msa0386090:intron 30.0%
!! AATTTCATTTTTGTTGTCCC+TGG + chr3_1:89840646-89840665 Msa0386090:intron 30.0%
GACATTGCATAATTTATGCA+GGG + chr3_1:89840696-89840715 Msa0386090:intron 30.0%
AAATTAAATGTGGAGAAGTG+AGG - chr3_1:89840744-89840763 None:intergenic 30.0%
! TAAACACTTGTGACACTTTT+TGG - chr3_1:89841007-89841026 None:intergenic 30.0%
!!! ATTGATTTTTTGGAATCGAG+AGG - chr3_1:89841107-89841126 None:intergenic 30.0%
GTCAATGTTATTGAATGTTC+AGG + chr3_1:89841482-89841501 Msa0386090:intron 30.0%
TATGTCTTTGATCTTCTGTT+TGG - chr3_1:89841651-89841670 None:intergenic 30.0%
AAAGACATAACCATTGAACT+AGG + chr3_1:89841662-89841681 Msa0386090:CDS 30.0%
AAGACATAACCATTGAACTA+GGG + chr3_1:89841663-89841682 Msa0386090:CDS 30.0%
CCGAGACTAATGTTTATAAT+TGG + chr3_1:89841702-89841721 Msa0386090:CDS 30.0%
!! TCACATGTTTTGTTCTCTTT+TGG - chr3_1:89841821-89841840 None:intergenic 30.0%
TCTATGAATACTCACTAACT+AGG + chr3_1:89841936-89841955 Msa0386090:intron 30.0%
TTAATGCCTAAAACGAAGTA+TGG - chr3_1:89842251-89842270 None:intergenic 30.0%
!! ATTAAGTGGTTTGTTTATGC+AGG + chr3_1:89842282-89842301 Msa0386090:intron 30.0%
! AATTCTAGGAGTGATCTATT+AGG + chr3_1:89842387-89842406 Msa0386090:three_prime_UTR 30.0%
! TTGTGGTTGATCAACATTTT+TGG - chr3_1:89842422-89842441 None:intergenic 30.0%
! TATATATGCCACTTCATTTG+TGG - chr3_1:89842439-89842458 None:intergenic 30.0%
CAATCTTCATCAAAATCTTG+TGG + chr3_1:89842600-89842619 Msa0386090:three_prime_UTR 30.0%
AGTTATGACCGATGAACAAA+TGG + chr3_1:89839904-89839923 Msa0386090:CDS 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr3_1:89840379-89840398 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr3_1:89840479-89840498 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr3_1:89840483-89840502 None:intergenic 35.0%
GGACATTGCATAATTTATGC+AGG + chr3_1:89840695-89840714 Msa0386090:intron 35.0%
CTTATTTCCATAAGCTCTCT+AGG - chr3_1:89840936-89840955 None:intergenic 35.0%
AGAGAGCTTATGGAAATAAG+CGG + chr3_1:89840936-89840955 Msa0386090:intron 35.0%
AGTGTCACAAGTGTTTATGT+CGG + chr3_1:89841010-89841029 Msa0386090:intron 35.0%
! AGTGAGTGCAGGATATATTT+TGG - chr3_1:89841069-89841088 None:intergenic 35.0%
CAATCAAGGTTTAAGTAGCT+CGG - chr3_1:89841451-89841470 None:intergenic 35.0%
! TCAAGTATTTGAAGCTGGAT+AGG - chr3_1:89841596-89841615 None:intergenic 35.0%
TCTTTGATCTTCTGTTTGGT+GGG - chr3_1:89841647-89841666 None:intergenic 35.0%
TTGAGAGTTTATCACCTCAT+CGG + chr3_1:89841864-89841883 Msa0386090:CDS 35.0%
CACATGAAGAAATTCGTGTA+AGG + chr3_1:89842004-89842023 Msa0386090:intron 35.0%
ATTGTCAATCGTATCGAACA+TGG - chr3_1:89842033-89842052 None:intergenic 35.0%
ACAATTCTCTGTGTTCAGTT+AGG + chr3_1:89842048-89842067 Msa0386090:intron 35.0%
CAATTCTCTGTGTTCAGTTA+GGG + chr3_1:89842049-89842068 Msa0386090:intron 35.0%
AATTCTCTGTGTTCAGTTAG+GGG + chr3_1:89842050-89842069 Msa0386090:intron 35.0%
GTATGGCTGTTTATTTAACC+AGG - chr3_1:89842234-89842253 None:intergenic 35.0%
! AAACAGCCATACTTCGTTTT+AGG + chr3_1:89842242-89842261 Msa0386090:intron 35.0%
TTGGGAAAAATTGAAGTTGC+AGG + chr3_1:89842318-89842337 Msa0386090:CDS 35.0%
!! TTGGTTGATGACAGAATTCT+AGG + chr3_1:89842373-89842392 Msa0386090:three_prime_UTR 35.0%
!! GGTTGATCAACATTTTTGGA+TGG - chr3_1:89842418-89842437 None:intergenic 35.0%
TTGATCAACCACAAATGAAG+TGG + chr3_1:89842428-89842447 Msa0386090:three_prime_UTR 35.0%
GCTATTACTGTGATTTGATC+AGG + chr3_1:89842504-89842523 Msa0386090:three_prime_UTR 35.0%
GAAAAAGAGAGGAAGAATGG+CGG + chr3_1:89839700-89839719 Msa0386090:five_prime_UTR 40.0%
AAAAAGAGAGGAAGAATGGC+GGG + chr3_1:89839701-89839720 Msa0386090:five_prime_UTR 40.0%
CTCAACAAGCTGATCAGAAA+TGG - chr3_1:89839963-89839982 None:intergenic 40.0%
ATAGTAGTAGTTTACCTGCG+AGG - chr3_1:89840015-89840034 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+TGG - chr3_1:89840618-89840637 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr3_1:89840480-89840499 None:intergenic 40.0%
TTGCATAATTTATGCAGGGC+TGG + chr3_1:89840700-89840719 Msa0386090:intron 40.0%
TGCATAATTTATGCAGGGCT+GGG + chr3_1:89840701-89840720 Msa0386090:intron 40.0%
!! TTTTGTGAGTTCTAGCCACT+AGG + chr3_1:89840761-89840780 Msa0386090:intron 40.0%
!!! TTTTTTTGTCCGTAGCCTAG+TGG - chr3_1:89840779-89840798 None:intergenic 40.0%
TAGCTATCCTAGAGAGCTTA+TGG + chr3_1:89840926-89840945 Msa0386090:intron 40.0%
!! GGATATATTTTGGACCCGTT+TGG - chr3_1:89841059-89841078 None:intergenic 40.0%
AAATTGGTTACAGTGAGTGC+AGG - chr3_1:89841080-89841099 None:intergenic 40.0%
GGAATCGAGAGGACAAAAAT+TGG - chr3_1:89841096-89841115 None:intergenic 40.0%
TTGAAACCTAGTACCTTCAG+TGG + chr3_1:89841410-89841429 Msa0386090:intron 40.0%
GACAAGCGCTAAATCAATCA+AGG - chr3_1:89841465-89841484 None:intergenic 40.0%
! TACGCTCAAGTATTTGAAGC+TGG - chr3_1:89841601-89841620 None:intergenic 40.0%
! CTTGAGCGTATTTTCGATGA+AGG + chr3_1:89841611-89841630 Msa0386090:intron 40.0%
! CGTATTTTCGATGAAGGCAA+TGG + chr3_1:89841617-89841636 Msa0386090:intron 40.0%
GTCTTTGATCTTCTGTTTGG+TGG - chr3_1:89841648-89841667 None:intergenic 40.0%
AAGCAATCATCTGTTACTGC+AGG + chr3_1:89841755-89841774 Msa0386090:CDS 40.0%
TGAGAGTTTATCACCTCATC+GGG + chr3_1:89841865-89841884 Msa0386090:CDS 40.0%
TACATTCAGAGTCCTGACAT+AGG + chr3_1:89841899-89841918 Msa0386090:CDS 40.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr3_1:89840617-89840636 Msa0386090:intron 45.0%
CAAGGTTTAAGTAGCTCGGT+TGG - chr3_1:89841447-89841466 None:intergenic 45.0%
GAATGTTCAGGACTGAGACT+TGG + chr3_1:89841494-89841513 Msa0386090:intron 45.0%
GTACTGTGATCCACTGATGA+TGG + chr3_1:89841523-89841542 Msa0386090:intron 45.0%
CTGGACACAAGATAACTTCC+AGG + chr3_1:89841552-89841571 Msa0386090:intron 45.0%
! ATTTGAAGCTGGATAGGCGT+TGG - chr3_1:89841590-89841609 None:intergenic 45.0%
ACCATTGAACTAGGGCAACA+CGG + chr3_1:89841671-89841690 Msa0386090:CDS 45.0%
TTGAACGAGCTCTTCTGTTC+TGG - chr3_1:89841730-89841749 None:intergenic 45.0%
TTTATCACCTCATCGGGTCA+AGG + chr3_1:89841871-89841890 Msa0386090:CDS 45.0%
TACATATCCTTGACCCGATG+AGG - chr3_1:89841881-89841900 None:intergenic 45.0%
TGCAGGATTTGAGCACTTGT+TGG + chr3_1:89842299-89842318 Msa0386090:intron 45.0%
GCAGGATTTGAGCACTTGTT+GGG + chr3_1:89842300-89842319 Msa0386090:intron 45.0%
! AGGAAGAATGGCGGGATTAG+CGG + chr3_1:89839709-89839728 Msa0386090:five_prime_UTR 50.0%
! ATGTGGAGAAGTGAGGTGTC+CGG - chr3_1:89840737-89840756 None:intergenic 50.0%
! GAGTTCTAGCCACTAGGCTA+CGG + chr3_1:89840767-89840786 Msa0386090:intron 50.0%
AGATAACTTCCAGGCAGCGT+TGG + chr3_1:89841561-89841580 Msa0386090:intron 50.0%
ACCGTGTTGCCCTAGTTCAA+TGG - chr3_1:89841675-89841694 None:intergenic 50.0%
AGGAAATCATGCAGAGCCAG+AGG + chr3_1:89841775-89841794 Msa0386090:CDS 50.0%
TCAACTTCTGTGTCTGCCTC+TGG - chr3_1:89841794-89841813 None:intergenic 50.0%
GAGGCAGAGCATGAGAAGAG+TGG + chr3_1:89839851-89839870 Msa0386090:CDS 55.0%
GCAGAGCATGAGAAGAGTGG+AGG + chr3_1:89839854-89839873 Msa0386090:CDS 55.0%
GAGCATGAGAAGAGTGGAGG+AGG + chr3_1:89839857-89839876 Msa0386090:CDS 55.0%
CATGAGAAGAGTGGAGGAGG+AGG + chr3_1:89839860-89839879 Msa0386090:CDS 55.0%
TCCCTGGAGCTTAGCACAGT+TGG + chr3_1:89840662-89840681 Msa0386090:intron 55.0%
GCCAACTGTGCTAAGCTCCA+GGG - chr3_1:89840666-89840685 None:intergenic 55.0%
CTGGAGCTTAGCACAGTTGG+CGG + chr3_1:89840665-89840684 Msa0386090:intron 55.0%
AGCTTAGCACAGTTGGCGGT+TGG + chr3_1:89840669-89840688 Msa0386090:intron 55.0%
! TGTGGAGAAGTGAGGTGTCC+GGG - chr3_1:89840736-89840755 None:intergenic 55.0%
!! CAAGGGCCACTGAAGGTACT+AGG - chr3_1:89841419-89841438 None:intergenic 55.0%
CTAGTACCTTCAGTGGCCCT+TGG + chr3_1:89841417-89841436 Msa0386090:intron 55.0%
!! TAGCTCGGTTGGTGAGCCAA+GGG - chr3_1:89841436-89841455 None:intergenic 55.0%
CCAGAGCAAGCCATCATCAG+TGG - chr3_1:89841536-89841555 None:intergenic 55.0%
!! CCACTGATGATGGCTTGCTC+TGG + chr3_1:89841533-89841552 Msa0386090:intron 55.0%
! ATGGCGGGATTAGCGGAGAG+AGG + chr3_1:89839716-89839735 Msa0386090:five_prime_UTR 60.0%
GAGAAGAGTGGAGGAGGAGG+AGG + chr3_1:89839863-89839882 Msa0386090:CDS 60.0%
AAGAGTGGAGGAGGAGGAGG+AGG + chr3_1:89839866-89839885 Msa0386090:CDS 60.0%
ACCACTCAACACGACCTCGC+AGG + chr3_1:89839998-89840017 Msa0386090:CDS 60.0%
ACCTGCGAGGTCGTGTTGAG+TGG - chr3_1:89840002-89840021 None:intergenic 60.0%
CGCCAACTGTGCTAAGCTCC+AGG - chr3_1:89840667-89840686 None:intergenic 60.0%
TAGCACAGTTGGCGGTTGGC+AGG + chr3_1:89840673-89840692 Msa0386090:intron 60.0%
AGCACAGTTGGCGGTTGGCA+GGG + chr3_1:89840674-89840693 Msa0386090:intron 60.0%
! TGGAGAAGTGAGGTGTCCGG+GGG - chr3_1:89840734-89840753 None:intergenic 60.0%
! GTGGAGAAGTGAGGTGTCCG+GGG - chr3_1:89840735-89840754 None:intergenic 60.0%
!! GTAGCTCGGTTGGTGAGCCA+AGG - chr3_1:89841437-89841456 None:intergenic 60.0%
AGGGCTGGGTTTCGAACCCC+CGG + chr3_1:89840715-89840734 Msa0386090:intron 65.0%
GGTGAGCCAAGGGCCACTGA+AGG - chr3_1:89841426-89841445 None:intergenic 65.0%
CGTTGGAGTCCAACGCTGCC+TGG - chr3_1:89841573-89841592 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 89839671 89842665 89839671 ID=Msa0386090;Name=Msa0386090
chr3_1 mRNA 89839671 89842665 89839671 ID=Msa0386090-mRNA-1;Parent=Msa0386090;Name=Msa0386090-mRNA-1;_AED=0.06;_eAED=0.06;_QI=177|0.5|0.66|1|1|1|3|300|173
chr3_1 exon 89839671 89840019 89839671 ID=Msa0386090-mRNA-1:exon:24614;Parent=Msa0386090-mRNA-1
chr3_1 exon 89841633 89841920 89841633 ID=Msa0386090-mRNA-1:exon:24615;Parent=Msa0386090-mRNA-1
chr3_1 exon 89842304 89842665 89842304 ID=Msa0386090-mRNA-1:exon:24616;Parent=Msa0386090-mRNA-1
chr3_1 five_prime_UTR 89839671 89839847 89839671 ID=Msa0386090-mRNA-1:five_prime_utr;Parent=Msa0386090-mRNA-1
chr3_1 CDS 89839848 89840019 89839848 ID=Msa0386090-mRNA-1:cds;Parent=Msa0386090-mRNA-1
chr3_1 CDS 89841633 89841920 89841633 ID=Msa0386090-mRNA-1:cds;Parent=Msa0386090-mRNA-1
chr3_1 CDS 89842304 89842365 89842304 ID=Msa0386090-mRNA-1:cds;Parent=Msa0386090-mRNA-1
chr3_1 three_prime_UTR 89842366 89842665 89842366 ID=Msa0386090-mRNA-1:three_prime_utr;Parent=Msa0386090-mRNA-1
Gene Sequence

>Msa0386090

ATGGAGGCAGAGCATGAGAAGAGTGGAGGAGGAGGAGGAGGACTTTATAGCGTGAAAGTTATGACCGATGAACAAATGGAACTTTTAAGACAACAGATATCTGTTTACATCACCATTTCTGATCAGCTTGTTGAGATGCATAAATCTGTTACCACTCAACACGACCTCGCAGGCAATGGCACTCCCACCAAACAGAAGATCAAAGACATAACCATTGAACTAGGGCAACACGGTCAAATATCCGAGACTAATGTTTATAATTGGTTCCAGAACAGAAGAGCTCGTTCAAAGCGCAAGCAATCATCTGTTACTGCAGGAAATCATGCAGAGCCAGAGGCAGACACAGAAGTTGAGTCTCCAAAAGAGAACAAAACATGTGAAGAAAGCGATCTAGTTCAGTTCTTTGAGAGTTTATCACCTCATCGGGTCAAGGATATGTACATTCAGAGTCCTGACATAGGATTTGAGCACTTGTTGGGAAAAATTGAAGTTGCAGGCTGCTATAATTCTTACTTTCTTTGA

Protein sequence

>Msa0386090

MEAEHEKSGGGGGGLYSVKVMTDEQMELLRQQISVYITISDQLVEMHKSVTTQHDLAGNGTPTKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQSSVTAGNHAEPEADTEVESPKENKTCEESDLVQFFESLSPHRVKDMYIQSPDIGFEHLLGKIEVAGCYNSYFL*