AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235990 MtrunA17_Chr8g0345941 95.126 636 11 1 1 636 1 616 0.0 1251
Msa1235990 MtrunA17_Chr1g0189131 71.022 597 149 3 41 636 35 608 0.0 857
Msa1235990 MtrunA17_Chr6g0453261 39.319 529 271 11 90 610 267 753 1.92e-112 354
Msa1235990 MtrunA17_Chr3g0126911 38.698 553 271 15 83 608 134 645 2.98e-112 351
Msa1235990 MtrunA17_Chr4g0051911 28.774 563 283 21 89 609 481 967 1.14e-51 192
Msa1235990 MtrunA17_Chr2g0288461 28.962 549 254 19 90 607 658 1101 2.13e-48 182
Msa1235990 MtrunA17_Chr5g0411441 23.593 462 285 18 89 523 190 610 4.53e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235990 AT1G32900.1 68.809 638 169 6 1 636 1 610 0.0 852
Msa1235990 AT3G01180.1 41.021 529 262 11 90 610 301 787 1.29e-114 361
Msa1235990 AT5G24300.2 38.504 548 278 14 81 608 133 641 1.70e-110 347
Msa1235990 AT5G24300.1 38.504 548 278 14 81 608 133 641 1.70e-110 347
Msa1235990 AT4G18240.1 28.929 560 282 19 89 607 541 1025 1.08e-51 192
Msa1235990 AT1G11720.1 27.757 544 272 15 90 610 594 1039 3.59e-51 191
Msa1235990 AT1G11720.2 27.757 544 272 15 90 610 646 1091 3.94e-51 191

Find 165 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACATCCTCCTTAATAAAT+TGG 0.148032 8_2:+14391514 None:intergenic
TCCAATTCCACTCCTTTATC+TGG 0.155027 8_2:+14391939 None:intergenic
AGCCATTCCCCAATTTATTA+AGG 0.277974 8_2:-14391523 Msa1235990:CDS
CTTCGCCGAACTGGTGTTAC+TGG 0.300119 8_2:-14391909 Msa1235990:CDS
AACATCCTCCTTAATAAATT+GGG 0.300262 8_2:+14391515 None:intergenic
TCATAAAGGGCACTAGCTTT+TGG 0.300486 8_2:+14394880 None:intergenic
GGAGGAAGTGCTGCTAAGTT+TGG 0.312861 8_2:-14390194 Msa1235990:CDS
CTGCTAAGTTTGGGAGTTCC+TGG 0.315078 8_2:-14390184 Msa1235990:CDS
AAGCAACACAATAATATTTC+AGG 0.322726 8_2:-14394829 Msa1235990:five_prime_UTR
ACAAAGGCCCTTGCAGTCTA+TGG 0.324992 8_2:-14390692 Msa1235990:CDS
AACAATAATCTATCATTCTT+AGG 0.334430 8_2:+14389945 None:intergenic
AGCTCATTCGACTTCATAGA+TGG 0.344129 8_2:-14392162 Msa1235990:CDS
TGGAGCAAAACTGGTGGTTT+AGG 0.348494 8_2:-14393905 Msa1235990:CDS
ACCAGCCAAATGGCATATTT+AGG 0.351605 8_2:-14392409 Msa1235990:CDS
CTCAATCTCTTGAAGGTTCA+TGG 0.355476 8_2:-14390060 Msa1235990:three_prime_UTR
GTTGAACTAATTAAGCTTCA+AGG 0.357647 8_2:+14394787 None:intergenic
TTTATCACTCTCTAGGCTAA+TGG 0.363828 8_2:-14393439 Msa1235990:intron
GATCGTCTGAAATTGAAAAC+TGG 0.364569 8_2:-14391089 Msa1235990:CDS
TCTGAGTCCATTATGTGTAT+TGG 0.365017 8_2:+14394084 None:intergenic
TGCTAGTCTCAATCTCTTGA+AGG 0.366692 8_2:-14390067 Msa1235990:intron
CCAAGCAGAAGTTGGATTGC+CGG 0.369816 8_2:-14391619 Msa1235990:CDS
GGTAGACTTGAAGAGCAAAA+AGG 0.369948 8_2:-14391564 Msa1235990:CDS
TTACATCTTTGTTCTAATCA+TGG 0.371499 8_2:+14390100 None:intergenic
GCATGGCTCAAGATCTTTCA+TGG 0.373044 8_2:-14390637 Msa1235990:CDS
TTAGTGATGTTCATTCATAA+AGG 0.375163 8_2:+14394866 None:intergenic
ACTAGTTCTTGAGCATAGTA+TGG 0.376634 8_2:+14391969 None:intergenic
ATACACAGGTTTAAATTCCT+TGG 0.380334 8_2:+14389997 None:intergenic
ATTCCTCTCATTGCTTTCAT+TGG 0.382733 8_2:-14391585 Msa1235990:CDS
CCCAGATAAAGGAGTGGAAT+TGG 0.385440 8_2:-14391940 Msa1235990:CDS
TTGATCATTTCTGCAAAAGT+TGG 0.386157 8_2:+14390665 None:intergenic
AGAAAAGCCAATACACATAA+TGG 0.386744 8_2:-14394091 Msa1235990:CDS
GGTGGTTTAGGAGATGTTCT+AGG 0.388108 8_2:-14393893 Msa1235990:CDS
ATTTCTTCTCCATCAATTCC+AGG 0.392626 8_2:+14390154 None:intergenic
TGAAATATTATTGTGTTGCT+TGG 0.403707 8_2:+14394831 None:intergenic
TATGCCATTTCTTAGGGAAC+AGG 0.404468 8_2:-14391386 Msa1235990:intron
GTACCAATTGTTGCCTCAAC+AGG 0.406492 8_2:-14390934 Msa1235990:CDS
GCATTCCTAAATATGCCATT+TGG 0.407931 8_2:+14392404 None:intergenic
ATAATCTTAACAGGCAGCTC+TGG 0.408448 8_2:-14392639 Msa1235990:intron
CCAATTCCACTCCTTTATCT+GGG 0.409765 8_2:+14391940 None:intergenic
GCAACTCCTCTAGCCTTGTC+AGG 0.409835 8_2:+14391317 None:intergenic
GGCAGTGAACCTGGAATTGA+TGG 0.411509 8_2:-14390163 Msa1235990:CDS
TAGTGATGTTCATTCATAAA+GGG 0.412225 8_2:+14394867 None:intergenic
GGAGTTCCTGGCAGTGAACC+TGG 0.416485 8_2:-14390172 Msa1235990:CDS
CTAGTGTCAGGCCCAGATAA+AGG 0.418565 8_2:-14391951 Msa1235990:CDS
CCACAAATTATAATACCTTT+CGG 0.419141 8_2:+14393965 None:intergenic
CTTGGAGTGCTTCTTTCAGA+AGG 0.419569 8_2:+14391637 None:intergenic
GGCATGAATTTGATCTTTGT+TGG 0.419673 8_2:-14393944 Msa1235990:CDS
CCGAAAGGTATTATAATTTG+TGG 0.422942 8_2:-14393965 Msa1235990:CDS
TGCCTCAACAGGTGGATTAG+TGG 0.426815 8_2:-14390923 Msa1235990:CDS
TCCCTGTGTGCTTCATTACC+TGG 0.428699 8_2:-14394757 Msa1235990:intron
TGCATGCAGTCAGTCCAATC+TGG 0.428726 8_2:-14391111 Msa1235990:intron
TATCCCACGCATCTTTGTAT+TGG 0.430966 8_2:+14393383 None:intergenic
CAATTTCAGACGATCCAGAT+TGG 0.431197 8_2:+14391097 None:intergenic
TCACCCTATATTTCTTGAAA+AGG 0.432618 8_2:-14393149 Msa1235990:intron
TTCTTTCATTGCTTTAAAAG+AGG 0.435407 8_2:-14393193 Msa1235990:CDS
GGTGTTACTGGTATTGTAAA+TGG 0.437797 8_2:-14391897 Msa1235990:CDS
AGTAAGCTTACTGCTAATAC+TGG 0.437855 8_2:+14393860 None:intergenic
CCACAAGGCTCAAATCTACT+AGG 0.441652 8_2:+14391236 None:intergenic
AAATATTTCTCAGGACCATA+TGG 0.444026 8_2:-14392584 Msa1235990:intron
CGATCGGAGTGAGCAAGTTA+AGG 0.447693 8_2:+14389827 None:intergenic
CGCTGTGGATCCGGCTGATG+TGG 0.450888 8_2:-14390735 Msa1235990:CDS
CCACCTGTTGAGGCAACAAT+TGG 0.451085 8_2:+14390931 None:intergenic
TTAGCACACATGATAATTGC+AGG 0.452499 8_2:-14391278 Msa1235990:CDS
GTTGGTCCATGGAGCAAAAC+TGG 0.452504 8_2:-14393914 Msa1235990:CDS
TGCAATTATCATGTGTGCTA+AGG 0.453551 8_2:+14391280 None:intergenic
TTAAACCTGTGTATCTAACT+TGG 0.454001 8_2:-14389988 Msa1235990:three_prime_UTR
GAGGAAGTGCTGCTAAGTTT+GGG 0.458467 8_2:-14390193 Msa1235990:CDS
ACTTATAATTACTCCATCAC+TGG 0.459353 8_2:+14390028 None:intergenic
ACCTTCCACGTGAAGTGCAT+TGG 0.462787 8_2:+14394908 None:intergenic
TTAGTGTGACGCTGTGGATC+CGG 0.465682 8_2:-14390744 Msa1235990:intron
TATTATTACTTCAACATTGA+AGG 0.465906 8_2:+14390861 None:intergenic
ACTTCCTCCCACTTCTTAGC+AGG 0.470539 8_2:+14390208 None:intergenic
TTTCAAGTAGCATGAGATAA+GGG 0.470650 8_2:+14392439 None:intergenic
CCAAGGCAGATTTGCATTCG+CGG 0.473556 8_2:-14392220 Msa1235990:CDS
CTCCTTAATAAATTGGGGAA+TGG 0.479356 8_2:+14391521 None:intergenic
GACAACATTCTTCGCCGAAC+TGG 0.480449 8_2:-14391918 Msa1235990:CDS
TGTTTATTACAGGTAAAAGT+AGG 0.480821 8_2:-14393238 Msa1235990:intron
GTTATGTATTTGTCAGTGGA+TGG 0.482006 8_2:+14391852 None:intergenic
ACAGTCAAAGAAGGTTTCAC+TGG 0.487245 8_2:-14390898 Msa1235990:CDS
AAAATCAACTGGATGAAAGC+TGG 0.487870 8_2:-14392026 Msa1235990:CDS
TTAGACTCACATGAGATAGT+TGG 0.490478 8_2:+14394142 None:intergenic
TAGAACTCCAATTAAAATGA+AGG 0.490575 8_2:-14394032 Msa1235990:CDS
ACGAGCAATAAATATTTCTC+AGG 0.491007 8_2:-14392593 Msa1235990:CDS
ATCTTTGTTGGAACTGAGGT+TGG 0.492697 8_2:-14393932 Msa1235990:CDS
AAATGAAGGCAGTGAAATCA+AGG 0.495094 8_2:-14394018 Msa1235990:CDS
TCAATTCCAGGTTCACTGCC+AGG 0.495114 8_2:+14390166 None:intergenic
AGGTTTCACTGGATTTCAGA+TGG 0.496834 8_2:-14390887 Msa1235990:CDS
AGTTAAGGAGTCGAGTGATA+AGG 0.498172 8_2:+14389842 None:intergenic
GCAGTGAAATCAAGGAGAAA+AGG 0.499059 8_2:-14394010 Msa1235990:CDS
AGGTATGTTAAACCAGTTGT+TGG 0.500872 8_2:-14392053 Msa1235990:CDS
TGGTAATCATCTCCCGTGGC+AGG 0.502745 8_2:+14393014 None:intergenic
TAAAACGTAGTTGATTGTCT+TGG 0.510188 8_2:+14392994 None:intergenic
TTGGAGTGCTTCTTTCAGAA+GGG 0.511966 8_2:+14391638 None:intergenic
TCCTAAATATGCCATTTGGC+TGG 0.513729 8_2:+14392408 None:intergenic
CCTAGTAGATTTGAGCCTTG+TGG 0.515224 8_2:-14391236 Msa1235990:CDS
CCGGCAATCCAACTTCTGCT+TGG 0.516075 8_2:+14391619 None:intergenic
AAATCTATGTACCAGCCAAA+TGG 0.518875 8_2:-14392419 Msa1235990:CDS
GCAATTATCATGTGTGCTAA+GGG 0.520362 8_2:+14391281 None:intergenic
TGGAGAAGAAATTGCTCCAC+AGG 0.521835 8_2:-14390143 Msa1235990:CDS
GAAGCACTCCAAGCAGAAGT+TGG 0.523874 8_2:-14391627 Msa1235990:CDS
ATTTCAAGTAGCATGAGATA+AGG 0.525167 8_2:+14392438 None:intergenic
GCTATTGCATCCACATCAGC+CGG 0.525934 8_2:+14390725 None:intergenic
TTGGAACTGAGGTTGGTCCA+TGG 0.530234 8_2:-14393925 Msa1235990:CDS
AGAAATTGCTCCACAGGCAA+AGG 0.537424 8_2:-14390137 Msa1235990:CDS
CCGCGAATGCAAATCTGCCT+TGG 0.538259 8_2:+14392220 None:intergenic
CTCATAGAACCAAGTCTCAT+CGG 0.538517 8_2:+14394112 None:intergenic
CAATACCAGTAACACCAGTT+CGG 0.539892 8_2:+14391904 None:intergenic
GGCAGCTCTGGAAGCAGCAA+GGG 0.542199 8_2:-14392627 Msa1235990:CDS
TATGCTCAAGAACTAGTGTC+AGG 0.557035 8_2:-14391963 Msa1235990:CDS
AAAATTTATGGACCTGCCAC+GGG 0.558373 8_2:-14393026 Msa1235990:CDS
CTTATAATTACTCCATCACT+GGG 0.560728 8_2:+14390029 None:intergenic
TTAGTGGACACAGTCAAAGA+AGG 0.561216 8_2:-14390907 Msa1235990:CDS
CCAATTGTTGCCTCAACAGG+TGG 0.561384 8_2:-14390931 Msa1235990:CDS
GGTTTCACTGGATTTCAGAT+GGG 0.561885 8_2:-14390886 Msa1235990:CDS
CATTCCCCAATTTATTAAGG+AGG 0.565255 8_2:-14391520 Msa1235990:CDS
TCCAATGCACTTCACGTGGA+AGG 0.568774 8_2:-14394909 Msa1235990:five_prime_UTR
ATGGAACTTCACCCCAGTGA+TGG 0.572735 8_2:-14390041 Msa1235990:three_prime_UTR
GGCTCAAGATCTTTCATGGA+AGG 0.575124 8_2:-14390633 Msa1235990:intron
AAAACAGCACCGATGAGACT+TGG 0.575958 8_2:-14394121 Msa1235990:CDS
TTGGAGTTCCATAGACTGCA+AGG 0.578650 8_2:+14390684 None:intergenic
ACTTTCCAAGTTAGATACAC+AGG 0.578848 8_2:+14389983 None:intergenic
ATTAGGGACCTGCTAAGAAG+TGG 0.580093 8_2:-14390216 Msa1235990:intron
CGTCGCTAATGATTGGCACA+CGG 0.584845 8_2:-14392462 Msa1235990:CDS
GGATACAAGTGTAACAATTG+AGG 0.586203 8_2:-14393365 Msa1235990:intron
TACTGGTATTGTAAATGGCA+TGG 0.587387 8_2:-14391892 Msa1235990:CDS
AGAAAGAATGTTATGCCGAA+AGG 0.592828 8_2:-14393980 Msa1235990:CDS
GACAGTTATGTATTTGTCAG+TGG 0.592989 8_2:+14391848 None:intergenic
CAGCTACAAGCTATGCGCTA+CGG 0.593914 8_2:-14391206 Msa1235990:CDS
AAGCTTACTGCTAATACTGG+TGG 0.598496 8_2:+14393863 None:intergenic
TGCCTTGGTATGCAATGTTG+TGG 0.598925 8_2:+14392235 None:intergenic
GCTCATTCGACTTCATAGAT+GGG 0.599348 8_2:-14392161 Msa1235990:intron
AGGCAGCTCTGGAAGCAGCA+AGG 0.600304 8_2:-14392628 Msa1235990:CDS
ACATCCTCCTTAATAAATTG+GGG 0.602752 8_2:+14391516 None:intergenic
TCGTCTACTCAGGTATTGGA+AGG 0.602861 8_2:-14391666 Msa1235990:intron
TTTGATCTTTGTTGGAACTG+AGG 0.607065 8_2:-14393936 Msa1235990:CDS
GTTATAAAACCTGACAGAAG+AGG 0.608463 8_2:+14392970 None:intergenic
TTGGTCATAACGTGGAGCGA+TGG 0.612220 8_2:+14393402 None:intergenic
TAAGGAGTCGAGTGATAAGG+AGG 0.617316 8_2:+14389845 None:intergenic
TTTACTTTAGTGTGACGCTG+TGG 0.621041 8_2:-14390750 Msa1235990:intron
ATGACCAATACAAAGATGCG+TGG 0.624316 8_2:-14393387 Msa1235990:CDS
TTAGGGACCTGCTAAGAAGT+GGG 0.625550 8_2:-14390215 Msa1235990:intron
TCTATCCAATGCACTTCACG+TGG 0.626245 8_2:-14394913 Msa1235990:five_prime_UTR
GTCCACTAATCCACCTGTTG+AGG 0.626982 8_2:+14390921 None:intergenic
ACCAGGTAATGAAGCACACA+GGG 0.629679 8_2:+14394756 None:intergenic
AGAAATGATCAAGAATTGCA+TGG 0.636503 8_2:-14390654 Msa1235990:CDS
ATGGCATGGATGTTCAAGAG+TGG 0.637982 8_2:-14391878 Msa1235990:CDS
TCATATCCTGACAAGGCTAG+AGG 0.641716 8_2:-14391323 Msa1235990:CDS
AACCAGGTAATGAAGCACAC+AGG 0.643692 8_2:+14394755 None:intergenic
TGACCAATACAAAGATGCGT+GGG 0.645410 8_2:-14393386 Msa1235990:CDS
TGATTGAATTTGAAGGTTTG+GGG 0.645543 8_2:-14393062 Msa1235990:intron
TGAAATATCATATCCTGACA+AGG 0.646436 8_2:-14391330 Msa1235990:CDS
GGTTTAGGAGATGTTCTAGG+AGG 0.652378 8_2:-14393890 Msa1235990:CDS
TGGAGTTCCATAGACTGCAA+GGG 0.653724 8_2:+14390685 None:intergenic
CTACCAATGAAAGCAATGAG+AGG 0.658131 8_2:+14391582 None:intergenic
GTCTTGGTAATCATCTCCCG+TGG 0.663295 8_2:+14393010 None:intergenic
AGATAGTTGGTACATTGACA+TGG 0.665294 8_2:+14394155 None:intergenic
TCTTTGTATTGGTCATAACG+TGG 0.669620 8_2:+14393394 None:intergenic
GTCAGGCCCAGATAAAGGAG+TGG 0.669932 8_2:-14391946 Msa1235990:CDS
TGTAGCTGAATGAGACCACA+AGG 0.671420 8_2:+14391221 None:intergenic
GGTCCATGGAGCAAAACTGG+TGG 0.674393 8_2:-14393911 Msa1235990:CDS
AATAGCAAAGACTGTCACAA+AGG 0.677740 8_2:-14390708 Msa1235990:CDS
ATCCACAACATTGCATACCA+AGG 0.683894 8_2:-14392237 Msa1235990:CDS
ATGGACTAACAGTTAAAACC+CGG 0.694472 8_2:+14391988 None:intergenic
GGGACCTGCTAAGAAGTGGG+AGG 0.697968 8_2:-14390212 Msa1235990:CDS
TTATAATTACTCCATCACTG+GGG 0.837604 8_2:+14390030 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTGTATTTTTTTTAAA+CGG - chr8_2:14394836-14394855 Msa1235990:five_prime_UTR 10.0%
!! TTGGTAAAAAATAAAGTTTA+AGG + chr8_2:14390064-14390083 None:intergenic 15.0%
!!! TAAAATAAAACTTGCTTAAA+TGG + chr8_2:14390160-14390179 None:intergenic 15.0%
!!! TTATTTTTCAGTATAAAAGA+TGG - chr8_2:14390530-14390549 Msa1235990:intron 15.0%
!! TTTAAGAAACAATAAGATAA+TGG + chr8_2:14393984-14394003 None:intergenic 15.0%
!!! TATTTTTTACCAAAGTTTAG+TGG - chr8_2:14390071-14390090 Msa1235990:intron 20.0%
!! TTAATCTAACAATTGACATT+TGG + chr8_2:14390300-14390319 None:intergenic 20.0%
!! AATTTGAACTATAGAGAATT+TGG - chr8_2:14390419-14390438 Msa1235990:intron 20.0%
!! TTAATGATGATTGAATTTGA+AGG - chr8_2:14391688-14391707 Msa1235990:intron 20.0%
!! AAAACTGGAACAAAAATTTA+TGG - chr8_2:14391719-14391738 Msa1235990:intron 20.0%
!! AAAATGACAAAGGAAAAATT+AGG + chr8_2:14392085-14392104 None:intergenic 20.0%
!! ATAGTCATAAATGAAATTCT+TGG - chr8_2:14392204-14392223 Msa1235990:CDS 20.0%
!! TACAAAAAACAACCTAATAA+TGG + chr8_2:14392501-14392520 None:intergenic 20.0%
!! CATCATTATTATACTTACTA+GGG + chr8_2:14393278-14393297 None:intergenic 20.0%
!! TATTATTACTTCAACATTGA+AGG + chr8_2:14393899-14393918 None:intergenic 20.0%
!!! TGAATTTTGTTTTGGAATTA+GGG - chr8_2:14394525-14394544 Msa1235990:intron 20.0%
!! AACAATAATCTATCATTCTT+AGG + chr8_2:14394815-14394834 None:intergenic 20.0%
! TAGTGATGTTCATTCATAAA+GGG + chr8_2:14389893-14389912 None:intergenic 25.0%
! TTAGTGATGTTCATTCATAA+AGG + chr8_2:14389894-14389913 None:intergenic 25.0%
!! TGAAATATTATTGTGTTGCT+TGG + chr8_2:14389929-14389948 None:intergenic 25.0%
! AAGCAACACAATAATATTTC+AGG - chr8_2:14389928-14389947 Msa1235990:three_prime_UTR 25.0%
!! TAAGGCATCAAATTTGAAAT+TGG + chr8_2:14390046-14390065 None:intergenic 25.0%
! TAATTAACACCACTAAACTT+TGG + chr8_2:14390083-14390102 None:intergenic 25.0%
!!! TAAAGTCAAATGTTTGTTGT+TGG + chr8_2:14390324-14390343 None:intergenic 25.0%
! TAGAACTCCAATTAAAATGA+AGG - chr8_2:14390725-14390744 Msa1235990:CDS 25.0%
! CCACAAATTATAATACCTTT+CGG + chr8_2:14390795-14390814 None:intergenic 25.0%
! TCTACGTTGTAAATTATGAT+TGG - chr8_2:14391040-14391059 Msa1235990:intron 25.0%
!! ACAATGAAAACATTTTGTCA+AGG + chr8_2:14391428-14391447 None:intergenic 25.0%
! TATTGCAATCTGTTTATTAC+AGG - chr8_2:14391509-14391528 Msa1235990:CDS 25.0%
! TGTTTATTACAGGTAAAAGT+AGG - chr8_2:14391519-14391538 Msa1235990:CDS 25.0%
!!! TTCTTTCATTGCTTTAAAAG+AGG - chr8_2:14391564-14391583 Msa1235990:CDS 25.0%
!!! TCACCTTTTCAAGAAATATA+GGG + chr8_2:14391614-14391633 None:intergenic 25.0%
! ATGATTGAATTTGAAGGTTT+GGG - chr8_2:14391694-14391713 Msa1235990:intron 25.0%
! TAAACAACATTGTAACCAAA+GGG + chr8_2:14391818-14391837 None:intergenic 25.0%
!! GTAGCTTTTTATATTGTCTA+AGG - chr8_2:14391854-14391873 Msa1235990:CDS 25.0%
! ATGAAATTCTTGGAAACAAA+TGG - chr8_2:14392214-14392233 Msa1235990:CDS 25.0%
! TTATGTTGTTCTAATCTTGT+AGG - chr8_2:14392684-14392703 Msa1235990:intron 25.0%
! AACATCCTCCTTAATAAATT+GGG + chr8_2:14393245-14393264 None:intergenic 25.0%
! CCATCATTATTATACTTACT+AGG + chr8_2:14393279-14393298 None:intergenic 25.0%
! CCTAGTAAGTATAATAATGA+TGG - chr8_2:14393276-14393295 Msa1235990:intron 25.0%
! ATCCTTTCTTACTTCATTAA+AGG - chr8_2:14393323-14393342 Msa1235990:intron 25.0%
! TTCCTTTAATGAAGTAAGAA+AGG + chr8_2:14393328-14393347 None:intergenic 25.0%
!! AATATGTTATGCCATTTCTT+AGG - chr8_2:14393364-14393383 Msa1235990:intron 25.0%
!! ATATGTTATGCCATTTCTTA+GGG - chr8_2:14393365-14393384 Msa1235990:intron 25.0%
! AAATTATTGAGGAAGTCTTA+TGG + chr8_2:14393778-14393797 None:intergenic 25.0%
! AAATGTGAGACAAATTATTG+AGG + chr8_2:14393789-14393808 None:intergenic 25.0%
!!! TCACATTTTTTACTTCAACT+AGG - chr8_2:14393801-14393820 Msa1235990:intron 25.0%
!! TTTAGTGCATTTTAGATTGA+CGG - chr8_2:14394163-14394182 Msa1235990:CDS 25.0%
!!! TGTATCCTAATTTTTTTCGT+AGG + chr8_2:14394366-14394385 None:intergenic 25.0%
!!! TGAGTAACTGAATTTTGTTT+TGG - chr8_2:14394517-14394536 Msa1235990:intron 25.0%
!!! CTGAATTTTGTTTTGGAATT+AGG - chr8_2:14394524-14394543 Msa1235990:intron 25.0%
! TTACATCTTTGTTCTAATCA+TGG + chr8_2:14394660-14394679 None:intergenic 25.0%
! ATGATTAGAACAAAGATGTA+AGG - chr8_2:14394659-14394678 Msa1235990:intron 25.0%
! TGATTAGAACAAAGATGTAA+GGG - chr8_2:14394660-14394679 Msa1235990:intron 25.0%
!! ATTATAAGTGCATTTTTCCA+AGG - chr8_2:14394743-14394762 Msa1235990:intron 25.0%
!!! ATTGTCAATTTTTTATGCTG+AGG - chr8_2:14394870-14394889 Msa1235990:five_prime_UTR 25.0%
!!! TTGTCAATTTTTTATGCTGA+GGG - chr8_2:14394871-14394890 Msa1235990:five_prime_UTR 25.0%
GTTGAACTAATTAAGCTTCA+AGG + chr8_2:14389973-14389992 None:intergenic 30.0%
CTATAATATACTAGCTAACC+AGG + chr8_2:14390021-14390040 None:intergenic 30.0%
GTACAAATTAGGATTCTCTA+TGG - chr8_2:14390241-14390260 Msa1235990:intron 30.0%
GAACTATAGAGAATTTGGAA+TGG - chr8_2:14390424-14390443 Msa1235990:intron 30.0%
ATAATTTCACAAGTGATGAG+AGG - chr8_2:14390468-14390487 Msa1235990:intron 30.0%
TGAAACTTCAAATCTAAGTC+TGG - chr8_2:14390492-14390511 Msa1235990:intron 30.0%
AGAAAAGCCAATACACATAA+TGG - chr8_2:14390666-14390685 Msa1235990:CDS 30.0%
! ACTCAGAATTTTGAACTCAT+TGG - chr8_2:14390689-14390708 Msa1235990:CDS 30.0%
!! TTCACTGCCTTCATTTTAAT+TGG + chr8_2:14390735-14390754 None:intergenic 30.0%
!! CCGAAAGGTATTATAATTTG+TGG - chr8_2:14390792-14390811 Msa1235990:intron 30.0%
TCCAACACATTAGTTACAAT+CGG + chr8_2:14391207-14391226 None:intergenic 30.0%
TCTCTAATTTATCACTCTCT+AGG - chr8_2:14391311-14391330 Msa1235990:CDS 30.0%
TAACTATAGCATAGCACAAT+TGG + chr8_2:14391480-14391499 None:intergenic 30.0%
TCACCCTATATTTCTTGAAA+AGG - chr8_2:14391608-14391627 Msa1235990:CDS 30.0%
!! CTCACCTTTTCAAGAAATAT+AGG + chr8_2:14391615-14391634 None:intergenic 30.0%
GATGATTGAATTTGAAGGTT+TGG - chr8_2:14391693-14391712 Msa1235990:intron 30.0%
TGATTGAATTTGAAGGTTTG+GGG - chr8_2:14391695-14391714 Msa1235990:intron 30.0%
TAAAACGTAGTTGATTGTCT+TGG + chr8_2:14391766-14391785 None:intergenic 30.0%
! GTTTTATAACCATATCCCTT+TGG - chr8_2:14391800-14391819 Msa1235990:intron 30.0%
GTAAACAACATTGTAACCAA+AGG + chr8_2:14391819-14391838 None:intergenic 30.0%
AGACTGTGATTTACTGTTAA+AGG + chr8_2:14391966-14391985 None:intergenic 30.0%
CAAGGGAAAAAAAATGACAA+AGG + chr8_2:14392095-14392114 None:intergenic 30.0%
!!! CTTTGTCATTTTTTTTCCCT+TGG - chr8_2:14392093-14392112 Msa1235990:intron 30.0%
CCTGTTAAGATTATTTCCAA+GGG + chr8_2:14392112-14392131 None:intergenic 30.0%
ACGAGCAATAAATATTTCTC+AGG - chr8_2:14392164-14392183 Msa1235990:CDS 30.0%
AAATATTTCTCAGGACCATA+TGG - chr8_2:14392173-14392192 Msa1235990:CDS 30.0%
TGACTATAGTTCATACCATA+TGG + chr8_2:14392191-14392210 None:intergenic 30.0%
!!! ATGTTTTGATTTTCGTATGC+AGG - chr8_2:14392257-14392276 Msa1235990:intron 30.0%
! TTTCAAGTAGCATGAGATAA+GGG + chr8_2:14392321-14392340 None:intergenic 30.0%
! ATTTCAAGTAGCATGAGATA+AGG + chr8_2:14392322-14392341 None:intergenic 30.0%
ATATTTAGGAATGCCAAAGT+AGG - chr8_2:14392362-14392381 Msa1235990:intron 30.0%
AGTTCTTCAAACTTTCTTTC+TGG - chr8_2:14392469-14392488 Msa1235990:CDS 30.0%
! AATGAGCTTTTAAATTGGTC+GGG + chr8_2:14392583-14392602 None:intergenic 30.0%
! GAATGAGCTTTTAAATTGGT+CGG + chr8_2:14392584-14392603 None:intergenic 30.0%
! AGTCGAATGAGCTTTTAAAT+TGG + chr8_2:14392588-14392607 None:intergenic 30.0%
! TTGATTTTTCTTCCAACAAC+TGG + chr8_2:14392719-14392738 None:intergenic 30.0%
TTGTTGGAAGAAAAATCAAC+TGG - chr8_2:14392720-14392739 Msa1235990:intron 30.0%
!! AGAGGAATATTTTTGTCAAC+CGG + chr8_2:14393160-14393179 None:intergenic 30.0%
ACATCCTCCTTAATAAATTG+GGG + chr8_2:14393244-14393263 None:intergenic 30.0%
GAACATCCTCCTTAATAAAT+TGG + chr8_2:14393246-14393265 None:intergenic 30.0%
TGAAATATCATATCCTGACA+AGG - chr8_2:14393427-14393446 Msa1235990:CDS 30.0%
GACACATTTGCATTAAATGA+AGG + chr8_2:14393933-14393952 None:intergenic 30.0%
TTAATGCAAATGTGTCCATA+CGG - chr8_2:14393937-14393956 Msa1235990:CDS 30.0%
TTACTACTTAATCTACCGTA+TGG + chr8_2:14393955-14393974 None:intergenic 30.0%
TTGATCATTTCTGCAAAAGT+TGG + chr8_2:14394095-14394114 None:intergenic 30.0%
AGAAATGATCAAGAATTGCA+TGG - chr8_2:14394103-14394122 Msa1235990:CDS 30.0%
! TTTTAGCAAAAGTTACAGTC+TGG + chr8_2:14394233-14394252 None:intergenic 30.0%
AAAACTACTAAGTGCATGTT+TGG + chr8_2:14394275-14394294 None:intergenic 30.0%
GATAGCCTACGAAAAAAATT+AGG - chr8_2:14394358-14394377 Msa1235990:intron 30.0%
CTATTTGGATAAACTTGTCA+TGG + chr8_2:14394475-14394494 None:intergenic 30.0%
CATGACAAGTTTATCCAAAT+AGG - chr8_2:14394473-14394492 Msa1235990:intron 30.0%
! GGATAAATTTAGAGCCTATT+TGG + chr8_2:14394490-14394509 None:intergenic 30.0%
AATTCAGTTACTCAGTTGAT+GGG + chr8_2:14394511-14394530 None:intergenic 30.0%
AAATTCAGTTACTCAGTTGA+TGG + chr8_2:14394512-14394531 None:intergenic 30.0%
TTATAATTACTCCATCACTG+GGG + chr8_2:14394730-14394749 None:intergenic 30.0%
CTTATAATTACTCCATCACT+GGG + chr8_2:14394731-14394750 None:intergenic 30.0%
ACTTATAATTACTCCATCAC+TGG + chr8_2:14394732-14394751 None:intergenic 30.0%
ATACACAGGTTTAAATTCCT+TGG + chr8_2:14394763-14394782 None:intergenic 30.0%
TTAAACCTGTGTATCTAACT+TGG - chr8_2:14394769-14394788 Msa1235990:five_prime_UTR 30.0%
! CTAATTTGTACAACTCGATC+CGG + chr8_2:14390232-14390251 None:intergenic 35.0%
ATTTCCTTGTAGCTTGGATT+TGG + chr8_2:14390402-14390421 None:intergenic 35.0%
GTTCAAATTTCCTTGTAGCT+TGG + chr8_2:14390408-14390427 None:intergenic 35.0%
AACTTCAAATCTAAGTCTGG+TGG - chr8_2:14390495-14390514 Msa1235990:intron 35.0%
! AGATAGTTGGTACATTGACA+TGG + chr8_2:14390605-14390624 None:intergenic 35.0%
TTAGACTCACATGAGATAGT+TGG + chr8_2:14390618-14390637 None:intergenic 35.0%
TCTGAGTCCATTATGTGTAT+TGG + chr8_2:14390676-14390695 None:intergenic 35.0%
AAATGAAGGCAGTGAAATCA+AGG - chr8_2:14390739-14390758 Msa1235990:CDS 35.0%
AGAAAGAATGTTATGCCGAA+AGG - chr8_2:14390777-14390796 Msa1235990:intron 35.0%
GGCATGAATTTGATCTTTGT+TGG - chr8_2:14390813-14390832 Msa1235990:intron 35.0%
TTTGATCTTTGTTGGAACTG+AGG - chr8_2:14390821-14390840 Msa1235990:intron 35.0%
AGTAAGCTTACTGCTAATAC+TGG + chr8_2:14390900-14390919 None:intergenic 35.0%
TAGCAGTAAGCTTACTGTTA+TGG - chr8_2:14390904-14390923 Msa1235990:CDS 35.0%
CCAACACATTAGTTACAATC+GGG + chr8_2:14391206-14391225 None:intergenic 35.0%
TCTGTAGTGGTTGACATATT+TGG - chr8_2:14391262-14391281 Msa1235990:CDS 35.0%
TTTATCACTCTCTAGGCTAA+TGG - chr8_2:14391318-14391337 Msa1235990:CDS 35.0%
! TCTTTGTATTGGTCATAACG+TGG + chr8_2:14391366-14391385 None:intergenic 35.0%
GGATACAAGTGTAACAATTG+AGG - chr8_2:14391392-14391411 Msa1235990:intron 35.0%
CATTGTAATCTTCATTGCAC+AGG - chr8_2:14391442-14391461 Msa1235990:intron 35.0%
AAAAATTTATGGACCTGCCA+CGG - chr8_2:14391730-14391749 Msa1235990:intron 35.0%
GTTATAAAACCTGACAGAAG+AGG + chr8_2:14391790-14391809 None:intergenic 35.0%
ACATTGTAACCAAAGGGATA+TGG + chr8_2:14391812-14391831 None:intergenic 35.0%
CCCTTGGAAATAATCTTAAC+AGG - chr8_2:14392109-14392128 Msa1235990:intron 35.0%
GCCTGTTAAGATTATTTCCA+AGG + chr8_2:14392113-14392132 None:intergenic 35.0%
! TCATTTTCGTCGCTAATGAT+TGG - chr8_2:14392288-14392307 Msa1235990:intron 35.0%
AAATCTATGTACCAGCCAAA+TGG - chr8_2:14392338-14392357 Msa1235990:intron 35.0%
GCATTCCTAAATATGCCATT+TGG + chr8_2:14392356-14392375 None:intergenic 35.0%
AATGCCAAAGTAGGTCTAAA+TGG - chr8_2:14392371-14392390 Msa1235990:intron 35.0%
! TTCTGGTTGCTACCATTATT+AGG - chr8_2:14392486-14392505 Msa1235990:intron 35.0%
AGGTATGTTAAACCAGTTGT+TGG - chr8_2:14392704-14392723 Msa1235990:intron 35.0%
AAAATCAACTGGATGAAAGC+TGG - chr8_2:14392731-14392750 Msa1235990:intron 35.0%
!!! CTGGAATTTTAGAATCTCAC+CGG - chr8_2:14392750-14392769 Msa1235990:intron 35.0%
!!! TGGAATTTTAGAATCTCACC+GGG - chr8_2:14392751-14392770 Msa1235990:intron 35.0%
! ATGGACTAACAGTTAAAACC+CGG + chr8_2:14392772-14392791 None:intergenic 35.0%
! ACTAGTTCTTGAGCATAGTA+TGG + chr8_2:14392791-14392810 None:intergenic 35.0%
!! GGTGTTACTGGTATTGTAAA+TGG - chr8_2:14392860-14392879 Msa1235990:intron 35.0%
TACTGGTATTGTAAATGGCA+TGG - chr8_2:14392865-14392884 Msa1235990:intron 35.0%
GTTATGTATTTGTCAGTGGA+TGG + chr8_2:14392908-14392927 None:intergenic 35.0%
GACAGTTATGTATTTGTCAG+TGG + chr8_2:14392912-14392931 None:intergenic 35.0%
!! AGTTTCTCTAAAATGTGTCG+TGG - chr8_2:14392976-14392995 Msa1235990:intron 35.0%
ATTCCTCTCATTGCTTTCAT+TGG - chr8_2:14393172-14393191 Msa1235990:CDS 35.0%
AGCCATTCCCCAATTTATTA+AGG - chr8_2:14393234-14393253 Msa1235990:intron 35.0%
CTCCTTAATAAATTGGGGAA+TGG + chr8_2:14393239-14393258 None:intergenic 35.0%
CATTCCCCAATTTATTAAGG+AGG - chr8_2:14393237-14393256 Msa1235990:intron 35.0%
! TTTTCCTGTTCCCTAAGAAA+TGG + chr8_2:14393378-14393397 None:intergenic 35.0%
TTCTTAGGGAACAGGAAAAA+AGG - chr8_2:14393379-14393398 Msa1235990:CDS 35.0%
GCAATTATCATGTGTGCTAA+GGG + chr8_2:14393479-14393498 None:intergenic 35.0%
TGCAATTATCATGTGTGCTA+AGG + chr8_2:14393480-14393499 None:intergenic 35.0%
TTAGCACACATGATAATTGC+AGG - chr8_2:14393479-14393498 Msa1235990:intron 35.0%
CACTACATACAATCCAAATC+TGG + chr8_2:14393622-14393641 None:intergenic 35.0%
! GATCGTCTGAAATTGAAAAC+TGG - chr8_2:14393668-14393687 Msa1235990:intron 35.0%
! AACTGGACTGTCAATTTTGA+TGG - chr8_2:14393685-14393704 Msa1235990:intron 35.0%
! TTATTGAGGAAGTCTTATGG+CGG + chr8_2:14393775-14393794 None:intergenic 35.0%
ATTAAATGAAGGCTGCTGTT+AGG + chr8_2:14393922-14393941 None:intergenic 35.0%
AATAGCAAAGACTGTCACAA+AGG - chr8_2:14394049-14394068 Msa1235990:CDS 35.0%
! TTTTAGATTGACGGTGAGTT+TGG - chr8_2:14394172-14394191 Msa1235990:CDS 35.0%
ATTTCTTCTCCATCAATTCC+AGG + chr8_2:14394606-14394625 None:intergenic 35.0%
ACTTTCCAAGTTAGATACAC+AGG + chr8_2:14394777-14394796 None:intergenic 35.0%
!!! AATTTTTTATGCTGAGGGTG+AGG - chr8_2:14394876-14394895 Msa1235990:five_prime_UTR 35.0%
!!! TCATAAAGGGCACTAGCTTT+TGG + chr8_2:14389880-14389899 None:intergenic 40.0%
! CGGATCGAGTTGTACAAATT+AGG - chr8_2:14390230-14390249 Msa1235990:intron 40.0%
TAAAGAGAGCTGCAAGAACA+TGG - chr8_2:14390345-14390364 Msa1235990:intron 40.0%
GCAAGAACATGGATCCTTTA+CGG - chr8_2:14390356-14390375 Msa1235990:intron 40.0%
CTCATAGAACCAAGTCTCAT+CGG + chr8_2:14390648-14390667 None:intergenic 40.0%
GCAGTGAAATCAAGGAGAAA+AGG - chr8_2:14390747-14390766 Msa1235990:intron 40.0%
ATCTTTGTTGGAACTGAGGT+TGG - chr8_2:14390825-14390844 Msa1235990:intron 40.0%
AAGCTTACTGCTAATACTGG+TGG + chr8_2:14390897-14390916 None:intergenic 40.0%
CTGAATAATGTGAGTCTCAG+CGG + chr8_2:14391163-14391182 None:intergenic 40.0%
TGAGACTCACATTATTCAGC+AGG - chr8_2:14391164-14391183 Msa1235990:intron 40.0%
CCCGATTGTAACTAATGTGT+TGG - chr8_2:14391203-14391222 Msa1235990:CDS 40.0%
CTGATAGCATTTCTCTGTAG+TGG - chr8_2:14391249-14391268 Msa1235990:CDS 40.0%
ATGACCAATACAAAGATGCG+TGG - chr8_2:14391370-14391389 Msa1235990:CDS 40.0%
TGACCAATACAAAGATGCGT+GGG - chr8_2:14391371-14391390 Msa1235990:CDS 40.0%
TATCCCACGCATCTTTGTAT+TGG + chr8_2:14391377-14391396 None:intergenic 40.0%
TTGAAGGTTTGGGGAAAAAC+TGG - chr8_2:14391704-14391723 Msa1235990:intron 40.0%
AAAATTTATGGACCTGCCAC+GGG - chr8_2:14391731-14391750 Msa1235990:intron 40.0%
ATAATCTTAACAGGCAGCTC+TGG - chr8_2:14392118-14392137 Msa1235990:intron 40.0%
ACCAGCCAAATGGCATATTT+AGG - chr8_2:14392348-14392367 Msa1235990:intron 40.0%
! TCCTAAATATGCCATTTGGC+TGG + chr8_2:14392352-14392371 None:intergenic 40.0%
! GTTGCCATTTAGACCTACTT+TGG + chr8_2:14392378-14392397 None:intergenic 40.0%
ATCCACAACATTGCATACCA+AGG - chr8_2:14392520-14392539 Msa1235990:intron 40.0%
AGCTCATTCGACTTCATAGA+TGG - chr8_2:14392595-14392614 Msa1235990:CDS 40.0%
GCTCATTCGACTTCATAGAT+GGG - chr8_2:14392596-14392615 Msa1235990:CDS 40.0%
TATGCTCAAGAACTAGTGTC+AGG - chr8_2:14392794-14392813 Msa1235990:intron 40.0%
CCAATTCCACTCCTTTATCT+GGG + chr8_2:14392820-14392839 None:intergenic 40.0%
TCCAATTCCACTCCTTTATC+TGG + chr8_2:14392821-14392840 None:intergenic 40.0%
CAATACCAGTAACACCAGTT+CGG + chr8_2:14392856-14392875 None:intergenic 40.0%
TTTAACTAGCTCGTCTACTC+AGG - chr8_2:14393081-14393100 Msa1235990:intron 40.0%
! TTGGAGTGCTTCTTTCAGAA+GGG + chr8_2:14393122-14393141 None:intergenic 40.0%
CTACCAATGAAAGCAATGAG+AGG + chr8_2:14393178-14393197 None:intergenic 40.0%
GGTAGACTTGAAGAGCAAAA+AGG - chr8_2:14393193-14393212 Msa1235990:CDS 40.0%
! TATGCCATTTCTTAGGGAAC+AGG - chr8_2:14393371-14393390 Msa1235990:CDS 40.0%
GGGAACAGGAAAAAAGGAAA+TGG - chr8_2:14393385-14393404 Msa1235990:CDS 40.0%
AGGAAAGGATTGTGTGAAGT+AGG + chr8_2:14393589-14393608 None:intergenic 40.0%
TTCACACAATCCTTTCCTAG+TGG - chr8_2:14393591-14393610 Msa1235990:intron 40.0%
TCTGGAAAAACCACTAGGAA+AGG + chr8_2:14393604-14393623 None:intergenic 40.0%
CCAAATCTGGAAAAACCACT+AGG + chr8_2:14393609-14393628 None:intergenic 40.0%
! CCTAGTGGTTTTTCCAGATT+TGG - chr8_2:14393606-14393625 Msa1235990:intron 40.0%
CAATTTCAGACGATCCAGAT+TGG + chr8_2:14393663-14393682 None:intergenic 40.0%
! GAAGTCTTATGGCGGAAAAT+CGG + chr8_2:14393767-14393786 None:intergenic 40.0%
! TTAGTGGACACAGTCAAAGA+AGG - chr8_2:14393850-14393869 Msa1235990:intron 40.0%
ACAGTCAAAGAAGGTTTCAC+TGG - chr8_2:14393859-14393878 Msa1235990:intron 40.0%
AGGTTTCACTGGATTTCAGA+TGG - chr8_2:14393870-14393889 Msa1235990:intron 40.0%
GGTTTCACTGGATTTCAGAT+GGG - chr8_2:14393871-14393890 Msa1235990:CDS 40.0%
TTTACTTTAGTGTGACGCTG+TGG - chr8_2:14394007-14394026 Msa1235990:CDS 40.0%
TGAGTTTGGCAAAATCAAGG+TGG - chr8_2:14394186-14394205 Msa1235990:CDS 40.0%
CTGGAGCTTCAACAAAATCA+CGG + chr8_2:14394214-14394233 None:intergenic 40.0%
! TGCTAGTCTCAATCTCTTGA+AGG - chr8_2:14394690-14394709 Msa1235990:intron 40.0%
CTCAATCTCTTGAAGGTTCA+TGG - chr8_2:14394697-14394716 Msa1235990:intron 40.0%
AGTTAAGGAGTCGAGTGATA+AGG + chr8_2:14394918-14394937 None:intergenic 40.0%
TCTATCCAATGCACTTCACG+TGG - chr8_2:14389844-14389863 Msa1235990:three_prime_UTR 45.0%
ACCAGGTAATGAAGCACACA+GGG + chr8_2:14390004-14390023 None:intergenic 45.0%
AACCAGGTAATGAAGCACAC+AGG + chr8_2:14390005-14390024 None:intergenic 45.0%
TTGAATATCGCCGTTTGAGC+CGG - chr8_2:14390210-14390229 Msa1235990:CDS 45.0%
GCTTGGATTTGGATCCTCTA+TGG + chr8_2:14390391-14390410 None:intergenic 45.0%
GGATCCAAATCCAAGCTACA+AGG - chr8_2:14390395-14390414 Msa1235990:intron 45.0%
!! AAAACAGCACCGATGAGACT+TGG - chr8_2:14390636-14390655 Msa1235990:CDS 45.0%
! AAACCACCAGTTTTGCTCCA+TGG + chr8_2:14390852-14390871 None:intergenic 45.0%
TGGAGCAAAACTGGTGGTTT+AGG - chr8_2:14390852-14390871 Msa1235990:intron 45.0%
GGTGGTTTAGGAGATGTTCT+AGG - chr8_2:14390864-14390883 Msa1235990:intron 45.0%
! GGTTTAGGAGATGTTCTAGG+AGG - chr8_2:14390867-14390886 Msa1235990:intron 45.0%
AATAATGTGAGTCTCAGCGG+CGG + chr8_2:14391160-14391179 None:intergenic 45.0%
!! ACGTTTTAGCCTCTTCTGTC+AGG - chr8_2:14391778-14391797 Msa1235990:intron 45.0%
! ATTGTCTAAGGTGCAGCTCA+CGG - chr8_2:14391866-14391885 Msa1235990:CDS 45.0%
AGCTCACGGAGAGAAATTTG+TGG - chr8_2:14391880-14391899 Msa1235990:CDS 45.0%
TGCCTTGGTATGCAATGTTG+TGG + chr8_2:14392525-14392544 None:intergenic 45.0%
CCCAGATAAAGGAGTGGAAT+TGG - chr8_2:14392817-14392836 Msa1235990:intron 45.0%
ATGGCATGGATGTTCAAGAG+TGG - chr8_2:14392879-14392898 Msa1235990:intron 45.0%
CGACGATTCGACAGTAAGAA+TGG - chr8_2:14392937-14392956 Msa1235990:intron 45.0%
TAGCTCGTCTACTCAGGTAT+TGG - chr8_2:14393087-14393106 Msa1235990:intron 45.0%
!! TCGTCTACTCAGGTATTGGA+AGG - chr8_2:14393091-14393110 Msa1235990:intron 45.0%
! CTTGGAGTGCTTCTTTCAGA+AGG + chr8_2:14393123-14393142 None:intergenic 45.0%
TCATATCCTGACAAGGCTAG+AGG - chr8_2:14393434-14393453 Msa1235990:intron 45.0%
CCACAAGGCTCAAATCTACT+AGG + chr8_2:14393524-14393543 None:intergenic 45.0%
CCTAGTAGATTTGAGCCTTG+TGG - chr8_2:14393521-14393540 Msa1235990:intron 45.0%
TGTAGCTGAATGAGACCACA+AGG + chr8_2:14393539-14393558 None:intergenic 45.0%
GTACCAATTGTTGCCTCAAC+AGG - chr8_2:14393823-14393842 Msa1235990:intron 45.0%
TGGAGTTCCATAGACTGCAA+GGG + chr8_2:14394075-14394094 None:intergenic 45.0%
TTGGAGTTCCATAGACTGCA+AGG + chr8_2:14394076-14394095 None:intergenic 45.0%
GCATGGCTCAAGATCTTTCA+TGG - chr8_2:14394120-14394139 Msa1235990:CDS 45.0%
GGCTCAAGATCTTTCATGGA+AGG - chr8_2:14394124-14394143 Msa1235990:CDS 45.0%
CGGTGAGTTTGGCAAAATCA+AGG - chr8_2:14394183-14394202 Msa1235990:CDS 45.0%
! GGTAGCTTTACACGACTAGT+AGG + chr8_2:14394306-14394325 None:intergenic 45.0%
ATTAGGGACCTGCTAAGAAG+TGG - chr8_2:14394541-14394560 Msa1235990:intron 45.0%
TTAGGGACCTGCTAAGAAGT+GGG - chr8_2:14394542-14394561 Msa1235990:intron 45.0%
!! GAGGAAGTGCTGCTAAGTTT+GGG - chr8_2:14394564-14394583 Msa1235990:intron 45.0%
TGGAGAAGAAATTGCTCCAC+AGG - chr8_2:14394614-14394633 Msa1235990:intron 45.0%
AGAAATTGCTCCACAGGCAA+AGG - chr8_2:14394620-14394639 Msa1235990:intron 45.0%
! GCTACATTTTCCTTTGCCTG+TGG + chr8_2:14394633-14394652 None:intergenic 45.0%
TAAGGAGTCGAGTGATAAGG+AGG + chr8_2:14394915-14394934 None:intergenic 45.0%
TCCAATGCACTTCACGTGGA+AGG - chr8_2:14389848-14389867 Msa1235990:three_prime_UTR 50.0%
ACCTTCCACGTGAAGTGCAT+TGG + chr8_2:14389852-14389871 None:intergenic 50.0%
TCCCTGTGTGCTTCATTACC+TGG - chr8_2:14390000-14390019 Msa1235990:three_prime_UTR 50.0%
ACAACTCGATCCGGCTCAAA+CGG + chr8_2:14390223-14390242 None:intergenic 50.0%
TGGATCCTTTACGGACGCAA+CGG - chr8_2:14390365-14390384 Msa1235990:intron 50.0%
! TTGGAACTGAGGTTGGTCCA+TGG - chr8_2:14390832-14390851 Msa1235990:intron 50.0%
GTTGGTCCATGGAGCAAAAC+TGG - chr8_2:14390843-14390862 Msa1235990:intron 50.0%
ATAATGTGAGTCTCAGCGGC+GGG + chr8_2:14391159-14391178 None:intergenic 50.0%
TTGGTCATAACGTGGAGCGA+TGG + chr8_2:14391358-14391377 None:intergenic 50.0%
! GTCTTGGTAATCATCTCCCG+TGG + chr8_2:14391750-14391769 None:intergenic 50.0%
CGTCGCTAATGATTGGCACA+CGG - chr8_2:14392295-14392314 Msa1235990:intron 50.0%
CCAAGGCAGATTTGCATTCG+CGG - chr8_2:14392537-14392556 Msa1235990:intron 50.0%
CTAGTGTCAGGCCCAGATAA+AGG - chr8_2:14392806-14392825 Msa1235990:intron 50.0%
GACAACATTCTTCGCCGAAC+TGG - chr8_2:14392839-14392858 Msa1235990:intron 50.0%
! GAAGCACTCCAAGCAGAAGT+TGG - chr8_2:14393130-14393149 Msa1235990:intron 50.0%
CCAAGCAGAAGTTGGATTGC+CGG - chr8_2:14393138-14393157 Msa1235990:intron 50.0%
CAGCTACAAGCTATGCGCTA+CGG - chr8_2:14393551-14393570 Msa1235990:intron 50.0%
TGCATGCAGTCAGTCCAATC+TGG - chr8_2:14393646-14393665 Msa1235990:intron 50.0%
CCACCTGTTGAGGCAACAAT+TGG + chr8_2:14393829-14393848 None:intergenic 50.0%
CCAATTGTTGCCTCAACAGG+TGG - chr8_2:14393826-14393845 Msa1235990:intron 50.0%
!! TGCCTCAACAGGTGGATTAG+TGG - chr8_2:14393834-14393853 Msa1235990:intron 50.0%
GTCCACTAATCCACCTGTTG+AGG + chr8_2:14393839-14393858 None:intergenic 50.0%
TTAGTGTGACGCTGTGGATC+CGG - chr8_2:14394013-14394032 Msa1235990:CDS 50.0%
GCTATTGCATCCACATCAGC+CGG + chr8_2:14394035-14394054 None:intergenic 50.0%
ACAAAGGCCCTTGCAGTCTA+TGG - chr8_2:14394065-14394084 Msa1235990:CDS 50.0%
ACTTCCTCCCACTTCTTAGC+AGG + chr8_2:14394552-14394571 None:intergenic 50.0%
!! GGAGGAAGTGCTGCTAAGTT+TGG - chr8_2:14394563-14394582 Msa1235990:intron 50.0%
CTGCTAAGTTTGGGAGTTCC+TGG - chr8_2:14394573-14394592 Msa1235990:intron 50.0%
TCAATTCCAGGTTCACTGCC+AGG + chr8_2:14394594-14394613 None:intergenic 50.0%
GGCAGTGAACCTGGAATTGA+TGG - chr8_2:14394594-14394613 Msa1235990:intron 50.0%
ATGGAACTTCACCCCAGTGA+TGG - chr8_2:14394716-14394735 Msa1235990:intron 50.0%
TATGGCCGTTGCGTCCGTAA+AGG + chr8_2:14390373-14390392 None:intergenic 55.0%
GGTCCATGGAGCAAAACTGG+TGG - chr8_2:14390846-14390865 Msa1235990:intron 55.0%
TGGTAATCATCTCCCGTGGC+AGG + chr8_2:14391746-14391765 None:intergenic 55.0%
CCGCGAATGCAAATCTGCCT+TGG + chr8_2:14392540-14392559 None:intergenic 55.0%
GTCAGGCCCAGATAAAGGAG+TGG - chr8_2:14392811-14392830 Msa1235990:intron 55.0%
!! CTTCGCCGAACTGGTGTTAC+TGG - chr8_2:14392848-14392867 Msa1235990:intron 55.0%
CCGGCAATCCAACTTCTGCT+TGG + chr8_2:14393141-14393160 None:intergenic 55.0%
!! GCAACTCCTCTAGCCTTGTC+AGG + chr8_2:14393443-14393462 None:intergenic 55.0%
TACGGACGCAACGGCCATAG+AGG - chr8_2:14390374-14390393 Msa1235990:intron 60.0%
!! AGGCAGCTCTGGAAGCAGCA+AGG - chr8_2:14392129-14392148 Msa1235990:intron 60.0%
!! GGCAGCTCTGGAAGCAGCAA+GGG - chr8_2:14392130-14392149 Msa1235990:intron 60.0%
GGGACCTGCTAAGAAGTGGG+AGG - chr8_2:14394545-14394564 Msa1235990:intron 60.0%
GGAGTTCCTGGCAGTGAACC+TGG - chr8_2:14394585-14394604 Msa1235990:intron 60.0%
CGCTGTGGATCCGGCTGATG+TGG - chr8_2:14394022-14394041 Msa1235990:CDS 65.0%
GCTGACTGCGCGCACTCACG+AGG - chr8_2:14393718-14393737 Msa1235990:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 14389830 14394949 14389830 ID=Msa1235990;Name=Msa1235990
chr8_2 mRNA 14389830 14394949 14389830 ID=Msa1235990-mRNA-1;Parent=Msa1235990;Name=Msa1235990-mRNA-1;_AED=0.11;_eAED=0.11;_QI=200|0.86|0.93|0.93|0.86|0.75|16|258|636
chr8_2 exon 14389830 14390083 14389830 ID=Msa1235990-mRNA-1:exon:5567;Parent=Msa1235990-mRNA-1
chr8_2 exon 14390113 14390233 14390113 ID=Msa1235990-mRNA-1:exon:5566;Parent=Msa1235990-mRNA-1
chr8_2 exon 14390634 14390762 14390634 ID=Msa1235990-mRNA-1:exon:5565;Parent=Msa1235990-mRNA-1
chr8_2 exon 14390870 14390956 14390870 ID=Msa1235990-mRNA-1:exon:5564;Parent=Msa1235990-mRNA-1
chr8_2 exon 14391065 14391124 14391065 ID=Msa1235990-mRNA-1:exon:5563;Parent=Msa1235990-mRNA-1
chr8_2 exon 14391202 14391393 14391202 ID=Msa1235990-mRNA-1:exon:5562;Parent=Msa1235990-mRNA-1
chr8_2 exon 14391500 14391676 14391500 ID=Msa1235990-mRNA-1:exon:5561;Parent=Msa1235990-mRNA-1
chr8_2 exon 14391830 14392073 14391830 ID=Msa1235990-mRNA-1:exon:5560;Parent=Msa1235990-mRNA-1
chr8_2 exon 14392162 14392271 14392162 ID=Msa1235990-mRNA-1:exon:5559;Parent=Msa1235990-mRNA-1
chr8_2 exon 14392400 14392500 14392400 ID=Msa1235990-mRNA-1:exon:5558;Parent=Msa1235990-mRNA-1
chr8_2 exon 14392585 14392648 14392585 ID=Msa1235990-mRNA-1:exon:5557;Parent=Msa1235990-mRNA-1
chr8_2 exon 14392980 14393069 14392980 ID=Msa1235990-mRNA-1:exon:5556;Parent=Msa1235990-mRNA-1
chr8_2 exon 14393150 14393248 14393150 ID=Msa1235990-mRNA-1:exon:5555;Parent=Msa1235990-mRNA-1
chr8_2 exon 14393366 14393446 14393366 ID=Msa1235990-mRNA-1:exon:5554;Parent=Msa1235990-mRNA-1
chr8_2 exon 14393871 14394238 14393871 ID=Msa1235990-mRNA-1:exon:5553;Parent=Msa1235990-mRNA-1
chr8_2 exon 14394758 14394949 14394758 ID=Msa1235990-mRNA-1:exon:5552;Parent=Msa1235990-mRNA-1
chr8_2 five_prime_UTR 14394758 14394949 14394758 ID=Msa1235990-mRNA-1:five_prime_utr;Parent=Msa1235990-mRNA-1
chr8_2 five_prime_UTR 14394231 14394238 14394231 ID=Msa1235990-mRNA-1:five_prime_utr;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14393871 14394230 14393871 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14393366 14393446 14393366 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14393150 14393248 14393150 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14392980 14393069 14392980 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14392585 14392648 14392585 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14392400 14392500 14392400 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14392162 14392271 14392162 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14391830 14392073 14391830 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14391500 14391676 14391500 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14391202 14391393 14391202 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14391065 14391124 14391065 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14390870 14390956 14390870 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14390634 14390762 14390634 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 CDS 14390117 14390233 14390117 ID=Msa1235990-mRNA-1:cds;Parent=Msa1235990-mRNA-1
chr8_2 three_prime_UTR 14390113 14390116 14390113 ID=Msa1235990-mRNA-1:three_prime_utr;Parent=Msa1235990-mRNA-1
chr8_2 three_prime_UTR 14389830 14390083 14389830 ID=Msa1235990-mRNA-1:three_prime_utr;Parent=Msa1235990-mRNA-1
Gene Sequence

>Msa1235990

ATGGCAACAGTGACTGCTTCAAGCAACATAGCATCAAGAAATTCTCATATCTACCATGTCAATGTACCAACTATCTCATGTGAGTCTAAAACAGCACCGATGAGACTTGGTTCTATGAGAAAAGCCAATACACATAATGGACTCAGAATTTTGAACTCATTGGATGAGCTACTAAATAGAACTCCAATTAAAATGAAGGCAGTGAAATCAAGGAGAAAAGGTCTTCAGAGAAAGAATGTTATGCCGAAAGGTATTATAATTTGTGGCATGAATTTGATCTTTGTTGGAACTGAGGTTGGTCCATGGAGCAAAACTGGTGGTTTAGGAGATGTTCTAGGAGGTCTTCCACCAGTATTAGCAGCTAATGGACACAGAGTTATGACCATCGCTCCACGTTATGACCAATACAAAGATGCGTGGGATACAAGTGTAACAATTGAGGTAAAAGTAGGAGATAGAAAAGAAAAAGTTCGCTTCTTTCATTGCTTTAAAAGAGGAGTTGATCGCGTCTTTGTAGATCACCCTATATTTCTTGAAAAGGTTTGGGGAAAAACTGGAACAAAAATTTATGGACCTGCCACGGGAGATGATTACCAAGACAATCAACTACGTTTTAGCCTCTTCTGTCAGGCAGCTCTGGAAGCAGCAAGGGTTCTGAATCTCACGAGCAATAAATATTTCTCAGGACCATATGGTGAAGATGTCATTTTCGTCGCTAATGATTGGCACACGGCCCTTATCTCATGCTACTTGAAATCTATGTACCAGCCAAATGGCATATTTAGGAATGCCAAAGTTGTTTTTTGTATCCACAACATTGCATACCAAGGCAGATTTGCATTCGCGGACTATTCACTTCTCAATCTTCCCGACCAATTTAAAAGCTCATTCGACTTCATAGATGGGTATGTTAAACCAGTTGTTGGAAGAAAAATCAACTGGATGAAAGCTGGAATTTTAGAATCTCACCGGGTTTTAACTGTTAGTCCATACTATGCTCAAGAACTAGTGTCAGGCCCAGATAAAGGAGTGGAATTGGACAACATTCTTCGCCGAACTGGTGTTACTGGTATTGTAAATGGCATGGATGTTCAAGAGTGGAATCCATCCACTGACAAATACATAACTGTCAAATACGACGATTCGACAGTATTGGAAGGAAAAGCCCTTCTGAAAGAAGCACTCCAAGCAGAAGTTGGATTGCCGGTTGACAAAAATATTCCTCTCATTGCTTTCATTGGTAGACTTGAAGAGCAAAAAGGTTCTGATATTCTTGTAGCAGCCATTCCCCAATTTATTAAGGAGGATGTTCAGATAGTAGCCCTAGGAACAGGAAAAAAGGAAATGGAAAAGCAACTTCAACAACTTGAAATATCATATCCTGACAAGGCTAGAGGAGTTGCAAAATTCAATGTTCCCTTAGCACACATGATAATTGCAGGAGCTGATTATATATTGATTCCTAGTAGATTTGAGCCTTGTGGTCTCATTCAGCTACAAGCTATGCGCTACGGAACTTCAGTCCAATCTGGATCGTCTGAAATTGAAAACTGGACTGTCAATTTTGATGGTTCAGATGTACCAATTGTTGCCTCAACAGGTGGATTAGTGGACACAGTCAAAGAAGGTTTCACTGGATTTCAGATGGGTTCCTTCAATGTTGAATGTGACGCTGTGGATCCGGCTGATGTGGATGCAATAGCAAAGACTGTCACAAAGGCCCTTGCAGTCTATGGAACTCCAACTTTTGCAGAAATGATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGACCTGCTAAGAAGTGGGAGGAAGTGCTGCTAAGTTTGGGAGTTCCTGGCAGTGAACCTGGAATTGATGGAGAAGAAATTGCTCCACAGGCAAAGGAAAATGTAGCTACTCCATGA

Protein sequence

>Msa1235990

MATVTASSNIASRNSHIYHVNVPTISCESKTAPMRLGSMRKANTHNGLRILNSLDELLNRTPIKMKAVKSRRKGLQRKNVMPKGIIICGMNLIFVGTEVGPWSKTGGLGDVLGGLPPVLAANGHRVMTIAPRYDQYKDAWDTSVTIEVKVGDRKEKVRFFHCFKRGVDRVFVDHPIFLEKVWGKTGTKIYGPATGDDYQDNQLRFSLFCQAALEAARVLNLTSNKYFSGPYGEDVIFVANDWHTALISCYLKSMYQPNGIFRNAKVVFCIHNIAYQGRFAFADYSLLNLPDQFKSSFDFIDGYVKPVVGRKINWMKAGILESHRVLTVSPYYAQELVSGPDKGVELDNILRRTGVTGIVNGMDVQEWNPSTDKYITVKYDDSTVLEGKALLKEALQAEVGLPVDKNIPLIAFIGRLEEQKGSDILVAAIPQFIKEDVQIVALGTGKKEMEKQLQQLEISYPDKARGVAKFNVPLAHMIIAGADYILIPSRFEPCGLIQLQAMRYGTSVQSGSSEIENWTVNFDGSDVPIVASTGGLVDTVKEGFTGFQMGSFNVECDAVDPADVDAIAKTVTKALAVYGTPTFAEMIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIAPQAKENVATP*