Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019010 | XP_003624128.2 | 56.000 | 125 | 50 | 1 | 19 | 143 | 138 | 257 | 1.23e-35 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019010 | sp|Q84VZ1|FHY1C_ARATH | 33.333 | 135 | 85 | 1 | 5 | 139 | 113 | 242 | 9.63e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019010 | G7KQL8 | 56.000 | 125 | 50 | 1 | 19 | 143 | 138 | 257 | 5.89e-36 | 134 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1019010 | 0.801149 | 1.032003e-48 | -8.615850e-47 |
| Msa0056450 | Msa1019010 | 0.812626 | 3.857322e-51 | -8.615850e-47 |
| Msa0661320 | Msa1019010 | 0.808250 | 3.396617e-50 | -8.615850e-47 |
| Msa0676760 | Msa1019010 | 0.801419 | 9.083337e-49 | -8.615850e-47 |
| Msa0743730 | Msa1019010 | 0.810554 | 1.088229e-50 | -8.615850e-47 |
| Msa0178510 | Msa1019010 | 0.801647 | 8.158337e-49 | -8.615850e-47 |
| Msa0207350 | Msa1019010 | 0.800853 | 1.185817e-48 | -8.615850e-47 |
| Msa0218810 | Msa1019010 | 0.807665 | 4.524129e-50 | -8.615850e-47 |
| Msa0436370 | Msa1019010 | 0.802662 | 5.043551e-49 | -8.615850e-47 |
| Msa0468410 | Msa1019010 | 0.809188 | 2.141176e-50 | -8.615850e-47 |
| Msa1010070 | Msa1019010 | 0.800858 | 1.183311e-48 | -8.615850e-47 |
| Msa1019010 | Msa1019130 | 0.809399 | 1.929398e-50 | -8.615850e-47 |
| Msa1019010 | Msa1050740 | 0.800206 | 1.606418e-48 | -8.615850e-47 |
| Msa1019010 | Msa1098270 | 0.803438 | 3.485227e-49 | -8.615850e-47 |
| Msa1019010 | Msa1139890 | 0.808097 | 3.661128e-50 | -8.615850e-47 |
| Msa1019010 | Msa1147770 | 0.844382 | 7.824405e-59 | -8.615850e-47 |
| Msa1019010 | Msa1167200 | 0.824915 | 6.231760e-54 | -8.615850e-47 |
| Msa1019010 | Msa1297290 | 0.808197 | 3.486151e-50 | -8.615850e-47 |
| Msa1019010 | Msa1353470 | 0.800519 | 1.387227e-48 | -8.615850e-47 |
| Msa1019010 | Msa1379850 | 0.803692 | 3.088126e-49 | -8.615850e-47 |
| Msa1019010 | Msa1385000 | 0.807812 | 4.209905e-50 | -8.615850e-47 |
| Msa1019010 | Msa1397700 | 0.832415 | 9.576369e-56 | -8.615850e-47 |
| Msa1019010 | Msa1408620 | -0.823382 | 1.427656e-53 | -8.615850e-47 |
| Msa0866410 | Msa1019010 | 0.801094 | 1.058751e-48 | -8.615850e-47 |
| Msa0868160 | Msa1019010 | 0.812027 | 5.211381e-51 | -8.615850e-47 |
| Msa0900620 | Msa1019010 | 0.815328 | 9.780463e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019010 | MtrunA17_Chr7g0249081 | 56.000 | 125 | 50 | 1 | 19 | 143 | 138 | 257 | 1.13e-39 | 134 |
| Msa1019010 | MtrunA17_Chr1g0203361 | 75.000 | 76 | 18 | 1 | 1 | 76 | 718 | 792 | 2.43e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019010 | AT1G79790.1 | 33.333 | 135 | 85 | 1 | 5 | 139 | 113 | 242 | 9.79e-20 | 82.4 |
| Msa1019010 | AT1G79790.4 | 41.053 | 95 | 51 | 1 | 45 | 139 | 59 | 148 | 4.96e-19 | 78.2 |
| Msa1019010 | AT1G79790.2 | 41.053 | 95 | 51 | 1 | 45 | 139 | 178 | 267 | 6.60e-18 | 77.8 |
Find 21 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATAGTTATTGTCTTCAT+AGG | 0.296702 | 7_1:-40147083 | Msa1019010:intron |
| CTCATTGTGTTTCAAGAAAG+AGG | 0.321623 | 7_1:-40147461 | Msa1019010:CDS |
| CGCGAAGAACTGTCATTGTT+GGG | 0.354663 | 7_1:-40146991 | Msa1019010:CDS |
| TCCTCATAGAATTCAGTATC+CGG | 0.447494 | 7_1:+40147435 | None:intergenic |
| GCGCGAAGAACTGTCATTGT+TGG | 0.454550 | 7_1:-40146992 | Msa1019010:CDS |
| GTGGAGGCAGCAGCTGAAGT+TGG | 0.459723 | 7_1:-40147051 | Msa1019010:CDS |
| AGCAGCTGAAGTTGGGATCA+AGG | 0.474632 | 7_1:-40147043 | Msa1019010:CDS |
| TGGAGGCAGCAGCTGAAGTT+GGG | 0.474813 | 7_1:-40147050 | Msa1019010:CDS |
| AGAAGCAGAATTAAATGCTA+TGG | 0.479810 | 7_1:-40148210 | Msa1019010:CDS |
| GTCAAAATCAGAAATGCATA+AGG | 0.483727 | 7_1:-40148105 | Msa1019010:CDS |
| AGCTGCCTCATTGTCTCTTG+AGG | 0.501894 | 7_1:+40148145 | None:intergenic |
| TGTTTCAAGAAAGAGGAAAC+CGG | 0.511148 | 7_1:-40147454 | Msa1019010:CDS |
| AATGCATAAGGTAATTGCTC+AGG | 0.523450 | 7_1:-40148093 | Msa1019010:intron |
| TATATCTCAATTAGAAGAAG+AGG | 0.523544 | 7_1:-40148243 | Msa1019010:CDS |
| AAGAGACAATGAGGCAGCTA+AGG | 0.534926 | 7_1:-40148141 | Msa1019010:CDS |
| ACCGGATACTGAATTCTATG+AGG | 0.572307 | 7_1:-40147436 | Msa1019010:CDS |
| CTCAAGAATAACAAAGGACG+AGG | 0.579104 | 7_1:-40148179 | Msa1019010:CDS |
| GCGAAGAACTGTCATTGTTG+GGG | 0.610758 | 7_1:-40146990 | Msa1019010:CDS |
| AAGAAGCTCAAGAATAACAA+AGG | 0.616117 | 7_1:-40148185 | Msa1019010:CDS |
| TATGACCTCAAGAGACAATG+AGG | 0.680939 | 7_1:-40148150 | Msa1019010:CDS |
| AATTCTATGAGGAAGTTGTG+AGG | 0.684361 | 7_1:-40147425 | Msa1019010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTATAAGTGATATCA+TGG | + | chr7_1:40147902-40147921 | None:intergenic | 15.0% |
| !! | ATAAATTATAAGTGATATCA+TGG | + | chr7_1:40147902-40147921 | None:intergenic | 15.0% |
| !! | TTGATATCTGATAATAAGTA+TGG | + | chr7_1:40147151-40147170 | None:intergenic | 20.0% |
| !!! | CTCAAAGTTATTTTTCTTTA+AGG | + | chr7_1:40147390-40147409 | None:intergenic | 20.0% |
| !! | TGATATTATCTACATTCTAA+TGG | - | chr7_1:40147648-40147667 | Msa1019010:intron | 20.0% |
| !! | CAAAAAAACTTATCATTTGA+GGG | - | chr7_1:40147673-40147692 | Msa1019010:intron | 20.0% |
| !! | GAATGTATCTACAATATATA+AGG | + | chr7_1:40147734-40147753 | None:intergenic | 20.0% |
| !!! | CTTTGCTTCTATTTTTTAAT+AGG | + | chr7_1:40148040-40148059 | None:intergenic | 20.0% |
| !! | TATATAGTTATTGTCTTCAT+AGG | - | chr7_1:40148131-40148150 | Msa1019010:CDS | 20.0% |
| !! | TTGATATCTGATAATAAGTA+TGG | + | chr7_1:40147151-40147170 | None:intergenic | 20.0% |
| !!! | CTCAAAGTTATTTTTCTTTA+AGG | + | chr7_1:40147390-40147409 | None:intergenic | 20.0% |
| !! | TGATATTATCTACATTCTAA+TGG | - | chr7_1:40147648-40147667 | Msa1019010:intron | 20.0% |
| !! | CAAAAAAACTTATCATTTGA+GGG | - | chr7_1:40147673-40147692 | Msa1019010:intron | 20.0% |
| !! | GAATGTATCTACAATATATA+AGG | + | chr7_1:40147734-40147753 | None:intergenic | 20.0% |
| !!! | CTTTGCTTCTATTTTTTAAT+AGG | + | chr7_1:40148040-40148059 | None:intergenic | 20.0% |
| !! | TATATAGTTATTGTCTTCAT+AGG | - | chr7_1:40148131-40148150 | Msa1019010:CDS | 20.0% |
| ! | TATATCTCAATTAGAAGAAG+AGG | - | chr7_1:40146971-40146990 | Msa1019010:CDS | 25.0% |
| ! | GAACATACTTATTGCATATT+AGG | - | chr7_1:40147171-40147190 | Msa1019010:intron | 25.0% |
| ! | ACATTGATGAGTTTATTATG+TGG | - | chr7_1:40147214-40147233 | Msa1019010:intron | 25.0% |
| ! | TTAAAACTTGTATGAGACAT+GGG | - | chr7_1:40147327-40147346 | Msa1019010:intron | 25.0% |
| !! | CTTTTACTAACTATCCTATA+TGG | - | chr7_1:40147417-40147436 | Msa1019010:CDS | 25.0% |
| !!! | CCTCAAATGATAAGTTTTTT+TGG | + | chr7_1:40147675-40147694 | None:intergenic | 25.0% |
| ! | CCAAAAAAACTTATCATTTG+AGG | - | chr7_1:40147672-40147691 | Msa1019010:intron | 25.0% |
| !! | ATTGTATTTTCATAGATGAC+AGG | - | chr7_1:40147834-40147853 | Msa1019010:intron | 25.0% |
| !! | TTTTAATAGGCAAATGTTAG+TGG | + | chr7_1:40148027-40148046 | None:intergenic | 25.0% |
| ! | GAAGCAAAGTTCAATTTATT+TGG | - | chr7_1:40148051-40148070 | Msa1019010:intron | 25.0% |
| ! | TATATCTCAATTAGAAGAAG+AGG | - | chr7_1:40146971-40146990 | Msa1019010:CDS | 25.0% |
| ! | GAACATACTTATTGCATATT+AGG | - | chr7_1:40147171-40147190 | Msa1019010:intron | 25.0% |
| ! | ACATTGATGAGTTTATTATG+TGG | - | chr7_1:40147214-40147233 | Msa1019010:intron | 25.0% |
| ! | TTAAAACTTGTATGAGACAT+GGG | - | chr7_1:40147327-40147346 | Msa1019010:intron | 25.0% |
| !! | CTTTTACTAACTATCCTATA+TGG | - | chr7_1:40147417-40147436 | Msa1019010:CDS | 25.0% |
| !!! | CCTCAAATGATAAGTTTTTT+TGG | + | chr7_1:40147675-40147694 | None:intergenic | 25.0% |
| ! | CCAAAAAAACTTATCATTTG+AGG | - | chr7_1:40147672-40147691 | Msa1019010:intron | 25.0% |
| !! | ATTGTATTTTCATAGATGAC+AGG | - | chr7_1:40147834-40147853 | Msa1019010:intron | 25.0% |
| !! | TTTTAATAGGCAAATGTTAG+TGG | + | chr7_1:40148027-40148046 | None:intergenic | 25.0% |
| ! | GAAGCAAAGTTCAATTTATT+TGG | - | chr7_1:40148051-40148070 | Msa1019010:intron | 25.0% |
| AGAAGCAGAATTAAATGCTA+TGG | - | chr7_1:40147004-40147023 | Msa1019010:CDS | 30.0% | |
| AAGAAGCTCAAGAATAACAA+AGG | - | chr7_1:40147029-40147048 | Msa1019010:CDS | 30.0% | |
| GTCAAAATCAGAAATGCATA+AGG | - | chr7_1:40147109-40147128 | Msa1019010:intron | 30.0% | |
| TACTTATTGCATATTAGGAC+AGG | - | chr7_1:40147176-40147195 | Msa1019010:intron | 30.0% | |
| ACATATGATCTTTAACTGTC+AGG | - | chr7_1:40147261-40147280 | Msa1019010:intron | 30.0% | |
| ! | TGTTCTTCTTTTTCTTTGAC+AGG | - | chr7_1:40147302-40147321 | Msa1019010:intron | 30.0% |
| ! | CATGTCTCATACAAGTTTTA+AGG | + | chr7_1:40147328-40147347 | None:intergenic | 30.0% |
| CTTAAAACTTGTATGAGACA+TGG | - | chr7_1:40147326-40147345 | Msa1019010:intron | 30.0% | |
| TATCCTATATGGTAAGACAA+TGG | - | chr7_1:40147428-40147447 | Msa1019010:CDS | 30.0% | |
| AATCCATTGTCTTACCATAT+AGG | + | chr7_1:40147434-40147453 | None:intergenic | 30.0% | |
| TTGAAATTGTAAGTACCAGT+TGG | - | chr7_1:40147507-40147526 | Msa1019010:intron | 30.0% | |
| AGATTTGTATGCAATACTGA+AGG | - | chr7_1:40147938-40147957 | Msa1019010:intron | 30.0% | |
| AGAAGCAGAATTAAATGCTA+TGG | - | chr7_1:40147004-40147023 | Msa1019010:CDS | 30.0% | |
| AAGAAGCTCAAGAATAACAA+AGG | - | chr7_1:40147029-40147048 | Msa1019010:CDS | 30.0% | |
| GTCAAAATCAGAAATGCATA+AGG | - | chr7_1:40147109-40147128 | Msa1019010:intron | 30.0% | |
| TACTTATTGCATATTAGGAC+AGG | - | chr7_1:40147176-40147195 | Msa1019010:intron | 30.0% | |
| ACATATGATCTTTAACTGTC+AGG | - | chr7_1:40147261-40147280 | Msa1019010:intron | 30.0% | |
| ! | TGTTCTTCTTTTTCTTTGAC+AGG | - | chr7_1:40147302-40147321 | Msa1019010:intron | 30.0% |
| ! | CATGTCTCATACAAGTTTTA+AGG | + | chr7_1:40147328-40147347 | None:intergenic | 30.0% |
| CTTAAAACTTGTATGAGACA+TGG | - | chr7_1:40147326-40147345 | Msa1019010:intron | 30.0% | |
| TATCCTATATGGTAAGACAA+TGG | - | chr7_1:40147428-40147447 | Msa1019010:CDS | 30.0% | |
| AATCCATTGTCTTACCATAT+AGG | + | chr7_1:40147434-40147453 | None:intergenic | 30.0% | |
| TTGAAATTGTAAGTACCAGT+TGG | - | chr7_1:40147507-40147526 | Msa1019010:intron | 30.0% | |
| AGATTTGTATGCAATACTGA+AGG | - | chr7_1:40147938-40147957 | Msa1019010:intron | 30.0% | |
| AATGCATAAGGTAATTGCTC+AGG | - | chr7_1:40147121-40147140 | Msa1019010:intron | 35.0% | |
| GCATATTAGGACAGGTTAAA+TGG | - | chr7_1:40147184-40147203 | Msa1019010:intron | 35.0% | |
| CATGGGTATTCATACATAGA+AGG | - | chr7_1:40147344-40147363 | Msa1019010:intron | 35.0% | |
| CAAAAAGATGATCGACACAA+AGG | + | chr7_1:40147620-40147639 | None:intergenic | 35.0% | |
| !! | TGTGTCGATCATCTTTTTGT+TGG | - | chr7_1:40147621-40147640 | Msa1019010:intron | 35.0% |
| CTCATTGTGTTTCAAGAAAG+AGG | - | chr7_1:40147753-40147772 | Msa1019010:intron | 35.0% | |
| TGTTTCAAGAAAGAGGAAAC+CGG | - | chr7_1:40147760-40147779 | Msa1019010:intron | 35.0% | |
| TCCTCATAGAATTCAGTATC+CGG | + | chr7_1:40147782-40147801 | None:intergenic | 35.0% | |
| AATTCTATGAGGAAGTTGTG+AGG | - | chr7_1:40147789-40147808 | Msa1019010:intron | 35.0% | |
| !! | GCAATACTGAAGGAGTATTA+AGG | - | chr7_1:40147948-40147967 | Msa1019010:intron | 35.0% |
| !! | ATACTGAAGGAGTATTAAGG+AGG | - | chr7_1:40147951-40147970 | Msa1019010:intron | 35.0% |
| !! | AAGGAGTATTAAGGAGGTTT+AGG | - | chr7_1:40147957-40147976 | Msa1019010:intron | 35.0% |
| !! | AGGAGTATTAAGGAGGTTTA+GGG | - | chr7_1:40147958-40147977 | Msa1019010:intron | 35.0% |
| !! | TGTTAGTGGATGGTTTGTTA+GGG | + | chr7_1:40148013-40148032 | None:intergenic | 35.0% |
| !! | ATGTTAGTGGATGGTTTGTT+AGG | + | chr7_1:40148014-40148033 | None:intergenic | 35.0% |
| AATAGGCAAATGTTAGTGGA+TGG | + | chr7_1:40148023-40148042 | None:intergenic | 35.0% | |
| CTACTTCAACTTCAACTGTT+TGG | + | chr7_1:40148089-40148108 | None:intergenic | 35.0% | |
| TCTTCATAGGCCAAAAAATG+TGG | - | chr7_1:40148144-40148163 | Msa1019010:CDS | 35.0% | |
| AATGCATAAGGTAATTGCTC+AGG | - | chr7_1:40147121-40147140 | Msa1019010:intron | 35.0% | |
| GCATATTAGGACAGGTTAAA+TGG | - | chr7_1:40147184-40147203 | Msa1019010:intron | 35.0% | |
| CATGGGTATTCATACATAGA+AGG | - | chr7_1:40147344-40147363 | Msa1019010:intron | 35.0% | |
| CAAAAAGATGATCGACACAA+AGG | + | chr7_1:40147620-40147639 | None:intergenic | 35.0% | |
| !! | TGTGTCGATCATCTTTTTGT+TGG | - | chr7_1:40147621-40147640 | Msa1019010:intron | 35.0% |
| CTCATTGTGTTTCAAGAAAG+AGG | - | chr7_1:40147753-40147772 | Msa1019010:intron | 35.0% | |
| TGTTTCAAGAAAGAGGAAAC+CGG | - | chr7_1:40147760-40147779 | Msa1019010:intron | 35.0% | |
| TCCTCATAGAATTCAGTATC+CGG | + | chr7_1:40147782-40147801 | None:intergenic | 35.0% | |
| AATTCTATGAGGAAGTTGTG+AGG | - | chr7_1:40147789-40147808 | Msa1019010:intron | 35.0% | |
| !! | GCAATACTGAAGGAGTATTA+AGG | - | chr7_1:40147948-40147967 | Msa1019010:intron | 35.0% |
| !! | ATACTGAAGGAGTATTAAGG+AGG | - | chr7_1:40147951-40147970 | Msa1019010:intron | 35.0% |
| !! | AAGGAGTATTAAGGAGGTTT+AGG | - | chr7_1:40147957-40147976 | Msa1019010:intron | 35.0% |
| !! | AGGAGTATTAAGGAGGTTTA+GGG | - | chr7_1:40147958-40147977 | Msa1019010:intron | 35.0% |
| !! | TGTTAGTGGATGGTTTGTTA+GGG | + | chr7_1:40148013-40148032 | None:intergenic | 35.0% |
| !! | ATGTTAGTGGATGGTTTGTT+AGG | + | chr7_1:40148014-40148033 | None:intergenic | 35.0% |
| AATAGGCAAATGTTAGTGGA+TGG | + | chr7_1:40148023-40148042 | None:intergenic | 35.0% | |
| CTACTTCAACTTCAACTGTT+TGG | + | chr7_1:40148089-40148108 | None:intergenic | 35.0% | |
| TCTTCATAGGCCAAAAAATG+TGG | - | chr7_1:40148144-40148163 | Msa1019010:CDS | 35.0% | |
| CTCAAGAATAACAAAGGACG+AGG | - | chr7_1:40147035-40147054 | Msa1019010:CDS | 40.0% | |
| TATGACCTCAAGAGACAATG+AGG | - | chr7_1:40147064-40147083 | Msa1019010:CDS | 40.0% | |
| ACCGGATACTGAATTCTATG+AGG | - | chr7_1:40147778-40147797 | Msa1019010:intron | 40.0% | |
| !! | GTTAGTGGATGGTTTGTTAG+GGG | + | chr7_1:40148012-40148031 | None:intergenic | 40.0% |
| TCATAGGCCAAAAAATGTGG+AGG | - | chr7_1:40148147-40148166 | Msa1019010:CDS | 40.0% | |
| CTCAAGAATAACAAAGGACG+AGG | - | chr7_1:40147035-40147054 | Msa1019010:CDS | 40.0% | |
| TATGACCTCAAGAGACAATG+AGG | - | chr7_1:40147064-40147083 | Msa1019010:CDS | 40.0% | |
| ACCGGATACTGAATTCTATG+AGG | - | chr7_1:40147778-40147797 | Msa1019010:intron | 40.0% | |
| !! | GTTAGTGGATGGTTTGTTAG+GGG | + | chr7_1:40148012-40148031 | None:intergenic | 40.0% |
| TCATAGGCCAAAAAATGTGG+AGG | - | chr7_1:40148147-40148166 | Msa1019010:CDS | 40.0% | |
| AAGAGACAATGAGGCAGCTA+AGG | - | chr7_1:40147073-40147092 | Msa1019010:CDS | 45.0% | |
| TTGTAAGTACCAGTTGGTCG+AGG | - | chr7_1:40147513-40147532 | Msa1019010:intron | 45.0% | |
| !! | TTAACTTGTCCTCGACCAAC+TGG | + | chr7_1:40147525-40147544 | None:intergenic | 45.0% |
| !! | ACGTTTTGTTCGTGTGCACT+TGG | - | chr7_1:40147568-40147587 | Msa1019010:intron | 45.0% |
| !! | TGGATGGTTTGTTAGGGGTA+GGG | + | chr7_1:40148007-40148026 | None:intergenic | 45.0% |
| CGCGAAGAACTGTCATTGTT+GGG | - | chr7_1:40148223-40148242 | Msa1019010:CDS | 45.0% | |
| GCGAAGAACTGTCATTGTTG+GGG | - | chr7_1:40148224-40148243 | Msa1019010:CDS | 45.0% | |
| AAGAGACAATGAGGCAGCTA+AGG | - | chr7_1:40147073-40147092 | Msa1019010:CDS | 45.0% | |
| TTGTAAGTACCAGTTGGTCG+AGG | - | chr7_1:40147513-40147532 | Msa1019010:intron | 45.0% | |
| !! | TTAACTTGTCCTCGACCAAC+TGG | + | chr7_1:40147525-40147544 | None:intergenic | 45.0% |
| !! | ACGTTTTGTTCGTGTGCACT+TGG | - | chr7_1:40147568-40147587 | Msa1019010:intron | 45.0% |
| !! | TGGATGGTTTGTTAGGGGTA+GGG | + | chr7_1:40148007-40148026 | None:intergenic | 45.0% |
| CGCGAAGAACTGTCATTGTT+GGG | - | chr7_1:40148223-40148242 | Msa1019010:CDS | 45.0% | |
| GCGAAGAACTGTCATTGTTG+GGG | - | chr7_1:40148224-40148243 | Msa1019010:CDS | 45.0% | |
| AGCTGCCTCATTGTCTCTTG+AGG | + | chr7_1:40147072-40147091 | None:intergenic | 50.0% | |
| ! | ACACAAAGGCGCAGAGAGAA+AGG | + | chr7_1:40147606-40147625 | None:intergenic | 50.0% |
| !! | GTGGATGGTTTGTTAGGGGT+AGG | + | chr7_1:40148008-40148027 | None:intergenic | 50.0% |
| !!! | GCTGCTGCCTCCACATTTTT+TGG | + | chr7_1:40148157-40148176 | None:intergenic | 50.0% |
| AGCAGCTGAAGTTGGGATCA+AGG | - | chr7_1:40148171-40148190 | Msa1019010:CDS | 50.0% | |
| GCGCGAAGAACTGTCATTGT+TGG | - | chr7_1:40148222-40148241 | Msa1019010:CDS | 50.0% | |
| AGCTGCCTCATTGTCTCTTG+AGG | + | chr7_1:40147072-40147091 | None:intergenic | 50.0% | |
| ! | ACACAAAGGCGCAGAGAGAA+AGG | + | chr7_1:40147606-40147625 | None:intergenic | 50.0% |
| !! | GTGGATGGTTTGTTAGGGGT+AGG | + | chr7_1:40148008-40148027 | None:intergenic | 50.0% |
| !!! | GCTGCTGCCTCCACATTTTT+TGG | + | chr7_1:40148157-40148176 | None:intergenic | 50.0% |
| AGCAGCTGAAGTTGGGATCA+AGG | - | chr7_1:40148171-40148190 | Msa1019010:CDS | 50.0% | |
| GCGCGAAGAACTGTCATTGT+TGG | - | chr7_1:40148222-40148241 | Msa1019010:CDS | 50.0% | |
| TGGAGGCAGCAGCTGAAGTT+GGG | - | chr7_1:40148164-40148183 | Msa1019010:CDS | 55.0% | |
| TGGAGGCAGCAGCTGAAGTT+GGG | - | chr7_1:40148164-40148183 | Msa1019010:CDS | 55.0% | |
| GTGGAGGCAGCAGCTGAAGT+TGG | - | chr7_1:40148163-40148182 | Msa1019010:CDS | 60.0% | |
| GTGGAGGCAGCAGCTGAAGT+TGG | - | chr7_1:40148163-40148182 | Msa1019010:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 40146960 | 40148276 | 40146960 | ID=Msa1019010;Name=Msa1019010 |
| chr7_1 | mRNA | 40146960 | 40148276 | 40146960 | ID=Msa1019010-mRNA-1;Parent=Msa1019010;Name=Msa1019010-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|0.66|1|1|3|0|143 |
| chr7_1 | exon | 40148094 | 40148276 | 40148094 | ID=Msa1019010-mRNA-1:exon:7763;Parent=Msa1019010-mRNA-1 |
| chr7_1 | exon | 40147381 | 40147490 | 40147381 | ID=Msa1019010-mRNA-1:exon:7762;Parent=Msa1019010-mRNA-1 |
| chr7_1 | exon | 40146960 | 40147098 | 40146960 | ID=Msa1019010-mRNA-1:exon:7761;Parent=Msa1019010-mRNA-1 |
| chr7_1 | CDS | 40148094 | 40148276 | 40148094 | ID=Msa1019010-mRNA-1:cds;Parent=Msa1019010-mRNA-1 |
| chr7_1 | CDS | 40147381 | 40147490 | 40147381 | ID=Msa1019010-mRNA-1:cds;Parent=Msa1019010-mRNA-1 |
| chr7_1 | CDS | 40146960 | 40147098 | 40146960 | ID=Msa1019010-mRNA-1:cds;Parent=Msa1019010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
