AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0193120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193120 MtrunA17_Chr2g0283151 98.630 146 2 0 1 146 167 312 2.61e-102 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193120 AT2G36230.1 82.270 141 25 0 1 141 160 300 3.54e-81 241

Find 58 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTTGCTGATGAGTTTC+TGG 0.046576 2_1:+8942444 Msa0193120:CDS
GAGAATGCCTTCGACTTATT+TGG 0.208019 2_1:+8941198 Msa0193120:five_prime_UTR
GCTGATGAGTTTCTGGTTCA+TGG 0.240895 2_1:+8942451 Msa0193120:CDS
TTATTTGTAATAATTAAATA+TGG 0.293123 2_1:+8944043 Msa0193120:three_prime_UTR
AAAGATCTGGTTCGGATTGT+TGG 0.330297 2_1:+8942000 Msa0193120:CDS
GTGGATGAATGGTAAAATTA+AGG 0.356843 2_1:+8941290 Msa0193120:five_prime_UTR
CTATATTTATCAATATAACT+TGG 0.396110 2_1:+8941175 Msa0193120:five_prime_UTR
ATTTGCTTCACTGTTTCTCT+TGG 0.396285 2_1:+8943685 Msa0193120:three_prime_UTR
TAATTGTTTGAGTTACATTC+AGG 0.409137 2_1:+8941346 Msa0193120:five_prime_UTR
ATCAACATAGCATCGTGTTT+CGG 0.424655 2_1:+8943895 Msa0193120:three_prime_UTR
AGTGAAGTCCAATCGTTCAT+TGG 0.431521 2_1:-8943930 None:intergenic
AAAGGCTAAAAGATCTGGTT+CGG 0.438014 2_1:+8941992 Msa0193120:CDS
GGCAAGAAACTCCATTACTT+TGG 0.447787 2_1:-8942422 None:intergenic
ATGCAATCGTCACTGATAGA+TGG 0.449249 2_1:+8942371 Msa0193120:CDS
CAGAAACTCATCAGCAAAGT+TGG 0.449860 2_1:-8942443 None:intergenic
CTCATGACAAGTTAATGATC+AGG 0.453688 2_1:-8943759 None:intergenic
TTCGGATTGTTGGAAAAGAA+AGG 0.457181 2_1:+8942010 Msa0193120:CDS
TTCCTCTACTAAACTTATTG+TGG 0.464291 2_1:+8941271 Msa0193120:five_prime_UTR
TCTTGAAAGGCTAAAAGATC+TGG 0.465149 2_1:+8941987 Msa0193120:CDS
GTTAATGATCAGGCAAATGC+TGG 0.465854 2_1:-8943749 None:intergenic
TGTGACAGTAATGGACGATT+TGG 0.466828 2_1:+8943478 Msa0193120:CDS
TGTATTCAACAATGGACAAA+TGG 0.467573 2_1:+8941963 Msa0193120:exon
CTAAACTTATTGTGGATGAA+TGG 0.470446 2_1:+8941279 Msa0193120:five_prime_UTR
AGATTTGTTGAAGTTAGGGG+TGG 0.471757 2_1:+8943645 Msa0193120:three_prime_UTR
GTGAAGTCCAATCGTTCATT+GGG 0.485184 2_1:-8943929 None:intergenic
TGTTACTGTTGGCAGTGCCT+TGG 0.487982 2_1:+8943535 Msa0193120:CDS
CTTATAAAGATGTTGTAGCT+TGG 0.495973 2_1:+8943579 Msa0193120:CDS
TCTTGGTGTAACCTTTAGTC+CGG 0.506331 2_1:+8943702 Msa0193120:three_prime_UTR
CAGATTCCTGTGACATATGC+TGG 0.509158 2_1:+8943452 Msa0193120:intron
GAAGAGCTTGTAGCTCTGCT+TGG 0.519054 2_1:+8943339 Msa0193120:CDS
AATTAAGGTGGTCTGCAAGT+TGG 0.529361 2_1:+8941305 Msa0193120:five_prime_UTR
GATTTGTTGAAGTTAGGGGT+GGG 0.536176 2_1:+8943646 Msa0193120:three_prime_UTR
GTTCATGGCGTTGATGTTGA+AGG 0.540721 2_1:+8942466 Msa0193120:CDS
GGTGGTCTGCAAGTTGGAGG+TGG 0.543601 2_1:+8941311 Msa0193120:five_prime_UTR
ATTAAGGAGATTCTTGTACA+TGG 0.545725 2_1:-8943858 None:intergenic
TGGAAAAGAAAGGCTTGTGT+TGG 0.548317 2_1:+8942020 Msa0193120:CDS
TATATTTATCAATATAACTT+GGG 0.555883 2_1:+8941176 Msa0193120:five_prime_UTR
ATCCACAATAAGTTTAGTAG+AGG 0.558208 2_1:-8941273 None:intergenic
TTTAGATTTGTTGAAGTTAG+GGG 0.559058 2_1:+8943642 Msa0193120:three_prime_UTR
TAAGGTGGTCTGCAAGTTGG+AGG 0.562561 2_1:+8941308 Msa0193120:five_prime_UTR
ATGGACAAATGGATCTTGAA+AGG 0.564038 2_1:+8941974 Msa0193120:exon
TTGTATGCCCAATGAACGAT+TGG 0.572075 2_1:+8943922 Msa0193120:three_prime_UTR
AACATCTGGAATGGATAATG+TGG 0.589785 2_1:+8943511 Msa0193120:CDS
GAAAATGCCAAATAAGTCGA+AGG 0.596901 2_1:-8941205 None:intergenic
TGCTGGTGGTGTGACAGTAA+TGG 0.600613 2_1:+8943469 Msa0193120:CDS
TCTGCTTGGAAAGCACTCAC+CGG 0.608734 2_1:+8943353 Msa0193120:CDS
GTCACTTGATGCCAAAGTAA+TGG 0.608978 2_1:+8942411 Msa0193120:CDS
TGTTTGAGTTACATTCAGGA+AGG 0.614452 2_1:+8941350 Msa0193120:five_prime_UTR
ACACCACCAGCATATGTCAC+AGG 0.617222 2_1:-8943458 None:intergenic
TTACAGTATGTATTCAACAA+TGG 0.619746 2_1:+8941955 Msa0193120:intron
TAGTGTAAGGCAGTGCATGT+AGG 0.620811 2_1:+8943828 Msa0193120:three_prime_UTR
GATAATGTGGATGTTACTGT+TGG 0.628001 2_1:+8943524 Msa0193120:CDS
GGGTGGGTGAGCTCTGAGCA+AGG 0.640540 2_1:+8943662 Msa0193120:three_prime_UTR
GATGAATGGTAAAATTAAGG+TGG 0.642831 2_1:+8941293 Msa0193120:five_prime_UTR
TATAGTCATGAAGTCAGTCA+AGG 0.648734 2_1:-8941157 None:intergenic
CAGTAATGGACGATTTGGAG+AGG 0.662099 2_1:+8943483 Msa0193120:CDS
TTACAGATGTCACAATGACA+TGG 0.680784 2_1:-8941379 None:intergenic
ATTCCTGTGACATATGCTGG+TGG 0.697373 2_1:+8943455 Msa0193120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTATCAATATAACTT+GGG + chr2_1:8941176-8941195 Msa0193120:five_prime_UTR 10.0%
!! CTATATTTATCAATATAACT+TGG + chr2_1:8941175-8941194 Msa0193120:five_prime_UTR 15.0%
!! CATATATTAATATACTGTAA+TGG + chr2_1:8941750-8941769 Msa0193120:intron 15.0%
!! TAATTGAATCAATAAATACA+TGG - chr2_1:8941935-8941954 None:intergenic 15.0%
!!! ATTGTTTTCTTTATATTTGA+AGG + chr2_1:8942069-8942088 Msa0193120:intron 15.0%
!! AAATTTAACAAATGAAAGTA+GGG - chr2_1:8942705-8942724 None:intergenic 15.0%
!! TAAATTTAACAAATGAAAGT+AGG - chr2_1:8942706-8942725 None:intergenic 15.0%
!! AATATTTCAATGGATAAATA+TGG - chr2_1:8943278-8943297 None:intergenic 15.0%
!!! ATATGATTTTAACGATATTA+AGG - chr2_1:8943877-8943896 None:intergenic 15.0%
!! TTTACAAAATGTGTATAGAT+AGG + chr2_1:8941702-8941721 Msa0193120:intron 20.0%
!! TATTAATATATGTTCGAAGA+AGG - chr2_1:8941742-8941761 None:intergenic 20.0%
!! AGATGAAACATTAAAATAAC+AGG + chr2_1:8942135-8942154 Msa0193120:intron 20.0%
!! AATTTAACAAATGAAAGTAG+GGG - chr2_1:8942704-8942723 None:intergenic 20.0%
!!! AAGTTTTATATTAAGTGCAT+TGG + chr2_1:8942795-8942814 Msa0193120:intron 20.0%
!!! TTTATTTTGTACTTCAATCA+AGG + chr2_1:8943118-8943137 Msa0193120:intron 20.0%
!! TTGACAATAAAATTAAGAGT+TGG - chr2_1:8943386-8943405 None:intergenic 20.0%
!!! TTTTTAGATTTGTTGAAGTT+AGG + chr2_1:8943640-8943659 Msa0193120:three_prime_UTR 20.0%
!!! TTTTAGATTTGTTGAAGTTA+GGG + chr2_1:8943641-8943660 Msa0193120:three_prime_UTR 20.0%
!! TAATTGTTTGAGTTACATTC+AGG + chr2_1:8941346-8941365 Msa0193120:five_prime_UTR 25.0%
!!! AAGAACATATGTTTTTCAAG+CGG + chr2_1:8941802-8941821 Msa0193120:intron 25.0%
!!! GAAATGTACATTAATTTGCT+TGG + chr2_1:8941828-8941847 Msa0193120:intron 25.0%
! TGAATCAATAAATACATGGA+CGG - chr2_1:8941931-8941950 None:intergenic 25.0%
! TTACAGTATGTATTCAACAA+TGG + chr2_1:8941955-8941974 Msa0193120:intron 25.0%
!!! AACATCATGAAATTGTTTTG+AGG - chr2_1:8942265-8942284 None:intergenic 25.0%
!! ATCAAATGCATTGAAGTATT+GGG - chr2_1:8942294-8942313 None:intergenic 25.0%
! TCAATGCATTTGATCATAAT+TGG + chr2_1:8942300-8942319 Msa0193120:intron 25.0%
!!! CATTTCTTTTTAAGCACTTA+TGG + chr2_1:8942324-8942343 Msa0193120:intron 25.0%
! TCTTAAGATAATTGCATACA+AGG + chr2_1:8942515-8942534 Msa0193120:intron 25.0%
! CTTAAGATAATTGCATACAA+GGG + chr2_1:8942516-8942535 Msa0193120:intron 25.0%
! AACTAACTCAATAACAAGAA+TGG - chr2_1:8942544-8942563 None:intergenic 25.0%
!!! ATTCTTGTTATTGAGTTAGT+TGG + chr2_1:8942543-8942562 Msa0193120:intron 25.0%
!!! TTCTTGTTATTGAGTTAGTT+GGG + chr2_1:8942544-8942563 Msa0193120:intron 25.0%
!!! TTGTTCTGTTTTTTGTTTCT+TGG + chr2_1:8942644-8942663 Msa0193120:intron 25.0%
! TAAAACTTCAAATGAATTGC+TGG - chr2_1:8942783-8942802 None:intergenic 25.0%
!!! AGAAGAAGTGTTTTTGTATT+TGG + chr2_1:8943040-8943059 Msa0193120:intron 25.0%
! CACTATCAGAAATATTTCAA+TGG - chr2_1:8943288-8943307 None:intergenic 25.0%
!! ATTGTCAAATGTCAACTTTT+AGG + chr2_1:8943398-8943417 Msa0193120:intron 25.0%
!!! TTTAGATTTGTTGAAGTTAG+GGG + chr2_1:8943642-8943661 Msa0193120:three_prime_UTR 25.0%
! CATAAATTGCTAAAAATCAC+CGG - chr2_1:8943724-8943743 None:intergenic 25.0%
!! GGCATTTTCTTTGATTTTCA+TGG + chr2_1:8941219-8941238 Msa0193120:five_prime_UTR 30.0%
TTCCTCTACTAAACTTATTG+TGG + chr2_1:8941271-8941290 Msa0193120:five_prime_UTR 30.0%
ATCCACAATAAGTTTAGTAG+AGG - chr2_1:8941276-8941295 None:intergenic 30.0%
CTAAACTTATTGTGGATGAA+TGG + chr2_1:8941279-8941298 Msa0193120:five_prime_UTR 30.0%
GTGGATGAATGGTAAAATTA+AGG + chr2_1:8941290-8941309 Msa0193120:five_prime_UTR 30.0%
GATGAATGGTAAAATTAAGG+TGG + chr2_1:8941293-8941312 Msa0193120:five_prime_UTR 30.0%
! GGGTATTCAACTTTTATGAT+AGG + chr2_1:8941427-8941446 Msa0193120:intron 30.0%
AATATATGTTCGAAGAAGGT+TGG - chr2_1:8941738-8941757 None:intergenic 30.0%
! TAGCACATATTTTTCACAGT+AGG - chr2_1:8941883-8941902 None:intergenic 30.0%
TGTATTCAACAATGGACAAA+TGG + chr2_1:8941963-8941982 Msa0193120:exon 30.0%
GTGAATTGCATTCAAGAAAA+AGG + chr2_1:8942091-8942110 Msa0193120:intron 30.0%
AAGAGCAATGCCATAAAATA+TGG + chr2_1:8942176-8942195 Msa0193120:intron 30.0%
AATGCCATAAAATATGGTGT+GGG + chr2_1:8942182-8942201 Msa0193120:intron 30.0%
GATCAAATGCATTGAAGTAT+TGG - chr2_1:8942295-8942314 None:intergenic 30.0%
!! GAAATAGAAAAGTGTTCTGT+AGG + chr2_1:8942617-8942636 Msa0193120:intron 30.0%
!!! CTGTTTTTTGTTTCTTGGTT+TGG + chr2_1:8942649-8942668 Msa0193120:intron 30.0%
!! CACTATTTCTAATGTTTCAG+AGG + chr2_1:8942678-8942697 Msa0193120:intron 30.0%
! TTTGCTGTGTTATTAGCTAA+TGG + chr2_1:8942980-8942999 Msa0193120:intron 30.0%
ATAACTTAACATACTTCCAC+AGG - chr2_1:8943145-8943164 None:intergenic 30.0%
CTTATAAAGATGTTGTAGCT+TGG + chr2_1:8943579-8943598 Msa0193120:CDS 30.0%
! ACATTTTGTGATGTAGTGTA+AGG + chr2_1:8943815-8943834 Msa0193120:three_prime_UTR 30.0%
ATTAAGGAGATTCTTGTACA+TGG - chr2_1:8943861-8943880 None:intergenic 30.0%
TATAGTCATGAAGTCAGTCA+AGG - chr2_1:8941160-8941179 None:intergenic 35.0%
GAAAATGCCAAATAAGTCGA+AGG - chr2_1:8941208-8941227 None:intergenic 35.0%
! TGTTTGAGTTACATTCAGGA+AGG + chr2_1:8941350-8941369 Msa0193120:five_prime_UTR 35.0%
TTACAGATGTCACAATGACA+TGG - chr2_1:8941382-8941401 None:intergenic 35.0%
! TATCCCTTCTCTCTTTCTTT+TGG + chr2_1:8941406-8941425 Msa0193120:intron 35.0%
! ATCCCTTCTCTCTTTCTTTT+GGG + chr2_1:8941407-8941426 Msa0193120:intron 35.0%
TACCCAAAAGAAAGAGAGAA+GGG - chr2_1:8941412-8941431 None:intergenic 35.0%
ATACCCAAAAGAAAGAGAGA+AGG - chr2_1:8941413-8941432 None:intergenic 35.0%
! GATTGGCTAGTTAACTAACT+AGG - chr2_1:8941457-8941476 None:intergenic 35.0%
GCTAGCTAACTAACTATGAT+TGG - chr2_1:8941474-8941493 None:intergenic 35.0%
GGTTAGGATGTGATGTTATA+AGG + chr2_1:8941510-8941529 Msa0193120:intron 35.0%
TAGGATGTGATGTTATAAGG+AGG + chr2_1:8941513-8941532 Msa0193120:intron 35.0%
AGGATGTGATGTTATAAGGA+GGG + chr2_1:8941514-8941533 Msa0193120:intron 35.0%
AGAAGAGAATTAGACGAATC+TGG + chr2_1:8941539-8941558 Msa0193120:intron 35.0%
! TACCCTGTATTTTTCTCTCT+AGG + chr2_1:8941625-8941644 Msa0193120:intron 35.0%
GACCTAGAGAGAAAAATACA+GGG - chr2_1:8941630-8941649 None:intergenic 35.0%
TGACCTAGAGAGAAAAATAC+AGG - chr2_1:8941631-8941650 None:intergenic 35.0%
ATGGACAAATGGATCTTGAA+AGG + chr2_1:8941974-8941993 Msa0193120:exon 35.0%
TCTTGAAAGGCTAAAAGATC+TGG + chr2_1:8941987-8942006 Msa0193120:CDS 35.0%
AAAGGCTAAAAGATCTGGTT+CGG + chr2_1:8941992-8942011 Msa0193120:CDS 35.0%
TTCGGATTGTTGGAAAAGAA+AGG + chr2_1:8942010-8942029 Msa0193120:CDS 35.0%
CAATGCCATAAAATATGGTG+TGG + chr2_1:8942181-8942200 Msa0193120:intron 35.0%
ATGCCATAAAATATGGTGTG+GGG + chr2_1:8942183-8942202 Msa0193120:intron 35.0%
TTGGAGAGGATAAAAACATC+TGG + chr2_1:8943497-8943516 Msa0193120:CDS 35.0%
GAGGATAAAAACATCTGGAA+TGG + chr2_1:8943502-8943521 Msa0193120:CDS 35.0%
! AACATCTGGAATGGATAATG+TGG + chr2_1:8943511-8943530 Msa0193120:CDS 35.0%
GATAATGTGGATGTTACTGT+TGG + chr2_1:8943524-8943543 Msa0193120:CDS 35.0%
! ATTTGCTTCACTGTTTCTCT+TGG + chr2_1:8943685-8943704 Msa0193120:three_prime_UTR 35.0%
CTCATGACAAGTTAATGATC+AGG - chr2_1:8943762-8943781 None:intergenic 35.0%
ATCAACATAGCATCGTGTTT+CGG + chr2_1:8943895-8943914 Msa0193120:three_prime_UTR 35.0%
GAGAATGCCTTCGACTTATT+TGG + chr2_1:8941198-8941217 Msa0193120:five_prime_UTR 40.0%
AATTAAGGTGGTCTGCAAGT+TGG + chr2_1:8941305-8941324 Msa0193120:five_prime_UTR 40.0%
!! GTTAGTTAGCTAGCCTTAGT+TGG + chr2_1:8941480-8941499 Msa0193120:intron 40.0%
!! AGCTAGCCTTAGTTGGTTAA+AGG + chr2_1:8941487-8941506 Msa0193120:intron 40.0%
!! GCTAGCCTTAGTTGGTTAAA+GGG + chr2_1:8941488-8941507 Msa0193120:intron 40.0%
!! CTAGCCTTAGTTGGTTAAAG+GGG + chr2_1:8941489-8941508 Msa0193120:intron 40.0%
CTAACCCCTTTAACCAACTA+AGG - chr2_1:8941496-8941515 None:intergenic 40.0%
CTTAGTTGGTTAAAGGGGTT+AGG + chr2_1:8941494-8941513 Msa0193120:intron 40.0%
TCTGGAAATAAGTCAGAGCT+AGG + chr2_1:8941557-8941576 Msa0193120:intron 40.0%
AAATCACTGAATCAGCCCTA+GGG + chr2_1:8941598-8941617 Msa0193120:intron 40.0%
AATACAGGGTACAATCCCTA+GGG - chr2_1:8941616-8941635 None:intergenic 40.0%
AAATACAGGGTACAATCCCT+AGG - chr2_1:8941617-8941636 None:intergenic 40.0%
GCGTAGTTACAGATCAAGAT+TGG - chr2_1:8941858-8941877 None:intergenic 40.0%
!! AAAGATCTGGTTCGGATTGT+TGG + chr2_1:8942000-8942019 Msa0193120:CDS 40.0%
TGGAAAAGAAAGGCTTGTGT+TGG + chr2_1:8942020-8942039 Msa0193120:CDS 40.0%
GGATCTCAGTTGCAGAAAAA+AGG + chr2_1:8942041-8942060 Msa0193120:CDS 40.0%
TGCCATAAAATATGGTGTGG+GGG + chr2_1:8942184-8942203 Msa0193120:intron 40.0%
GAACTCGTGAAACTACTTCT+GGG - chr2_1:8942224-8942243 None:intergenic 40.0%
ATATTTACCTTCCTGAGCAC+TGG - chr2_1:8942353-8942372 None:intergenic 40.0%
ATGCAATCGTCACTGATAGA+TGG + chr2_1:8942371-8942390 Msa0193120:CDS 40.0%
GTCACTTGATGCCAAAGTAA+TGG + chr2_1:8942411-8942430 Msa0193120:CDS 40.0%
GGCAAGAAACTCCATTACTT+TGG - chr2_1:8942425-8942444 None:intergenic 40.0%
CAGAAACTCATCAGCAAAGT+TGG - chr2_1:8942446-8942465 None:intergenic 40.0%
CAACTTTGCTGATGAGTTTC+TGG + chr2_1:8942444-8942463 Msa0193120:CDS 40.0%
AAGAATGCACCTAGCAATCA+CGG + chr2_1:8943197-8943216 Msa0193120:intron 40.0%
AGTGAATGATCACTCCTTGT+AGG + chr2_1:8943304-8943323 Msa0193120:intron 40.0%
AATGATCACTCCTTGTAGGT+TGG + chr2_1:8943308-8943327 Msa0193120:intron 40.0%
ATGATCACTCCTTGTAGGTT+GGG + chr2_1:8943309-8943328 Msa0193120:intron 40.0%
TCATCAATTCCCAACCTACA+AGG - chr2_1:8943321-8943340 None:intergenic 40.0%
ATTAAGAGTTGGCTACCAAC+CGG - chr2_1:8943375-8943394 None:intergenic 40.0%
!! TGTGACAGTAATGGACGATT+TGG + chr2_1:8943478-8943497 Msa0193120:CDS 40.0%
TAACCAGCAAAAAGTCTCTG+TGG + chr2_1:8943604-8943623 Msa0193120:CDS 40.0%
!! AGATTTGTTGAAGTTAGGGG+TGG + chr2_1:8943645-8943664 Msa0193120:three_prime_UTR 40.0%
!! GATTTGTTGAAGTTAGGGGT+GGG + chr2_1:8943646-8943665 Msa0193120:three_prime_UTR 40.0%
! TCTTGGTGTAACCTTTAGTC+CGG + chr2_1:8943702-8943721 Msa0193120:three_prime_UTR 40.0%
GCTAAAAATCACCGGACTAA+AGG - chr2_1:8943716-8943735 None:intergenic 40.0%
GTTAATGATCAGGCAAATGC+TGG - chr2_1:8943752-8943771 None:intergenic 40.0%
TTGTATGCCCAATGAACGAT+TGG + chr2_1:8943922-8943941 Msa0193120:three_prime_UTR 40.0%
GTGAAGTCCAATCGTTCATT+GGG - chr2_1:8943932-8943951 None:intergenic 40.0%
AGTGAAGTCCAATCGTTCAT+TGG - chr2_1:8943933-8943952 None:intergenic 40.0%
TCAGAGCTAGGAGAGTTGAA+GGG + chr2_1:8941569-8941588 Msa0193120:intron 45.0%
CAAATCACTGAATCAGCCCT+AGG + chr2_1:8941597-8941616 Msa0193120:intron 45.0%
GCCATAAAATATGGTGTGGG+GGG + chr2_1:8942185-8942204 Msa0193120:intron 45.0%
CCATAAAATATGGTGTGGGG+GGG + chr2_1:8942186-8942205 Msa0193120:intron 45.0%
CGAACTCGTGAAACTACTTC+TGG - chr2_1:8942225-8942244 None:intergenic 45.0%
ACTTATGGTTTCCAGTGCTC+AGG + chr2_1:8942339-8942358 Msa0193120:intron 45.0%
!! GCTGATGAGTTTCTGGTTCA+TGG + chr2_1:8942451-8942470 Msa0193120:CDS 45.0%
!! GTTCATGGCGTTGATGTTGA+AGG + chr2_1:8942466-8942485 Msa0193120:CDS 45.0%
GTACTTCAATCAAGGTCCTG+TGG + chr2_1:8943126-8943145 Msa0193120:intron 45.0%
AGAATGCACCTAGCAATCAC+GGG + chr2_1:8943198-8943217 Msa0193120:intron 45.0%
CAGATTCCTGTGACATATGC+TGG + chr2_1:8943452-8943471 Msa0193120:intron 45.0%
ATTCCTGTGACATATGCTGG+TGG + chr2_1:8943455-8943474 Msa0193120:CDS 45.0%
!! CAGTAATGGACGATTTGGAG+AGG + chr2_1:8943483-8943502 Msa0193120:CDS 45.0%
! GCAGTGCCTTGGACATTTTT+GGG + chr2_1:8943546-8943565 Msa0193120:CDS 45.0%
! CAGTGCCTTGGACATTTTTG+GGG + chr2_1:8943547-8943566 Msa0193120:CDS 45.0%
!! AGTGCCTTGGACATTTTTGG+GGG + chr2_1:8943548-8943567 Msa0193120:CDS 45.0%
ATTCCCCCCAAAAATGTCCA+AGG - chr2_1:8943555-8943574 None:intergenic 45.0%
!! GGACATTTTTGGGGGGAATT+TGG + chr2_1:8943556-8943575 Msa0193120:CDS 45.0%
! AAGCCACAGAGACTTTTTGC+TGG - chr2_1:8943610-8943629 None:intergenic 45.0%
TAGTGTAAGGCAGTGCATGT+AGG + chr2_1:8943828-8943847 Msa0193120:three_prime_UTR 45.0%
!! TTATTTGTAATAATTAAATA+TGG + chr2_1:8944043-8944062 Msa0193120:three_prime_UTR 5.0%
! TAAGGTGGTCTGCAAGTTGG+AGG + chr2_1:8941308-8941327 Msa0193120:five_prime_UTR 50.0%
GTCAGAGCTAGGAGAGTTGA+AGG + chr2_1:8941568-8941587 Msa0193120:intron 50.0%
! CCCCCCCACACCATATTTTA+TGG - chr2_1:8942189-8942208 None:intergenic 50.0%
ATGGTTTCCAGTGCTCAGGA+AGG + chr2_1:8942343-8942362 Msa0193120:intron 50.0%
! GAAGAGCTTGTAGCTCTGCT+TGG + chr2_1:8943339-8943358 Msa0193120:CDS 50.0%
!! TCTGCTTGGAAAGCACTCAC+CGG + chr2_1:8943353-8943372 Msa0193120:CDS 50.0%
ACACCACCAGCATATGTCAC+AGG - chr2_1:8943461-8943480 None:intergenic 50.0%
! TGCTGGTGGTGTGACAGTAA+TGG + chr2_1:8943469-8943488 Msa0193120:CDS 50.0%
TGTTACTGTTGGCAGTGCCT+TGG + chr2_1:8943535-8943554 Msa0193120:CDS 50.0%
! GGCAGTGCCTTGGACATTTT+TGG + chr2_1:8943545-8943564 Msa0193120:CDS 50.0%
!! GTGCCTTGGACATTTTTGGG+GGG + chr2_1:8943549-8943568 Msa0193120:CDS 50.0%
GAACCAAGCCCGTGATTGCT+AGG - chr2_1:8943209-8943228 None:intergenic 55.0%
!! CTTGGAAAGCACTCACCGGT+TGG + chr2_1:8943357-8943376 Msa0193120:intron 55.0%
! GGTGGTCTGCAAGTTGGAGG+TGG + chr2_1:8941311-8941330 Msa0193120:five_prime_UTR 60.0%
GCACCTAGCAATCACGGGCT+TGG + chr2_1:8943203-8943222 Msa0193120:intron 60.0%
!! GGGTGGGTGAGCTCTGAGCA+AGG + chr2_1:8943662-8943681 Msa0193120:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 8941149 8944084 8941149 ID=Msa0193120;Name=Msa0193120
chr2_1 mRNA 8941149 8944084 8941149 ID=Msa0193120-mRNA-1;Parent=Msa0193120;Name=Msa0193120-mRNA-1;_AED=0.02;_eAED=0.02;_QI=270|1|1|1|0.75|0.6|5|453|146
chr2_1 exon 8941149 8941397 8941149 ID=Msa0193120-mRNA-1:exon:4059;Parent=Msa0193120-mRNA-1
chr2_1 exon 8941961 8942062 8941961 ID=Msa0193120-mRNA-1:exon:4060;Parent=Msa0193120-mRNA-1
chr2_1 exon 8942361 8942494 8942361 ID=Msa0193120-mRNA-1:exon:4061;Parent=Msa0193120-mRNA-1
chr2_1 exon 8943326 8943374 8943326 ID=Msa0193120-mRNA-1:exon:4062;Parent=Msa0193120-mRNA-1
chr2_1 exon 8943455 8944084 8943455 ID=Msa0193120-mRNA-1:exon:4063;Parent=Msa0193120-mRNA-1
chr2_1 five_prime_UTR 8941149 8941397 8941149 ID=Msa0193120-mRNA-1:five_prime_utr;Parent=Msa0193120-mRNA-1
chr2_1 five_prime_UTR 8941961 8941981 8941961 ID=Msa0193120-mRNA-1:five_prime_utr;Parent=Msa0193120-mRNA-1
chr2_1 CDS 8941982 8942062 8941982 ID=Msa0193120-mRNA-1:cds;Parent=Msa0193120-mRNA-1
chr2_1 CDS 8942361 8942494 8942361 ID=Msa0193120-mRNA-1:cds;Parent=Msa0193120-mRNA-1
chr2_1 CDS 8943326 8943374 8943326 ID=Msa0193120-mRNA-1:cds;Parent=Msa0193120-mRNA-1
chr2_1 CDS 8943455 8943631 8943455 ID=Msa0193120-mRNA-1:cds;Parent=Msa0193120-mRNA-1
chr2_1 three_prime_UTR 8943632 8944084 8943632 ID=Msa0193120-mRNA-1:three_prime_utr;Parent=Msa0193120-mRNA-1
Gene Sequence

>Msa0193120

ATGGATCTTGAAAGGCTAAAAGATCTGGTTCGGATTGTTGGAAAAGAAAGGCTTGTGTTGGATCTCAGTTGCAGAAAAAAGGAAGGTAAATATGCAATCGTCACTGATAGATGGCAGAAGTTCAGTGATGTGTCACTTGATGCCAAAGTAATGGAGTTTCTTGCCAACTTTGCTGATGAGTTTCTGGTTCATGGCGTTGATGTTGAAGGAAAGAAGTTGGGAATTGATGAAGAGCTTGTAGCTCTGCTTGGAAAGCACTCACCGATTCCTGTGACATATGCTGGTGGTGTGACAGTAATGGACGATTTGGAGAGGATAAAAACATCTGGAATGGATAATGTGGATGTTACTGTTGGCAGTGCCTTGGACATTTTTGGGGGGAATTTGGCTTATAAAGATGTTGTAGCTTGGCATAACCAGCAAAAAGTCTCTGTGGCTTAA

Protein sequence

>Msa0193120

MDLERLKDLVRIVGKERLVLDLSCRKKEGKYAIVTDRWQKFSDVSLDAKVMEFLANFADEFLVHGVDVEGKKLGIDEELVALLGKHSPIPVTYAGGVTVMDDLERIKTSGMDNVDVTVGSALDIFGGNLAYKDVVAWHNQQKVSVA*