AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235960 MtrunA17_Chr8g0345941 95.126 636 11 1 1 636 1 616 0.0 1251
Msa1235960 MtrunA17_Chr1g0189131 71.022 597 149 3 41 636 35 608 0.0 857
Msa1235960 MtrunA17_Chr6g0453261 39.319 529 271 11 90 610 267 753 1.92e-112 354
Msa1235960 MtrunA17_Chr3g0126911 38.698 553 271 15 83 608 134 645 2.98e-112 351
Msa1235960 MtrunA17_Chr4g0051911 28.774 563 283 21 89 609 481 967 1.14e-51 192
Msa1235960 MtrunA17_Chr2g0288461 28.962 549 254 19 90 607 658 1101 2.13e-48 182
Msa1235960 MtrunA17_Chr5g0411441 23.593 462 285 18 89 523 190 610 4.53e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235960 AT1G32900.1 68.809 638 169 6 1 636 1 610 0.0 852
Msa1235960 AT3G01180.1 41.021 529 262 11 90 610 301 787 1.29e-114 361
Msa1235960 AT5G24300.2 38.504 548 278 14 81 608 133 641 1.70e-110 347
Msa1235960 AT5G24300.1 38.504 548 278 14 81 608 133 641 1.70e-110 347
Msa1235960 AT4G18240.1 28.929 560 282 19 89 607 541 1025 1.08e-51 192
Msa1235960 AT1G11720.1 27.757 544 272 15 90 610 594 1039 3.59e-51 191
Msa1235960 AT1G11720.2 27.757 544 272 15 90 610 646 1091 3.94e-51 191

Find 165 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATCCTCCTTAATAAAT+TGG 0.148032 8_2:+14354228 None:intergenic
TCCAATTCCACTCCTTTATC+TGG 0.155027 8_2:+14354653 None:intergenic
AGCCATTCCCCAATTTATTA+AGG 0.277974 8_2:-14354237 Msa1235960:CDS
CTTCGCCGAACTGGTGTTAC+TGG 0.300119 8_2:-14354623 Msa1235960:CDS
AACATCCTCCTTAATAAATT+GGG 0.300262 8_2:+14354229 None:intergenic
TCATAAAGGGCACTAGCTTT+TGG 0.300486 8_2:+14357594 None:intergenic
GGAGGAAGTGCTGCTAAGTT+TGG 0.312861 8_2:-14352907 Msa1235960:CDS
CTGCTAAGTTTGGGAGTTCC+TGG 0.315078 8_2:-14352897 Msa1235960:CDS
AAGCAACACAATAATATTTC+AGG 0.322726 8_2:-14357543 Msa1235960:five_prime_UTR
ACAAAGGCCCTTGCAGTCTA+TGG 0.324992 8_2:-14353405 Msa1235960:CDS
AACAATAATCTATCATTCTT+AGG 0.334430 8_2:+14352658 None:intergenic
AGCTCATTCGACTTCATAGA+TGG 0.344129 8_2:-14354876 Msa1235960:CDS
TGGAGCAAAACTGGTGGTTT+AGG 0.348494 8_2:-14356619 Msa1235960:CDS
ACCAGCCAAATGGCATATTT+AGG 0.351605 8_2:-14355123 Msa1235960:CDS
CTCAATCTCTTGAAGGTTCA+TGG 0.355476 8_2:-14352773 Msa1235960:three_prime_UTR
GTTGAACTAATTAAGCTTCA+AGG 0.357647 8_2:+14357501 None:intergenic
TTTATCACTCTCTAGGCTAA+TGG 0.363828 8_2:-14356153 Msa1235960:intron
GATCGTCTGAAATTGAAAAC+TGG 0.364569 8_2:-14353802 Msa1235960:CDS
TCTGAGTCCATTATGTGTAT+TGG 0.365017 8_2:+14356798 None:intergenic
TGCTAGTCTCAATCTCTTGA+AGG 0.366692 8_2:-14352780 Msa1235960:intron
CCAAGCAGAAGTTGGATTGC+CGG 0.369816 8_2:-14354333 Msa1235960:CDS
GGTAGACTTGAAGAGCAAAA+AGG 0.369948 8_2:-14354278 Msa1235960:CDS
TTACATCTTTGTTCTAATCA+TGG 0.371499 8_2:+14352813 None:intergenic
GCATGGCTCAAGATCTTTCA+TGG 0.373044 8_2:-14353350 Msa1235960:CDS
TTAGTGATGTTCATTCATAA+AGG 0.375163 8_2:+14357580 None:intergenic
ACTAGTTCTTGAGCATAGTA+TGG 0.376634 8_2:+14354683 None:intergenic
ATACACAGGTTTAAATTCCT+TGG 0.380334 8_2:+14352710 None:intergenic
ATTCCTCTCATTGCTTTCAT+TGG 0.382733 8_2:-14354299 Msa1235960:CDS
CCCAGATAAAGGAGTGGAAT+TGG 0.385440 8_2:-14354654 Msa1235960:CDS
TTGATCATTTCTGCAAAAGT+TGG 0.386157 8_2:+14353378 None:intergenic
AGAAAAGCCAATACACATAA+TGG 0.386744 8_2:-14356805 Msa1235960:CDS
GGTGGTTTAGGAGATGTTCT+AGG 0.388108 8_2:-14356607 Msa1235960:CDS
ATTTCTTCTCCATCAATTCC+AGG 0.392626 8_2:+14352867 None:intergenic
TGAAATATTATTGTGTTGCT+TGG 0.403707 8_2:+14357545 None:intergenic
TATGCCATTTCTTAGGGAAC+AGG 0.404468 8_2:-14354099 Msa1235960:intron
GTACCAATTGTTGCCTCAAC+AGG 0.406492 8_2:-14353647 Msa1235960:CDS
GCATTCCTAAATATGCCATT+TGG 0.407931 8_2:+14355118 None:intergenic
ATAATCTTAACAGGCAGCTC+TGG 0.408448 8_2:-14355353 Msa1235960:intron
CCAATTCCACTCCTTTATCT+GGG 0.409765 8_2:+14354654 None:intergenic
GCAACTCCTCTAGCCTTGTC+AGG 0.409835 8_2:+14354030 None:intergenic
GGCAGTGAACCTGGAATTGA+TGG 0.411509 8_2:-14352876 Msa1235960:CDS
TAGTGATGTTCATTCATAAA+GGG 0.412225 8_2:+14357581 None:intergenic
GGAGTTCCTGGCAGTGAACC+TGG 0.416485 8_2:-14352885 Msa1235960:CDS
CTAGTGTCAGGCCCAGATAA+AGG 0.418565 8_2:-14354665 Msa1235960:CDS
CCACAAATTATAATACCTTT+CGG 0.419141 8_2:+14356679 None:intergenic
CTTGGAGTGCTTCTTTCAGA+AGG 0.419569 8_2:+14354351 None:intergenic
GGCATGAATTTGATCTTTGT+TGG 0.419673 8_2:-14356658 Msa1235960:CDS
CCGAAAGGTATTATAATTTG+TGG 0.422942 8_2:-14356679 Msa1235960:CDS
TGCCTCAACAGGTGGATTAG+TGG 0.426815 8_2:-14353636 Msa1235960:CDS
TCCCTGTGTGCTTCATTACC+TGG 0.428699 8_2:-14357471 Msa1235960:intron
TGCATGCAGTCAGTCCAATC+TGG 0.428726 8_2:-14353824 Msa1235960:intron
TATCCCACGCATCTTTGTAT+TGG 0.430966 8_2:+14356097 None:intergenic
CAATTTCAGACGATCCAGAT+TGG 0.431197 8_2:+14353810 None:intergenic
TCACCCTATATTTCTTGAAA+AGG 0.432618 8_2:-14355863 Msa1235960:intron
TTCTTTCATTGCTTTAAAAG+AGG 0.435407 8_2:-14355907 Msa1235960:CDS
GGTGTTACTGGTATTGTAAA+TGG 0.437797 8_2:-14354611 Msa1235960:CDS
AGTAAGCTTACTGCTAATAC+TGG 0.437855 8_2:+14356574 None:intergenic
CCACAAGGCTCAAATCTACT+AGG 0.441652 8_2:+14353949 None:intergenic
AAATATTTCTCAGGACCATA+TGG 0.444026 8_2:-14355298 Msa1235960:intron
CGATCGGAGTGAGCAAGTTA+AGG 0.447693 8_2:+14352540 None:intergenic
CGCTGTGGATCCGGCTGATG+TGG 0.450888 8_2:-14353448 Msa1235960:CDS
CCACCTGTTGAGGCAACAAT+TGG 0.451085 8_2:+14353644 None:intergenic
TTAGCACACATGATAATTGC+AGG 0.452499 8_2:-14353991 Msa1235960:CDS
GTTGGTCCATGGAGCAAAAC+TGG 0.452504 8_2:-14356628 Msa1235960:CDS
TGCAATTATCATGTGTGCTA+AGG 0.453551 8_2:+14353993 None:intergenic
TTAAACCTGTGTATCTAACT+TGG 0.454001 8_2:-14352701 Msa1235960:three_prime_UTR
GAGGAAGTGCTGCTAAGTTT+GGG 0.458467 8_2:-14352906 Msa1235960:CDS
ACTTATAATTACTCCATCAC+TGG 0.459353 8_2:+14352741 None:intergenic
ACCTTCCACGTGAAGTGCAT+TGG 0.462787 8_2:+14357622 None:intergenic
TTAGTGTGACGCTGTGGATC+CGG 0.465682 8_2:-14353457 Msa1235960:intron
TATTATTACTTCAACATTGA+AGG 0.465906 8_2:+14353574 None:intergenic
ACTTCCTCCCACTTCTTAGC+AGG 0.470539 8_2:+14352921 None:intergenic
TTTCAAGTAGCATGAGATAA+GGG 0.470650 8_2:+14355153 None:intergenic
CCAAGGCAGATTTGCATTCG+CGG 0.473556 8_2:-14354934 Msa1235960:CDS
CTCCTTAATAAATTGGGGAA+TGG 0.479356 8_2:+14354235 None:intergenic
GACAACATTCTTCGCCGAAC+TGG 0.480449 8_2:-14354632 Msa1235960:CDS
TGTTTATTACAGGTAAAAGT+AGG 0.480821 8_2:-14355952 Msa1235960:intron
GTTATGTATTTGTCAGTGGA+TGG 0.482006 8_2:+14354566 None:intergenic
ACAGTCAAAGAAGGTTTCAC+TGG 0.487245 8_2:-14353611 Msa1235960:CDS
AAAATCAACTGGATGAAAGC+TGG 0.487870 8_2:-14354740 Msa1235960:CDS
TTAGACTCACATGAGATAGT+TGG 0.490478 8_2:+14356856 None:intergenic
TAGAACTCCAATTAAAATGA+AGG 0.490575 8_2:-14356746 Msa1235960:CDS
ACGAGCAATAAATATTTCTC+AGG 0.491007 8_2:-14355307 Msa1235960:CDS
ATCTTTGTTGGAACTGAGGT+TGG 0.492697 8_2:-14356646 Msa1235960:CDS
AAATGAAGGCAGTGAAATCA+AGG 0.495094 8_2:-14356732 Msa1235960:CDS
TCAATTCCAGGTTCACTGCC+AGG 0.495114 8_2:+14352879 None:intergenic
AGGTTTCACTGGATTTCAGA+TGG 0.496834 8_2:-14353600 Msa1235960:CDS
AGTTAAGGAGTCGAGTGATA+AGG 0.498172 8_2:+14352555 None:intergenic
GCAGTGAAATCAAGGAGAAA+AGG 0.499059 8_2:-14356724 Msa1235960:CDS
AGGTATGTTAAACCAGTTGT+TGG 0.500872 8_2:-14354767 Msa1235960:CDS
TGGTAATCATCTCCCGTGGC+AGG 0.502745 8_2:+14355728 None:intergenic
TAAAACGTAGTTGATTGTCT+TGG 0.510188 8_2:+14355708 None:intergenic
TTGGAGTGCTTCTTTCAGAA+GGG 0.511966 8_2:+14354352 None:intergenic
TCCTAAATATGCCATTTGGC+TGG 0.513729 8_2:+14355122 None:intergenic
CCTAGTAGATTTGAGCCTTG+TGG 0.515224 8_2:-14353949 Msa1235960:CDS
CCGGCAATCCAACTTCTGCT+TGG 0.516075 8_2:+14354333 None:intergenic
AAATCTATGTACCAGCCAAA+TGG 0.518875 8_2:-14355133 Msa1235960:CDS
GCAATTATCATGTGTGCTAA+GGG 0.520362 8_2:+14353994 None:intergenic
TGGAGAAGAAATTGCTCCAC+AGG 0.521835 8_2:-14352856 Msa1235960:CDS
GAAGCACTCCAAGCAGAAGT+TGG 0.523874 8_2:-14354341 Msa1235960:CDS
ATTTCAAGTAGCATGAGATA+AGG 0.525167 8_2:+14355152 None:intergenic
GCTATTGCATCCACATCAGC+CGG 0.525934 8_2:+14353438 None:intergenic
TTGGAACTGAGGTTGGTCCA+TGG 0.530234 8_2:-14356639 Msa1235960:CDS
AGAAATTGCTCCACAGGCAA+AGG 0.537424 8_2:-14352850 Msa1235960:CDS
CCGCGAATGCAAATCTGCCT+TGG 0.538259 8_2:+14354934 None:intergenic
CTCATAGAACCAAGTCTCAT+CGG 0.538517 8_2:+14356826 None:intergenic
CAATACCAGTAACACCAGTT+CGG 0.539892 8_2:+14354618 None:intergenic
GGCAGCTCTGGAAGCAGCAA+GGG 0.542199 8_2:-14355341 Msa1235960:CDS
TATGCTCAAGAACTAGTGTC+AGG 0.557035 8_2:-14354677 Msa1235960:CDS
AAAATTTATGGACCTGCCAC+GGG 0.558373 8_2:-14355740 Msa1235960:CDS
CTTATAATTACTCCATCACT+GGG 0.560728 8_2:+14352742 None:intergenic
TTAGTGGACACAGTCAAAGA+AGG 0.561216 8_2:-14353620 Msa1235960:CDS
CCAATTGTTGCCTCAACAGG+TGG 0.561384 8_2:-14353644 Msa1235960:CDS
GGTTTCACTGGATTTCAGAT+GGG 0.561885 8_2:-14353599 Msa1235960:CDS
CATTCCCCAATTTATTAAGG+AGG 0.565255 8_2:-14354234 Msa1235960:CDS
TCCAATGCACTTCACGTGGA+AGG 0.568774 8_2:-14357623 Msa1235960:five_prime_UTR
ATGGAACTTCACCCCAGTGA+TGG 0.572735 8_2:-14352754 Msa1235960:three_prime_UTR
GGCTCAAGATCTTTCATGGA+AGG 0.575124 8_2:-14353346 Msa1235960:intron
AAAACAGCACCGATGAGACT+TGG 0.575958 8_2:-14356835 Msa1235960:CDS
TTGGAGTTCCATAGACTGCA+AGG 0.578650 8_2:+14353397 None:intergenic
ACTTTCCAAGTTAGATACAC+AGG 0.578848 8_2:+14352696 None:intergenic
ATTAGGGACCTGCTAAGAAG+TGG 0.580093 8_2:-14352929 Msa1235960:intron
CGTCGCTAATGATTGGCACA+CGG 0.584845 8_2:-14355176 Msa1235960:CDS
GGATACAAGTGTAACAATTG+AGG 0.586203 8_2:-14356079 Msa1235960:intron
TACTGGTATTGTAAATGGCA+TGG 0.587387 8_2:-14354606 Msa1235960:CDS
AGAAAGAATGTTATGCCGAA+AGG 0.592828 8_2:-14356694 Msa1235960:CDS
GACAGTTATGTATTTGTCAG+TGG 0.592989 8_2:+14354562 None:intergenic
CAGCTACAAGCTATGCGCTA+CGG 0.593914 8_2:-14353919 Msa1235960:CDS
AAGCTTACTGCTAATACTGG+TGG 0.598496 8_2:+14356577 None:intergenic
TGCCTTGGTATGCAATGTTG+TGG 0.598925 8_2:+14354949 None:intergenic
GCTCATTCGACTTCATAGAT+GGG 0.599348 8_2:-14354875 Msa1235960:intron
AGGCAGCTCTGGAAGCAGCA+AGG 0.600304 8_2:-14355342 Msa1235960:CDS
ACATCCTCCTTAATAAATTG+GGG 0.602752 8_2:+14354230 None:intergenic
TCGTCTACTCAGGTATTGGA+AGG 0.602861 8_2:-14354380 Msa1235960:intron
TTTGATCTTTGTTGGAACTG+AGG 0.607065 8_2:-14356650 Msa1235960:CDS
GTTATAAAACCTGACAGAAG+AGG 0.608463 8_2:+14355684 None:intergenic
TTGGTCATAACGTGGAGCGA+TGG 0.612220 8_2:+14356116 None:intergenic
TAAGGAGTCGAGTGATAAGG+AGG 0.617316 8_2:+14352558 None:intergenic
TTTACTTTAGTGTGACGCTG+TGG 0.621041 8_2:-14353463 Msa1235960:intron
ATGACCAATACAAAGATGCG+TGG 0.624316 8_2:-14356101 Msa1235960:CDS
TTAGGGACCTGCTAAGAAGT+GGG 0.625550 8_2:-14352928 Msa1235960:intron
TCTATCCAATGCACTTCACG+TGG 0.626245 8_2:-14357627 Msa1235960:five_prime_UTR
GTCCACTAATCCACCTGTTG+AGG 0.626982 8_2:+14353634 None:intergenic
ACCAGGTAATGAAGCACACA+GGG 0.629679 8_2:+14357470 None:intergenic
AGAAATGATCAAGAATTGCA+TGG 0.636503 8_2:-14353367 Msa1235960:CDS
ATGGCATGGATGTTCAAGAG+TGG 0.637982 8_2:-14354592 Msa1235960:CDS
TCATATCCTGACAAGGCTAG+AGG 0.641716 8_2:-14354036 Msa1235960:CDS
AACCAGGTAATGAAGCACAC+AGG 0.643692 8_2:+14357469 None:intergenic
TGACCAATACAAAGATGCGT+GGG 0.645410 8_2:-14356100 Msa1235960:CDS
TGATTGAATTTGAAGGTTTG+GGG 0.645543 8_2:-14355776 Msa1235960:intron
TGAAATATCATATCCTGACA+AGG 0.646436 8_2:-14354043 Msa1235960:CDS
GGTTTAGGAGATGTTCTAGG+AGG 0.652378 8_2:-14356604 Msa1235960:CDS
TGGAGTTCCATAGACTGCAA+GGG 0.653724 8_2:+14353398 None:intergenic
CTACCAATGAAAGCAATGAG+AGG 0.658131 8_2:+14354296 None:intergenic
GTCTTGGTAATCATCTCCCG+TGG 0.663295 8_2:+14355724 None:intergenic
AGATAGTTGGTACATTGACA+TGG 0.665294 8_2:+14356869 None:intergenic
TCTTTGTATTGGTCATAACG+TGG 0.669620 8_2:+14356108 None:intergenic
GTCAGGCCCAGATAAAGGAG+TGG 0.669932 8_2:-14354660 Msa1235960:CDS
TGTAGCTGAATGAGACCACA+AGG 0.671420 8_2:+14353934 None:intergenic
GGTCCATGGAGCAAAACTGG+TGG 0.674393 8_2:-14356625 Msa1235960:CDS
AATAGCAAAGACTGTCACAA+AGG 0.677740 8_2:-14353421 Msa1235960:CDS
ATCCACAACATTGCATACCA+AGG 0.683894 8_2:-14354951 Msa1235960:CDS
ATGGACTAACAGTTAAAACC+CGG 0.694472 8_2:+14354702 None:intergenic
GGGACCTGCTAAGAAGTGGG+AGG 0.697968 8_2:-14352925 Msa1235960:CDS
TTATAATTACTCCATCACTG+GGG 0.837604 8_2:+14352743 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTGTATTTTTTTTAAA+CGG - chr8_2:14357550-14357569 Msa1235960:five_prime_UTR 10.0%
!! TTGGTAAAAAATAAAGTTTA+AGG + chr8_2:14352777-14352796 None:intergenic 15.0%
!!! TAAAATAAAACTTGCTTAAA+TGG + chr8_2:14352873-14352892 None:intergenic 15.0%
!!! TTATTTTTCAGTATAAAAGA+TGG - chr8_2:14353243-14353262 Msa1235960:intron 15.0%
!! TTTAAGAAACAATAAGATAA+TGG + chr8_2:14356698-14356717 None:intergenic 15.0%
!!! TATTTTTTACCAAAGTTTAG+TGG - chr8_2:14352784-14352803 Msa1235960:intron 20.0%
!! TTAATCTAACAATTGACATT+TGG + chr8_2:14353013-14353032 None:intergenic 20.0%
!! AATTTGAACTATAGAGAATT+TGG - chr8_2:14353132-14353151 Msa1235960:intron 20.0%
!! TTAATGATGATTGAATTTGA+AGG - chr8_2:14354401-14354420 Msa1235960:intron 20.0%
!! AAAACTGGAACAAAAATTTA+TGG - chr8_2:14354432-14354451 Msa1235960:intron 20.0%
!! AAAATGACAAAGGAAAAATT+AGG + chr8_2:14354798-14354817 None:intergenic 20.0%
!! ATAGTCATAAATGAAATTCT+TGG - chr8_2:14354917-14354936 Msa1235960:CDS 20.0%
!! TACAAAAAACAACCTAATAA+TGG + chr8_2:14355214-14355233 None:intergenic 20.0%
!! CATCATTATTATACTTACTA+GGG + chr8_2:14355991-14356010 None:intergenic 20.0%
!! TATTATTACTTCAACATTGA+AGG + chr8_2:14356613-14356632 None:intergenic 20.0%
!!! TGAATTTTGTTTTGGAATTA+GGG - chr8_2:14357239-14357258 Msa1235960:intron 20.0%
!! AACAATAATCTATCATTCTT+AGG + chr8_2:14357529-14357548 None:intergenic 20.0%
! TAGTGATGTTCATTCATAAA+GGG + chr8_2:14352606-14352625 None:intergenic 25.0%
! TTAGTGATGTTCATTCATAA+AGG + chr8_2:14352607-14352626 None:intergenic 25.0%
!! TGAAATATTATTGTGTTGCT+TGG + chr8_2:14352642-14352661 None:intergenic 25.0%
! AAGCAACACAATAATATTTC+AGG - chr8_2:14352641-14352660 Msa1235960:three_prime_UTR 25.0%
!! TAAGGCATCAAATTTGAAAT+TGG + chr8_2:14352759-14352778 None:intergenic 25.0%
! TAATTAACACCACTAAACTT+TGG + chr8_2:14352796-14352815 None:intergenic 25.0%
!!! TAAAGTCAAATGTTTGTTGT+TGG + chr8_2:14353037-14353056 None:intergenic 25.0%
! TAGAACTCCAATTAAAATGA+AGG - chr8_2:14353438-14353457 Msa1235960:CDS 25.0%
! CCACAAATTATAATACCTTT+CGG + chr8_2:14353508-14353527 None:intergenic 25.0%
! TCTACGTTGTAAATTATGAT+TGG - chr8_2:14353753-14353772 Msa1235960:intron 25.0%
!! ACAATGAAAACATTTTGTCA+AGG + chr8_2:14354141-14354160 None:intergenic 25.0%
! TATTGCAATCTGTTTATTAC+AGG - chr8_2:14354222-14354241 Msa1235960:CDS 25.0%
! TGTTTATTACAGGTAAAAGT+AGG - chr8_2:14354232-14354251 Msa1235960:CDS 25.0%
!!! TTCTTTCATTGCTTTAAAAG+AGG - chr8_2:14354277-14354296 Msa1235960:CDS 25.0%
!!! TCACCTTTTCAAGAAATATA+GGG + chr8_2:14354327-14354346 None:intergenic 25.0%
! ATGATTGAATTTGAAGGTTT+GGG - chr8_2:14354407-14354426 Msa1235960:intron 25.0%
! TAAACAACATTGTAACCAAA+GGG + chr8_2:14354531-14354550 None:intergenic 25.0%
!! GTAGCTTTTTATATTGTCTA+AGG - chr8_2:14354567-14354586 Msa1235960:CDS 25.0%
! ATGAAATTCTTGGAAACAAA+TGG - chr8_2:14354927-14354946 Msa1235960:CDS 25.0%
! TTATGTTGTTCTAATCTTGT+AGG - chr8_2:14355397-14355416 Msa1235960:intron 25.0%
! AACATCCTCCTTAATAAATT+GGG + chr8_2:14355958-14355977 None:intergenic 25.0%
! CCATCATTATTATACTTACT+AGG + chr8_2:14355992-14356011 None:intergenic 25.0%
! CCTAGTAAGTATAATAATGA+TGG - chr8_2:14355989-14356008 Msa1235960:intron 25.0%
! ATCCTTTCTTACTTCATTAA+AGG - chr8_2:14356037-14356056 Msa1235960:intron 25.0%
! TTCCTTTAATGAAGTAAGAA+AGG + chr8_2:14356042-14356061 None:intergenic 25.0%
!! AATATGTTATGCCATTTCTT+AGG - chr8_2:14356078-14356097 Msa1235960:intron 25.0%
!! ATATGTTATGCCATTTCTTA+GGG - chr8_2:14356079-14356098 Msa1235960:intron 25.0%
! AAATTATTGAGGAAGTCTTA+TGG + chr8_2:14356492-14356511 None:intergenic 25.0%
! AAATGTGAGACAAATTATTG+AGG + chr8_2:14356503-14356522 None:intergenic 25.0%
!!! TCACATTTTTTACTTCAACT+AGG - chr8_2:14356515-14356534 Msa1235960:intron 25.0%
!! TTTAGTGCATTTTAGATTGA+CGG - chr8_2:14356877-14356896 Msa1235960:CDS 25.0%
!!! TGTATCCTAATTTTTTTCGT+AGG + chr8_2:14357080-14357099 None:intergenic 25.0%
!!! TGAGTAACTGAATTTTGTTT+TGG - chr8_2:14357231-14357250 Msa1235960:intron 25.0%
!!! CTGAATTTTGTTTTGGAATT+AGG - chr8_2:14357238-14357257 Msa1235960:intron 25.0%
! TTACATCTTTGTTCTAATCA+TGG + chr8_2:14357374-14357393 None:intergenic 25.0%
! ATGATTAGAACAAAGATGTA+AGG - chr8_2:14357373-14357392 Msa1235960:intron 25.0%
! TGATTAGAACAAAGATGTAA+GGG - chr8_2:14357374-14357393 Msa1235960:intron 25.0%
!! ATTATAAGTGCATTTTTCCA+AGG - chr8_2:14357457-14357476 Msa1235960:intron 25.0%
!!! ATTGTCAATTTTTTATGCTG+AGG - chr8_2:14357584-14357603 Msa1235960:five_prime_UTR 25.0%
!!! TTGTCAATTTTTTATGCTGA+GGG - chr8_2:14357585-14357604 Msa1235960:five_prime_UTR 25.0%
GTTGAACTAATTAAGCTTCA+AGG + chr8_2:14352686-14352705 None:intergenic 30.0%
CTATAATATACTAGCTAACC+AGG + chr8_2:14352734-14352753 None:intergenic 30.0%
GTACAAATTAGGATTCTCTA+TGG - chr8_2:14352954-14352973 Msa1235960:intron 30.0%
GAACTATAGAGAATTTGGAA+TGG - chr8_2:14353137-14353156 Msa1235960:intron 30.0%
ATAATTTCACAAGTGATGAG+AGG - chr8_2:14353181-14353200 Msa1235960:intron 30.0%
TGAAACTTCAAATCTAAGTC+TGG - chr8_2:14353205-14353224 Msa1235960:intron 30.0%
AGAAAAGCCAATACACATAA+TGG - chr8_2:14353379-14353398 Msa1235960:CDS 30.0%
! ACTCAGAATTTTGAACTCAT+TGG - chr8_2:14353402-14353421 Msa1235960:CDS 30.0%
!! TTCACTGCCTTCATTTTAAT+TGG + chr8_2:14353448-14353467 None:intergenic 30.0%
!! CCGAAAGGTATTATAATTTG+TGG - chr8_2:14353505-14353524 Msa1235960:intron 30.0%
TCCAACACATTAGTTACAAT+CGG + chr8_2:14353920-14353939 None:intergenic 30.0%
TCTCTAATTTATCACTCTCT+AGG - chr8_2:14354024-14354043 Msa1235960:CDS 30.0%
TAACTATAGCATAGCACAAT+TGG + chr8_2:14354193-14354212 None:intergenic 30.0%
TCACCCTATATTTCTTGAAA+AGG - chr8_2:14354321-14354340 Msa1235960:CDS 30.0%
!! CTCACCTTTTCAAGAAATAT+AGG + chr8_2:14354328-14354347 None:intergenic 30.0%
GATGATTGAATTTGAAGGTT+TGG - chr8_2:14354406-14354425 Msa1235960:intron 30.0%
TGATTGAATTTGAAGGTTTG+GGG - chr8_2:14354408-14354427 Msa1235960:intron 30.0%
TAAAACGTAGTTGATTGTCT+TGG + chr8_2:14354479-14354498 None:intergenic 30.0%
! GTTTTATAACCATATCCCTT+TGG - chr8_2:14354513-14354532 Msa1235960:intron 30.0%
GTAAACAACATTGTAACCAA+AGG + chr8_2:14354532-14354551 None:intergenic 30.0%
AGACTGTGATTTACTGTTAA+AGG + chr8_2:14354679-14354698 None:intergenic 30.0%
CAAGGGAAAAAAAATGACAA+AGG + chr8_2:14354808-14354827 None:intergenic 30.0%
!!! CTTTGTCATTTTTTTTCCCT+TGG - chr8_2:14354806-14354825 Msa1235960:intron 30.0%
CCTGTTAAGATTATTTCCAA+GGG + chr8_2:14354825-14354844 None:intergenic 30.0%
ACGAGCAATAAATATTTCTC+AGG - chr8_2:14354877-14354896 Msa1235960:CDS 30.0%
AAATATTTCTCAGGACCATA+TGG - chr8_2:14354886-14354905 Msa1235960:CDS 30.0%
TGACTATAGTTCATACCATA+TGG + chr8_2:14354904-14354923 None:intergenic 30.0%
!!! ATGTTTTGATTTTCGTATGC+AGG - chr8_2:14354970-14354989 Msa1235960:intron 30.0%
! TTTCAAGTAGCATGAGATAA+GGG + chr8_2:14355034-14355053 None:intergenic 30.0%
! ATTTCAAGTAGCATGAGATA+AGG + chr8_2:14355035-14355054 None:intergenic 30.0%
ATATTTAGGAATGCCAAAGT+AGG - chr8_2:14355075-14355094 Msa1235960:intron 30.0%
AGTTCTTCAAACTTTCTTTC+TGG - chr8_2:14355182-14355201 Msa1235960:CDS 30.0%
! AATGAGCTTTTAAATTGGTC+GGG + chr8_2:14355296-14355315 None:intergenic 30.0%
! GAATGAGCTTTTAAATTGGT+CGG + chr8_2:14355297-14355316 None:intergenic 30.0%
! AGTCGAATGAGCTTTTAAAT+TGG + chr8_2:14355301-14355320 None:intergenic 30.0%
! TTGATTTTTCTTCCAACAAC+TGG + chr8_2:14355432-14355451 None:intergenic 30.0%
TTGTTGGAAGAAAAATCAAC+TGG - chr8_2:14355433-14355452 Msa1235960:intron 30.0%
!! AGAGGAATATTTTTGTCAAC+CGG + chr8_2:14355873-14355892 None:intergenic 30.0%
ACATCCTCCTTAATAAATTG+GGG + chr8_2:14355957-14355976 None:intergenic 30.0%
GAACATCCTCCTTAATAAAT+TGG + chr8_2:14355959-14355978 None:intergenic 30.0%
TGAAATATCATATCCTGACA+AGG - chr8_2:14356141-14356160 Msa1235960:CDS 30.0%
GACACATTTGCATTAAATGA+AGG + chr8_2:14356647-14356666 None:intergenic 30.0%
TTAATGCAAATGTGTCCATA+CGG - chr8_2:14356651-14356670 Msa1235960:CDS 30.0%
TTACTACTTAATCTACCGTA+TGG + chr8_2:14356669-14356688 None:intergenic 30.0%
TTGATCATTTCTGCAAAAGT+TGG + chr8_2:14356809-14356828 None:intergenic 30.0%
AGAAATGATCAAGAATTGCA+TGG - chr8_2:14356817-14356836 Msa1235960:CDS 30.0%
! TTTTAGCAAAAGTTACAGTC+TGG + chr8_2:14356947-14356966 None:intergenic 30.0%
AAAACTACTAAGTGCATGTT+TGG + chr8_2:14356989-14357008 None:intergenic 30.0%
GATAGCCTACGAAAAAAATT+AGG - chr8_2:14357072-14357091 Msa1235960:intron 30.0%
CTATTTGGATAAACTTGTCA+TGG + chr8_2:14357189-14357208 None:intergenic 30.0%
CATGACAAGTTTATCCAAAT+AGG - chr8_2:14357187-14357206 Msa1235960:intron 30.0%
! GGATAAATTTAGAGCCTATT+TGG + chr8_2:14357204-14357223 None:intergenic 30.0%
AATTCAGTTACTCAGTTGAT+GGG + chr8_2:14357225-14357244 None:intergenic 30.0%
AAATTCAGTTACTCAGTTGA+TGG + chr8_2:14357226-14357245 None:intergenic 30.0%
TTATAATTACTCCATCACTG+GGG + chr8_2:14357444-14357463 None:intergenic 30.0%
CTTATAATTACTCCATCACT+GGG + chr8_2:14357445-14357464 None:intergenic 30.0%
ACTTATAATTACTCCATCAC+TGG + chr8_2:14357446-14357465 None:intergenic 30.0%
ATACACAGGTTTAAATTCCT+TGG + chr8_2:14357477-14357496 None:intergenic 30.0%
TTAAACCTGTGTATCTAACT+TGG - chr8_2:14357483-14357502 Msa1235960:five_prime_UTR 30.0%
! CTAATTTGTACAACTCGATC+CGG + chr8_2:14352945-14352964 None:intergenic 35.0%
ATTTCCTTGTAGCTTGGATT+TGG + chr8_2:14353115-14353134 None:intergenic 35.0%
GTTCAAATTTCCTTGTAGCT+TGG + chr8_2:14353121-14353140 None:intergenic 35.0%
AACTTCAAATCTAAGTCTGG+TGG - chr8_2:14353208-14353227 Msa1235960:intron 35.0%
! AGATAGTTGGTACATTGACA+TGG + chr8_2:14353318-14353337 None:intergenic 35.0%
TTAGACTCACATGAGATAGT+TGG + chr8_2:14353331-14353350 None:intergenic 35.0%
TCTGAGTCCATTATGTGTAT+TGG + chr8_2:14353389-14353408 None:intergenic 35.0%
AAATGAAGGCAGTGAAATCA+AGG - chr8_2:14353452-14353471 Msa1235960:CDS 35.0%
AGAAAGAATGTTATGCCGAA+AGG - chr8_2:14353490-14353509 Msa1235960:intron 35.0%
GGCATGAATTTGATCTTTGT+TGG - chr8_2:14353526-14353545 Msa1235960:intron 35.0%
TTTGATCTTTGTTGGAACTG+AGG - chr8_2:14353534-14353553 Msa1235960:intron 35.0%
AGTAAGCTTACTGCTAATAC+TGG + chr8_2:14353613-14353632 None:intergenic 35.0%
TAGCAGTAAGCTTACTGTTA+TGG - chr8_2:14353617-14353636 Msa1235960:CDS 35.0%
CCAACACATTAGTTACAATC+GGG + chr8_2:14353919-14353938 None:intergenic 35.0%
TCTGTAGTGGTTGACATATT+TGG - chr8_2:14353975-14353994 Msa1235960:CDS 35.0%
TTTATCACTCTCTAGGCTAA+TGG - chr8_2:14354031-14354050 Msa1235960:CDS 35.0%
! TCTTTGTATTGGTCATAACG+TGG + chr8_2:14354079-14354098 None:intergenic 35.0%
GGATACAAGTGTAACAATTG+AGG - chr8_2:14354105-14354124 Msa1235960:intron 35.0%
CATTGTAATCTTCATTGCAC+AGG - chr8_2:14354155-14354174 Msa1235960:intron 35.0%
AAAAATTTATGGACCTGCCA+CGG - chr8_2:14354443-14354462 Msa1235960:intron 35.0%
GTTATAAAACCTGACAGAAG+AGG + chr8_2:14354503-14354522 None:intergenic 35.0%
ACATTGTAACCAAAGGGATA+TGG + chr8_2:14354525-14354544 None:intergenic 35.0%
CCCTTGGAAATAATCTTAAC+AGG - chr8_2:14354822-14354841 Msa1235960:intron 35.0%
GCCTGTTAAGATTATTTCCA+AGG + chr8_2:14354826-14354845 None:intergenic 35.0%
! TCATTTTCGTCGCTAATGAT+TGG - chr8_2:14355001-14355020 Msa1235960:intron 35.0%
AAATCTATGTACCAGCCAAA+TGG - chr8_2:14355051-14355070 Msa1235960:intron 35.0%
GCATTCCTAAATATGCCATT+TGG + chr8_2:14355069-14355088 None:intergenic 35.0%
AATGCCAAAGTAGGTCTAAA+TGG - chr8_2:14355084-14355103 Msa1235960:intron 35.0%
! TTCTGGTTGCTACCATTATT+AGG - chr8_2:14355199-14355218 Msa1235960:intron 35.0%
AGGTATGTTAAACCAGTTGT+TGG - chr8_2:14355417-14355436 Msa1235960:intron 35.0%
AAAATCAACTGGATGAAAGC+TGG - chr8_2:14355444-14355463 Msa1235960:intron 35.0%
!!! CTGGAATTTTAGAATCTCAC+CGG - chr8_2:14355463-14355482 Msa1235960:intron 35.0%
!!! TGGAATTTTAGAATCTCACC+GGG - chr8_2:14355464-14355483 Msa1235960:intron 35.0%
! ATGGACTAACAGTTAAAACC+CGG + chr8_2:14355485-14355504 None:intergenic 35.0%
! ACTAGTTCTTGAGCATAGTA+TGG + chr8_2:14355504-14355523 None:intergenic 35.0%
!! GGTGTTACTGGTATTGTAAA+TGG - chr8_2:14355573-14355592 Msa1235960:intron 35.0%
TACTGGTATTGTAAATGGCA+TGG - chr8_2:14355578-14355597 Msa1235960:intron 35.0%
GTTATGTATTTGTCAGTGGA+TGG + chr8_2:14355621-14355640 None:intergenic 35.0%
GACAGTTATGTATTTGTCAG+TGG + chr8_2:14355625-14355644 None:intergenic 35.0%
!! AGTTTCTCTAAAATGTGTCG+TGG - chr8_2:14355689-14355708 Msa1235960:intron 35.0%
ATTCCTCTCATTGCTTTCAT+TGG - chr8_2:14355885-14355904 Msa1235960:CDS 35.0%
AGCCATTCCCCAATTTATTA+AGG - chr8_2:14355947-14355966 Msa1235960:intron 35.0%
CTCCTTAATAAATTGGGGAA+TGG + chr8_2:14355952-14355971 None:intergenic 35.0%
CATTCCCCAATTTATTAAGG+AGG - chr8_2:14355950-14355969 Msa1235960:intron 35.0%
! TTTTCCTGTTCCCTAAGAAA+TGG + chr8_2:14356092-14356111 None:intergenic 35.0%
TTCTTAGGGAACAGGAAAAA+AGG - chr8_2:14356093-14356112 Msa1235960:CDS 35.0%
GCAATTATCATGTGTGCTAA+GGG + chr8_2:14356193-14356212 None:intergenic 35.0%
TGCAATTATCATGTGTGCTA+AGG + chr8_2:14356194-14356213 None:intergenic 35.0%
TTAGCACACATGATAATTGC+AGG - chr8_2:14356193-14356212 Msa1235960:intron 35.0%
CACTACATACAATCCAAATC+TGG + chr8_2:14356336-14356355 None:intergenic 35.0%
! GATCGTCTGAAATTGAAAAC+TGG - chr8_2:14356382-14356401 Msa1235960:intron 35.0%
! AACTGGACTGTCAATTTTGA+TGG - chr8_2:14356399-14356418 Msa1235960:intron 35.0%
! TTATTGAGGAAGTCTTATGG+CGG + chr8_2:14356489-14356508 None:intergenic 35.0%
ATTAAATGAAGGCTGCTGTT+AGG + chr8_2:14356636-14356655 None:intergenic 35.0%
AATAGCAAAGACTGTCACAA+AGG - chr8_2:14356763-14356782 Msa1235960:CDS 35.0%
! TTTTAGATTGACGGTGAGTT+TGG - chr8_2:14356886-14356905 Msa1235960:CDS 35.0%
ATTTCTTCTCCATCAATTCC+AGG + chr8_2:14357320-14357339 None:intergenic 35.0%
ACTTTCCAAGTTAGATACAC+AGG + chr8_2:14357491-14357510 None:intergenic 35.0%
!!! AATTTTTTATGCTGAGGGTG+AGG - chr8_2:14357590-14357609 Msa1235960:five_prime_UTR 35.0%
!!! TCATAAAGGGCACTAGCTTT+TGG + chr8_2:14352593-14352612 None:intergenic 40.0%
! CGGATCGAGTTGTACAAATT+AGG - chr8_2:14352943-14352962 Msa1235960:intron 40.0%
TAAAGAGAGCTGCAAGAACA+TGG - chr8_2:14353058-14353077 Msa1235960:intron 40.0%
GCAAGAACATGGATCCTTTA+CGG - chr8_2:14353069-14353088 Msa1235960:intron 40.0%
CTCATAGAACCAAGTCTCAT+CGG + chr8_2:14353361-14353380 None:intergenic 40.0%
GCAGTGAAATCAAGGAGAAA+AGG - chr8_2:14353460-14353479 Msa1235960:intron 40.0%
ATCTTTGTTGGAACTGAGGT+TGG - chr8_2:14353538-14353557 Msa1235960:intron 40.0%
AAGCTTACTGCTAATACTGG+TGG + chr8_2:14353610-14353629 None:intergenic 40.0%
CTGAATAATGTGAGTCTCAG+CGG + chr8_2:14353876-14353895 None:intergenic 40.0%
TGAGACTCACATTATTCAGC+AGG - chr8_2:14353877-14353896 Msa1235960:intron 40.0%
CCCGATTGTAACTAATGTGT+TGG - chr8_2:14353916-14353935 Msa1235960:CDS 40.0%
CTGATAGCATTTCTCTGTAG+TGG - chr8_2:14353962-14353981 Msa1235960:CDS 40.0%
ATGACCAATACAAAGATGCG+TGG - chr8_2:14354083-14354102 Msa1235960:CDS 40.0%
TGACCAATACAAAGATGCGT+GGG - chr8_2:14354084-14354103 Msa1235960:CDS 40.0%
TATCCCACGCATCTTTGTAT+TGG + chr8_2:14354090-14354109 None:intergenic 40.0%
TTGAAGGTTTGGGGAAAAAC+TGG - chr8_2:14354417-14354436 Msa1235960:intron 40.0%
AAAATTTATGGACCTGCCAC+GGG - chr8_2:14354444-14354463 Msa1235960:intron 40.0%
ATAATCTTAACAGGCAGCTC+TGG - chr8_2:14354831-14354850 Msa1235960:intron 40.0%
ACCAGCCAAATGGCATATTT+AGG - chr8_2:14355061-14355080 Msa1235960:intron 40.0%
! TCCTAAATATGCCATTTGGC+TGG + chr8_2:14355065-14355084 None:intergenic 40.0%
! GTTGCCATTTAGACCTACTT+TGG + chr8_2:14355091-14355110 None:intergenic 40.0%
ATCCACAACATTGCATACCA+AGG - chr8_2:14355233-14355252 Msa1235960:intron 40.0%
AGCTCATTCGACTTCATAGA+TGG - chr8_2:14355308-14355327 Msa1235960:CDS 40.0%
GCTCATTCGACTTCATAGAT+GGG - chr8_2:14355309-14355328 Msa1235960:CDS 40.0%
TATGCTCAAGAACTAGTGTC+AGG - chr8_2:14355507-14355526 Msa1235960:intron 40.0%
CCAATTCCACTCCTTTATCT+GGG + chr8_2:14355533-14355552 None:intergenic 40.0%
TCCAATTCCACTCCTTTATC+TGG + chr8_2:14355534-14355553 None:intergenic 40.0%
CAATACCAGTAACACCAGTT+CGG + chr8_2:14355569-14355588 None:intergenic 40.0%
TTTAACTAGCTCGTCTACTC+AGG - chr8_2:14355794-14355813 Msa1235960:intron 40.0%
! TTGGAGTGCTTCTTTCAGAA+GGG + chr8_2:14355835-14355854 None:intergenic 40.0%
CTACCAATGAAAGCAATGAG+AGG + chr8_2:14355891-14355910 None:intergenic 40.0%
GGTAGACTTGAAGAGCAAAA+AGG - chr8_2:14355906-14355925 Msa1235960:CDS 40.0%
! TATGCCATTTCTTAGGGAAC+AGG - chr8_2:14356085-14356104 Msa1235960:CDS 40.0%
GGGAACAGGAAAAAAGGAAA+TGG - chr8_2:14356099-14356118 Msa1235960:CDS 40.0%
AGGAAAGGATTGTGTGAAGT+AGG + chr8_2:14356303-14356322 None:intergenic 40.0%
TTCACACAATCCTTTCCTAG+TGG - chr8_2:14356305-14356324 Msa1235960:intron 40.0%
TCTGGAAAAACCACTAGGAA+AGG + chr8_2:14356318-14356337 None:intergenic 40.0%
CCAAATCTGGAAAAACCACT+AGG + chr8_2:14356323-14356342 None:intergenic 40.0%
! CCTAGTGGTTTTTCCAGATT+TGG - chr8_2:14356320-14356339 Msa1235960:intron 40.0%
CAATTTCAGACGATCCAGAT+TGG + chr8_2:14356377-14356396 None:intergenic 40.0%
! GAAGTCTTATGGCGGAAAAT+CGG + chr8_2:14356481-14356500 None:intergenic 40.0%
! TTAGTGGACACAGTCAAAGA+AGG - chr8_2:14356564-14356583 Msa1235960:intron 40.0%
ACAGTCAAAGAAGGTTTCAC+TGG - chr8_2:14356573-14356592 Msa1235960:intron 40.0%
AGGTTTCACTGGATTTCAGA+TGG - chr8_2:14356584-14356603 Msa1235960:intron 40.0%
GGTTTCACTGGATTTCAGAT+GGG - chr8_2:14356585-14356604 Msa1235960:CDS 40.0%
TTTACTTTAGTGTGACGCTG+TGG - chr8_2:14356721-14356740 Msa1235960:CDS 40.0%
TGAGTTTGGCAAAATCAAGG+TGG - chr8_2:14356900-14356919 Msa1235960:CDS 40.0%
CTGGAGCTTCAACAAAATCA+CGG + chr8_2:14356928-14356947 None:intergenic 40.0%
! TGCTAGTCTCAATCTCTTGA+AGG - chr8_2:14357404-14357423 Msa1235960:intron 40.0%
CTCAATCTCTTGAAGGTTCA+TGG - chr8_2:14357411-14357430 Msa1235960:intron 40.0%
AGTTAAGGAGTCGAGTGATA+AGG + chr8_2:14357632-14357651 None:intergenic 40.0%
TCTATCCAATGCACTTCACG+TGG - chr8_2:14352557-14352576 Msa1235960:three_prime_UTR 45.0%
ACCAGGTAATGAAGCACACA+GGG + chr8_2:14352717-14352736 None:intergenic 45.0%
AACCAGGTAATGAAGCACAC+AGG + chr8_2:14352718-14352737 None:intergenic 45.0%
TTGAATATCGCCGTTTGAGC+CGG - chr8_2:14352923-14352942 Msa1235960:CDS 45.0%
GCTTGGATTTGGATCCTCTA+TGG + chr8_2:14353104-14353123 None:intergenic 45.0%
GGATCCAAATCCAAGCTACA+AGG - chr8_2:14353108-14353127 Msa1235960:intron 45.0%
!! AAAACAGCACCGATGAGACT+TGG - chr8_2:14353349-14353368 Msa1235960:CDS 45.0%
! AAACCACCAGTTTTGCTCCA+TGG + chr8_2:14353565-14353584 None:intergenic 45.0%
TGGAGCAAAACTGGTGGTTT+AGG - chr8_2:14353565-14353584 Msa1235960:intron 45.0%
GGTGGTTTAGGAGATGTTCT+AGG - chr8_2:14353577-14353596 Msa1235960:intron 45.0%
! GGTTTAGGAGATGTTCTAGG+AGG - chr8_2:14353580-14353599 Msa1235960:intron 45.0%
AATAATGTGAGTCTCAGCGG+CGG + chr8_2:14353873-14353892 None:intergenic 45.0%
!! ACGTTTTAGCCTCTTCTGTC+AGG - chr8_2:14354491-14354510 Msa1235960:intron 45.0%
! ATTGTCTAAGGTGCAGCTCA+CGG - chr8_2:14354579-14354598 Msa1235960:CDS 45.0%
AGCTCACGGAGAGAAATTTG+TGG - chr8_2:14354593-14354612 Msa1235960:CDS 45.0%
TGCCTTGGTATGCAATGTTG+TGG + chr8_2:14355238-14355257 None:intergenic 45.0%
CCCAGATAAAGGAGTGGAAT+TGG - chr8_2:14355530-14355549 Msa1235960:intron 45.0%
ATGGCATGGATGTTCAAGAG+TGG - chr8_2:14355592-14355611 Msa1235960:intron 45.0%
CGACGATTCGACAGTAAGAA+TGG - chr8_2:14355650-14355669 Msa1235960:intron 45.0%
TAGCTCGTCTACTCAGGTAT+TGG - chr8_2:14355800-14355819 Msa1235960:intron 45.0%
!! TCGTCTACTCAGGTATTGGA+AGG - chr8_2:14355804-14355823 Msa1235960:intron 45.0%
! CTTGGAGTGCTTCTTTCAGA+AGG + chr8_2:14355836-14355855 None:intergenic 45.0%
TCATATCCTGACAAGGCTAG+AGG - chr8_2:14356148-14356167 Msa1235960:intron 45.0%
CCACAAGGCTCAAATCTACT+AGG + chr8_2:14356238-14356257 None:intergenic 45.0%
CCTAGTAGATTTGAGCCTTG+TGG - chr8_2:14356235-14356254 Msa1235960:intron 45.0%
TGTAGCTGAATGAGACCACA+AGG + chr8_2:14356253-14356272 None:intergenic 45.0%
GTACCAATTGTTGCCTCAAC+AGG - chr8_2:14356537-14356556 Msa1235960:intron 45.0%
TGGAGTTCCATAGACTGCAA+GGG + chr8_2:14356789-14356808 None:intergenic 45.0%
TTGGAGTTCCATAGACTGCA+AGG + chr8_2:14356790-14356809 None:intergenic 45.0%
GCATGGCTCAAGATCTTTCA+TGG - chr8_2:14356834-14356853 Msa1235960:CDS 45.0%
GGCTCAAGATCTTTCATGGA+AGG - chr8_2:14356838-14356857 Msa1235960:CDS 45.0%
CGGTGAGTTTGGCAAAATCA+AGG - chr8_2:14356897-14356916 Msa1235960:CDS 45.0%
! GGTAGCTTTACACGACTAGT+AGG + chr8_2:14357020-14357039 None:intergenic 45.0%
ATTAGGGACCTGCTAAGAAG+TGG - chr8_2:14357255-14357274 Msa1235960:intron 45.0%
TTAGGGACCTGCTAAGAAGT+GGG - chr8_2:14357256-14357275 Msa1235960:intron 45.0%
!! GAGGAAGTGCTGCTAAGTTT+GGG - chr8_2:14357278-14357297 Msa1235960:intron 45.0%
TGGAGAAGAAATTGCTCCAC+AGG - chr8_2:14357328-14357347 Msa1235960:intron 45.0%
AGAAATTGCTCCACAGGCAA+AGG - chr8_2:14357334-14357353 Msa1235960:intron 45.0%
! GCTACATTTTCCTTTGCCTG+TGG + chr8_2:14357347-14357366 None:intergenic 45.0%
TAAGGAGTCGAGTGATAAGG+AGG + chr8_2:14357629-14357648 None:intergenic 45.0%
TCCAATGCACTTCACGTGGA+AGG - chr8_2:14352561-14352580 Msa1235960:three_prime_UTR 50.0%
ACCTTCCACGTGAAGTGCAT+TGG + chr8_2:14352565-14352584 None:intergenic 50.0%
TCCCTGTGTGCTTCATTACC+TGG - chr8_2:14352713-14352732 Msa1235960:three_prime_UTR 50.0%
ACAACTCGATCCGGCTCAAA+CGG + chr8_2:14352936-14352955 None:intergenic 50.0%
TGGATCCTTTACGGACGCAA+CGG - chr8_2:14353078-14353097 Msa1235960:intron 50.0%
! TTGGAACTGAGGTTGGTCCA+TGG - chr8_2:14353545-14353564 Msa1235960:intron 50.0%
GTTGGTCCATGGAGCAAAAC+TGG - chr8_2:14353556-14353575 Msa1235960:intron 50.0%
ATAATGTGAGTCTCAGCGGC+GGG + chr8_2:14353872-14353891 None:intergenic 50.0%
TTGGTCATAACGTGGAGCGA+TGG + chr8_2:14354071-14354090 None:intergenic 50.0%
! GTCTTGGTAATCATCTCCCG+TGG + chr8_2:14354463-14354482 None:intergenic 50.0%
CGTCGCTAATGATTGGCACA+CGG - chr8_2:14355008-14355027 Msa1235960:intron 50.0%
CCAAGGCAGATTTGCATTCG+CGG - chr8_2:14355250-14355269 Msa1235960:intron 50.0%
CTAGTGTCAGGCCCAGATAA+AGG - chr8_2:14355519-14355538 Msa1235960:intron 50.0%
GACAACATTCTTCGCCGAAC+TGG - chr8_2:14355552-14355571 Msa1235960:intron 50.0%
! GAAGCACTCCAAGCAGAAGT+TGG - chr8_2:14355843-14355862 Msa1235960:intron 50.0%
CCAAGCAGAAGTTGGATTGC+CGG - chr8_2:14355851-14355870 Msa1235960:intron 50.0%
CAGCTACAAGCTATGCGCTA+CGG - chr8_2:14356265-14356284 Msa1235960:intron 50.0%
TGCATGCAGTCAGTCCAATC+TGG - chr8_2:14356360-14356379 Msa1235960:intron 50.0%
CCACCTGTTGAGGCAACAAT+TGG + chr8_2:14356543-14356562 None:intergenic 50.0%
CCAATTGTTGCCTCAACAGG+TGG - chr8_2:14356540-14356559 Msa1235960:intron 50.0%
!! TGCCTCAACAGGTGGATTAG+TGG - chr8_2:14356548-14356567 Msa1235960:intron 50.0%
GTCCACTAATCCACCTGTTG+AGG + chr8_2:14356553-14356572 None:intergenic 50.0%
TTAGTGTGACGCTGTGGATC+CGG - chr8_2:14356727-14356746 Msa1235960:CDS 50.0%
GCTATTGCATCCACATCAGC+CGG + chr8_2:14356749-14356768 None:intergenic 50.0%
ACAAAGGCCCTTGCAGTCTA+TGG - chr8_2:14356779-14356798 Msa1235960:CDS 50.0%
ACTTCCTCCCACTTCTTAGC+AGG + chr8_2:14357266-14357285 None:intergenic 50.0%
!! GGAGGAAGTGCTGCTAAGTT+TGG - chr8_2:14357277-14357296 Msa1235960:intron 50.0%
CTGCTAAGTTTGGGAGTTCC+TGG - chr8_2:14357287-14357306 Msa1235960:intron 50.0%
TCAATTCCAGGTTCACTGCC+AGG + chr8_2:14357308-14357327 None:intergenic 50.0%
GGCAGTGAACCTGGAATTGA+TGG - chr8_2:14357308-14357327 Msa1235960:intron 50.0%
ATGGAACTTCACCCCAGTGA+TGG - chr8_2:14357430-14357449 Msa1235960:intron 50.0%
TATGGCCGTTGCGTCCGTAA+AGG + chr8_2:14353086-14353105 None:intergenic 55.0%
GGTCCATGGAGCAAAACTGG+TGG - chr8_2:14353559-14353578 Msa1235960:intron 55.0%
TGGTAATCATCTCCCGTGGC+AGG + chr8_2:14354459-14354478 None:intergenic 55.0%
CCGCGAATGCAAATCTGCCT+TGG + chr8_2:14355253-14355272 None:intergenic 55.0%
GTCAGGCCCAGATAAAGGAG+TGG - chr8_2:14355524-14355543 Msa1235960:intron 55.0%
!! CTTCGCCGAACTGGTGTTAC+TGG - chr8_2:14355561-14355580 Msa1235960:intron 55.0%
CCGGCAATCCAACTTCTGCT+TGG + chr8_2:14355854-14355873 None:intergenic 55.0%
!! GCAACTCCTCTAGCCTTGTC+AGG + chr8_2:14356157-14356176 None:intergenic 55.0%
TACGGACGCAACGGCCATAG+AGG - chr8_2:14353087-14353106 Msa1235960:intron 60.0%
!! AGGCAGCTCTGGAAGCAGCA+AGG - chr8_2:14354842-14354861 Msa1235960:intron 60.0%
!! GGCAGCTCTGGAAGCAGCAA+GGG - chr8_2:14354843-14354862 Msa1235960:intron 60.0%
GGGACCTGCTAAGAAGTGGG+AGG - chr8_2:14357259-14357278 Msa1235960:intron 60.0%
GGAGTTCCTGGCAGTGAACC+TGG - chr8_2:14357299-14357318 Msa1235960:intron 60.0%
CGCTGTGGATCCGGCTGATG+TGG - chr8_2:14356736-14356755 Msa1235960:CDS 65.0%
GCTGACTGCGCGCACTCACG+AGG - chr8_2:14356432-14356451 Msa1235960:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 14352543 14357663 14352543 ID=Msa1235960;Name=Msa1235960
chr8_2 mRNA 14352543 14357663 14352543 ID=Msa1235960-mRNA-1;Parent=Msa1235960;Name=Msa1235960-mRNA-1;_AED=0.11;_eAED=0.11;_QI=200|0.86|0.93|0.93|0.86|0.75|16|258|636
chr8_2 exon 14352543 14352796 14352543 ID=Msa1235960-mRNA-1:exon:5497;Parent=Msa1235960-mRNA-1
chr8_2 exon 14352826 14352946 14352826 ID=Msa1235960-mRNA-1:exon:5496;Parent=Msa1235960-mRNA-1
chr8_2 exon 14353347 14353475 14353347 ID=Msa1235960-mRNA-1:exon:5495;Parent=Msa1235960-mRNA-1
chr8_2 exon 14353583 14353669 14353583 ID=Msa1235960-mRNA-1:exon:5494;Parent=Msa1235960-mRNA-1
chr8_2 exon 14353778 14353837 14353778 ID=Msa1235960-mRNA-1:exon:5493;Parent=Msa1235960-mRNA-1
chr8_2 exon 14353915 14354106 14353915 ID=Msa1235960-mRNA-1:exon:5492;Parent=Msa1235960-mRNA-1
chr8_2 exon 14354214 14354390 14354214 ID=Msa1235960-mRNA-1:exon:5491;Parent=Msa1235960-mRNA-1
chr8_2 exon 14354544 14354787 14354544 ID=Msa1235960-mRNA-1:exon:5490;Parent=Msa1235960-mRNA-1
chr8_2 exon 14354876 14354985 14354876 ID=Msa1235960-mRNA-1:exon:5489;Parent=Msa1235960-mRNA-1
chr8_2 exon 14355114 14355214 14355114 ID=Msa1235960-mRNA-1:exon:5488;Parent=Msa1235960-mRNA-1
chr8_2 exon 14355299 14355362 14355299 ID=Msa1235960-mRNA-1:exon:5487;Parent=Msa1235960-mRNA-1
chr8_2 exon 14355694 14355783 14355694 ID=Msa1235960-mRNA-1:exon:5486;Parent=Msa1235960-mRNA-1
chr8_2 exon 14355864 14355962 14355864 ID=Msa1235960-mRNA-1:exon:5485;Parent=Msa1235960-mRNA-1
chr8_2 exon 14356080 14356160 14356080 ID=Msa1235960-mRNA-1:exon:5484;Parent=Msa1235960-mRNA-1
chr8_2 exon 14356585 14356952 14356585 ID=Msa1235960-mRNA-1:exon:5483;Parent=Msa1235960-mRNA-1
chr8_2 exon 14357472 14357663 14357472 ID=Msa1235960-mRNA-1:exon:5482;Parent=Msa1235960-mRNA-1
chr8_2 five_prime_UTR 14357472 14357663 14357472 ID=Msa1235960-mRNA-1:five_prime_utr;Parent=Msa1235960-mRNA-1
chr8_2 five_prime_UTR 14356945 14356952 14356945 ID=Msa1235960-mRNA-1:five_prime_utr;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14356585 14356944 14356585 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14356080 14356160 14356080 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14355864 14355962 14355864 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14355694 14355783 14355694 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14355299 14355362 14355299 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14355114 14355214 14355114 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14354876 14354985 14354876 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14354544 14354787 14354544 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14354214 14354390 14354214 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14353915 14354106 14353915 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14353778 14353837 14353778 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14353583 14353669 14353583 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14353347 14353475 14353347 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 CDS 14352830 14352946 14352830 ID=Msa1235960-mRNA-1:cds;Parent=Msa1235960-mRNA-1
chr8_2 three_prime_UTR 14352826 14352829 14352826 ID=Msa1235960-mRNA-1:three_prime_utr;Parent=Msa1235960-mRNA-1
chr8_2 three_prime_UTR 14352543 14352796 14352543 ID=Msa1235960-mRNA-1:three_prime_utr;Parent=Msa1235960-mRNA-1
Gene Sequence

>Msa1235960

ATGGCAACAGTGACTGCTTCAAGCAACATAGCATCAAGAAATTCTCATATCTACCATGTCAATGTACCAACTATCTCATGTGAGTCTAAAACAGCACCGATGAGACTTGGTTCTATGAGAAAAGCCAATACACATAATGGACTCAGAATTTTGAACTCATTGGATGAGCTACTAAATAGAACTCCAATTAAAATGAAGGCAGTGAAATCAAGGAGAAAAGGTCTTCAGAGAAAGAATGTTATGCCGAAAGGTATTATAATTTGTGGCATGAATTTGATCTTTGTTGGAACTGAGGTTGGTCCATGGAGCAAAACTGGTGGTTTAGGAGATGTTCTAGGAGGTCTTCCACCAGTATTAGCAGCTAATGGACACAGAGTTATGACCATCGCTCCACGTTATGACCAATACAAAGATGCGTGGGATACAAGTGTAACAATTGAGGTAAAAGTAGGAGATAGAAAAGAAAAAGTTCGCTTCTTTCATTGCTTTAAAAGAGGAGTTGATCGCGTCTTTGTAGATCACCCTATATTTCTTGAAAAGGTTTGGGGAAAAACTGGAACAAAAATTTATGGACCTGCCACGGGAGATGATTACCAAGACAATCAACTACGTTTTAGCCTCTTCTGTCAGGCAGCTCTGGAAGCAGCAAGGGTTCTGAATCTCACGAGCAATAAATATTTCTCAGGACCATATGGTGAAGATGTCATTTTCGTCGCTAATGATTGGCACACGGCCCTTATCTCATGCTACTTGAAATCTATGTACCAGCCAAATGGCATATTTAGGAATGCCAAAGTTGTTTTTTGTATCCACAACATTGCATACCAAGGCAGATTTGCATTCGCGGACTATTCACTTCTCAATCTTCCCGACCAATTTAAAAGCTCATTCGACTTCATAGATGGGTATGTTAAACCAGTTGTTGGAAGAAAAATCAACTGGATGAAAGCTGGAATTTTAGAATCTCACCGGGTTTTAACTGTTAGTCCATACTATGCTCAAGAACTAGTGTCAGGCCCAGATAAAGGAGTGGAATTGGACAACATTCTTCGCCGAACTGGTGTTACTGGTATTGTAAATGGCATGGATGTTCAAGAGTGGAATCCATCCACTGACAAATACATAACTGTCAAATACGACGATTCGACAGTATTGGAAGGAAAAGCCCTTCTGAAAGAAGCACTCCAAGCAGAAGTTGGATTGCCGGTTGACAAAAATATTCCTCTCATTGCTTTCATTGGTAGACTTGAAGAGCAAAAAGGTTCTGATATTCTTGTAGCAGCCATTCCCCAATTTATTAAGGAGGATGTTCAGATAGTAGCCCTAGGAACAGGAAAAAAGGAAATGGAAAAGCAACTTCAACAACTTGAAATATCATATCCTGACAAGGCTAGAGGAGTTGCAAAATTCAATGTTCCCTTAGCACACATGATAATTGCAGGAGCTGATTATATATTGATTCCTAGTAGATTTGAGCCTTGTGGTCTCATTCAGCTACAAGCTATGCGCTACGGAACTTCAGTCCAATCTGGATCGTCTGAAATTGAAAACTGGACTGTCAATTTTGATGGTTCAGATGTACCAATTGTTGCCTCAACAGGTGGATTAGTGGACACAGTCAAAGAAGGTTTCACTGGATTTCAGATGGGTTCCTTCAATGTTGAATGTGACGCTGTGGATCCGGCTGATGTGGATGCAATAGCAAAGACTGTCACAAAGGCCCTTGCAGTCTATGGAACTCCAACTTTTGCAGAAATGATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGACCTGCTAAGAAGTGGGAGGAAGTGCTGCTAAGTTTGGGAGTTCCTGGCAGTGAACCTGGAATTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAATGTAGCTACTCCATGA

Protein sequence

>Msa1235960

MATVTASSNIASRNSHIYHVNVPTISCESKTAPMRLGSMRKANTHNGLRILNSLDELLNRTPIKMKAVKSRRKGLQRKNVMPKGIIICGMNLIFVGTEVGPWSKTGGLGDVLGGLPPVLAANGHRVMTIAPRYDQYKDAWDTSVTIEVKVGDRKEKVRFFHCFKRGVDRVFVDHPIFLEKVWGKTGTKIYGPATGDDYQDNQLRFSLFCQAALEAARVLNLTSNKYFSGPYGEDVIFVANDWHTALISCYLKSMYQPNGIFRNAKVVFCIHNIAYQGRFAFADYSLLNLPDQFKSSFDFIDGYVKPVVGRKINWMKAGILESHRVLTVSPYYAQELVSGPDKGVELDNILRRTGVTGIVNGMDVQEWNPSTDKYITVKYDDSTVLEGKALLKEALQAEVGLPVDKNIPLIAFIGRLEEQKGSDILVAAIPQFIKEDVQIVALGTGKKEMEKQLQQLEISYPDKARGVAKFNVPLAHMIIAGADYILIPSRFEPCGLIQLQAMRYGTSVQSGSSEIENWTVNFDGSDVPIVASTGGLVDTVKEGFTGFQMGSFNVECDAVDPADVDAIAKTVTKALAVYGTPTFAEMIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIAPQAKENVATP*