AlfalfaGEDB | Msa1018650

M. sativa cultivar zhongmu-4 / Msa1018650

KEGG: K01148
GO: GO:0003674 GO:0005488 GO:0043167 GO:0043169
PFAM: PF04857.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018650	XP_024627337.1	96.302	622	22	1	3	623	4	625	0.0	1209

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018650	sp\|Q8W4C3\|PARNL_ARATH	51.948	616	267	14	21	623	19	618	0.0	626

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018650	A0A396GX24	96.302	622	22	1	3	623	4	625	0.0	1209

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044710	Msa1018650	0.802109	6.556587e-49	-8.615850e-47
Msa0091010	Msa1018650	0.802023	6.829578e-49	-8.615850e-47
Msa0119850	Msa1018650	0.802025	6.823572e-49	-8.615850e-47
Msa0160550	Msa1018650	0.806984	6.306674e-50	-8.615850e-47
Msa0183370	Msa1018650	0.805039	1.618232e-49	-8.615850e-47
Msa0193120	Msa1018650	0.802554	5.309376e-49	-8.615850e-47
Msa0267310	Msa1018650	0.815480	9.046232e-52	-8.615850e-47
Msa0279790	Msa1018650	0.802927	4.446523e-49	-8.615850e-47
Msa0358170	Msa1018650	0.827925	1.195313e-54	-8.615850e-47
Msa0540070	Msa1018650	0.810601	1.062777e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018650	MtrunA17_Chr7g0234031	96.302	622	22	1	3	623	4	625	0.0	1209
Msa1018650	MtrunA17_Chr3g0102481	31.310	626	354	22	24	587	35	646	4.21e-75	253
Msa1018650	MtrunA17_Chr7g0234011	93.878	49	3	0	575	623	1	49	4.99e-26	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1018650	AT3G25430.1	51.948	616	267	14	21	623	19	618	0.0	626
Msa1018650	AT3G25430.2	50.487	616	259	15	21	623	19	601	0.0	595
Msa1018650	AT1G55870.1	28.013	614	379	18	28	590	38	639	4.73e-64	224
Msa1018650	AT1G55870.4	23.371	445	285	15	191	590	22	455	5.30e-21	97.4
Msa1018650	AT1G55870.2	23.620	326	211	11	300	590	7	329	5.66e-15	77.4
Msa1018650	AT1G55870.3	23.620	326	211	11	300	590	7	329	5.66e-15	77.4

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Find 136 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTATCAGCAACAGT+AGG	0.616660	7_1:+39045039	None:intergenic
AAAAGATGTCATGGGATTCA+CGG	0.510431	7_1:+39043097	None:intergenic
AAAATCGGAATTTGAGATGT+GGG	0.504585	7_1:+39048574	None:intergenic
AAACACCATTAAGGCAATTG+TGG	0.519144	7_1:+39044082	None:intergenic
AAAGAAAACCAGATATTCAA+TGG	0.503015	7_1:-39042810	Msa1018650:CDS
AAAGGCTGAACACGGTGCCA+CGG	0.617100	7_1:+39048509	None:intergenic
AACACCATTAAGGCAATTGT+GGG	0.530873	7_1:+39044083	None:intergenic
AACAGTGAACAAATTAGTGG+AGG	0.624257	7_1:-39042982	Msa1018650:CDS
AACGACGCCGTATCAATCAA+TGG	0.564733	7_1:-39048726	Msa1018650:exon
AAGAAGCTGAAAGCGCTGAG+CGG	0.681113	7_1:+39048448	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTGAAATGGCGATAAAAT+CGG	+	chr7_1:39042772-39042791	None:intergenic	30.0%
TAGAATCTGTAACAGAAAAC+GGG	+	chr7_1:39042920-39042939	None:intergenic	30.0%
ATTGTAGTTAGAAGAACTCA+CGG	+	chr7_1:39042960-39042979	None:intergenic	30.0%
GCATTATTCTTGGACTTTAA+TGG	-	chr7_1:39043733-39043752	Msa1018650:intron	30.0%
TCTGTAAGGTTTACTCAAAA+TGG	+	chr7_1:39044336-39044355	None:intergenic	30.0%
GACTAATGTACTTAAGTCTA+CGG	+	chr7_1:39044396-39044415	None:intergenic	30.0%
ATTCATATTGAAGGTTTGTC+TGG	+	chr7_1:39044620-39044639	None:intergenic	30.0%
TGACCGAAAATTCATATTGA+AGG	+	chr7_1:39044629-39044648	None:intergenic	30.0%
TGTGATAAAAATCAATGACC+TGG	-	chr7_1:39044837-39044856	Msa1018650:CDS	30.0%
TTTCAAACAACAAATAGTCC+AGG	+	chr7_1:39044858-39044877	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	39042579	39048771	39042579	ID=Msa1018650;Name=Msa1018650
chr7_1	mRNA	39042579	39048771	39042579	ID=Msa1018650-mRNA-1;Parent=Msa1018650;Name=Msa1018650-mRNA-1;_AED=0.02;_eAED=0.02;_QI=42\|1\|1\|1\|1\|1\|8\|195\|623
chr7_1	exon	39042579	39043420	39042579	ID=Msa1018650-mRNA-1:exon:7523;Parent=Msa1018650-mRNA-1
chr7_1	exon	39043774	39043989	39043774	ID=Msa1018650-mRNA-1:exon:7522;Parent=Msa1018650-mRNA-1
chr7_1	exon	39044088	39044202	39044088	ID=Msa1018650-mRNA-1:exon:7521;Parent=Msa1018650-mRNA-1
chr7_1	exon	39044279	39044395	39044279	ID=Msa1018650-mRNA-1:exon:7520;Parent=Msa1018650-mRNA-1
chr7_1	exon	39044769	39044881	39044769	ID=Msa1018650-mRNA-1:exon:7519;Parent=Msa1018650-mRNA-1
chr7_1	exon	39044962	39045156	39044962	ID=Msa1018650-mRNA-1:exon:7518;Parent=Msa1018650-mRNA-1
chr7_1	exon	39046226	39046356	39046226	ID=Msa1018650-mRNA-1:exon:7517;Parent=Msa1018650-mRNA-1
chr7_1	exon	39048392	39048771	39048392	ID=Msa1018650-mRNA-1:exon:7516;Parent=Msa1018650-mRNA-1
chr7_1	five_prime_UTR	39048730	39048771	39048730	ID=Msa1018650-mRNA-1:five_prime_utr;Parent=Msa1018650-mRNA-1
chr7_1	CDS	39048392	39048729	39048392	ID=Msa1018650-mRNA-1:cds;Parent=Msa1018650-mRNA-1
chr7_1	CDS	39046226	39046356	39046226	ID=Msa1018650-mRNA-1:cds;Parent=Msa1018650-mRNA-1
chr7_1	CDS	39044962	39045156	39044962	ID=Msa1018650-mRNA-1:cds;Parent=Msa1018650-mRNA-1
chr7_1	CDS	39044769	39044881	39044769	ID=Msa1018650-mRNA-1:cds;Parent=Msa1018650-mRNA-1
chr7_1	CDS	39044279	39044395	39044279	ID=Msa1018650-mRNA-1:cds;Parent=Msa1018650-mRNA-1
chr7_1	CDS	39044088	39044202	39044088	ID=Msa1018650-mRNA-1:cds;Parent=Msa1018650-mRNA-1
chr7_1	CDS	39043774	39043989	39043774	ID=Msa1018650-mRNA-1:cds;Parent=Msa1018650-mRNA-1
chr7_1	CDS	39042774	39043420	39042774	ID=Msa1018650-mRNA-1:cds;Parent=Msa1018650-mRNA-1
chr7_1	three_prime_UTR	39042579	39042773	39042579	ID=Msa1018650-mRNA-1:three_prime_utr;Parent=Msa1018650-mRNA-1

Gene Sequence

>Msa1018650

ATGGTTTCTTCACTCTTCAATTTCCTACTACATCACCAAAAACGTTCACTCTGCACCAAAATCTCCTCTTCGAAATGGAAAGTAAAACAAGTCACAATCTCCAACTTCAACGAATCACTACAAGAAATCAAAACCCACATCTCAAATTCCGATTTTATCGCCATTTCAATGGAGAAAACAGGTTCTTCTTCAACAACTCCGTGGCACCGTGTTCAGCCTTTCGATACGGCGGAAACCGCTTATCTGAAAGCTAGTCAGTCCGCTCAGCGCTTTCAGCTTCTTCAGTTCGCTGTCTGCCCGTTTTCTGTTACAGATTCTAACAACCTCGTTGCTCATCCGTATAATTTCCTTTTGTTTCCAAGGGATGAGTTAAAGCTTGGTATGCCTGCTTACAGTTTTTTGTGTCAGACGTCTCATTTGGCAACCATGGCTCGCCAGGGTTTTGATTTCAATGCTTGCATATATGAAGGTATATCATATTTATCTAGAGCACAAGAGTCAGTTGCTAAAATTCGTTTAGGGACCAGTTCTCCATCTCTTGGTGTGATGAAATCTTCTTCACCTCCTACTGTTGCTGATACAGTTTTTATTGAGAGGATTAAATCACGGATTAAACATTGGAGAAATACATGTAAAAATTCAGGCACAAAGACAAGCAAAGATGACGAACTTATCAACTCTATTAGGAATATTATCTCTGGTAGTGAACAATTCAAATCAAGACCGTGCTTGAATGTAGATGTTTGCAGTGAGCGCCAAGTGCAACTAATTCTGCAGATGGTAGTAGACTTCTCAGATGACTTGCTTCCTTTAGTGATACCTTCAAAGGGTGGGACAACTCAGGCAGTACGTGTCGTTTTGACGAAATCAAGAGAAGATAAGGAAGTGTTGGAGAGAGAGCTTCGTAGTTTGGAAGAGGAGGAGAGCAAGAAAATTCGTGGATTTCGAGAGGTGATCGATTTGATTTCCGCTTCAGAGAAACCTGTTATCTCCCACAATTGCCTTAATGACTGTACACTTATTCATTCAAAATTCATCGCACCACTGCCATCAGAAGTAGATGAGTTTGTGAGCTCCTTGTGCAAATTTTTCCCCAAAGTACTTGACGTGAATTATTTAATGAAGAAAAGTGGAACCATGAAAAAAGTGACCAACATCCGTAATGCTTTATCCTACGTGAATACTCATTTCCTTGCACCAGTTGACATGGACATTCCTGACCAAGATACAGTAAACAAAGGCAAGATTGATGGCCTTGATGCTTTAAGGCTATCCTATTTATTTATGAAGCTCTGCTCTGTATTGAAAATTTCCCCTGTTGTAACTGAATCTGGAAACAGGCAACTGGCCCCACAGCTTGAAGACTTCACTAATGTATTCCATTCATGGTCAGCCAATATCCAAGAATCATGTAACGAGGATGTTAGTGTGTGGACCAATAATACAAGAAAAGCAAATTGCGAACATTTAGTATTCTTATGGGGATTTAAGTTTGGTATGACGGCCGGCATGTTGAAGAGTGTTCTCCGTGAATCCCATGACATCTTTTTAGAAGAGTTTGATGTTAAATTTGTGGACAAGAGTTGTGCCTTTGTCGTTTTCTGGGAACCTGGTTTGTCGAAAGATTTTCTAAATGTAATGAACAGTGAACAAATTAGTGGAGGCTTAAAGGAGTTAGTATCAGATGGCTTGAGGGTAACAGGTTATGAGACCTATAGAACAATGTGTAGGCTAGGTTTGTGGGAGATAGATCTTGCTGAGTCTTTAGAGAAAACCTTGGAGTGTTCTCTCAATGATACAGAGATTCATAGTGAAAGAAAACCAGATATTCAATGGTGTAATGACAATGTAATCAACTTGGATGATCTTTAA

Protein sequence

>Msa1018650

MVSSLFNFLLHHQKRSLCTKISSSKWKVKQVTISNFNESLQEIKTHISNSDFIAISMEKTGSSSTTPWHRVQPFDTAETAYLKASQSAQRFQLLQFAVCPFSVTDSNNLVAHPYNFLLFPRDELKLGMPAYSFLCQTSHLATMARQGFDFNACIYEGISYLSRAQESVAKIRLGTSSPSLGVMKSSSPPTVADTVFIERIKSRIKHWRNTCKNSGTKTSKDDELINSIRNIISGSEQFKSRPCLNVDVCSERQVQLILQMVVDFSDDLLPLVIPSKGGTTQAVRVVLTKSREDKEVLERELRSLEEEESKKIRGFREVIDLISASEKPVISHNCLNDCTLIHSKFIAPLPSEVDEFVSSLCKFFPKVLDVNYLMKKSGTMKKVTNIRNALSYVNTHFLAPVDMDIPDQDTVNKGKIDGLDALRLSYLFMKLCSVLKISPVVTESGNRQLAPQLEDFTNVFHSWSANIQESCNEDVSVWTNNTRKANCEHLVFLWGFKFGMTAGMLKSVLRESHDIFLEEFDVKFVDKSCAFVVFWEPGLSKDFLNVMNSEQISGGLKELVSDGLRVTGYETYRTMCRLGLWEIDLAESLEKTLECSLNDTEIHSERKPDIQWCNDNVINLDDL*