AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0866410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866410 MtrunA17_Chr5g0427491 98.830 171 1 1 1 170 1 171 2.67e-122 341
Msa0866410 MtrunA17_Chr3g0132871 58.427 178 61 7 1 170 1 173 1.55e-54 170
Msa0866410 MtrunA17_Chr5g0412221 50.000 176 75 8 1 169 1 170 3.39e-42 139
Msa0866410 MtrunA17_Chr8g0367531 50.400 125 52 4 54 169 48 171 4.96e-25 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866410 AT4G38060.3 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0866410 AT4G38060.2 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0866410 AT4G38060.4 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0866410 AT5G65480.1 39.759 83 42 3 85 167 76 150 2.28e-11 59.3

Find 58 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGATGGTGGATGTGTTTC+TGG 0.086811 5_4:+68064523 Msa0866410:CDS
TCACAACAATGTGGTGAAAT+TGG 0.174455 5_4:+68066279 Msa0866410:three_prime_UTR
AAAACTTCTTCAGTTCTAAT+TGG 0.199763 5_4:+68063407 Msa0866410:five_prime_UTR
CCTTGTTATGGAAGAGATTA+TGG 0.254169 5_4:+68064649 Msa0866410:CDS
AATATGATTGGTAAACTTCT+TGG 0.258151 5_4:+68066143 Msa0866410:three_prime_UTR
CCAATCTCTCATGGTGGTTA+TGG 0.284622 5_4:+68064296 Msa0866410:CDS
CAAGAAAGGTGAAGAGAAAA+TGG 0.289877 5_4:+68064443 Msa0866410:CDS
AGAGAAACATGTTTGAAGTT+TGG 0.311863 5_4:+68066307 Msa0866410:three_prime_UTR
TGAAGAGAAAATGGAATAGT+AGG 0.316249 5_4:+68064452 Msa0866410:CDS
AAGAGAGGAGGAAAGTAGAT+AGG 0.329784 5_4:+68064476 Msa0866410:CDS
ACAATATACAAATTATTTGT+TGG 0.340337 5_4:-68066070 None:intergenic
ATATATGTCTATATGCGTTT+TGG 0.344168 5_4:+68066458 Msa0866410:three_prime_UTR
GATGATTCTGATTGGTCAAT+TGG 0.351802 5_4:+68064556 Msa0866410:CDS
GCAAGAAATATGTGGAAAAC+TGG 0.361128 5_4:+68065964 Msa0866410:CDS
TGACAATGTCTTCTCCTCAT+AGG 0.363084 5_4:-68066179 None:intergenic
TGAGGTAATGAGATTTCCTT+TGG 0.393984 5_4:+68064396 Msa0866410:CDS
CACAACAATGTGGTGAAATT+GGG 0.398333 5_4:+68066280 Msa0866410:three_prime_UTR
GCAGTGTTGGTTCCTTGTTA+TGG 0.406723 5_4:+68064637 Msa0866410:CDS
AGAGAGGAGGAAAGTAGATA+GGG 0.446591 5_4:+68064477 Msa0866410:CDS
CAAGAACCAAGAATCTCAAA+AGG 0.446650 5_4:+68064331 Msa0866410:CDS
CTGAATCTGATGATTCTGAT+TGG 0.451942 5_4:+68064548 Msa0866410:CDS
GTTGTTCTTGTTCCATCTGA+TGG 0.452438 5_4:+68064508 Msa0866410:CDS
GAAGAGAAAATGGAATAGTA+GGG 0.469666 5_4:+68064453 Msa0866410:CDS
CCTATGTTTGCTTGCACCAA+AGG 0.474081 5_4:-68064412 None:intergenic
CCATAACCACCATGAGAGAT+TGG 0.475688 5_4:-68064296 None:intergenic
ATGATGAAGATTAGTGTGTC+AGG 0.476847 5_4:-68066006 None:intergenic
CATAGGTTCTTCATCAAGAA+AGG 0.477610 5_4:+68064429 Msa0866410:CDS
TTCAACAGATTTGAACATGT+TGG 0.479485 5_4:+68064369 Msa0866410:CDS
TGATTGGTCAATTGGATGGT+TGG 0.487254 5_4:+68064564 Msa0866410:CDS
CCTTTGGTGCAAGCAAACAT+AGG 0.507225 5_4:+68064412 Msa0866410:CDS
AATGGAATAGTAGGGAAGAG+AGG 0.508759 5_4:+68064461 Msa0866410:CDS
ACTAAAAGCAACTTACTCAA+TGG 0.523253 5_4:+68064688 Msa0866410:CDS
TTATCAGTTTCATCATCACT+TGG 0.530693 5_4:-68064607 None:intergenic
AGCAACTTACTCAATGGTGT+TGG 0.531403 5_4:+68064694 Msa0866410:CDS
GATAATAATTGAAACCTATG+AGG 0.531958 5_4:+68066165 Msa0866410:three_prime_UTR
ATTGGATGGTTGGAACCTCA+TGG 0.532027 5_4:+68064574 Msa0866410:CDS
TGTCAAGAATAAAGCAATTG+TGG 0.541510 5_4:+68066197 Msa0866410:three_prime_UTR
TTTGAACATGTTGGAATCTG+AGG 0.545709 5_4:+68064378 Msa0866410:CDS
GTTATGGAAGAGATTATGGT+AGG 0.547954 5_4:+68064653 Msa0866410:CDS
ATTCTGATTGGTCAATTGGA+TGG 0.551491 5_4:+68064560 Msa0866410:CDS
CTCTCATGGTGGTTATGGAG+TGG 0.566656 5_4:+68064301 Msa0866410:CDS
CCATAATCTCTTCCATAACA+AGG 0.570281 5_4:-68064649 None:intergenic
GATGTGATGTCAAATATGAT+TGG 0.573394 5_4:+68066131 Msa0866410:three_prime_UTR
TGGCATTCACCAATCTCTCA+TGG 0.573580 5_4:+68064287 Msa0866410:CDS
TGGTTGGAACCTCATGGACC+TGG 0.574553 5_4:+68064580 Msa0866410:CDS
ATTTGTTGGCTTAAGATCAG+AGG 0.574843 5_4:-68066056 None:intergenic
AGATTATGGTAGGATTGAAG+AGG 0.576412 5_4:+68064663 Msa0866410:CDS
AAGAACCAAGAATCTCAAAA+GGG 0.581798 5_4:+68064332 Msa0866410:CDS
GAAACACATCCACCATCAGA+TGG 0.587498 5_4:-68064520 None:intergenic
TGCAGAAAGCAAGAAATATG+TGG 0.588632 5_4:+68065956 Msa0866410:intron
TCATCATCACTTGGAAAACC+AGG 0.594451 5_4:-68064598 None:intergenic
GTTCTTGTTCCATCTGATGG+TGG 0.597431 5_4:+68064511 Msa0866410:CDS
GGAATAGTAGGGAAGAGAGG+AGG 0.604239 5_4:+68064464 Msa0866410:CDS
AATTCGACGTAAATAAATGT+CGG 0.636507 5_4:+68064264 Msa0866410:exon
CTTGGAAAACCAGGTCCATG+AGG 0.659242 5_4:-68064589 None:intergenic
TCGACGTAAATAAATGTCGG+TGG 0.661450 5_4:+68064267 Msa0866410:exon
CATTCACCAATCTCTCATGG+TGG 0.721722 5_4:+68064290 Msa0866410:CDS
CTTTGAGAATCACAACAATG+TGG 0.751456 5_4:+68066270 Msa0866410:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATTTGTTTTTTAATTTT+TGG + chr5_4:68063652-68063671 Msa0866410:intron 10.0%
!!! ATTAAATTTTTTGTAATTTC+AGG + chr5_4:68065043-68065062 Msa0866410:intron 10.0%
!!! TTAAATTTTTTGTAATTTCA+GGG + chr5_4:68065044-68065063 Msa0866410:intron 10.0%
!! AATACAAAAACATAATTAAG+GGG - chr5_4:68063825-68063844 None:intergenic 15.0%
!! CAATACAAAAACATAATTAA+GGG - chr5_4:68063826-68063845 None:intergenic 15.0%
!! TCAATACAAAAACATAATTA+AGG - chr5_4:68063827-68063846 None:intergenic 15.0%
!! TAAGTGTTCATTTATAAAAT+AGG - chr5_4:68065533-68065552 None:intergenic 15.0%
!! ACAATATACAAATTATTTGT+TGG - chr5_4:68066073-68066092 None:intergenic 15.0%
!!! ATATTTTTAGAAACTTTCTC+AGG + chr5_4:68063433-68063452 Msa0866410:five_prime_UTR 20.0%
!!! AGGTTATTTTGTACTTTTTA+AGG + chr5_4:68063453-68063472 Msa0866410:five_prime_UTR 20.0%
!!! TATTTTATCATTTTAGCTTC+TGG + chr5_4:68063580-68063599 Msa0866410:intron 20.0%
!!! ATTTTATCATTTTAGCTTCT+GGG + chr5_4:68063581-68063600 Msa0866410:intron 20.0%
!!! GTTTTTGTTTTCCTATTTTA+AGG + chr5_4:68063786-68063805 Msa0866410:intron 20.0%
!! GATTAAAATCAGAAAATGTT+TGG - chr5_4:68064090-68064109 None:intergenic 20.0%
!!! TTTTTAGATAGTTATTCTGA+TGG + chr5_4:68064721-68064740 Msa0866410:CDS 20.0%
!! TATAATATGAATGCTTGAAT+TGG + chr5_4:68064829-68064848 Msa0866410:intron 20.0%
!! TTAGAATATCAATAATGTGA+AGG + chr5_4:68065073-68065092 Msa0866410:intron 20.0%
!!! TTTCTCATCTGTTTTTTTAT+AGG + chr5_4:68065367-68065386 Msa0866410:intron 20.0%
!!! TTTTTATAGGAATATGTTAG+TGG + chr5_4:68065380-68065399 Msa0866410:intron 20.0%
!!! TGTCATTTAAACATAATTGA+GGG - chr5_4:68065588-68065607 None:intergenic 20.0%
!!! GCTATCATTCTATTAATTTT+AGG - chr5_4:68065730-68065749 None:intergenic 20.0%
!!! CAAGATTTTCAAATTCATAT+TGG - chr5_4:68065828-68065847 None:intergenic 20.0%
!!! TTCAGATTTTATTTTTCTTC+TGG + chr5_4:68065894-68065913 Msa0866410:intron 20.0%
!! AAAACTTCTTCAGTTCTAAT+TGG + chr5_4:68063407-68063426 Msa0866410:five_prime_UTR 25.0%
! ATTCATGAACTTCTATTTCA+AGG - chr5_4:68063534-68063553 None:intergenic 25.0%
!! TTGAGTTAAATTGTTAGCTT+AGG + chr5_4:68063704-68063723 Msa0866410:intron 25.0%
! AAAAAGGACAACCTTAAAAT+AGG - chr5_4:68063800-68063819 None:intergenic 25.0%
! ACATAATTAAGGGGAAAAAA+AGG - chr5_4:68063816-68063835 None:intergenic 25.0%
! TATTGATCATGTGACAAATT+GGG + chr5_4:68063841-68063860 Msa0866410:intron 25.0%
!!! GTTTTTAGTTATCTGAATTG+TGG + chr5_4:68063863-68063882 Msa0866410:intron 25.0%
!! TGTACTTAGAACTAATGTTT+TGG + chr5_4:68063915-68063934 Msa0866410:intron 25.0%
!! GTACTTAGAACTAATGTTTT+GGG + chr5_4:68063916-68063935 Msa0866410:intron 25.0%
!! ATGTATATTGCACAATTTTC+AGG + chr5_4:68063965-68063984 Msa0866410:intron 25.0%
! AAGAACAAAAGTTAGTAACA+AGG - chr5_4:68064222-68064241 None:intergenic 25.0%
! AATTCGACGTAAATAAATGT+CGG + chr5_4:68064264-68064283 Msa0866410:exon 25.0%
! ATTGGAGTAAATACTCAAAT+TGG + chr5_4:68064847-68064866 Msa0866410:intron 25.0%
!! ATTTTGTAATACTGACAATG+TGG - chr5_4:68064899-68064918 None:intergenic 25.0%
!! AACAACATTTTGCAATTTCA+TGG - chr5_4:68064925-68064944 None:intergenic 25.0%
! AAATTGGTCACTAAAATTGT+AGG - chr5_4:68065115-68065134 None:intergenic 25.0%
!!! TATGTTAGTGGTTAATTTGT+CGG + chr5_4:68065392-68065411 Msa0866410:intron 25.0%
! GTCATTTAAACATAATTGAG+GGG - chr5_4:68065587-68065606 None:intergenic 25.0%
!!! GTGTCATTTAAACATAATTG+AGG - chr5_4:68065589-68065608 None:intergenic 25.0%
!! AAATTTAACTTACATCCATG+AGG - chr5_4:68065705-68065724 None:intergenic 25.0%
! TTGTGCATATGATAATTATG+TGG + chr5_4:68065868-68065887 Msa0866410:intron 25.0%
! AATATGATTGGTAAACTTCT+TGG + chr5_4:68066143-68066162 Msa0866410:three_prime_UTR 25.0%
! GATAATAATTGAAACCTATG+AGG + chr5_4:68066165-68066184 Msa0866410:three_prime_UTR 25.0%
!! ATATATGTCTATATGCGTTT+TGG + chr5_4:68066458-68066477 Msa0866410:three_prime_UTR 25.0%
! GTATTGATCATGTGACAAAT+TGG + chr5_4:68063840-68063859 Msa0866410:intron 30.0%
!!! TAGAACTAATGTTTTGGGTT+TGG + chr5_4:68063921-68063940 Msa0866410:intron 30.0%
!!! TAATGTTTTGGGTTTGGTTT+TGG + chr5_4:68063927-68063946 Msa0866410:intron 30.0%
!!! AATGTTTTGGGTTTGGTTTT+GGG + chr5_4:68063928-68063947 Msa0866410:intron 30.0%
! CTTGAACTAAAAGCACAAAA+AGG - chr5_4:68064060-68064079 None:intergenic 30.0%
! TAACTTTTGTTCTTCTCAAC+AGG + chr5_4:68064228-68064247 Msa0866410:intron 30.0%
AAGAACCAAGAATCTCAAAA+GGG + chr5_4:68064332-68064351 Msa0866410:CDS 30.0%
TTCAACAGATTTGAACATGT+TGG + chr5_4:68064369-68064388 Msa0866410:CDS 30.0%
TGAAGAGAAAATGGAATAGT+AGG + chr5_4:68064452-68064471 Msa0866410:CDS 30.0%
GAAGAGAAAATGGAATAGTA+GGG + chr5_4:68064453-68064472 Msa0866410:CDS 30.0%
TTATCAGTTTCATCATCACT+TGG - chr5_4:68064610-68064629 None:intergenic 30.0%
!! TGATAATAGTTTTGCAGTGT+TGG + chr5_4:68064624-68064643 Msa0866410:CDS 30.0%
ACTAAAAGCAACTTACTCAA+TGG + chr5_4:68064688-68064707 Msa0866410:CDS 30.0%
!! TTGCAAAATGTTGTTTCAGT+TGG + chr5_4:68064930-68064949 Msa0866410:intron 30.0%
ATTTAATCAAATTCGTCCCT+TGG - chr5_4:68065030-68065049 None:intergenic 30.0%
AAGCGAGTAAATGCTAAAAT+TGG - chr5_4:68065131-68065150 None:intergenic 30.0%
!! ATGTTAGTGGTTAATTTGTC+GGG + chr5_4:68065393-68065412 Msa0866410:intron 30.0%
!! TTGAAGGAGTATTATGAAAG+AGG - chr5_4:68065459-68065478 None:intergenic 30.0%
AGTGTCTTTAACATAATCGA+GGG + chr5_4:68065656-68065675 Msa0866410:intron 30.0%
TTTGAAAATCTTGCTGCATT+TGG + chr5_4:68065835-68065854 Msa0866410:intron 30.0%
TTCTGCAACAACAACAAAAA+AGG - chr5_4:68065943-68065962 None:intergenic 30.0%
! GGATTTTGTCATTAAGATAC+AGG - chr5_4:68066038-68066057 None:intergenic 30.0%
! AAAAAAAAAAGAGAGAGCAC+TGG + chr5_4:68066103-68066122 Msa0866410:three_prime_UTR 30.0%
GATGTGATGTCAAATATGAT+TGG + chr5_4:68066131-68066150 Msa0866410:three_prime_UTR 30.0%
TGTCAAGAATAAAGCAATTG+TGG + chr5_4:68066197-68066216 Msa0866410:three_prime_UTR 30.0%
! AGAGAAACATGTTTGAAGTT+TGG + chr5_4:68066307-68066326 Msa0866410:three_prime_UTR 30.0%
! TGTTAGCTTAGGATGTGATT+TGG + chr5_4:68063715-68063734 Msa0866410:intron 35.0%
!!! TGTCTGTGTTGGCTATTTTA+AGG + chr5_4:68063759-68063778 Msa0866410:intron 35.0%
!!! GTGTTGGCTATTTTAAGGTT+TGG + chr5_4:68063764-68063783 Msa0866410:intron 35.0%
ATGTTGCAGCACAACAAAAA+GGG - chr5_4:68064129-68064148 None:intergenic 35.0%
CAAGAACCAAGAATCTCAAA+AGG + chr5_4:68064331-68064350 Msa0866410:CDS 35.0%
TTTGAACATGTTGGAATCTG+AGG + chr5_4:68064378-68064397 Msa0866410:CDS 35.0%
TGAGGTAATGAGATTTCCTT+TGG + chr5_4:68064396-68064415 Msa0866410:CDS 35.0%
CATAGGTTCTTCATCAAGAA+AGG + chr5_4:68064429-68064448 Msa0866410:CDS 35.0%
CAAGAAAGGTGAAGAGAAAA+TGG + chr5_4:68064443-68064462 Msa0866410:CDS 35.0%
CTGAATCTGATGATTCTGAT+TGG + chr5_4:68064548-68064567 Msa0866410:CDS 35.0%
! GATGATTCTGATTGGTCAAT+TGG + chr5_4:68064556-68064575 Msa0866410:CDS 35.0%
! ATTCTGATTGGTCAATTGGA+TGG + chr5_4:68064560-68064579 Msa0866410:CDS 35.0%
CCATAATCTCTTCCATAACA+AGG - chr5_4:68064652-68064671 None:intergenic 35.0%
! CCTTGTTATGGAAGAGATTA+TGG + chr5_4:68064649-68064668 Msa0866410:CDS 35.0%
GTTATGGAAGAGATTATGGT+AGG + chr5_4:68064653-68064672 Msa0866410:CDS 35.0%
AGATTATGGTAGGATTGAAG+AGG + chr5_4:68064663-68064682 Msa0866410:CDS 35.0%
TTGTAATACTGACAATGTGG+AGG - chr5_4:68064896-68064915 None:intergenic 35.0%
TAGCATTTACTCGCTTGAAT+TGG + chr5_4:68065135-68065154 Msa0866410:intron 35.0%
AGCATTTACTCGCTTGAATT+GGG + chr5_4:68065136-68065155 Msa0866410:intron 35.0%
! TTGTCTCTGAGTCTTTGTTT+GGG + chr5_4:68065200-68065219 Msa0866410:intron 35.0%
!! TGTTAGTGGTTAATTTGTCG+GGG + chr5_4:68065394-68065413 Msa0866410:intron 35.0%
! TTCATGAAAGTGTAGCCTAA+TGG - chr5_4:68065497-68065516 None:intergenic 35.0%
CAGTGTCTTTAACATAATCG+AGG + chr5_4:68065655-68065674 Msa0866410:intron 35.0%
GTGTCTTTAACATAATCGAG+GGG + chr5_4:68065657-68065676 Msa0866410:intron 35.0%
TGTCTTTAACATAATCGAGG+GGG + chr5_4:68065658-68065677 Msa0866410:intron 35.0%
!! CTCTAGTCTTGAAAGATAGT+AGG + chr5_4:68065760-68065779 Msa0866410:intron 35.0%
TGCAGAAAGCAAGAAATATG+TGG + chr5_4:68065956-68065975 Msa0866410:intron 35.0%
GCAAGAAATATGTGGAAAAC+TGG + chr5_4:68065964-68065983 Msa0866410:CDS 35.0%
ATGATGAAGATTAGTGTGTC+AGG - chr5_4:68066009-68066028 None:intergenic 35.0%
!! ATTTGTTGGCTTAAGATCAG+AGG - chr5_4:68066059-68066078 None:intergenic 35.0%
! CTTTGAGAATCACAACAATG+TGG + chr5_4:68066270-68066289 Msa0866410:three_prime_UTR 35.0%
TCACAACAATGTGGTGAAAT+TGG + chr5_4:68066279-68066298 Msa0866410:three_prime_UTR 35.0%
CACAACAATGTGGTGAAATT+GGG + chr5_4:68066280-68066299 Msa0866410:three_prime_UTR 35.0%
!! AGGATGTGATTTGGTTACCT+TGG + chr5_4:68063724-68063743 Msa0866410:intron 40.0%
!! TGTGATTTGGTTACCTTGGT+AGG + chr5_4:68063728-68063747 Msa0866410:intron 40.0%
TGTTGCAGCACAACAAAAAG+GGG - chr5_4:68064128-68064147 None:intergenic 40.0%
GATGTTGCAGCACAACAAAA+AGG - chr5_4:68064130-68064149 None:intergenic 40.0%
TCGACGTAAATAAATGTCGG+TGG + chr5_4:68064267-68064286 Msa0866410:exon 40.0%
!!! GAAGTCCCTTTTGAGATTCT+TGG - chr5_4:68064340-68064359 None:intergenic 40.0%
AATGGAATAGTAGGGAAGAG+AGG + chr5_4:68064461-68064480 Msa0866410:CDS 40.0%
AAGAGAGGAGGAAAGTAGAT+AGG + chr5_4:68064476-68064495 Msa0866410:CDS 40.0%
AGAGAGGAGGAAAGTAGATA+GGG + chr5_4:68064477-68064496 Msa0866410:CDS 40.0%
GTTGTTCTTGTTCCATCTGA+TGG + chr5_4:68064508-68064527 Msa0866410:CDS 40.0%
! TGATTGGTCAATTGGATGGT+TGG + chr5_4:68064564-68064583 Msa0866410:CDS 40.0%
TCATCATCACTTGGAAAACC+AGG - chr5_4:68064601-68064620 None:intergenic 40.0%
AGCAACTTACTCAATGGTGT+TGG + chr5_4:68064694-68064713 Msa0866410:CDS 40.0%
AATCAAATTCGTCCCTTGGT+TGG - chr5_4:68065026-68065045 None:intergenic 40.0%
GTTGTCTCTGAGTCTTTGTT+TGG + chr5_4:68065199-68065218 Msa0866410:intron 40.0%
ATAAGCATACTTCGATGGAG+TGG - chr5_4:68065339-68065358 None:intergenic 40.0%
GTGCTATAAGCATACTTCGA+TGG - chr5_4:68065344-68065363 None:intergenic 40.0%
AAAGTGTAGCCTAATGGTAC+CGG - chr5_4:68065491-68065510 None:intergenic 40.0%
! GTAGCTTGTAAAAAGCAGAG+GGG - chr5_4:68065617-68065636 None:intergenic 40.0%
! CGTAGCTTGTAAAAAGCAGA+GGG - chr5_4:68065618-68065637 None:intergenic 40.0%
! ACGTAGCTTGTAAAAAGCAG+AGG - chr5_4:68065619-68065638 None:intergenic 40.0%
ACAAGCTACGTATGATTGAG+TGG + chr5_4:68065628-68065647 Msa0866410:intron 40.0%
CATCGTTTAAGCATACCTCA+TGG + chr5_4:68065687-68065706 Msa0866410:intron 40.0%
TGACAATGTCTTCTCCTCAT+AGG - chr5_4:68066182-68066201 None:intergenic 40.0%
TTTGGTTACCTTGGTAGGTG+AGG + chr5_4:68063733-68063752 Msa0866410:intron 45.0%
AGACAAATCCTCACCTACCA+AGG - chr5_4:68063744-68063763 None:intergenic 45.0%
AGGTGAGGATTTGTCTGTGT+TGG + chr5_4:68063748-68063767 Msa0866410:intron 45.0%
TGGCATTCACCAATCTCTCA+TGG + chr5_4:68064287-68064306 Msa0866410:CDS 45.0%
CATTCACCAATCTCTCATGG+TGG + chr5_4:68064290-68064309 Msa0866410:CDS 45.0%
CCATAACCACCATGAGAGAT+TGG - chr5_4:68064299-68064318 None:intergenic 45.0%
CCAATCTCTCATGGTGGTTA+TGG + chr5_4:68064296-68064315 Msa0866410:CDS 45.0%
CCTATGTTTGCTTGCACCAA+AGG - chr5_4:68064415-68064434 None:intergenic 45.0%
! CCTTTGGTGCAAGCAAACAT+AGG + chr5_4:68064412-68064431 Msa0866410:CDS 45.0%
GTTCTTGTTCCATCTGATGG+TGG + chr5_4:68064511-68064530 Msa0866410:CDS 45.0%
GAAACACATCCACCATCAGA+TGG - chr5_4:68064523-68064542 None:intergenic 45.0%
!! TCTGATGGTGGATGTGTTTC+TGG + chr5_4:68064523-68064542 Msa0866410:CDS 45.0%
ATTGGATGGTTGGAACCTCA+TGG + chr5_4:68064574-68064593 Msa0866410:CDS 45.0%
!! GCAGTGTTGGTTCCTTGTTA+TGG + chr5_4:68064637-68064656 Msa0866410:CDS 45.0%
TCCCGATAAGTTCCAACCAA+GGG + chr5_4:68065011-68065030 Msa0866410:intron 45.0%
TCCCTTGGTTGGAACTTATC+GGG - chr5_4:68065015-68065034 None:intergenic 45.0%
GTCCCTTGGTTGGAACTTAT+CGG - chr5_4:68065016-68065035 None:intergenic 45.0%
!! GGTTAATTTGTCGGGGAAAG+AGG + chr5_4:68065401-68065420 Msa0866410:intron 45.0%
AAGTGTAGCCTAATGGTACC+GGG - chr5_4:68065490-68065509 None:intergenic 45.0%
!!! TTTATCTTTTAAAAAAAATT+AGG + chr5_4:68065296-68065315 Msa0866410:intron 5.0%
!!! TTATCTTTTAAAAAAAATTA+GGG + chr5_4:68065297-68065316 Msa0866410:intron 5.0%
CTCTCATGGTGGTTATGGAG+TGG + chr5_4:68064301-68064320 Msa0866410:CDS 50.0%
GGAATAGTAGGGAAGAGAGG+AGG + chr5_4:68064464-68064483 Msa0866410:CDS 50.0%
CTTGGAAAACCAGGTCCATG+AGG - chr5_4:68064592-68064611 None:intergenic 50.0%
GTCCCGATAAGTTCCAACCA+AGG + chr5_4:68065010-68065029 Msa0866410:intron 50.0%
AGCATACTTCGATGGAGTGG+AGG - chr5_4:68065336-68065355 None:intergenic 50.0%
ACTCCTTCAATGTCCCAACC+CGG + chr5_4:68065469-68065488 Msa0866410:intron 50.0%
! TAGCCTAATGGTACCGGGTT+GGG - chr5_4:68065485-68065504 None:intergenic 50.0%
TGGTTGGAACCTCATGGACC+TGG + chr5_4:68064580-68064599 Msa0866410:CDS 55.0%
! GTACCGGGTTGGGACATTGA+AGG - chr5_4:68065475-68065494 None:intergenic 55.0%
TGTCCCAACCCGGTACCATT+AGG + chr5_4:68065479-68065498 Msa0866410:intron 55.0%
! GTAGCCTAATGGTACCGGGT+TGG - chr5_4:68065486-68065505 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 68063322 68066487 68063322 ID=Msa0866410;Name=Msa0866410
chr5_4 mRNA 68063322 68066487 68063322 ID=Msa0866410-mRNA-1;Parent=Msa0866410;Name=Msa0866410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=183|1|1|1|0.5|0.33|3|477|170
chr5_4 exon 68063322 68063474 68063322 ID=Msa0866410-mRNA-1:exon:21517;Parent=Msa0866410-mRNA-1
chr5_4 exon 68064250 68064742 68064250 ID=Msa0866410-mRNA-1:exon:21518;Parent=Msa0866410-mRNA-1
chr5_4 exon 68065961 68066487 68065961 ID=Msa0866410-mRNA-1:exon:21519;Parent=Msa0866410-mRNA-1
chr5_4 five_prime_UTR 68063322 68063474 68063322 ID=Msa0866410-mRNA-1:five_prime_utr;Parent=Msa0866410-mRNA-1
chr5_4 five_prime_UTR 68064250 68064279 68064250 ID=Msa0866410-mRNA-1:five_prime_utr;Parent=Msa0866410-mRNA-1
chr5_4 CDS 68064280 68064742 68064280 ID=Msa0866410-mRNA-1:cds;Parent=Msa0866410-mRNA-1
chr5_4 CDS 68065961 68066010 68065961 ID=Msa0866410-mRNA-1:cds;Parent=Msa0866410-mRNA-1
chr5_4 three_prime_UTR 68066011 68066487 68066011 ID=Msa0866410-mRNA-1:three_prime_utr;Parent=Msa0866410-mRNA-1
Gene Sequence

>Msa0866410

ATGTCGGTGGCATTCACCAATCTCTCATGGTGGTTATGGAGTGGAAAACATCAAGAACCAAGAATCTCAAAAGGGACTTCAATAAATTCTTCAACAGATTTGAACATGTTGGAATCTGAGGTAATGAGATTTCCTTTGGTGCAAGCAAACATAGGTTCTTCATCAAGAAAGGTGAAGAGAAAATGGAATAGTAGGGAAGAGAGGAGGAAAGTAGATAGGGAATATGATGTTGTTCTTGTTCCATCTGATGGTGGATGTGTTTCTGGTTCTGAATCTGATGATTCTGATTGGTCAATTGGATGGTTGGAACCTCATGGACCTGGTTTTCCAAGTGATGATGAAACTGATAATAGTTTTGCAGTGTTGGTTCCTTGTTATGGAAGAGATTATGGTAGGATTGAAGAGGATACTAAAAGCAACTTACTCAATGGTGTTGGACACTTTTTAGATAGTTATTCTGATGAAAGCAAGAAATATGTGGAAAACTGGCTATCTTCTATTCGAAATACCTGA

Protein sequence

>Msa0866410

MSVAFTNLSWWLWSGKHQEPRISKGTSINSSTDLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERRKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVLVPCYGRDYGRIEEDTKSNLLNGVGHFLDSYSDESKKYVENWLSSIRNT*