Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000050 | KEH27152.1 | 93.571 | 140 | 9 | 0 | 175 | 314 | 35 | 174 | 4.13e-87 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000050 | G8A0N2 | 93.571 | 140 | 9 | 0 | 175 | 314 | 35 | 174 | 1.97e-87 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107580 | Msa1000050 | 0.809371 | 1.955388e-50 | -8.615850e-47 |
| Msa0657970 | Msa1000050 | 0.824095 | 9.715998e-54 | -8.615850e-47 |
| Msa0766630 | Msa1000050 | 0.815004 | 1.154423e-51 | -8.615850e-47 |
| Msa0806090 | Msa1000050 | 0.802483 | 5.491875e-49 | -8.615850e-47 |
| Msa0380190 | Msa1000050 | 0.803842 | 2.873452e-49 | -8.615850e-47 |
| Msa0414230 | Msa1000050 | 0.811641 | 6.324434e-51 | -8.615850e-47 |
| Msa0432300 | Msa1000050 | 0.810184 | 1.307820e-50 | -8.615850e-47 |
| Msa1000050 | Msa1014540 | 0.803779 | 2.962183e-49 | -8.615850e-47 |
| Msa1000050 | Msa1024450 | 0.807446 | 5.036085e-50 | -8.615850e-47 |
| Msa1000050 | Msa1082500 | 0.805683 | 1.185875e-49 | -8.615850e-47 |
| Msa1000050 | Msa1136090 | 0.810079 | 1.377607e-50 | -8.615850e-47 |
| Msa1000050 | Msa1139000 | -0.801349 | 9.388578e-49 | -8.615850e-47 |
| Msa1000050 | Msa1160670 | 0.821650 | 3.606480e-53 | -8.615850e-47 |
| Msa1000050 | Msa1162550 | -0.803458 | 3.452729e-49 | -8.615850e-47 |
| Msa1000050 | Msa1283860 | 0.814185 | 1.752496e-51 | -8.615850e-47 |
| Msa1000050 | Msa1410620 | 0.811603 | 6.446471e-51 | -8.615850e-47 |
| Msa1000050 | Msa1410640 | 0.807801 | 4.232282e-50 | -8.615850e-47 |
| Msa0870530 | Msa1000050 | 0.806310 | 8.753956e-50 | -8.615850e-47 |
| Msa0885280 | Msa1000050 | 0.848107 | 7.566981e-60 | -8.615850e-47 |
| Msa0885290 | Msa1000050 | 0.815587 | 8.566711e-52 | -8.615850e-47 |
| Msa0935910 | Msa1000050 | 0.821591 | 3.721248e-53 | -8.615850e-47 |
| Msa0954910 | Msa1000050 | 0.806450 | 8.177399e-50 | -8.615850e-47 |
| Msa0959770 | Msa1000050 | 0.804601 | 1.997770e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000050 | MtrunA17_Chr6g0486141 | 93.571 | 140 | 9 | 0 | 175 | 314 | 52 | 191 | 4.58e-91 | 278 |
| Msa1000050 | MtrunA17_Chr6g0486181 | 42.857 | 252 | 64 | 5 | 1 | 174 | 1 | 250 | 1.62e-40 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGACGCGGATTCTTTA+AGG | 0.148470 | 6_4:-82775029 | Msa1000050:CDS |
| ATAACAAAGAAAATATATTT+TGG | 0.162580 | 6_4:-82774657 | Msa1000050:CDS |
| TTGTACAGTTAAACTGTTAA+AGG | 0.269164 | 6_4:-82772461 | Msa1000050:CDS |
| AATAGATATCGGTCTTTCTA+TGG | 0.272321 | 6_4:-82772518 | Msa1000050:CDS |
| AATACAACCATGGGAATTAA+AGG | 0.296030 | 6_4:+82772693 | None:intergenic |
| TTGTAACAACTTGAAATCTT+TGG | 0.305789 | 6_4:+82772734 | None:intergenic |
| GATATTAAGGACAAGAGTTT+AGG | 0.308639 | 6_4:-82775284 | Msa1000050:CDS |
| TCTTCCCCTCCACAACAATA+AGG | 0.309511 | 6_4:+82772629 | None:intergenic |
| ATTAAACAAGTTTCTAGAAC+AGG | 0.359156 | 6_4:-82774757 | Msa1000050:CDS |
| AAGTTTCTAGAACAGGGTTT+TGG | 0.363927 | 6_4:-82774750 | Msa1000050:CDS |
| AAAGGTCTCTTTGAATTTGA+AGG | 0.375217 | 6_4:+82772711 | None:intergenic |
| TTCTTTCATGGAGGAGGAAG+GGG | 0.389696 | 6_4:-82774995 | Msa1000050:intron |
| TATATCTGCTATCATTGAAA+TGG | 0.397917 | 6_4:+82775152 | None:intergenic |
| CCCATGGTTGTATTATGACT+TGG | 0.406476 | 6_4:-82772684 | Msa1000050:CDS |
| CTTGAAGACGATATATGTTT+CGG | 0.418280 | 6_4:-82772823 | Msa1000050:CDS |
| AAAGAATCCGCGTCTTTCAT+AGG | 0.429584 | 6_4:+82775033 | None:intergenic |
| CCATGGTTGTATTATGACTT+GGG | 0.434229 | 6_4:-82772683 | Msa1000050:CDS |
| GCGGCAGAAGGGTGTTGATC+AGG | 0.439352 | 6_4:+82772437 | None:intergenic |
| AAGTTTGTAGAAGTGGGAAT+TGG | 0.452404 | 6_4:-82772394 | Msa1000050:CDS |
| GTAGCTGAAGTGAAGAAAAT+CGG | 0.455738 | 6_4:+82772765 | None:intergenic |
| AGCTAAAGCTGAAAATGATC+TGG | 0.457923 | 6_4:-82775104 | Msa1000050:CDS |
| TTGAACAAGTTTGTAGAAGT+GGG | 0.471500 | 6_4:-82772400 | Msa1000050:CDS |
| TTTGAACAAGTTTGTAGAAG+TGG | 0.484530 | 6_4:-82772401 | Msa1000050:CDS |
| CGCAAGCCATCCATGTTTGT+TGG | 0.488032 | 6_4:+82772281 | None:intergenic |
| TTTCTTTCATGGAGGAGGAA+GGG | 0.488272 | 6_4:-82774996 | Msa1000050:CDS |
| ACTCAAAATAAAATAGATAT+CGG | 0.496840 | 6_4:-82772529 | Msa1000050:CDS |
| ATACGAAGCAATGTTGAAGA+AGG | 0.501068 | 6_4:+82774781 | None:intergenic |
| GATAGAGATGGTAGCACTCA+AGG | 0.505801 | 6_4:-82775184 | Msa1000050:CDS |
| GGGGAAGAAAAGAAGTAAAG+AGG | 0.508372 | 6_4:-82772614 | Msa1000050:CDS |
| ATGTAAAATAATGCGGCAGA+AGG | 0.510843 | 6_4:+82772425 | None:intergenic |
| AGTAATAGGAATATAAAACT+TGG | 0.512225 | 6_4:-82775338 | Msa1000050:CDS |
| AAAGAGACCTTTAATTCCCA+TGG | 0.516338 | 6_4:-82772700 | Msa1000050:CDS |
| GTGCCACAGTTGTTCTATAG+AGG | 0.517119 | 6_4:+82772584 | None:intergenic |
| ACTAGAGTATTTGATAGAGA+TGG | 0.527025 | 6_4:-82775196 | Msa1000050:intron |
| GACGATATATGTTTCGGTGG+TGG | 0.529071 | 6_4:-82772817 | Msa1000050:CDS |
| CAAAGGAGGCCTTATTGTTG+TGG | 0.531508 | 6_4:-82772638 | Msa1000050:CDS |
| CATGAGCATGATTCTGACAC+TGG | 0.533230 | 6_4:-82774709 | Msa1000050:CDS |
| CACTCTGCGATCGCAGCTCA+AGG | 0.550178 | 6_4:-82772353 | Msa1000050:CDS |
| GGAGGCCTTATTGTTGTGGA+GGG | 0.558440 | 6_4:-82772634 | Msa1000050:CDS |
| CACTATTATGCTATTAGTCA+AGG | 0.563685 | 6_4:-82772562 | Msa1000050:CDS |
| GGACAAGAGTTTAGGAAAGA+CGG | 0.564396 | 6_4:-82775276 | Msa1000050:CDS |
| CCAAGTCATAATACAACCAT+GGG | 0.567463 | 6_4:+82772684 | None:intergenic |
| TGTTATGGTAGGGCAGGCAA+AGG | 0.574742 | 6_4:-82772655 | Msa1000050:CDS |
| AGGAGGCCTTATTGTTGTGG+AGG | 0.575486 | 6_4:-82772635 | Msa1000050:CDS |
| AACAACTTGAAATCTTTGGT+CGG | 0.579113 | 6_4:+82772738 | None:intergenic |
| GAGAAATATGCTGATGAACA+TGG | 0.582922 | 6_4:-82772871 | Msa1000050:CDS |
| CCCAAGTCATAATACAACCA+TGG | 0.588774 | 6_4:+82772683 | None:intergenic |
| TTCAAACATGTAAAATAATG+CGG | 0.598545 | 6_4:+82772418 | None:intergenic |
| TATGGTAGGGCAGGCAAAGG+AGG | 0.605025 | 6_4:-82772652 | Msa1000050:CDS |
| TGTAAAATAATGCGGCAGAA+GGG | 0.613143 | 6_4:+82772426 | None:intergenic |
| TACGAAGCAATGTTGAAGAA+GGG | 0.616487 | 6_4:+82774782 | None:intergenic |
| TTAAACAAGTTTCTAGAACA+GGG | 0.624594 | 6_4:-82774756 | Msa1000050:CDS |
| ATGAGCATGATTCTGACACT+GGG | 0.630580 | 6_4:-82774708 | Msa1000050:CDS |
| CAACAAACATGGATGGCTTG+CGG | 0.636863 | 6_4:-82772280 | Msa1000050:CDS |
| GAAGACGATATATGTTTCGG+TGG | 0.653915 | 6_4:-82772820 | Msa1000050:CDS |
| GAGGCCTTATTGTTGTGGAG+GGG | 0.667931 | 6_4:-82772633 | Msa1000050:CDS |
| ATACCTCTATAGAACAACTG+TGG | 0.720723 | 6_4:-82772587 | Msa1000050:CDS |
| TGAACATGGCAAAATCAGCG+AGG | 0.781120 | 6_4:-82772857 | Msa1000050:CDS |
| AACGTGACCTATGAAAGACG+CGG | 0.825846 | 6_4:-82775040 | Msa1000050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATATGTTATTTGATA+TGG | + | chr6_4:82772771-82772790 | None:intergenic | 10.0% |
| !!! | ATAACAAAGAAAATATATTT+TGG | - | chr6_4:82772942-82772961 | Msa1000050:intron | 10.0% |
| !!! | TAACAAAGAAAATATATTTT+GGG | - | chr6_4:82772943-82772962 | Msa1000050:intron | 10.0% |
| !!! | ATAATTTTATATTCATGATA+GGG | + | chr6_4:82773040-82773059 | None:intergenic | 10.0% |
| !!! | TAATTTATTTAGTTTAACAA+CGG | + | chr6_4:82773586-82773605 | None:intergenic | 10.0% |
| !!! | AACAAAGAAAATATATTTTG+GGG | - | chr6_4:82772944-82772963 | Msa1000050:intron | 15.0% |
| !! | ATGAATATAAAATTATCGAT+GGG | - | chr6_4:82773005-82773024 | Msa1000050:intron | 15.0% |
| !!! | GATAATTTTATATTCATGAT+AGG | + | chr6_4:82773041-82773060 | None:intergenic | 15.0% |
| !! | ATGAATATAAAATTATCGAT+GGG | - | chr6_4:82773005-82773024 | Msa1000050:intron | 15.0% |
| !! | ACTATATTATCAACTAAATT+TGG | + | chr6_4:82773141-82773160 | None:intergenic | 15.0% |
| !! | TTTAATAACCAAATACATAA+TGG | - | chr6_4:82773520-82773539 | Msa1000050:intron | 15.0% |
| !!! | AAATTTCTTCTAATATTTTG+TGG | - | chr6_4:82773645-82773664 | Msa1000050:intron | 15.0% |
| !!! | AATTTCTTCTAATATTTTGT+GGG | - | chr6_4:82773646-82773665 | Msa1000050:intron | 15.0% |
| !!! | TTTATTGATCACTTTTATTA+GGG | + | chr6_4:82773743-82773762 | None:intergenic | 15.0% |
| !!! | ATTTATTGATCACTTTTATT+AGG | + | chr6_4:82773744-82773763 | None:intergenic | 15.0% |
| !! | TTCCAAATTATTAATTATAC+AGG | - | chr6_4:82774283-82774302 | Msa1000050:intron | 15.0% |
| !! | TTCCTGTATAATTAATAATT+TGG | + | chr6_4:82774288-82774307 | None:intergenic | 15.0% |
| !! | ACTCAAAATAAAATAGATAT+CGG | - | chr6_4:82775070-82775089 | Msa1000050:CDS | 15.0% |
| !! | AGTAATAGGAATATAAAACT+TGG | - | chr6_4:82772261-82772280 | Msa1000050:CDS | 20.0% |
| !! | ATTCCAAAAAAGAGATATTA+AGG | - | chr6_4:82772302-82772321 | Msa1000050:CDS | 20.0% |
| !!! | GAAACAATTTTTTTCTTTCA+TGG | - | chr6_4:82772592-82772611 | Msa1000050:CDS | 20.0% |
| !! | AGTGGAAATAAAATAGATAT+TGG | - | chr6_4:82772722-82772741 | Msa1000050:CDS | 20.0% |
| !! | TAACATATTATTTGTTTCAG+CGG | - | chr6_4:82772778-82772797 | Msa1000050:CDS | 20.0% |
| !! | CATGAATATAAAATTATCGA+TGG | - | chr6_4:82773004-82773023 | Msa1000050:intron | 20.0% |
| !! | CATGAATATAAAATTATCGA+TGG | - | chr6_4:82773004-82773023 | Msa1000050:intron | 20.0% |
| !!! | TTAGTTGATAATATAGTTAG+AGG | - | chr6_4:82773144-82773163 | Msa1000050:intron | 20.0% |
| !! | ATTCATATCCATTATGTATT+TGG | + | chr6_4:82773531-82773550 | None:intergenic | 20.0% |
| !!! | ATTCTCCCTTTTATATTTAA+GGG | + | chr6_4:82773621-82773640 | None:intergenic | 20.0% |
| !!! | GGTTTTGGTTTTAATAAAAA+TGG | - | chr6_4:82773684-82773703 | Msa1000050:intron | 20.0% |
| !! | AGTGATCAATAAATATGTAA+TGG | - | chr6_4:82773750-82773769 | Msa1000050:intron | 20.0% |
| !! | GTGATCAATAAATATGTAAT+GGG | - | chr6_4:82773751-82773770 | Msa1000050:intron | 20.0% |
| !! | TTAACACTGCTAAATAATTT+GGG | + | chr6_4:82774110-82774129 | None:intergenic | 20.0% |
| !!! | TTAATAATTTGGAATTGAGA+GGG | + | chr6_4:82774277-82774296 | None:intergenic | 20.0% |
| !!! | ATTAATAATTTGGAATTGAG+AGG | + | chr6_4:82774278-82774297 | None:intergenic | 20.0% |
| !!! | TAAAGTTTTGTACTTCATTT+GGG | + | chr6_4:82774342-82774361 | None:intergenic | 20.0% |
| !!! | TTAAAGTTTTGTACTTCATT+TGG | + | chr6_4:82774343-82774362 | None:intergenic | 20.0% |
| !! | CATTGAATATTTGATGTATT+TGG | - | chr6_4:82774491-82774510 | Msa1000050:intron | 20.0% |
| !!! | TAAGCAAAAAACAACTTTTT+AGG | + | chr6_4:82774554-82774573 | None:intergenic | 20.0% |
| !! | TTCAAACATGTAAAATAATG+CGG | + | chr6_4:82775184-82775203 | None:intergenic | 20.0% |
| !!! | AAATATTTTACCAACAAACA+TGG | - | chr6_4:82775308-82775327 | Msa1000050:CDS | 20.0% |
| !!! | GAAATAGTTTTGCTAGTAAT+AGG | - | chr6_4:82772247-82772266 | Msa1000050:CDS | 25.0% |
| !!! | ATCTCTTTTTTGGAATTTCA+TGG | + | chr6_4:82772298-82772317 | None:intergenic | 25.0% |
| !!! | TGTCCTTAATATCTCTTTTT+TGG | + | chr6_4:82772308-82772327 | None:intergenic | 25.0% |
| ! | TCTATCAAATACTCTAGTTA+AGG | + | chr6_4:82772401-82772420 | None:intergenic | 25.0% |
| ! | TATATCTGCTATCATTGAAA+TGG | + | chr6_4:82772450-82772469 | None:intergenic | 25.0% |
| !!! | ACAATTTTTTTCTTTCATGG+AGG | - | chr6_4:82772595-82772614 | Msa1000050:CDS | 25.0% |
| !! | CCACTAAAATCATTTTCATT+GGG | + | chr6_4:82772707-82772726 | None:intergenic | 25.0% |
| !! | TCCACTAAAATCATTTTCAT+TGG | + | chr6_4:82772708-82772727 | None:intergenic | 25.0% |
| ! | AATAGATATTGGACTTTCAA+TGG | - | chr6_4:82772733-82772752 | Msa1000050:CDS | 25.0% |
| !!! | ATTAAACAAGTTTCTAGAAC+AGG | - | chr6_4:82772842-82772861 | Msa1000050:CDS | 25.0% |
| !!! | TTAAACAAGTTTCTAGAACA+GGG | - | chr6_4:82772843-82772862 | Msa1000050:CDS | 25.0% |
| !! | TACATCGAATAAAGTACTTT+AGG | - | chr6_4:82773069-82773088 | Msa1000050:intron | 25.0% |
| ! | TGAATTAAGTTCATGTAAAG+TGG | + | chr6_4:82773103-82773122 | None:intergenic | 25.0% |
| ! | GACAAAAATATATGTACTCA+CGG | - | chr6_4:82773437-82773456 | Msa1000050:intron | 25.0% |
| ! | TATCCTCCCTTAAATATAAA+AGG | - | chr6_4:82773612-82773631 | Msa1000050:intron | 25.0% |
| ! | ATCCTCCCTTAAATATAAAA+GGG | - | chr6_4:82773613-82773632 | Msa1000050:intron | 25.0% |
| !! | CATTCTCCCTTTTATATTTA+AGG | + | chr6_4:82773622-82773641 | None:intergenic | 25.0% |
| !!! | ATAAATATGTAATGGGCTTT+TGG | - | chr6_4:82773758-82773777 | Msa1000050:intron | 25.0% |
| !!! | TAAATATGTAATGGGCTTTT+GGG | - | chr6_4:82773759-82773778 | Msa1000050:intron | 25.0% |
| ! | TTTGTGTAGAAAAATAGTGT+AGG | - | chr6_4:82773794-82773813 | Msa1000050:intron | 25.0% |
| ! | ATGATGAAATTGTTTACATG+TGG | - | chr6_4:82774047-82774066 | Msa1000050:intron | 25.0% |
| ! | GTTAACACTGCTAAATAATT+TGG | + | chr6_4:82774111-82774130 | None:intergenic | 25.0% |
| !! | AGAGACATATTAAAGGTATA+TGG | - | chr6_4:82774187-82774206 | Msa1000050:intron | 25.0% |
| ! | ACAGGAAAAGATTCTATATT+TGG | - | chr6_4:82774301-82774320 | Msa1000050:intron | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | + | chr6_4:82774564-82774583 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | - | chr6_4:82774564-82774583 | Msa1000050:intron | 25.0% |
| ! | TTGTAACAACTTGAAATCTT+TGG | + | chr6_4:82774868-82774887 | None:intergenic | 25.0% |
| ! | TTGTACAGTTAAACTGTTAA+AGG | - | chr6_4:82775138-82775157 | Msa1000050:CDS | 25.0% |
| GATATTAAGGACAAGAGTTT+AGG | - | chr6_4:82772315-82772334 | Msa1000050:CDS | 30.0% | |
| GAAGTGAAATACATCATTGA+CGG | - | chr6_4:82772359-82772378 | Msa1000050:CDS | 30.0% | |
| AAGTGAAATACATCATTGAC+GGG | - | chr6_4:82772360-82772379 | Msa1000050:CDS | 30.0% | |
| ! | ACTAGAGTATTTGATAGAGA+TGG | - | chr6_4:82772403-82772422 | Msa1000050:CDS | 30.0% |
| !!! | ATTTTTTTCTTTCATGGAGG+AGG | - | chr6_4:82772598-82772617 | Msa1000050:CDS | 30.0% |
| ! | CCCAATGAAAATGATTTTAG+TGG | - | chr6_4:82772704-82772723 | Msa1000050:CDS | 30.0% |
| ATATTATTTGTTTCAGCGGA+GGG | - | chr6_4:82772782-82772801 | Msa1000050:CDS | 30.0% | |
| AGAACAATATAGCTGTCATT+AGG | + | chr6_4:82773182-82773201 | None:intergenic | 30.0% | |
| AATTCATAATATGACCCCAA+TGG | - | chr6_4:82773371-82773390 | Msa1000050:intron | 30.0% | |
| !!! | TTGCAATCAATTGTTGGTTT+TGG | - | chr6_4:82773669-82773688 | Msa1000050:intron | 30.0% |
| TTGAACGGTTATAAATAGAG+AGG | - | chr6_4:82773853-82773872 | Msa1000050:intron | 30.0% | |
| CACTTACTTGAAATGATTAC+CGG | + | chr6_4:82773996-82774015 | None:intergenic | 30.0% | |
| ACACACAATACTACTAGAAA+GGG | + | chr6_4:82774377-82774396 | None:intergenic | 30.0% | |
| CTTGAAGACGATATATGTTT+CGG | - | chr6_4:82774776-82774795 | Msa1000050:CDS | 30.0% | |
| ! | GAACTCTTTTTATGCACAAT+TGG | + | chr6_4:82774811-82774830 | None:intergenic | 30.0% |
| AACAACTTGAAATCTTTGGT+CGG | + | chr6_4:82774864-82774883 | None:intergenic | 30.0% | |
| AAAGGTCTCTTTGAATTTGA+AGG | + | chr6_4:82774891-82774910 | None:intergenic | 30.0% | |
| AATACAACCATGGGAATTAA+AGG | + | chr6_4:82774909-82774928 | None:intergenic | 30.0% | |
| !!! | ATGACTTGGGTTTTTTGTTA+TGG | - | chr6_4:82774929-82774948 | Msa1000050:intron | 30.0% |
| !!! | TTGGGTTTTTTGTTATGGTA+GGG | - | chr6_4:82774934-82774953 | Msa1000050:intron | 30.0% |
| CACTATTATGCTATTAGTCA+AGG | - | chr6_4:82775037-82775056 | Msa1000050:CDS | 30.0% | |
| AATAGATATCGGTCTTTCTA+TGG | - | chr6_4:82775081-82775100 | Msa1000050:CDS | 30.0% | |
| TTTGAACAAGTTTGTAGAAG+TGG | - | chr6_4:82775198-82775217 | Msa1000050:intron | 30.0% | |
| TTGAACAAGTTTGTAGAAGT+GGG | - | chr6_4:82775199-82775218 | Msa1000050:intron | 30.0% | |
| ! | ATTTTACCAACAAACATGGA+TGG | - | chr6_4:82775312-82775331 | Msa1000050:CDS | 30.0% |
| AGCTAAAGCTGAAAATGATC+TGG | - | chr6_4:82772495-82772514 | Msa1000050:CDS | 35.0% | |
| GAATCCTTACAAAGTTACTG+TGG | - | chr6_4:82772664-82772683 | Msa1000050:CDS | 35.0% | |
| CATATTATTTGTTTCAGCGG+AGG | - | chr6_4:82772781-82772800 | Msa1000050:CDS | 35.0% | |
| TACGAAGCAATGTTGAAGAA+GGG | + | chr6_4:82772820-82772839 | None:intergenic | 35.0% | |
| ATACGAAGCAATGTTGAAGA+AGG | + | chr6_4:82772821-82772840 | None:intergenic | 35.0% | |
| !!! | AAGTTTCTAGAACAGGGTTT+TGG | - | chr6_4:82772849-82772868 | Msa1000050:CDS | 35.0% |
| TAGTCTCATTCAATGAGTCA+AGG | - | chr6_4:82773298-82773317 | Msa1000050:intron | 35.0% | |
| AGTTAGCAAATGCTTCCATT+GGG | + | chr6_4:82773389-82773408 | None:intergenic | 35.0% | |
| TAGTTAGCAAATGCTTCCAT+TGG | + | chr6_4:82773390-82773409 | None:intergenic | 35.0% | |
| !! | TGGAAGCATTTGCTAACTAT+AGG | - | chr6_4:82773391-82773410 | Msa1000050:intron | 35.0% |
| GTCATTAAAGCAACTTCAAC+AGG | + | chr6_4:82773420-82773439 | None:intergenic | 35.0% | |
| TTTAGTATCGTCTGTGTTTG+TGG | + | chr6_4:82773483-82773502 | None:intergenic | 35.0% | |
| ACAACGGATATAGATATCTG+CGG | + | chr6_4:82773570-82773589 | None:intergenic | 35.0% | |
| ! | CTCCCTTTTATATTTAAGGG+AGG | + | chr6_4:82773618-82773637 | None:intergenic | 35.0% |
| ATTTATAACCGTTCAACCCT+TGG | + | chr6_4:82773849-82773868 | None:intergenic | 35.0% | |
| TGACAATTTCTGCTCATTAG+TGG | - | chr6_4:82773899-82773918 | Msa1000050:intron | 35.0% | |
| TTTAGCAGTGTTAACTCCTT+TGG | - | chr6_4:82774116-82774135 | Msa1000050:intron | 35.0% | |
| ! | GATTTGGGTTTAGAAACCAA+AGG | + | chr6_4:82774135-82774154 | None:intergenic | 35.0% |
| GATCAGTAGCTCAATGATTT+GGG | + | chr6_4:82774150-82774169 | None:intergenic | 35.0% | |
| TGATCAGTAGCTCAATGATT+TGG | + | chr6_4:82774151-82774170 | None:intergenic | 35.0% | |
| CTTTAATATGTCTCTTCCTC+TGG | + | chr6_4:82774182-82774201 | None:intergenic | 35.0% | |
| CAGAGGAAGAGACATATTAA+AGG | - | chr6_4:82774180-82774199 | Msa1000050:intron | 35.0% | |
| CACACACAATACTACTAGAA+AGG | + | chr6_4:82774378-82774397 | None:intergenic | 35.0% | |
| TGTGAGTGTCTTAATCACAT+GGG | - | chr6_4:82774400-82774419 | Msa1000050:intron | 35.0% | |
| AAATAATGCTACCATCGACA+TGG | - | chr6_4:82774610-82774629 | Msa1000050:intron | 35.0% | |
| ! | ATCTTCTTTTACCATGTCGA+TGG | + | chr6_4:82774624-82774643 | None:intergenic | 35.0% |
| GAGAAATATGCTGATGAACA+TGG | - | chr6_4:82774728-82774747 | Msa1000050:CDS | 35.0% | |
| GTAGCTGAAGTGAAGAAAAT+CGG | + | chr6_4:82774837-82774856 | None:intergenic | 35.0% | |
| ! | TTTTCTTCACTTCAGCTACA+AGG | - | chr6_4:82774838-82774857 | Msa1000050:intron | 35.0% |
| AAAGAGACCTTTAATTCCCA+TGG | - | chr6_4:82774899-82774918 | Msa1000050:intron | 35.0% | |
| CCAAGTCATAATACAACCAT+GGG | + | chr6_4:82774918-82774937 | None:intergenic | 35.0% | |
| CCATGGTTGTATTATGACTT+GGG | - | chr6_4:82774916-82774935 | Msa1000050:intron | 35.0% | |
| !!! | CTTGGGTTTTTTGTTATGGT+AGG | - | chr6_4:82774933-82774952 | Msa1000050:intron | 35.0% |
| ATACCTCTATAGAACAACTG+TGG | - | chr6_4:82775012-82775031 | Msa1000050:CDS | 35.0% | |
| TGTAAAATAATGCGGCAGAA+GGG | + | chr6_4:82775176-82775195 | None:intergenic | 35.0% | |
| ATGTAAAATAATGCGGCAGA+AGG | + | chr6_4:82775177-82775196 | None:intergenic | 35.0% | |
| AAGTTTGTAGAAGTGGGAAT+TGG | - | chr6_4:82775205-82775224 | Msa1000050:intron | 35.0% | |
| ! | TTTTGCGTTTGTGGTTTTTG+AGG | + | chr6_4:82775346-82775365 | None:intergenic | 35.0% |
| ! | TTTGCATGATTTTGCGTTTG+TGG | + | chr6_4:82775355-82775374 | None:intergenic | 35.0% |
| GGACAAGAGTTTAGGAAAGA+CGG | - | chr6_4:82772323-82772342 | Msa1000050:CDS | 40.0% | |
| AAAGAATCCGCGTCTTTCAT+AGG | + | chr6_4:82772569-82772588 | None:intergenic | 40.0% | |
| TGAAAGACGCGGATTCTTTA+AGG | - | chr6_4:82772570-82772589 | Msa1000050:CDS | 40.0% | |
| ! | TTTTCTTTCATGGAGGAGGA+AGG | - | chr6_4:82772602-82772621 | Msa1000050:CDS | 40.0% |
| TTTCTTTCATGGAGGAGGAA+GGG | - | chr6_4:82772603-82772622 | Msa1000050:CDS | 40.0% | |
| TGTGCCACAGTAACTTTGTA+AGG | + | chr6_4:82772671-82772690 | None:intergenic | 40.0% | |
| !!! | TTCTAGAACAGGGTTTTGGA+AGG | - | chr6_4:82772853-82772872 | Msa1000050:CDS | 40.0% |
| !!! | TCTAGAACAGGGTTTTGGAA+GGG | - | chr6_4:82772854-82772873 | Msa1000050:CDS | 40.0% |
| ATGAGCATGATTCTGACACT+GGG | - | chr6_4:82772891-82772910 | Msa1000050:intron | 40.0% | |
| GTTAGCAAATGCTTCCATTG+GGG | + | chr6_4:82773388-82773407 | None:intergenic | 40.0% | |
| TATGTACTCACGGATATCGA+TGG | - | chr6_4:82773447-82773466 | Msa1000050:intron | 40.0% | |
| ! | TGTGGGTTGCAATCAATTGT+TGG | - | chr6_4:82773663-82773682 | Msa1000050:intron | 40.0% |
| AGGGTCTAAGCATCATCAAA+TGG | + | chr6_4:82773724-82773743 | None:intergenic | 40.0% | |
| CCATCATGGGCATATTGTTT+GGG | + | chr6_4:82773820-82773839 | None:intergenic | 40.0% | |
| CCAAACAATATGCCCATGAT+GGG | - | chr6_4:82773818-82773837 | Msa1000050:intron | 40.0% | |
| CGGTTATAAATAGAGAGGCT+AGG | - | chr6_4:82773858-82773877 | Msa1000050:intron | 40.0% | |
| ATTGTCAGAGTGATGGCAAA+GGG | + | chr6_4:82773886-82773905 | None:intergenic | 40.0% | |
| AATTGTCAGAGTGATGGCAA+AGG | + | chr6_4:82773887-82773906 | None:intergenic | 40.0% | |
| AGCAGAAATTGTCAGAGTGA+TGG | + | chr6_4:82773893-82773912 | None:intergenic | 40.0% | |
| TTTCACATGCTCCGAACTTA+GGG | + | chr6_4:82773941-82773960 | None:intergenic | 40.0% | |
| AAGGAAGGCTTCTCAAATCT+CGG | - | chr6_4:82773965-82773984 | Msa1000050:intron | 40.0% | |
| ATTGAGCTACTGATCATTCG+TGG | - | chr6_4:82774155-82774174 | Msa1000050:intron | 40.0% | |
| GTGTGAGTGTCTTAATCACA+TGG | - | chr6_4:82774399-82774418 | Msa1000050:intron | 40.0% | |
| AATCACATGGGAAACAGTCT+TGG | - | chr6_4:82774412-82774431 | Msa1000050:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | + | chr6_4:82774568-82774587 | None:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | + | chr6_4:82774567-82774586 | None:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | - | chr6_4:82774567-82774586 | Msa1000050:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | - | chr6_4:82774568-82774587 | Msa1000050:intron | 40.0% | |
| GTGTTACATTATACTCCCTC+CGG | + | chr6_4:82774586-82774605 | None:intergenic | 40.0% | |
| GTTCATCAGCATATTTCTCG+AGG | + | chr6_4:82774727-82774746 | None:intergenic | 40.0% | |
| GAAGACGATATATGTTTCGG+TGG | - | chr6_4:82774779-82774798 | Msa1000050:CDS | 40.0% | |
| CCCATGGTTGTATTATGACT+TGG | - | chr6_4:82774915-82774934 | Msa1000050:intron | 40.0% | |
| CCCAAGTCATAATACAACCA+TGG | + | chr6_4:82774919-82774938 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGTTATGGTAGGGC+AGG | - | chr6_4:82774938-82774957 | Msa1000050:intron | 40.0% |
| GGGGAAGAAAAGAAGTAAAG+AGG | - | chr6_4:82774985-82775004 | Msa1000050:intron | 40.0% | |
| GATAGAGATGGTAGCACTCA+AGG | - | chr6_4:82772415-82772434 | Msa1000050:CDS | 45.0% | |
| AACGTGACCTATGAAAGACG+CGG | - | chr6_4:82772559-82772578 | Msa1000050:CDS | 45.0% | |
| TTCTTTCATGGAGGAGGAAG+GGG | - | chr6_4:82772604-82772623 | Msa1000050:CDS | 45.0% | |
| GAACAGAATAGCATGCAGAG+AGG | - | chr6_4:82772638-82772657 | Msa1000050:CDS | 45.0% | |
| CATGAGCATGATTCTGACAC+TGG | - | chr6_4:82772890-82772909 | Msa1000050:intron | 45.0% | |
| CCCAAACAATATGCCCATGA+TGG | - | chr6_4:82773817-82773836 | Msa1000050:intron | 45.0% | |
| CCCATCATGGGCATATTGTT+TGG | + | chr6_4:82773821-82773840 | None:intergenic | 45.0% | |
| ! | AACAATATGCCCATGATGGG+TGG | - | chr6_4:82773821-82773840 | Msa1000050:intron | 45.0% |
| TTGTCAGAGTGATGGCAAAG+GGG | + | chr6_4:82773885-82773904 | None:intergenic | 45.0% | |
| CTTTCACATGCTCCGAACTT+AGG | + | chr6_4:82773942-82773961 | None:intergenic | 45.0% | |
| CTAAGTTCGGAGCATGTGAA+AGG | - | chr6_4:82773940-82773959 | Msa1000050:intron | 45.0% | |
| AGCATGTGAAAGGCAAAGGA+AGG | - | chr6_4:82773950-82773969 | Msa1000050:intron | 45.0% | |
| TTCTCAAATCTCGGCGAATC+CGG | - | chr6_4:82773974-82773993 | Msa1000050:intron | 45.0% | |
| GATGCTGGAGGATACAACAA+GGG | - | chr6_4:82774656-82774675 | Msa1000050:CDS | 45.0% | |
| ! | ATGGACTACGTCATACACCA+CGG | - | chr6_4:82774679-82774698 | Msa1000050:CDS | 45.0% |
| ! | TGTACAAGTTGAATCACCCG+TGG | + | chr6_4:82774699-82774718 | None:intergenic | 45.0% |
| TGAACATGGCAAAATCAGCG+AGG | - | chr6_4:82774742-82774761 | Msa1000050:CDS | 45.0% | |
| GACGATATATGTTTCGGTGG+TGG | - | chr6_4:82774782-82774801 | Msa1000050:CDS | 45.0% | |
| !! | CAAAGGAGGCCTTATTGTTG+TGG | - | chr6_4:82774961-82774980 | Msa1000050:intron | 45.0% |
| TCTTCCCCTCCACAACAATA+AGG | + | chr6_4:82774973-82774992 | None:intergenic | 45.0% | |
| GTGCCACAGTTGTTCTATAG+AGG | + | chr6_4:82775018-82775037 | None:intergenic | 45.0% | |
| CAACAAACATGGATGGCTTG+CGG | - | chr6_4:82775319-82775338 | Msa1000050:CDS | 45.0% | |
| CGAACTTAGGGCTTTCGATG+GGG | + | chr6_4:82773929-82773948 | None:intergenic | 50.0% | |
| CCGAACTTAGGGCTTTCGAT+GGG | + | chr6_4:82773930-82773949 | None:intergenic | 50.0% | |
| CCCATCGAAAGCCCTAAGTT+CGG | - | chr6_4:82773927-82773946 | Msa1000050:intron | 50.0% | |
| TCCGAACTTAGGGCTTTCGA+TGG | + | chr6_4:82773931-82773950 | None:intergenic | 50.0% | |
| TCGGAGCATGTGAAAGGCAA+AGG | - | chr6_4:82773946-82773965 | Msa1000050:intron | 50.0% | |
| ACTGATCATTCGTGGACCAG+AGG | - | chr6_4:82774163-82774182 | Msa1000050:intron | 50.0% | |
| CACATGGGAAACAGTCTTGG+TGG | - | chr6_4:82774415-82774434 | Msa1000050:intron | 50.0% | |
| GATGATGAGAGTGACGATGC+TGG | - | chr6_4:82774641-82774660 | Msa1000050:CDS | 50.0% | |
| CGATGCTGGAGGATACAACA+AGG | - | chr6_4:82774655-82774674 | Msa1000050:CDS | 50.0% | |
| CTGGAGGATACAACAAGGGA+TGG | - | chr6_4:82774660-82774679 | Msa1000050:CDS | 50.0% | |
| TGGACTACGTCATACACCAC+GGG | - | chr6_4:82774680-82774699 | Msa1000050:CDS | 50.0% | |
| TGTTATGGTAGGGCAGGCAA+AGG | - | chr6_4:82774944-82774963 | Msa1000050:intron | 50.0% | |
| !! | AGGAGGCCTTATTGTTGTGG+AGG | - | chr6_4:82774964-82774983 | Msa1000050:intron | 50.0% |
| !! | GGAGGCCTTATTGTTGTGGA+GGG | - | chr6_4:82774965-82774984 | Msa1000050:intron | 50.0% |
| !! | GAGGCCTTATTGTTGTGGAG+GGG | - | chr6_4:82774966-82774985 | Msa1000050:intron | 50.0% |
| CGCAAGCCATCCATGTTTGT+TGG | + | chr6_4:82775321-82775340 | None:intergenic | 50.0% | |
| !! | GTGGTGAAGAGTACTCCCTC+CGG | - | chr6_4:82774434-82774453 | Msa1000050:intron | 55.0% |
| GATGAGAGTGACGATGCTGG+AGG | - | chr6_4:82774644-82774663 | Msa1000050:CDS | 55.0% | |
| TATGGTAGGGCAGGCAAAGG+AGG | - | chr6_4:82774947-82774966 | Msa1000050:intron | 55.0% | |
| !! | CCCTTGGTGCCACCCATCAT+GGG | + | chr6_4:82773833-82773852 | None:intergenic | 60.0% |
| !! | CCCATGATGGGTGGCACCAA+GGG | - | chr6_4:82773830-82773849 | Msa1000050:intron | 60.0% |
| !! | ACCCTTGGTGCCACCCATCA+TGG | + | chr6_4:82773834-82773853 | None:intergenic | 60.0% |
| GGGTGGCACCAAGGGTTGAA+CGG | - | chr6_4:82773838-82773857 | Msa1000050:intron | 60.0% | |
| !! | GCGGCAGAAGGGTGTTGATC+AGG | + | chr6_4:82775165-82775184 | None:intergenic | 60.0% |
| CACTCTGCGATCGCAGCTCA+AGG | - | chr6_4:82775246-82775265 | Msa1000050:intron | 60.0% | |
| !! | GCCCATGATGGGTGGCACCA+AGG | - | chr6_4:82773829-82773848 | Msa1000050:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 82772243 | 82775378 | 82772243 | ID=Msa1000050;Name=Msa1000050 |
| chr6_4 | mRNA | 82772243 | 82775378 | 82772243 | ID=Msa1000050-mRNA-1;Parent=Msa1000050;Name=Msa1000050-mRNA-1;_AED=0.20;_eAED=0.35;_QI=0|0|0|1|0|0|4|0|389 |
| chr6_4 | exon | 82775260 | 82775378 | 82775260 | ID=Msa1000050-mRNA-1:exon:15948;Parent=Msa1000050-mRNA-1 |
| chr6_4 | exon | 82774996 | 82775213 | 82774996 | ID=Msa1000050-mRNA-1:exon:15947;Parent=Msa1000050-mRNA-1 |
| chr6_4 | exon | 82774639 | 82774823 | 82774639 | ID=Msa1000050-mRNA-1:exon:15946;Parent=Msa1000050-mRNA-1 |
| chr6_4 | exon | 82772243 | 82772890 | 82772243 | ID=Msa1000050-mRNA-1:exon:15945;Parent=Msa1000050-mRNA-1 |
| chr6_4 | CDS | 82775260 | 82775378 | 82775260 | ID=Msa1000050-mRNA-1:cds;Parent=Msa1000050-mRNA-1 |
| chr6_4 | CDS | 82774996 | 82775213 | 82774996 | ID=Msa1000050-mRNA-1:cds;Parent=Msa1000050-mRNA-1 |
| chr6_4 | CDS | 82774639 | 82774823 | 82774639 | ID=Msa1000050-mRNA-1:cds;Parent=Msa1000050-mRNA-1 |
| chr6_4 | CDS | 82772243 | 82772890 | 82772243 | ID=Msa1000050-mRNA-1:cds;Parent=Msa1000050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
