Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408340 | KEH21226.1 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 2.35e-79 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408340 | A0A072TVL9 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 1.12e-79 | 239 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001380 | Msa1408340 | 0.850828 | 1.318795e-60 | -8.615850e-47 |
| Msa0007990 | Msa1408340 | 0.815300 | 9.923455e-52 | -8.615850e-47 |
| Msa0026450 | Msa1408340 | 0.806825 | 6.813994e-50 | -8.615850e-47 |
| Msa0030160 | Msa1408340 | 0.806453 | 8.165242e-50 | -8.615850e-47 |
| Msa0032080 | Msa1408340 | 0.817040 | 4.052211e-52 | -8.615850e-47 |
| Msa0042550 | Msa1408340 | 0.806103 | 9.675066e-50 | -8.615850e-47 |
| Msa0044330 | Msa1408340 | 0.805332 | 1.405122e-49 | -8.615850e-47 |
| Msa0092410 | Msa1408340 | 0.852401 | 4.728771e-61 | -8.615850e-47 |
| Msa1353890 | Msa1408340 | 0.837074 | 6.440522e-57 | -8.615850e-47 |
| Msa1355890 | Msa1408340 | 0.837259 | 5.775226e-57 | -8.615850e-47 |
| Msa1365270 | Msa1408340 | 0.837984 | 3.764337e-57 | -8.615850e-47 |
| Msa1367530 | Msa1408340 | 0.811264 | 7.636782e-51 | -8.615850e-47 |
| Msa1372150 | Msa1408340 | 0.813178 | 2.918764e-51 | -8.615850e-47 |
| Msa1376450 | Msa1408340 | 0.832816 | 7.617489e-56 | -8.615850e-47 |
| Msa1378040 | Msa1408340 | 0.992106 | 2.439569e-191 | -8.615850e-47 |
| Msa1380220 | Msa1408340 | 0.809361 | 1.965599e-50 | -8.615850e-47 |
| Msa1383100 | Msa1408340 | 0.820960 | 5.204383e-53 | -8.615850e-47 |
| Msa1384280 | Msa1408340 | 0.809892 | 1.511708e-50 | -8.615850e-47 |
| Msa1385020 | Msa1408340 | 0.806478 | 8.067889e-50 | -8.615850e-47 |
| Msa1389260 | Msa1408340 | 0.805501 | 1.295003e-49 | -8.615850e-47 |
| Msa1394380 | Msa1408340 | 0.825434 | 4.697473e-54 | -8.615850e-47 |
| Msa1405220 | Msa1408340 | 0.811361 | 7.277130e-51 | -8.615850e-47 |
| Msa1408340 | Msa1420270 | 0.823797 | 1.141277e-53 | -8.615850e-47 |
| Msa1408340 | Msa1423820 | 0.825515 | 4.493746e-54 | -8.615850e-47 |
| Msa1408340 | Msa1424630 | 0.844354 | 7.962247e-59 | -8.615850e-47 |
| Msa1408340 | Msa1430130 | 0.815291 | 9.966608e-52 | -8.615850e-47 |
| Msa1408340 | Msa1430550 | 0.836082 | 1.152233e-56 | -8.615850e-47 |
| Msa1408340 | Msa1436600 | 0.820254 | 7.560607e-53 | -8.615850e-47 |
| Msa1408340 | Msa1457160 | 0.835408 | 1.707476e-56 | -8.615850e-47 |
| Msa1408340 | Msa1458510 | 0.822444 | 2.360998e-53 | -8.615850e-47 |
| Msa1408340 | Msa1460750 | 0.814477 | 1.510042e-51 | -8.615850e-47 |
| Msa1408340 | Msa1460800 | 0.822298 | 2.553229e-53 | -8.615850e-47 |
| Msa1408340 | Msa1462360 | 0.822846 | 1.904248e-53 | -8.615850e-47 |
| Msa0613340 | Msa1408340 | 0.822221 | 2.659601e-53 | -8.615850e-47 |
| Msa0614920 | Msa1408340 | 0.810845 | 9.410814e-51 | -8.615850e-47 |
| Msa0622170 | Msa1408340 | -0.807232 | 5.589433e-50 | -8.615850e-47 |
| Msa0626850 | Msa1408340 | 0.810426 | 1.159558e-50 | -8.615850e-47 |
| Msa0644400 | Msa1408340 | 0.803727 | 3.036850e-49 | -8.615850e-47 |
| Msa0648860 | Msa1408340 | 0.822379 | 2.444503e-53 | -8.615850e-47 |
| Msa0650300 | Msa1408340 | 0.814797 | 1.282757e-51 | -8.615850e-47 |
| Msa0661720 | Msa1408340 | 0.800751 | 1.244459e-48 | -8.615850e-47 |
| Msa0664970 | Msa1408340 | 0.803265 | 3.785043e-49 | -8.615850e-47 |
| Msa0667740 | Msa1408340 | 0.834128 | 3.584889e-56 | -8.615850e-47 |
| Msa0689780 | Msa1408340 | 0.819666 | 1.030115e-52 | -8.615850e-47 |
| Msa0695870 | Msa1408340 | 0.809765 | 1.609887e-50 | -8.615850e-47 |
| Msa0705990 | Msa1408340 | 0.800097 | 1.690922e-48 | -8.615850e-47 |
| Msa0708310 | Msa1408340 | 0.840528 | 8.234307e-58 | -8.615850e-47 |
| Msa0711150 | Msa1408340 | 0.815241 | 1.022642e-51 | -8.615850e-47 |
| Msa0715410 | Msa1408340 | 0.824919 | 6.217935e-54 | -8.615850e-47 |
| Msa0742150 | Msa1408340 | 0.812518 | 4.072384e-51 | -8.615850e-47 |
| Msa0766630 | Msa1408340 | 0.804776 | 1.836013e-49 | -8.615850e-47 |
| Msa0796690 | Msa1408340 | 0.812388 | 4.347044e-51 | -8.615850e-47 |
| Msa0801780 | Msa1408340 | 0.811841 | 5.722918e-51 | -8.615850e-47 |
| Msa0812950 | Msa1408340 | 0.801558 | 8.507869e-49 | -8.615850e-47 |
| Msa0817460 | Msa1408340 | 0.800355 | 1.498166e-48 | -8.615850e-47 |
| Msa0820850 | Msa1408340 | 0.804380 | 2.220944e-49 | -8.615850e-47 |
| Msa0825870 | Msa1408340 | 0.812802 | 3.528865e-51 | -8.615850e-47 |
| Msa0829830 | Msa1408340 | 0.807958 | 3.918710e-50 | -8.615850e-47 |
| Msa0830230 | Msa1408340 | 0.825504 | 4.520814e-54 | -8.615850e-47 |
| Msa0831850 | Msa1408340 | 0.820928 | 5.293857e-53 | -8.615850e-47 |
| Msa0136630 | Msa1408340 | 0.803174 | 3.954295e-49 | -8.615850e-47 |
| Msa0138020 | Msa1408340 | 0.830947 | 2.203460e-55 | -8.615850e-47 |
| Msa0149300 | Msa1408340 | 0.814944 | 1.190422e-51 | -8.615850e-47 |
| Msa0152560 | Msa1408340 | 0.802629 | 5.123845e-49 | -8.615850e-47 |
| Msa0172080 | Msa1408340 | 0.831174 | 1.938357e-55 | -8.615850e-47 |
| Msa0178510 | Msa1408340 | 0.816470 | 5.440072e-52 | -8.615850e-47 |
| Msa0186320 | Msa1408340 | 0.829221 | 5.812750e-55 | -8.615850e-47 |
| Msa0187830 | Msa1408340 | 0.838598 | 2.614452e-57 | -8.615850e-47 |
| Msa0190530 | Msa1408340 | 0.838786 | 2.338536e-57 | -8.615850e-47 |
| Msa0200850 | Msa1408340 | 0.844872 | 5.774923e-59 | -8.615850e-47 |
| Msa0201530 | Msa1408340 | 0.817383 | 3.393577e-52 | -8.615850e-47 |
| Msa0201570 | Msa1408340 | 0.838347 | 3.035005e-57 | -8.615850e-47 |
| Msa0202580 | Msa1408340 | 0.811159 | 8.048582e-51 | -8.615850e-47 |
| Msa0204840 | Msa1408340 | 0.802361 | 5.818423e-49 | -8.615850e-47 |
| Msa0217480 | Msa1408340 | 0.843410 | 1.425696e-58 | -8.615850e-47 |
| Msa0217700 | Msa1408340 | 0.808660 | 2.776195e-50 | -8.615850e-47 |
| Msa0218370 | Msa1408340 | 0.813016 | 3.168778e-51 | -8.615850e-47 |
| Msa0222980 | Msa1408340 | 0.800133 | 1.662873e-48 | -8.615850e-47 |
| Msa0229590 | Msa1408340 | 0.835885 | 1.293441e-56 | -8.615850e-47 |
| Msa0231060 | Msa1408340 | 0.803182 | 3.938624e-49 | -8.615850e-47 |
| Msa0232720 | Msa1408340 | 0.812991 | 3.208324e-51 | -8.615850e-47 |
| Msa1225100 | Msa1408340 | 0.819929 | 8.970875e-53 | -8.615850e-47 |
| Msa1235390 | Msa1408340 | 0.826861 | 2.150700e-54 | -8.615850e-47 |
| Msa1246700 | Msa1408340 | 0.842716 | 2.182027e-58 | -8.615850e-47 |
| Msa1252260 | Msa1408340 | 0.801109 | 1.051551e-48 | -8.615850e-47 |
| Msa1270730 | Msa1408340 | 0.827451 | 1.552880e-54 | -8.615850e-47 |
| Msa1276340 | Msa1408340 | 0.810772 | 9.759896e-51 | -8.615850e-47 |
| Msa1279480 | Msa1408340 | 0.802820 | 4.679201e-49 | -8.615850e-47 |
| Msa1297310 | Msa1408340 | 0.806029 | 1.003021e-49 | -8.615850e-47 |
| Msa1299560 | Msa1408340 | 0.804883 | 1.744619e-49 | -8.615850e-47 |
| Msa1299620 | Msa1408340 | 0.811773 | 5.920264e-51 | -8.615850e-47 |
| Msa1304890 | Msa1408340 | -0.807747 | 4.345173e-50 | -8.615850e-47 |
| Msa1310440 | Msa1408340 | 0.800227 | 1.591096e-48 | -8.615850e-47 |
| Msa1329870 | Msa1408340 | 0.819192 | 1.321395e-52 | -8.615850e-47 |
| Msa1332050 | Msa1408340 | 0.811014 | 8.651498e-51 | -8.615850e-47 |
| Msa1335230 | Msa1408340 | 0.825877 | 3.689218e-54 | -8.615850e-47 |
| Msa1338400 | Msa1408340 | 0.817346 | 3.458743e-52 | -8.615850e-47 |
| Msa1343250 | Msa1408340 | 0.822500 | 2.291874e-53 | -8.615850e-47 |
| Msa0365780 | Msa1408340 | 0.813411 | 2.594327e-51 | -8.615850e-47 |
| Msa0367870 | Msa1408340 | 0.809059 | 2.281550e-50 | -8.615850e-47 |
| Msa0371950 | Msa1408340 | 0.807865 | 4.102683e-50 | -8.615850e-47 |
| Msa0386010 | Msa1408340 | 0.835814 | 1.347903e-56 | -8.615850e-47 |
| Msa0394470 | Msa1408340 | 0.817147 | 3.833216e-52 | -8.615850e-47 |
| Msa0410580 | Msa1408340 | 0.830213 | 3.332328e-55 | -8.615850e-47 |
| Msa0417330 | Msa1408340 | 0.810582 | 1.072887e-50 | -8.615850e-47 |
| Msa0455760 | Msa1408340 | 0.831442 | 1.665797e-55 | -8.615850e-47 |
| Msa0479340 | Msa1408340 | 0.812437 | 4.241332e-51 | -8.615850e-47 |
| Msa0998740 | Msa1408340 | 0.816524 | 5.288906e-52 | -8.615850e-47 |
| Msa0999290 | Msa1408340 | 0.800845 | 1.190371e-48 | -8.615850e-47 |
| Msa0999680 | Msa1408340 | 0.804076 | 2.569920e-49 | -8.615850e-47 |
| Msa1007230 | Msa1408340 | 0.812987 | 3.215569e-51 | -8.615850e-47 |
| Msa1026940 | Msa1408340 | 0.830957 | 2.191186e-55 | -8.615850e-47 |
| Msa1039710 | Msa1408340 | -0.809315 | 2.010977e-50 | -8.615850e-47 |
| Msa1050680 | Msa1408340 | 0.813754 | 2.181050e-51 | -8.615850e-47 |
| Msa1063400 | Msa1408340 | 0.813852 | 2.074867e-51 | -8.615850e-47 |
| Msa1063420 | Msa1408340 | 0.807620 | 4.623850e-50 | -8.615850e-47 |
| Msa1075650 | Msa1408340 | 0.823442 | 1.382075e-53 | -8.615850e-47 |
| Msa1076960 | Msa1408340 | 0.817987 | 2.479990e-52 | -8.615850e-47 |
| Msa1077340 | Msa1408340 | 0.814036 | 1.890177e-51 | -8.615850e-47 |
| Msa1107190 | Msa1408340 | 0.807229 | 5.596367e-50 | -8.615850e-47 |
| Msa0240270 | Msa1408340 | 0.831304 | 1.800738e-55 | -8.615850e-47 |
| Msa0243480 | Msa1408340 | 0.852376 | 4.807084e-61 | -8.615850e-47 |
| Msa0244140 | Msa1408340 | 0.849505 | 3.098035e-60 | -8.615850e-47 |
| Msa0244190 | Msa1408340 | 0.840616 | 7.811167e-58 | -8.615850e-47 |
| Msa0257320 | Msa1408340 | 0.812255 | 4.647857e-51 | -8.615850e-47 |
| Msa0264830 | Msa1408340 | 0.806251 | 9.006415e-50 | -8.615850e-47 |
| Msa0269560 | Msa1408340 | 0.842588 | 2.359636e-58 | -8.615850e-47 |
| Msa0269810 | Msa1408340 | 0.812073 | 5.093611e-51 | -8.615850e-47 |
| Msa0271550 | Msa1408340 | 0.809302 | 2.023451e-50 | -8.615850e-47 |
| Msa0281930 | Msa1408340 | 0.839745 | 1.318626e-57 | -8.615850e-47 |
| Msa0282720 | Msa1408340 | 0.830011 | 3.733755e-55 | -8.615850e-47 |
| Msa0296620 | Msa1408340 | 0.801713 | 7.907095e-49 | -8.615850e-47 |
| Msa0299660 | Msa1408340 | 0.825483 | 4.574720e-54 | -8.615850e-47 |
| Msa0308460 | Msa1408340 | 0.806836 | 6.777236e-50 | -8.615850e-47 |
| Msa0321080 | Msa1408340 | 0.870266 | 1.660988e-66 | -8.615850e-47 |
| Msa0329680 | Msa1408340 | 0.844849 | 5.860740e-59 | -8.615850e-47 |
| Msa0340340 | Msa1408340 | 0.811138 | 8.133778e-51 | -8.615850e-47 |
| Msa0340710 | Msa1408340 | 0.800104 | 1.685735e-48 | -8.615850e-47 |
| Msa0357760 | Msa1408340 | 0.810580 | 1.073908e-50 | -8.615850e-47 |
| Msa0357790 | Msa1408340 | 0.809840 | 1.550890e-50 | -8.615850e-47 |
| Msa0357830 | Msa1408340 | 0.830826 | 2.360035e-55 | -8.615850e-47 |
| Msa0357840 | Msa1408340 | 0.826418 | 2.743133e-54 | -8.615850e-47 |
| Msa0357870 | Msa1408340 | 0.801452 | 8.945181e-49 | -8.615850e-47 |
| Msa0363790 | Msa1408340 | 0.834371 | 3.114862e-56 | -8.615850e-47 |
| Msa1107260 | Msa1408340 | 0.803274 | 3.769496e-49 | -8.615850e-47 |
| Msa1109090 | Msa1408340 | 0.810824 | 9.511453e-51 | -8.615850e-47 |
| Msa1111870 | Msa1408340 | 0.804811 | 1.805396e-49 | -8.615850e-47 |
| Msa1115280 | Msa1408340 | 0.808685 | 2.743086e-50 | -8.615850e-47 |
| Msa1122860 | Msa1408340 | 0.823564 | 1.294225e-53 | -8.615850e-47 |
| Msa1143020 | Msa1408340 | 0.800479 | 1.413939e-48 | -8.615850e-47 |
| Msa1147740 | Msa1408340 | 0.800288 | 1.546045e-48 | -8.615850e-47 |
| Msa1157080 | Msa1408340 | 0.833126 | 6.379625e-56 | -8.615850e-47 |
| Msa1162780 | Msa1408340 | 0.811387 | 7.181875e-51 | -8.615850e-47 |
| Msa1173490 | Msa1408340 | 0.823008 | 1.745207e-53 | -8.615850e-47 |
| Msa1177560 | Msa1408340 | 0.807783 | 4.270031e-50 | -8.615850e-47 |
| Msa1198770 | Msa1408340 | 0.826466 | 2.672036e-54 | -8.615850e-47 |
| Msa1200250 | Msa1408340 | 0.809433 | 1.897210e-50 | -8.615850e-47 |
| Msa1201200 | Msa1408340 | 0.801130 | 1.040938e-48 | -8.615850e-47 |
| Msa1207310 | Msa1408340 | 0.805783 | 1.129778e-49 | -8.615850e-47 |
| Msa1210110 | Msa1408340 | 0.816803 | 4.581296e-52 | -8.615850e-47 |
| Msa1218580 | Msa1408340 | 0.820466 | 6.758673e-53 | -8.615850e-47 |
| Msa0485490 | Msa1408340 | 0.810651 | 1.036564e-50 | -8.615850e-47 |
| Msa0486690 | Msa1408340 | 0.823856 | 1.105694e-53 | -8.615850e-47 |
| Msa0518380 | Msa1408340 | 0.802266 | 6.088128e-49 | -8.615850e-47 |
| Msa0524440 | Msa1408340 | 0.832117 | 1.135320e-55 | -8.615850e-47 |
| Msa0526070 | Msa1408340 | -0.814490 | 1.500320e-51 | -8.615850e-47 |
| Msa0535630 | Msa1408340 | 0.800734 | 1.254490e-48 | -8.615850e-47 |
| Msa0558370 | Msa1408340 | 0.812302 | 4.539768e-51 | -8.615850e-47 |
| Msa0559760 | Msa1408340 | 0.806142 | 9.495183e-50 | -8.615850e-47 |
| Msa0572680 | Msa1408340 | 0.877944 | 4.185071e-69 | -8.615850e-47 |
| Msa0573890 | Msa1408340 | 0.802106 | 6.564723e-49 | -8.615850e-47 |
| Msa0574600 | Msa1408340 | 0.833923 | 4.033890e-56 | -8.615850e-47 |
| Msa0587030 | Msa1408340 | 0.815402 | 9.418563e-52 | -8.615850e-47 |
| Msa0842650 | Msa1408340 | 0.806666 | 7.363651e-50 | -8.615850e-47 |
| Msa0861130 | Msa1408340 | 0.803084 | 4.126725e-49 | -8.615850e-47 |
| Msa0870060 | Msa1408340 | 0.821672 | 3.565005e-53 | -8.615850e-47 |
| Msa0880810 | Msa1408340 | 0.818788 | 1.632801e-52 | -8.615850e-47 |
| Msa0888260 | Msa1408340 | 0.821782 | 3.361729e-53 | -8.615850e-47 |
| Msa0894710 | Msa1408340 | 0.827440 | 1.563058e-54 | -8.615850e-47 |
| Msa0898320 | Msa1408340 | 0.824324 | 8.584422e-54 | -8.615850e-47 |
| Msa0901400 | Msa1408340 | 0.804831 | 1.788624e-49 | -8.615850e-47 |
| Msa0902830 | Msa1408340 | 0.831089 | 2.033856e-55 | -8.615850e-47 |
| Msa0915610 | Msa1408340 | 0.826452 | 2.692181e-54 | -8.615850e-47 |
| Msa0921420 | Msa1408340 | 0.805251 | 1.461243e-49 | -8.615850e-47 |
| Msa0927310 | Msa1408340 | 0.806716 | 7.186841e-50 | -8.615850e-47 |
| Msa0927380 | Msa1408340 | 0.805848 | 1.094881e-49 | -8.615850e-47 |
| Msa0932100 | Msa1408340 | 0.806499 | 7.987576e-50 | -8.615850e-47 |
| Msa0935770 | Msa1408340 | 0.846073 | 2.731522e-59 | -8.615850e-47 |
| Msa0936390 | Msa1408340 | 0.802227 | 6.199435e-49 | -8.615850e-47 |
| Msa0936530 | Msa1408340 | 0.803067 | 4.159709e-49 | -8.615850e-47 |
| Msa0939110 | Msa1408340 | 0.804982 | 1.662743e-49 | -8.615850e-47 |
| Msa0952040 | Msa1408340 | 0.805131 | 1.547721e-49 | -8.615850e-47 |
| Msa0960390 | Msa1408340 | 0.805393 | 1.364174e-49 | -8.615850e-47 |
| Msa0965080 | Msa1408340 | 0.809491 | 1.842907e-50 | -8.615850e-47 |
| Msa0965290 | Msa1408340 | 0.807650 | 4.557533e-50 | -8.615850e-47 |
| Msa0970230 | Msa1408340 | 0.804887 | 1.741191e-49 | -8.615850e-47 |
| Msa0972810 | Msa1408340 | 0.821865 | 3.216549e-53 | -8.615850e-47 |
| Msa0973600 | Msa1408340 | 0.829384 | 5.305072e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408340 | MtrunA17_Chr8g0388181 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 2.16e-83 | 239 |
| Msa1408340 | MtrunA17_Chr8g0388191 | 75.397 | 126 | 28 | 3 | 1 | 125 | 5 | 128 | 1.13e-59 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 18 sgRNAs with CRISPR-Local
Find 23 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCATGCAGTTTGCTTT+TGG | 0.234778 | tig0023380:+59462 | None:intergenic |
| GGACTCAGAACCAACCATTT+TGG | 0.266732 | tig0023380:-59417 | Msa1408340:CDS |
| CGTGAGTTACTTTCTATTCA+AGG | 0.359033 | tig0023380:-59230 | Msa1408340:CDS |
| TAGTAATGATTTAGTAGAAA+AGG | 0.375647 | tig0023380:-59348 | Msa1408340:CDS |
| AAAGAAAAGGGTCCGGTTTG+TGG | 0.426219 | tig0023380:-59438 | Msa1408340:CDS |
| CTGCATGCAAGACAAAGAAA+AGG | 0.503875 | tig0023380:-59451 | Msa1408340:CDS |
| TAATGATTTAGTAGAAAAGG+AGG | 0.512981 | tig0023380:-59345 | Msa1408340:CDS |
| GTGAGTTACTTTCTATTCAA+GGG | 0.520035 | tig0023380:-59229 | Msa1408340:CDS |
| TGGAAGTGTTCTTGAATTGA+AGG | 0.537857 | tig0023380:-59261 | Msa1408340:CDS |
| AATGATTTAGTAGAAAAGGA+GGG | 0.545782 | tig0023380:-59344 | Msa1408340:CDS |
| TGCATGCAAGACAAAGAAAA+GGG | 0.550595 | tig0023380:-59450 | Msa1408340:CDS |
| TTGGTTCTGAGTCCACAAAC+CGG | 0.560281 | tig0023380:+59426 | None:intergenic |
| GCAAGACAAAGAAAAGGGTC+CGG | 0.569438 | tig0023380:-59445 | Msa1408340:CDS |
| TTTGTACAAATGCTCCCTCA+CGG | 0.598040 | tig0023380:+59204 | None:intergenic |
| TCTATTCAAGGGAACCGTGA+GGG | 0.615406 | tig0023380:-59218 | Msa1408340:CDS |
| GAGTTGCTATCAAGATGCAA+TGG | 0.620407 | tig0023380:-59281 | Msa1408340:CDS |
| AGTGACGATTAGATTAACAA+AGG | 0.646753 | tig0023380:-59315 | Msa1408340:CDS |
| TTCTATTCAAGGGAACCGTG+AGG | 0.687443 | tig0023380:-59219 | Msa1408340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGTGATATTTTTTTA+AGG | + | tig0023380:59204-59223 | None:intergenic | 10.0% |
| !! | TAGTAATGATTTAGTAGAAA+AGG | - | tig0023380:59390-59409 | Msa1408340:CDS | 20.0% |
| ! | TAATGATTTAGTAGAAAAGG+AGG | - | tig0023380:59393-59412 | Msa1408340:CDS | 25.0% |
| ! | AATGATTTAGTAGAAAAGGA+GGG | - | tig0023380:59394-59413 | Msa1408340:CDS | 25.0% |
| AGTGACGATTAGATTAACAA+AGG | - | tig0023380:59423-59442 | Msa1408340:CDS | 30.0% | |
| ! | GTGAGTTACTTTCTATTCAA+GGG | - | tig0023380:59509-59528 | Msa1408340:CDS | 30.0% |
| TGCATGCAAGACAAAGAAAA+GGG | - | tig0023380:59288-59307 | Msa1408340:CDS | 35.0% | |
| ! | TTTTCTTCTCCCAAAATGGT+TGG | + | tig0023380:59334-59353 | None:intergenic | 35.0% |
| !! | GTTGTTTTCTTCTCCCAAAA+TGG | + | tig0023380:59338-59357 | None:intergenic | 35.0% |
| !! | TGGAAGTGTTCTTGAATTGA+AGG | - | tig0023380:59477-59496 | Msa1408340:CDS | 35.0% |
| ! | CGTGAGTTACTTTCTATTCA+AGG | - | tig0023380:59508-59527 | Msa1408340:CDS | 35.0% |
| !! | CTTGCATGCAGTTTGCTTTT+GGG | + | tig0023380:59278-59297 | None:intergenic | 40.0% |
| !! | TCTTGCATGCAGTTTGCTTT+TGG | + | tig0023380:59279-59298 | None:intergenic | 40.0% |
| CTGCATGCAAGACAAAGAAA+AGG | - | tig0023380:59287-59306 | Msa1408340:CDS | 40.0% | |
| ! | GACTCAGAACCAACCATTTT+GGG | - | tig0023380:59322-59341 | Msa1408340:CDS | 40.0% |
| GAGTTGCTATCAAGATGCAA+TGG | - | tig0023380:59457-59476 | Msa1408340:CDS | 40.0% | |
| TTTGTACAAATGCTCCCTCA+CGG | + | tig0023380:59537-59556 | None:intergenic | 40.0% | |
| GCAAGACAAAGAAAAGGGTC+CGG | - | tig0023380:59293-59312 | Msa1408340:CDS | 45.0% | |
| ! | AAAGAAAAGGGTCCGGTTTG+TGG | - | tig0023380:59300-59319 | Msa1408340:CDS | 45.0% |
| !! | TTGGTTCTGAGTCCACAAAC+CGG | + | tig0023380:59315-59334 | None:intergenic | 45.0% |
| ! | GGACTCAGAACCAACCATTT+TGG | - | tig0023380:59321-59340 | Msa1408340:CDS | 45.0% |
| TTCTATTCAAGGGAACCGTG+AGG | - | tig0023380:59519-59538 | Msa1408340:CDS | 45.0% | |
| TCTATTCAAGGGAACCGTGA+GGG | - | tig0023380:59520-59539 | Msa1408340:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023380 | gene | 59190 | 59570 | 59190 | ID=Msa1408340;Name=Msa1408340 |
| tig0023380 | mRNA | 59190 | 59570 | 59190 | ID=Msa1408340-mRNA-1;Parent=Msa1408340;Name=Msa1408340-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|126 |
| tig0023380 | exon | 59190 | 59570 | 59190 | ID=Msa1408340-mRNA-1:exon:25567;Parent=Msa1408340-mRNA-1 |
| tig0023380 | CDS | 59190 | 59570 | 59190 | ID=Msa1408340-mRNA-1:cds;Parent=Msa1408340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
