Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815650 | Q40345.1 | 93.932 | 412 | 1 | 1 | 1 | 388 | 22 | 433 | 0.0 | 790 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815650 | sp|Q40345|IDHP_MEDSA | 93.932 | 412 | 1 | 1 | 1 | 388 | 22 | 433 | 0.0 | 790 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815650 | G7KFV7 | 93.689 | 412 | 2 | 1 | 1 | 388 | 1 | 412 | 0.0 | 788 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0815650 | -0.805287 | 1.435982e-49 | -8.615850e-47 |
| Msa0025060 | Msa0815650 | -0.809861 | 1.534732e-50 | -8.615850e-47 |
| Msa0025090 | Msa0815650 | -0.805753 | 1.146163e-49 | -8.615850e-47 |
| Msa0027610 | Msa0815650 | -0.806305 | 8.775500e-50 | -8.615850e-47 |
| Msa0037720 | Msa0815650 | 0.811158 | 8.053647e-51 | -8.615850e-47 |
| Msa0046680 | Msa0815650 | 0.812587 | 3.934173e-51 | -8.615850e-47 |
| Msa0055030 | Msa0815650 | 0.830179 | 3.398133e-55 | -8.615850e-47 |
| Msa0081700 | Msa0815650 | -0.835972 | 1.228780e-56 | -8.615850e-47 |
| Msa0118620 | Msa0815650 | 0.809441 | 1.889251e-50 | -8.615850e-47 |
| Msa0604890 | Msa0815650 | -0.822338 | 2.499272e-53 | -8.615850e-47 |
| Msa0614480 | Msa0815650 | 0.835337 | 1.779208e-56 | -8.615850e-47 |
| Msa0617470 | Msa0815650 | -0.823692 | 1.207697e-53 | -8.615850e-47 |
| Msa0646180 | Msa0815650 | -0.813646 | 2.304114e-51 | -8.615850e-47 |
| Msa0686810 | Msa0815650 | 0.800894 | 1.163139e-48 | -8.615850e-47 |
| Msa0700250 | Msa0815650 | -0.821804 | 3.322113e-53 | -8.615850e-47 |
| Msa0713290 | Msa0815650 | 0.801692 | 7.985726e-49 | -8.615850e-47 |
| Msa0737030 | Msa0815650 | 0.896328 | 4.100128e-76 | -8.615850e-47 |
| Msa0742690 | Msa0815650 | -0.801502 | 8.736003e-49 | -8.615850e-47 |
| Msa0744540 | Msa0815650 | 0.836372 | 9.729130e-57 | -8.615850e-47 |
| Msa0744550 | Msa0815650 | 0.827876 | 1.228054e-54 | -8.615850e-47 |
| Msa0744560 | Msa0815650 | 0.842939 | 1.903135e-58 | -8.615850e-47 |
| Msa0779830 | Msa0815650 | -0.825079 | 5.699381e-54 | -8.615850e-47 |
| Msa0781800 | Msa0815650 | 0.940760 | 1.342934e-100 | -8.615850e-47 |
| Msa0782890 | Msa0815650 | 0.817939 | 2.542370e-52 | -8.615850e-47 |
| Msa0815650 | Msa0826360 | 0.814602 | 1.416994e-51 | -8.615850e-47 |
| Msa0815650 | Msa0826370 | 0.845769 | 3.302110e-59 | -8.615850e-47 |
| Msa0815650 | Msa0826380 | 0.840709 | 7.385546e-58 | -8.615850e-47 |
| Msa0815650 | Msa0826450 | 0.842059 | 3.258262e-58 | -8.615850e-47 |
| Msa0815650 | Msa0856020 | 0.881450 | 2.376751e-70 | -8.615850e-47 |
| Msa0815650 | Msa0865810 | 0.860886 | 1.510408e-63 | -8.615850e-47 |
| Msa0815650 | Msa0865820 | 0.832007 | 1.208340e-55 | -8.615850e-47 |
| Msa0815650 | Msa0865830 | 0.820402 | 6.992304e-53 | -8.615850e-47 |
| Msa0815650 | Msa0870220 | -0.830324 | 3.131924e-55 | -8.615850e-47 |
| Msa0815650 | Msa0903460 | -0.841271 | 5.256822e-58 | -8.615850e-47 |
| Msa0815650 | Msa0906100 | -0.816613 | 5.053538e-52 | -8.615850e-47 |
| Msa0815650 | Msa0933050 | -0.813002 | 3.191106e-51 | -8.615850e-47 |
| Msa0815650 | Msa0935930 | -0.826568 | 2.525377e-54 | -8.615850e-47 |
| Msa0815650 | Msa0947420 | 0.819511 | 1.117641e-52 | -8.615850e-47 |
| Msa0815650 | Msa0972930 | -0.808099 | 3.658060e-50 | -8.615850e-47 |
| Msa0815650 | Msa1018210 | -0.829204 | 5.865339e-55 | -8.615850e-47 |
| Msa0815650 | Msa1022300 | -0.800269 | 1.560030e-48 | -8.615850e-47 |
| Msa0815650 | Msa1106570 | -0.802842 | 4.630305e-49 | -8.615850e-47 |
| Msa0815650 | Msa1110900 | 0.807606 | 4.657241e-50 | -8.615850e-47 |
| Msa0815650 | Msa1128720 | 0.825836 | 3.771596e-54 | -8.615850e-47 |
| Msa0815650 | Msa1157200 | 0.846818 | 1.710173e-59 | -8.615850e-47 |
| Msa0815650 | Msa1165010 | 0.810492 | 1.122098e-50 | -8.615850e-47 |
| Msa0815650 | Msa1179340 | 0.821011 | 5.064748e-53 | -8.615850e-47 |
| Msa0815650 | Msa1192790 | -0.809278 | 2.047683e-50 | -8.615850e-47 |
| Msa0815650 | Msa1202470 | 0.802544 | 5.335859e-49 | -8.615850e-47 |
| Msa0815650 | Msa1235960 | -0.802500 | 5.447036e-49 | -8.615850e-47 |
| Msa0815650 | Msa1235990 | -0.810480 | 1.128776e-50 | -8.615850e-47 |
| Msa0815650 | Msa1275220 | 0.829249 | 5.721958e-55 | -8.615850e-47 |
| Msa0815650 | Msa1299200 | 0.837670 | 4.532882e-57 | -8.615850e-47 |
| Msa0815650 | Msa1299220 | 0.858601 | 7.366765e-63 | -8.615850e-47 |
| Msa0815650 | Msa1304980 | 0.812600 | 3.906822e-51 | -8.615850e-47 |
| Msa0815650 | Msa1327400 | -0.808583 | 2.883788e-50 | -8.615850e-47 |
| Msa0815650 | Msa1327420 | -0.805529 | 1.277315e-49 | -8.615850e-47 |
| Msa0815650 | Msa1344870 | -0.819156 | 1.346415e-52 | -8.615850e-47 |
| Msa0815650 | Msa1359880 | -0.813518 | 2.457650e-51 | -8.615850e-47 |
| Msa0815650 | Msa1393930 | 0.820409 | 6.964924e-53 | -8.615850e-47 |
| Msa0815650 | Msa1422380 | 0.804395 | 2.205149e-49 | -8.615850e-47 |
| Msa0815650 | Msa1459920 | 0.818191 | 2.229103e-52 | -8.615850e-47 |
| Msa0815650 | Msa1459930 | 0.814817 | 1.269888e-51 | -8.615850e-47 |
| Msa0123310 | Msa0815650 | -0.803297 | 3.728162e-49 | -8.615850e-47 |
| Msa0127910 | Msa0815650 | -0.803570 | 3.273009e-49 | -8.615850e-47 |
| Msa0132870 | Msa0815650 | 0.822170 | 2.733245e-53 | -8.615850e-47 |
| Msa0148000 | Msa0815650 | -0.827244 | 1.741166e-54 | -8.615850e-47 |
| Msa0174060 | Msa0815650 | -0.814864 | 1.240098e-51 | -8.615850e-47 |
| Msa0194370 | Msa0815650 | -0.800667 | 1.294289e-48 | -8.615850e-47 |
| Msa0198140 | Msa0815650 | -0.805224 | 1.480064e-49 | -8.615850e-47 |
| Msa0214800 | Msa0815650 | 0.810529 | 1.101419e-50 | -8.615850e-47 |
| Msa0224200 | Msa0815650 | 0.854952 | 8.734734e-62 | -8.615850e-47 |
| Msa0224210 | Msa0815650 | 0.802510 | 5.422043e-49 | -8.615850e-47 |
| Msa0373550 | Msa0815650 | 0.800311 | 1.529936e-48 | -8.615850e-47 |
| Msa0390590 | Msa0815650 | -0.807317 | 5.362360e-50 | -8.615850e-47 |
| Msa0390790 | Msa0815650 | 0.807683 | 4.483702e-50 | -8.615850e-47 |
| Msa0466850 | Msa0815650 | 0.812802 | 3.529598e-51 | -8.615850e-47 |
| Msa0468660 | Msa0815650 | 0.802489 | 5.474802e-49 | -8.615850e-47 |
| Msa0480530 | Msa0815650 | 0.833788 | 4.360064e-56 | -8.615850e-47 |
| Msa0480540 | Msa0815650 | 0.821453 | 4.005600e-53 | -8.615850e-47 |
| Msa0480550 | Msa0815650 | 0.839369 | 1.651721e-57 | -8.615850e-47 |
| Msa0242720 | Msa0815650 | 0.822654 | 2.110539e-53 | -8.615850e-47 |
| Msa0267230 | Msa0815650 | 0.813568 | 2.396974e-51 | -8.615850e-47 |
| Msa0294200 | Msa0815650 | 0.832421 | 9.547284e-56 | -8.615850e-47 |
| Msa0513670 | Msa0815650 | 0.819980 | 8.735770e-53 | -8.615850e-47 |
| Msa0523140 | Msa0815650 | -0.812493 | 4.124116e-51 | -8.615850e-47 |
| Msa0523150 | Msa0815650 | -0.804138 | 2.494900e-49 | -8.615850e-47 |
| Msa0526840 | Msa0815650 | -0.826264 | 2.984374e-54 | -8.615850e-47 |
| Msa0538050 | Msa0815650 | -0.803700 | 3.076328e-49 | -8.615850e-47 |
| Msa0549550 | Msa0815650 | -0.817770 | 2.775230e-52 | -8.615850e-47 |
| Msa0559440 | Msa0815650 | -0.821573 | 3.758364e-53 | -8.615850e-47 |
| Msa0561110 | Msa0815650 | 0.802802 | 4.720058e-49 | -8.615850e-47 |
| Msa0563230 | Msa0815650 | -0.812647 | 3.816196e-51 | -8.615850e-47 |
| Msa0593600 | Msa0815650 | 0.822771 | 1.982150e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815650 | MtrunA17_Chr5g0433901 | 93.689 | 412 | 2 | 1 | 1 | 388 | 1 | 412 | 0.0 | 788 |
| Msa0815650 | MtrunA17_Chr2g0309401 | 80.779 | 411 | 55 | 1 | 1 | 387 | 1 | 411 | 0.0 | 698 |
| Msa0815650 | MtrunA17_Chr6g0449881 | 77.037 | 405 | 68 | 2 | 6 | 386 | 73 | 476 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0815650 | AT1G65930.1 | 82.767 | 412 | 45 | 2 | 1 | 388 | 1 | 410 | 0.0 | 705 |
| Msa0815650 | AT1G54340.1 | 79.512 | 410 | 59 | 2 | 1 | 386 | 1 | 409 | 0.0 | 685 |
| Msa0815650 | AT5G14590.1 | 75.306 | 409 | 76 | 2 | 2 | 386 | 72 | 479 | 0.0 | 648 |
| Msa0815650 | AT1G54340.2 | 84.828 | 290 | 43 | 1 | 1 | 290 | 1 | 289 | 0.0 | 530 |
Find 141 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACAGTTACCCGTCATTTC+AGG | 0.205155 | 5_3:+49313203 | Msa0815650:CDS |
| GCCACTGACTCGGTGATTAA+AGG | 0.234489 | 5_3:+49311690 | Msa0815650:CDS |
| TCATTATAAAAGTAAATAAA+TGG | 0.234928 | 5_3:+49314154 | Msa0815650:three_prime_UTR |
| AAATGCCTTAGAAGTTTAAA+TGG | 0.244047 | 5_3:+49314084 | Msa0815650:three_prime_UTR |
| AATAAAACAGTCAAACAATA+TGG | 0.246275 | 5_3:-49314044 | None:intergenic |
| ATATGCCGCGACTATATTTA+TGG | 0.256822 | 5_3:-49309230 | None:intergenic |
| TGCTGGTTTCTCCACCCTTT+TGG | 0.261463 | 5_3:-49313231 | None:intergenic |
| TTCAATAAATACCAGGAATA+AGG | 0.281383 | 5_3:-49311549 | None:intergenic |
| AAAATCCATTTAAACTTCTA+AGG | 0.281887 | 5_3:-49314089 | None:intergenic |
| AAAACCAGCTTCAGCTTTCC+TGG | 0.287132 | 5_3:-49311714 | None:intergenic |
| ATATGTTGACAGGGCAAAAC+TGG | 0.321227 | 5_3:+49313405 | Msa0815650:intron |
| GATTTGGCACTTATTCTTCA+TGG | 0.329970 | 5_3:+49313511 | Msa0815650:CDS |
| TGGGAAGATGACCAAGGATT+TGG | 0.355308 | 5_3:+49313495 | Msa0815650:CDS |
| GTGGTCTCACCCTGGCCTTC+CGG | 0.358843 | 5_3:-49311828 | None:intergenic |
| GCATGCCTTCCAATACATAT+TGG | 0.365350 | 5_3:-49311648 | None:intergenic |
| ATGAAATGACCCGTATTATC+TGG | 0.366530 | 5_3:+49310580 | Msa0815650:CDS |
| TGTATTGGAGTTGTAGAGTC+TGG | 0.370851 | 5_3:+49313475 | Msa0815650:CDS |
| GAAGCTCGTGTCAAGGAGTT+TGG | 0.371216 | 5_3:+49311282 | Msa0815650:CDS |
| AACATCCCTCGCCTTATTCC+TGG | 0.377795 | 5_3:+49311538 | Msa0815650:CDS |
| CCAGGGTGAGACCACCGATT+TGG | 0.378111 | 5_3:+49311836 | Msa0815650:CDS |
| CTGCGTAGATTTGTGATTTG+AGG | 0.379174 | 5_3:+49313727 | Msa0815650:exon |
| ATGTTTCTGATTGTTCCATT+TGG | 0.380317 | 5_3:-49311327 | None:intergenic |
| TCCTTCATTTGTCTTATGGA+TGG | 0.388421 | 5_3:+49313998 | Msa0815650:three_prime_UTR |
| AGTATGAGGCTGCTGGTATA+TGG | 0.391774 | 5_3:+49312265 | Msa0815650:CDS |
| GACTCCTCCACATACTCTTC+AGG | 0.392513 | 5_3:-49311305 | None:intergenic |
| TGATATACTTCCAGATAATA+CGG | 0.410893 | 5_3:-49310590 | None:intergenic |
| AAGCTAGAGGCAGCTTGTAT+TGG | 0.414178 | 5_3:+49313460 | Msa0815650:CDS |
| CCTTCATTTGTCTTATGGAT+GGG | 0.425188 | 5_3:+49313999 | Msa0815650:three_prime_UTR |
| GCACCGGCTCATTGATGATA+TGG | 0.426422 | 5_3:+49312377 | Msa0815650:CDS |
| CATATTTCAAGAAGTTTATG+AGG | 0.433565 | 5_3:+49312227 | Msa0815650:CDS |
| ATAAAACAGTCAAACAATAT+GGG | 0.438479 | 5_3:-49314043 | None:intergenic |
| CTTTATTGGTTAAAGATTCA+AGG | 0.438587 | 5_3:+49312203 | Msa0815650:intron |
| GGATGCTATGCTATTTGTGC+TGG | 0.446890 | 5_3:-49313248 | None:intergenic |
| CCACTGACTCGGTGATTAAA+GGG | 0.449911 | 5_3:+49311691 | Msa0815650:CDS |
| TCATTTCAGGGTTCACCAAA+AGG | 0.451552 | 5_3:+49313216 | Msa0815650:CDS |
| TTTCAAGAAGTTTATGAGGC+AGG | 0.458695 | 5_3:+49312231 | Msa0815650:CDS |
| AGAGTGAAGGAGGTTATGTA+TGG | 0.460602 | 5_3:+49312415 | Msa0815650:CDS |
| CGCCAATCCCATCGTTGAGA+TGG | 0.461209 | 5_3:+49309371 | Msa0815650:CDS |
| TTCTTGCAACTAGGCTGTCT+AGG | 0.463457 | 5_3:+49313640 | Msa0815650:intron |
| GGATGACAATGCTACACTCT+TGG | 0.467572 | 5_3:+49313426 | Msa0815650:CDS |
| TGGACAAAGCCAATATGTAT+TGG | 0.468376 | 5_3:+49311639 | Msa0815650:CDS |
| TGTATTGGAAGGCATGCTTT+TGG | 0.469894 | 5_3:+49311654 | Msa0815650:CDS |
| AAGAATAAGTGCCAAATCCT+TGG | 0.470345 | 5_3:-49313506 | None:intergenic |
| CCCATCCATAAGACAAATGA+AGG | 0.471039 | 5_3:-49313999 | None:intergenic |
| GACAGTTACCCGTCATTTCA+GGG | 0.475980 | 5_3:+49313204 | Msa0815650:CDS |
| ACAATTCTTAAGAAATATGA+TGG | 0.480666 | 5_3:+49312095 | Msa0815650:CDS |
| ATCATGATAATCATAAATAG+TGG | 0.482943 | 5_3:+49309029 | Msa0815650:five_prime_UTR |
| CATAAATAGTGGCTGTTCGT+TGG | 0.486919 | 5_3:+49309040 | Msa0815650:five_prime_UTR |
| AAGAAGTTTATGAGGCAGGC+TGG | 0.487955 | 5_3:+49312235 | Msa0815650:CDS |
| CAGAGTGATTTCTTAGCTCA+AGG | 0.489025 | 5_3:+49312465 | Msa0815650:CDS |
| TCCATCTTTGCTTGGACAAG+AGG | 0.489775 | 5_3:+49313268 | Msa0815650:CDS |
| ACCTCTTGTCCAAGCAAAGA+TGG | 0.491078 | 5_3:-49313269 | None:intergenic |
| CTGGAAGTATATCAAGGATA+AGG | 0.496867 | 5_3:+49310599 | Msa0815650:CDS |
| TGGATGGGAATGCAAGGGTT+GGG | 0.497364 | 5_3:+49314014 | Msa0815650:three_prime_UTR |
| CAATGCAACACCTCCTTCAC+CGG | 0.504537 | 5_3:-49311874 | None:intergenic |
| GTCCATCTCAACGATGGGAT+TGG | 0.504713 | 5_3:-49309373 | None:intergenic |
| GTTTATAACTTCACCGGTGA+AGG | 0.506170 | 5_3:+49311861 | Msa0815650:CDS |
| TAAGACAAATGAAGGAAAAG+AGG | 0.509942 | 5_3:-49313991 | None:intergenic |
| CTTTCAAAAGAAATAAGAAA+GGG | 0.511085 | 5_3:+49313947 | Msa0815650:three_prime_UTR |
| GATGCGGAGAAAGAGAGGTT+AGG | 0.511293 | 5_3:-49309294 | None:intergenic |
| GCATAGCATCCATCTTTGCT+TGG | 0.511490 | 5_3:+49313260 | Msa0815650:CDS |
| ATGGATGGGAATGCAAGGGT+TGG | 0.514148 | 5_3:+49314013 | Msa0815650:three_prime_UTR |
| TCTTGCAACTAGGCTGTCTA+GGG | 0.516308 | 5_3:+49313641 | Msa0815650:intron |
| GGGTGAGACCACCGATTTGG+AGG | 0.516484 | 5_3:+49311839 | Msa0815650:CDS |
| GTCTTATGGATGGGAATGCA+AGG | 0.516993 | 5_3:+49314008 | Msa0815650:three_prime_UTR |
| TCCCATGGTCGTGGTGGTGA+AGG | 0.519310 | 5_3:-49309331 | None:intergenic |
| GAAGTTATAAACCTCCAAAT+CGG | 0.520537 | 5_3:-49311850 | None:intergenic |
| GTATTGGAGTTGTAGAGTCT+GGG | 0.522399 | 5_3:+49313476 | Msa0815650:CDS |
| CATTTCAGGGTTCACCAAAA+GGG | 0.523081 | 5_3:+49313217 | Msa0815650:CDS |
| TCATCAGTCTCATCACGATA+AGG | 0.524711 | 5_3:-49310784 | None:intergenic |
| GGGAACGAAGCATTGGCCAC+TGG | 0.529080 | 5_3:+49313968 | Msa0815650:three_prime_UTR |
| TTGGAGGTTTATAACTTCAC+CGG | 0.530673 | 5_3:+49311855 | Msa0815650:CDS |
| CATCACGATAAGGAAGGCCT+AGG | 0.534182 | 5_3:-49310774 | None:intergenic |
| ACCTTCACCACCACGACCAT+GGG | 0.535519 | 5_3:+49309330 | Msa0815650:exon |
| TTTGGTGAACCCTGAAATGA+CGG | 0.536064 | 5_3:-49313213 | None:intergenic |
| AAGAAAGGGGAACGAAGCAT+TGG | 0.538345 | 5_3:+49313961 | Msa0815650:three_prime_UTR |
| TTTGTAGTTCCGGAAGGCCA+GGG | 0.538541 | 5_3:+49311819 | Msa0815650:intron |
| AGGCTGGAAATCAAAGTATG+AGG | 0.540407 | 5_3:+49312251 | Msa0815650:CDS |
| AGGGCCAGGAAAGCTGAAGC+TGG | 0.546183 | 5_3:+49311710 | Msa0815650:CDS |
| TCAATATCGGGCCACTGACT+CGG | 0.546877 | 5_3:+49311680 | Msa0815650:CDS |
| AGTATGTGGAGGAGTCCAAA+TGG | 0.548669 | 5_3:+49311312 | Msa0815650:CDS |
| AAATCAAAGTATGAGGCTGC+TGG | 0.551069 | 5_3:+49312258 | Msa0815650:CDS |
| ACTTTCAAAAGAAATAAGAA+AGG | 0.555167 | 5_3:+49313946 | Msa0815650:three_prime_UTR |
| GACTCGGTGATTAAAGGGCC+AGG | 0.555372 | 5_3:+49311696 | Msa0815650:CDS |
| GACATCAAGTACTTTGACCT+AGG | 0.560843 | 5_3:+49310757 | Msa0815650:CDS |
| TGGTATTATCAGATGGGAGA+AGG | 0.560849 | 5_3:+49313899 | Msa0815650:intron |
| CCACCATATCATCAATGAGC+CGG | 0.562306 | 5_3:-49312380 | None:intergenic |
| AAGTGTGCAACTATCACTCC+AGG | 0.563401 | 5_3:+49311055 | Msa0815650:CDS |
| GGTATTATCAGATGGGAGAA+GGG | 0.563937 | 5_3:+49313900 | Msa0815650:intron |
| TATTATCTGGAAGTATATCA+AGG | 0.565173 | 5_3:+49310593 | Msa0815650:CDS |
| AGATATTGAAAATATTGGGT+GGG | 0.566997 | 5_3:+49309194 | Msa0815650:five_prime_UTR |
| AACCTCGTCAGTGTTGTACA+TGG | 0.567146 | 5_3:-49311898 | None:intergenic |
| CGGTGAAGGAGGTGTTGCAT+TGG | 0.567213 | 5_3:+49311875 | Msa0815650:CDS |
| CCCTTTAATCACCGAGTCAG+TGG | 0.567575 | 5_3:-49311691 | None:intergenic |
| AGTTTGGCCTGAAGAGTATG+TGG | 0.575672 | 5_3:+49311298 | Msa0815650:CDS |
| GATATACTTCCAGATAATAC+GGG | 0.575963 | 5_3:-49310589 | None:intergenic |
| GGAGAAGGGACAAGATTGAA+AGG | 0.577452 | 5_3:+49313914 | Msa0815650:three_prime_UTR |
| CCAAATCGGTGGTCTCACCC+TGG | 0.579651 | 5_3:-49311836 | None:intergenic |
| AATCCCATCGTTGAGATGGA+CGG | 0.579795 | 5_3:+49309375 | Msa0815650:CDS |
| ATAAAAGTAAATAAATGGAA+AGG | 0.582270 | 5_3:+49314159 | Msa0815650:three_prime_UTR |
| TAACCGTCCATCTCAACGAT+GGG | 0.583372 | 5_3:-49309378 | None:intergenic |
| CAAAGCCAATATGTATTGGA+AGG | 0.585098 | 5_3:+49311643 | Msa0815650:CDS |
| TTCAGGGTTCACCAAAAGGG+TGG | 0.585742 | 5_3:+49313220 | Msa0815650:CDS |
| GAGATATTGAAAATATTGGG+TGG | 0.586569 | 5_3:+49309193 | Msa0815650:five_prime_UTR |
| GACAGATGAAGCTCGTGTCA+AGG | 0.586650 | 5_3:+49311275 | Msa0815650:intron |
| CACCTTCACCACCACGACCA+TGG | 0.590110 | 5_3:+49309329 | Msa0815650:exon |
| GGACAAGAGGTCTAGCCCAT+AGG | 0.593822 | 5_3:+49313281 | Msa0815650:CDS |
| TTCTTAAGAAATATGATGGA+AGG | 0.594992 | 5_3:+49312099 | Msa0815650:CDS |
| GAAAAGATGCGGAGAAAGAG+AGG | 0.598693 | 5_3:-49309299 | None:intergenic |
| TTGGTGAACCCTGAAATGAC+GGG | 0.610959 | 5_3:-49313212 | None:intergenic |
| TTTCTGGAATCCCATGGTCG+TGG | 0.611438 | 5_3:-49309340 | None:intergenic |
| TAAAACAGTCAAACAATATG+GGG | 0.611454 | 5_3:-49314042 | None:intergenic |
| GGATTTCACTGAAAAGCTAG+AGG | 0.613200 | 5_3:+49313447 | Msa0815650:CDS |
| TAAATACCAGGAATAAGGCG+AGG | 0.613657 | 5_3:-49311544 | None:intergenic |
| TATAACTTCACCGGTGAAGG+AGG | 0.617817 | 5_3:+49311864 | Msa0815650:CDS |
| CAGTCTCATCACGATAAGGA+AGG | 0.622102 | 5_3:-49310780 | None:intergenic |
| GCATATGCACTCAAGAGTGA+AGG | 0.624556 | 5_3:+49312402 | Msa0815650:CDS |
| AATGACGGGTAACTGTCCCA+TGG | 0.626520 | 5_3:-49313198 | None:intergenic |
| CCGGCTCATTGATGATATGG+TGG | 0.626860 | 5_3:+49312380 | Msa0815650:CDS |
| AAATACCAGGAATAAGGCGA+GGG | 0.630051 | 5_3:-49311543 | None:intergenic |
| TAGAAGCAGAAGCAGCCCAT+GGG | 0.635643 | 5_3:+49313182 | Msa0815650:intron |
| GAGTGAAGGAGGTTATGTAT+GGG | 0.638514 | 5_3:+49312416 | Msa0815650:CDS |
| CTTGAGCTAAGAAATCACTC+TGG | 0.639119 | 5_3:-49312464 | None:intergenic |
| TTGATGTCCAACTCCACGAA+GGG | 0.641675 | 5_3:-49310742 | None:intergenic |
| GTTATAAACCTCCAAATCGG+TGG | 0.643639 | 5_3:-49311847 | None:intergenic |
| TCTTATGGATGGGAATGCAA+GGG | 0.644280 | 5_3:+49314009 | Msa0815650:three_prime_UTR |
| ATGACGGGTAACTGTCCCAT+GGG | 0.647069 | 5_3:-49313197 | None:intergenic |
| GGATCTTTAGGTATGAGCAC+CGG | 0.649060 | 5_3:+49312361 | Msa0815650:intron |
| TATGCACTCAAGAGTGAAGG+AGG | 0.651106 | 5_3:+49312405 | Msa0815650:CDS |
| TTTCAAAAGAAATAAGAAAG+GGG | 0.652860 | 5_3:+49313948 | Msa0815650:three_prime_UTR |
| GGTGATGATCGGAAAAGATG+CGG | 0.657637 | 5_3:-49309310 | None:intergenic |
| CTGGAATCCCATGGTCGTGG+TGG | 0.659141 | 5_3:-49309337 | None:intergenic |
| GTGGTGGTGAAGGTGATGAT+CGG | 0.665191 | 5_3:-49309321 | None:intergenic |
| ACACACCATAAATATAGTCG+CGG | 0.667665 | 5_3:+49309225 | Msa0815650:five_prime_UTR |
| CTAACCGTCCATCTCAACGA+TGG | 0.685218 | 5_3:-49309379 | None:intergenic |
| GGAGCATTATTTGAACACAG+AGG | 0.687364 | 5_3:+49313662 | Msa0815650:CDS |
| CTTGATGTCCAACTCCACGA+AGG | 0.690252 | 5_3:-49310743 | None:intergenic |
| TTGGCCTGAAGAGTATGTGG+AGG | 0.691036 | 5_3:+49311301 | Msa0815650:CDS |
| AATGAAGGAAAAGAGGCCAG+TGG | 0.701808 | 5_3:-49313984 | None:intergenic |
| GGCCATGTACAACACTGACG+AGG | 0.710277 | 5_3:+49311896 | Msa0815650:CDS |
| AGAGTCTGGGAAGATGACCA+AGG | 0.742586 | 5_3:+49313489 | Msa0815650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACTATAACTAAAAAAT+CGG | - | chr5_3:49310920-49310939 | None:intergenic | 10.0% |
| !! | AAAAACTAAAATAATATGTT+AGG | - | chr5_3:49311095-49311114 | None:intergenic | 10.0% |
| !! | TCATTATAAAAGTAAATAAA+TGG | + | chr5_3:49314154-49314173 | Msa0815650:three_prime_UTR | 10.0% |
| !! | TATTGAGATATTGAAAATAT+TGG | + | chr5_3:49309189-49309208 | Msa0815650:five_prime_UTR | 15.0% |
| !! | ATTGAGATATTGAAAATATT+GGG | + | chr5_3:49309190-49309209 | Msa0815650:five_prime_UTR | 15.0% |
| !! | AAATAAAAACGATAGAAAAA+TGG | - | chr5_3:49309675-49309694 | None:intergenic | 15.0% |
| !! | AATACAATAATACAATACTT+TGG | - | chr5_3:49310082-49310101 | None:intergenic | 15.0% |
| !! | TAAGAAAATTACATAAAATG+TGG | + | chr5_3:49310316-49310335 | Msa0815650:intron | 15.0% |
| !! | AAGAAAATTACATAAAATGT+GGG | + | chr5_3:49310317-49310336 | Msa0815650:intron | 15.0% |
| !!! | GTATAATTTTGAAACAAAAA+AGG | + | chr5_3:49310346-49310365 | Msa0815650:intron | 15.0% |
| !! | TTAAATTAAAACATACTTGA+GGG | - | chr5_3:49310839-49310858 | None:intergenic | 15.0% |
| !! | ATTAAATTAAAACATACTTG+AGG | - | chr5_3:49310840-49310859 | None:intergenic | 15.0% |
| !! | ACAATTAATGAAATTAAGTT+CGG | - | chr5_3:49311365-49311384 | None:intergenic | 15.0% |
| !!! | TTTCTTAAGAATTGTATTTT+TGG | - | chr5_3:49312090-49312109 | None:intergenic | 15.0% |
| !! | AGGAATACAATTAATTAAAT+AGG | - | chr5_3:49312185-49312204 | None:intergenic | 15.0% |
| !! | AATTAATTGTATTCCTTTAT+TGG | + | chr5_3:49312189-49312208 | Msa0815650:intron | 15.0% |
| !!! | TAGTAGAAAAATAAATGTTT+TGG | - | chr5_3:49313589-49313608 | None:intergenic | 15.0% |
| !!! | CAAAAATTGATGTTTTTTTT+TGG | + | chr5_3:49313812-49313831 | Msa0815650:intron | 15.0% |
| !! | ATAAAAGTAAATAAATGGAA+AGG | + | chr5_3:49314159-49314178 | Msa0815650:three_prime_UTR | 15.0% |
| !! | ATCATGATAATCATAAATAG+TGG | + | chr5_3:49309029-49309048 | Msa0815650:five_prime_UTR | 20.0% |
| !!! | TTGTTTCAGATATTTTTTTG+TGG | + | chr5_3:49309569-49309588 | Msa0815650:intron | 20.0% |
| !! | AAAAATAACGAAACATAGAA+TGG | - | chr5_3:49309596-49309615 | None:intergenic | 20.0% |
| !!! | ATTCTATGTTTCGTTATTTT+TGG | + | chr5_3:49309595-49309614 | Msa0815650:intron | 20.0% |
| !!! | TTAAATTTCACACTTTTTAC+CGG | - | chr5_3:49309921-49309940 | None:intergenic | 20.0% |
| !! | GTATTGTATTATTGTATTGT+TGG | + | chr5_3:49310084-49310103 | Msa0815650:intron | 20.0% |
| !! | TTCATTCATATTAATTTCCT+TGG | + | chr5_3:49310470-49310489 | Msa0815650:intron | 20.0% |
| !!! | ACAGTTTCATTTTTTTTTTC+TGG | + | chr5_3:49310659-49310678 | Msa0815650:intron | 20.0% |
| !!! | CAGTTTCATTTTTTTTTTCT+GGG | + | chr5_3:49310660-49310679 | Msa0815650:intron | 20.0% |
| !! | TAACTCAACATTATATCATA+TGG | - | chr5_3:49310946-49310965 | None:intergenic | 20.0% |
| !! | GATATAATGTTGAGTTAAAT+CGG | + | chr5_3:49310949-49310968 | Msa0815650:intron | 20.0% |
| !!! | TTCTTATCATTGTTTTCTAA+TGG | + | chr5_3:49310994-49311013 | Msa0815650:intron | 20.0% |
| !! | TTGTATTCAGCATTAAATAT+TGG | + | chr5_3:49311227-49311246 | Msa0815650:intron | 20.0% |
| !! | ATATGAGTAGAGATATATAT+TGG | + | chr5_3:49311456-49311475 | Msa0815650:intron | 20.0% |
| !!! | ATATATTGGTTTCTTATTTG+CGG | + | chr5_3:49311470-49311489 | Msa0815650:intron | 20.0% |
| !! | AGAAAAATTCAATAAATACC+AGG | - | chr5_3:49311559-49311578 | None:intergenic | 20.0% |
| !!! | TTATTTTGTTTTTGTAGTTC+CGG | + | chr5_3:49311809-49311828 | Msa0815650:intron | 20.0% |
| !!! | TGTCTTTTATTAATTTTGGT+TGG | + | chr5_3:49311931-49311950 | Msa0815650:intron | 20.0% |
| !! | AATATTTCAATGAAATATGC+TGG | + | chr5_3:49311960-49311979 | Msa0815650:intron | 20.0% |
| !! | ACAATTCTTAAGAAATATGA+TGG | + | chr5_3:49312095-49312114 | Msa0815650:CDS | 20.0% |
| !! | TGTTTATACTTCTATCTAAA+TGG | + | chr5_3:49312340-49312359 | Msa0815650:intron | 20.0% |
| !!! | TGAATAGATATTAGTTTTGA+GGG | - | chr5_3:49312565-49312584 | None:intergenic | 20.0% |
| !! | ATTAAGTATGTATCAGATTA+TGG | - | chr5_3:49312862-49312881 | None:intergenic | 20.0% |
| !! | TAATCTGATACATACTTAAT+TGG | + | chr5_3:49312862-49312881 | Msa0815650:intron | 20.0% |
| !! | TTGAATTATTGTATGATTTC+AGG | + | chr5_3:49313138-49313157 | Msa0815650:intron | 20.0% |
| !! | ATTTGTATAGTTGAGTATTA+TGG | + | chr5_3:49313317-49313336 | Msa0815650:intron | 20.0% |
| !! | TATAATATAATCAAGATACC+AGG | + | chr5_3:49313368-49313387 | Msa0815650:intron | 20.0% |
| !! | ATAATATAATCAAGATACCA+GGG | + | chr5_3:49313369-49313388 | Msa0815650:intron | 20.0% |
| !! | TTAACTTATCAGTTATCATT+GGG | + | chr5_3:49313545-49313564 | Msa0815650:intron | 20.0% |
| !! | ATAAGAAGCAAGATAAATTA+TGG | - | chr5_3:49313854-49313873 | None:intergenic | 20.0% |
| !!! | CAAACAAAAAAATTCCTTTT+AGG | - | chr5_3:49313878-49313897 | None:intergenic | 20.0% |
| !!! | CTAAAAGGAATTTTTTTGTT+TGG | + | chr5_3:49313876-49313895 | Msa0815650:intron | 20.0% |
| !! | ACTTTCAAAAGAAATAAGAA+AGG | + | chr5_3:49313946-49313965 | Msa0815650:three_prime_UTR | 20.0% |
| !! | CTTTCAAAAGAAATAAGAAA+GGG | + | chr5_3:49313947-49313966 | Msa0815650:three_prime_UTR | 20.0% |
| !! | TTTCAAAAGAAATAAGAAAG+GGG | + | chr5_3:49313948-49313967 | Msa0815650:three_prime_UTR | 20.0% |
| !! | ATAAAACAGTCAAACAATAT+GGG | - | chr5_3:49314046-49314065 | None:intergenic | 20.0% |
| !! | AATAAAACAGTCAAACAATA+TGG | - | chr5_3:49314047-49314066 | None:intergenic | 20.0% |
| !! | AAAATCCATTTAAACTTCTA+AGG | - | chr5_3:49314092-49314111 | None:intergenic | 20.0% |
| !!! | GGTTTTTTTTTTTTGTTCGT+TGG | + | chr5_3:49309061-49309080 | Msa0815650:intron | 25.0% |
| ! | AGATATTGAAAATATTGGGT+GGG | + | chr5_3:49309194-49309213 | Msa0815650:five_prime_UTR | 25.0% |
| ! | AACAACGTGATTCTATAAAA+TGG | - | chr5_3:49309749-49309768 | None:intergenic | 25.0% |
| !!! | TGTTTTAATTACACTTTTCC+CGG | + | chr5_3:49309899-49309918 | Msa0815650:intron | 25.0% |
| !!! | TAAATTTCACACTTTTTACC+GGG | - | chr5_3:49309920-49309939 | None:intergenic | 25.0% |
| ! | CCAAACATAAACTCAATATT+TGG | - | chr5_3:49309961-49309980 | None:intergenic | 25.0% |
| ! | CCAAATATTGAGTTTATGTT+TGG | + | chr5_3:49309958-49309977 | Msa0815650:intron | 25.0% |
| !! | AATGAAGTATTTCAGAATCA+TGG | - | chr5_3:49310053-49310072 | None:intergenic | 25.0% |
| !! | TTCTCTGCTTTGTAATTTTA+AGG | + | chr5_3:49310252-49310271 | Msa0815650:intron | 25.0% |
| !! | TCTCTGCTTTGTAATTTTAA+GGG | + | chr5_3:49310253-49310272 | Msa0815650:intron | 25.0% |
| !! | ATTCCATTTCATCATCTTTT+GGG | - | chr5_3:49310443-49310462 | None:intergenic | 25.0% |
| !! | TATTCCATTTCATCATCTTT+TGG | - | chr5_3:49310444-49310463 | None:intergenic | 25.0% |
| ! | TGATATACTTCCAGATAATA+CGG | - | chr5_3:49310593-49310612 | None:intergenic | 25.0% |
| !! | TATTATCTGGAAGTATATCA+AGG | + | chr5_3:49310593-49310612 | Msa0815650:CDS | 25.0% |
| !!! | ATATGCAGAGTTTTTGTTTT+AGG | + | chr5_3:49310860-49310879 | Msa0815650:intron | 25.0% |
| ! | TCATCTGTCAATTATAACAA+TGG | - | chr5_3:49311264-49311283 | None:intergenic | 25.0% |
| !! | ACAATCAGAAACATTTTGAA+TGG | + | chr5_3:49311336-49311355 | Msa0815650:CDS | 25.0% |
| !! | ACTAGTTAGTTTACATATTC+TGG | + | chr5_3:49311407-49311426 | Msa0815650:intron | 25.0% |
| ! | TTCAATAAATACCAGGAATA+AGG | - | chr5_3:49311552-49311571 | None:intergenic | 25.0% |
| !!! | TTTGGTATGCTTCTTTATTT+TGG | + | chr5_3:49311735-49311754 | Msa0815650:intron | 25.0% |
| ! | ACATAAAAATAACCTTCAGT+TGG | - | chr5_3:49311788-49311807 | None:intergenic | 25.0% |
| !! | GCGTTGTCTTTTATTAATTT+TGG | + | chr5_3:49311927-49311946 | Msa0815650:intron | 25.0% |
| !! | TTCTTAAGAAATATGATGGA+AGG | + | chr5_3:49312099-49312118 | Msa0815650:CDS | 25.0% |
| ! | AATAGGAATTAATACAGCAA+AGG | - | chr5_3:49312168-49312187 | None:intergenic | 25.0% |
| ! | CTTGAATCTTTAACCAATAA+AGG | - | chr5_3:49312205-49312224 | None:intergenic | 25.0% |
| !! | CTTTATTGGTTAAAGATTCA+AGG | + | chr5_3:49312203-49312222 | Msa0815650:intron | 25.0% |
| ! | CATATTTCAAGAAGTTTATG+AGG | + | chr5_3:49312227-49312246 | Msa0815650:CDS | 25.0% |
| ! | TTCTATCTAAATGGATCTTT+AGG | + | chr5_3:49312349-49312368 | Msa0815650:intron | 25.0% |
| !!! | GTGAATAGATATTAGTTTTG+AGG | - | chr5_3:49312566-49312585 | None:intergenic | 25.0% |
| ! | ATATCTATTCACACTTGTAT+AGG | + | chr5_3:49312574-49312593 | Msa0815650:intron | 25.0% |
| !! | ACTGACAAAAAGTATGTTAA+AGG | - | chr5_3:49312652-49312671 | None:intergenic | 25.0% |
| !! | AGAGGATTTTCAATAAATGT+GGG | - | chr5_3:49312687-49312706 | None:intergenic | 25.0% |
| !! | TAGAGGATTTTCAATAAATG+TGG | - | chr5_3:49312688-49312707 | None:intergenic | 25.0% |
| ! | AACATCAAGATATATTGCAA+AGG | - | chr5_3:49312839-49312858 | None:intergenic | 25.0% |
| !!! | ACTATTGACTTAGCAATTAA+AGG | + | chr5_3:49312930-49312949 | Msa0815650:intron | 25.0% |
| !!! | CTATTGACTTAGCAATTAAA+GGG | + | chr5_3:49312931-49312950 | Msa0815650:intron | 25.0% |
| !!! | ACATAGTGGATTTTTACATT+AGG | - | chr5_3:49312993-49313012 | None:intergenic | 25.0% |
| ! | AAAATAACCATACAAAAGTG+AGG | - | chr5_3:49313026-49313045 | None:intergenic | 25.0% |
| ! | ATTACACAGTAATTACCTAT+GGG | - | chr5_3:49313299-49313318 | None:intergenic | 25.0% |
| ! | AATTACACAGTAATTACCTA+TGG | - | chr5_3:49313300-49313319 | None:intergenic | 25.0% |
| ! | TAGAAAAATCTCTGATACAA+CGG | - | chr5_3:49313348-49313367 | None:intergenic | 25.0% |
| !!! | ATATATGCATTTTAATTCCC+TGG | - | chr5_3:49313389-49313408 | None:intergenic | 25.0% |
| ! | TAAAATGCATATATGTTGAC+AGG | + | chr5_3:49313395-49313414 | Msa0815650:intron | 25.0% |
| ! | AAAATGCATATATGTTGACA+GGG | + | chr5_3:49313396-49313415 | Msa0815650:intron | 25.0% |
| ! | GTTAACTTATCAGTTATCAT+TGG | + | chr5_3:49313544-49313563 | Msa0815650:intron | 25.0% |
| ! | TAACTTATCAGTTATCATTG+GGG | + | chr5_3:49313546-49313565 | Msa0815650:intron | 25.0% |
| !!! | TGTTTTTTTTTGGTGTCAAA+TGG | + | chr5_3:49313822-49313841 | Msa0815650:intron | 25.0% |
| !!! | AAAGGAATTTTTTTGTTTGG+TGG | + | chr5_3:49313879-49313898 | Msa0815650:intron | 25.0% |
| ! | TAAAACAGTCAAACAATATG+GGG | - | chr5_3:49314045-49314064 | None:intergenic | 25.0% |
| ! | AAATGCCTTAGAAGTTTAAA+TGG | + | chr5_3:49314084-49314103 | Msa0815650:three_prime_UTR | 25.0% |
| GAGATATTGAAAATATTGGG+TGG | + | chr5_3:49309193-49309212 | Msa0815650:five_prime_UTR | 30.0% | |
| ATCGATGAAATCAAAGATGA+AGG | - | chr5_3:49309435-49309454 | None:intergenic | 30.0% | |
| ATAACGATAAAAGCTACAAC+TGG | - | chr5_3:49309810-49309829 | None:intergenic | 30.0% | |
| !! | TGTGCAGATTTGATTTTGTT+TGG | + | chr5_3:49309830-49309849 | Msa0815650:intron | 30.0% |
| ! | TGTTTGGTTAAAAGAAGCAT+CGG | + | chr5_3:49309846-49309865 | Msa0815650:intron | 30.0% |
| ! | TTTGAGATATGTCAGAATCA+TGG | + | chr5_3:49309984-49310003 | Msa0815650:intron | 30.0% |
| TTGAGATATGTCAGAATCAT+GGG | + | chr5_3:49309985-49310004 | Msa0815650:intron | 30.0% | |
| ! | TAGCTTTTGCAAAATCACAA+GGG | + | chr5_3:49310023-49310042 | Msa0815650:intron | 30.0% |
| ! | ACTTGTAGCTAGTTTGTATT+GGG | + | chr5_3:49310148-49310167 | Msa0815650:intron | 30.0% |
| !! | GTTGACTTTATGAGTTTTTG+TGG | + | chr5_3:49310176-49310195 | Msa0815650:intron | 30.0% |
| ! | TTATGAGTTTTTGTGGTTTG+TGG | + | chr5_3:49310183-49310202 | Msa0815650:intron | 30.0% |
| ! | CTTGTTCAGACAATTTTATG+TGG | + | chr5_3:49310228-49310247 | Msa0815650:intron | 30.0% |
| !! | GTTTTGAATTCCTAATCCAT+AGG | + | chr5_3:49310393-49310412 | Msa0815650:intron | 30.0% |
| TAACCCAAAAGATGATGAAA+TGG | + | chr5_3:49310437-49310456 | Msa0815650:intron | 30.0% | |
| ! | TGTTTATGACTTCATGCTTT+TGG | + | chr5_3:49310497-49310516 | Msa0815650:intron | 30.0% |
| ! | GTTTATGACTTCATGCTTTT+GGG | + | chr5_3:49310498-49310517 | Msa0815650:intron | 30.0% |
| !!! | GTTTTTTTTTACTGCATTGC+AGG | + | chr5_3:49310555-49310574 | Msa0815650:intron | 30.0% |
| GATATACTTCCAGATAATAC+GGG | - | chr5_3:49310592-49310611 | None:intergenic | 30.0% | |
| ACGTTTCATGAGTAAGAAAT+AGG | + | chr5_3:49311145-49311164 | Msa0815650:intron | 30.0% | |
| CGTTTCATGAGTAAGAAATA+GGG | + | chr5_3:49311146-49311165 | Msa0815650:intron | 30.0% | |
| GTTTCATGAGTAAGAAATAG+GGG | + | chr5_3:49311147-49311166 | Msa0815650:intron | 30.0% | |
| TTCATGAACAAGCAATACAT+AGG | - | chr5_3:49311177-49311196 | None:intergenic | 30.0% | |
| TTCAGCATTAAATATTGGCA+TGG | + | chr5_3:49311232-49311251 | Msa0815650:intron | 30.0% | |
| ! | ATGTTTCTGATTGTTCCATT+TGG | - | chr5_3:49311330-49311349 | None:intergenic | 30.0% |
| ! | AATTGATTAGCTACCAATGA+TGG | - | chr5_3:49311434-49311453 | None:intergenic | 30.0% |
| !! | GGGATGTTTTTGCAAATAAT+TGG | - | chr5_3:49311526-49311545 | None:intergenic | 30.0% |
| TTGAATATCTCAACATTTCC+AGG | + | chr5_3:49311615-49311634 | Msa0815650:intron | 30.0% | |
| !! | ATGCTTTTGGTGATCAATAT+CGG | + | chr5_3:49311667-49311686 | Msa0815650:CDS | 30.0% |
| GAAGTTATAAACCTCCAAAT+CGG | - | chr5_3:49311853-49311872 | None:intergenic | 30.0% | |
| !! | CAGTTGCTTTAGAGAAAAAA+TGG | + | chr5_3:49312048-49312067 | Msa0815650:CDS | 30.0% |
| !!! | TTTTTGGTGCTAAGATAAAG+TGG | - | chr5_3:49312074-49312093 | None:intergenic | 30.0% |
| !! | GTTTATCAGTCACTTTCTTT+TGG | + | chr5_3:49312505-49312524 | Msa0815650:intron | 30.0% |
| ! | ATTCACACTTGTATAGGTTT+TGG | + | chr5_3:49312580-49312599 | Msa0815650:intron | 30.0% |
| !!! | TTGTATAGGTTTTGGATCAT+TGG | + | chr5_3:49312588-49312607 | Msa0815650:intron | 30.0% |
| !!! | TGTATAGGTTTTGGATCATT+GGG | + | chr5_3:49312589-49312608 | Msa0815650:intron | 30.0% |
| ! | ATTTTTCCATGTCACACTAT+CGG | - | chr5_3:49313053-49313072 | None:intergenic | 30.0% |
| TGTTTGACACATACAATGTA+TGG | + | chr5_3:49313104-49313123 | Msa0815650:intron | 30.0% | |
| AGAAAAATCTCTGATACAAC+GGG | - | chr5_3:49313347-49313366 | None:intergenic | 30.0% | |
| AACTGATAAGTTAACGTACT+TGG | - | chr5_3:49313539-49313558 | None:intergenic | 30.0% | |
| GCTATATTATTCTTGCAACT+AGG | + | chr5_3:49313631-49313650 | Msa0815650:intron | 30.0% | |
| TTTGTGTGCTCAAATATGAA+TGG | - | chr5_3:49313796-49313815 | None:intergenic | 30.0% | |
| TCTTGCTTCTTATACCTAAA+AGG | + | chr5_3:49313861-49313880 | Msa0815650:intron | 30.0% | |
| TAAGACAAATGAAGGAAAAG+AGG | - | chr5_3:49313994-49314013 | None:intergenic | 30.0% | |
| ! | CTTTTCCTTCATTTGTCTTA+TGG | + | chr5_3:49313994-49314013 | Msa0815650:three_prime_UTR | 30.0% |
| ACACACCATAAATATAGTCG+CGG | + | chr5_3:49309225-49309244 | Msa0815650:five_prime_UTR | 35.0% | |
| ATATGCCGCGACTATATTTA+TGG | - | chr5_3:49309233-49309252 | None:intergenic | 35.0% | |
| !!! | TTTGATTTTCTGGAATCCCA+TGG | - | chr5_3:49309349-49309368 | None:intergenic | 35.0% |
| TTCCTCTGCTTTGATTCAAT+TGG | + | chr5_3:49309541-49309560 | Msa0815650:intron | 35.0% | |
| ATCCAATTGAATCAAAGCAG+AGG | - | chr5_3:49309546-49309565 | None:intergenic | 35.0% | |
| TGAGATATGTCAGAATCATG+GGG | + | chr5_3:49309986-49310005 | Msa0815650:intron | 35.0% | |
| ! | GTAGCTTTTGCAAAATCACA+AGG | + | chr5_3:49310022-49310041 | Msa0815650:intron | 35.0% |
| ! | AGCTTTTGCAAAATCACAAG+GGG | + | chr5_3:49310024-49310043 | Msa0815650:intron | 35.0% |
| ! | CACTTGTAGCTAGTTTGTAT+TGG | + | chr5_3:49310147-49310166 | Msa0815650:intron | 35.0% |
| TTACATAAAATGTGGGAGTC+AGG | + | chr5_3:49310324-49310343 | Msa0815650:intron | 35.0% | |
| GAAGTCATAAACATAGACCA+AGG | - | chr5_3:49310490-49310509 | None:intergenic | 35.0% | |
| ATGAAATGACCCGTATTATC+TGG | + | chr5_3:49310580-49310599 | Msa0815650:CDS | 35.0% | |
| ! | CTGGAAGTATATCAAGGATA+AGG | + | chr5_3:49310599-49310618 | Msa0815650:CDS | 35.0% |
| TAGGATTTAACTACGATACC+TGG | - | chr5_3:49311076-49311095 | None:intergenic | 35.0% | |
| TACATATTCTGGTCCATCAT+TGG | + | chr5_3:49311418-49311437 | Msa0815650:intron | 35.0% | |
| ! | TATTTGCGGTCTGAAATTTC+AGG | + | chr5_3:49311484-49311503 | Msa0815650:intron | 35.0% |
| ! | TACTCCTTTTCCTTGATGAA+CGG | + | chr5_3:49311586-49311605 | Msa0815650:intron | 35.0% |
| ATATCTCAACATTTCCAGGT+TGG | + | chr5_3:49311619-49311638 | Msa0815650:intron | 35.0% | |
| TGGACAAAGCCAATATGTAT+TGG | + | chr5_3:49311639-49311658 | Msa0815650:CDS | 35.0% | |
| CAAAGCCAATATGTATTGGA+AGG | + | chr5_3:49311643-49311662 | Msa0815650:CDS | 35.0% | |
| !! | TGCTTTTGGTGATCAATATC+GGG | + | chr5_3:49311668-49311687 | Msa0815650:CDS | 35.0% |
| TAATTGATGTTGCCAACTGA+AGG | + | chr5_3:49311773-49311792 | Msa0815650:intron | 35.0% | |
| !!! | TTTGTTTTTGTAGTTCCGGA+AGG | + | chr5_3:49311813-49311832 | Msa0815650:intron | 35.0% |
| TTGGAGGTTTATAACTTCAC+CGG | + | chr5_3:49311855-49311874 | Msa0815650:CDS | 35.0% | |
| TTTCAAGAAGTTTATGAGGC+AGG | + | chr5_3:49312231-49312250 | Msa0815650:CDS | 35.0% | |
| GCAATTTCTTAGCTCAAGAT+AGG | + | chr5_3:49312527-49312546 | Msa0815650:intron | 35.0% | |
| ATTTCTTAGCTCAAGATAGG+TGG | + | chr5_3:49312530-49312549 | Msa0815650:intron | 35.0% | |
| AGAATACTAAATATGCCTCG+AGG | - | chr5_3:49312888-49312907 | None:intergenic | 35.0% | |
| CGAGGCATATTTAGTATTCT+TGG | + | chr5_3:49312888-49312907 | Msa0815650:intron | 35.0% | |
| GATAGTGTGACATGGAAAAA+TGG | + | chr5_3:49313052-49313071 | Msa0815650:intron | 35.0% | |
| AAGAATAAGTGCCAAATCCT+TGG | - | chr5_3:49313509-49313528 | None:intergenic | 35.0% | |
| GATTTGGCACTTATTCTTCA+TGG | + | chr5_3:49313511-49313530 | Msa0815650:CDS | 35.0% | |
| !!! | AAATGTTTTGGCCATTGTTG+TGG | - | chr5_3:49313577-49313596 | None:intergenic | 35.0% |
| ! | GTAGATTTGTGATTTGAGGT+AGG | + | chr5_3:49313731-49313750 | Msa0815650:intron | 35.0% |
| ! | TTTGAGGTAGGTGATTACTT+TGG | + | chr5_3:49313743-49313762 | Msa0815650:intron | 35.0% |
| TGCTCAAATATGAATGGAAC+CGG | - | chr5_3:49313790-49313809 | None:intergenic | 35.0% | |
| ! | TGTTTGGTGGTATTATCAGA+TGG | + | chr5_3:49313892-49313911 | Msa0815650:intron | 35.0% |
| ! | GTTTGGTGGTATTATCAGAT+GGG | + | chr5_3:49313893-49313912 | Msa0815650:intron | 35.0% |
| TCCTTCATTTGTCTTATGGA+TGG | + | chr5_3:49313998-49314017 | Msa0815650:three_prime_UTR | 35.0% | |
| CCTTCATTTGTCTTATGGAT+GGG | + | chr5_3:49313999-49314018 | Msa0815650:three_prime_UTR | 35.0% | |
| CATAAATAGTGGCTGTTCGT+TGG | + | chr5_3:49309040-49309059 | Msa0815650:five_prime_UTR | 40.0% | |
| !! | GATTGGCGACTTTGATTTTC+TGG | - | chr5_3:49309359-49309378 | None:intergenic | 40.0% |
| GGAATGATAGATCAGATCGA+AGG | - | chr5_3:49309414-49309433 | None:intergenic | 40.0% | |
| GTTTCAGTGACCTATGGATT+AGG | - | chr5_3:49310406-49310425 | None:intergenic | 40.0% | |
| TACAGTGTTTCAGTGACCTA+TGG | - | chr5_3:49310412-49310431 | None:intergenic | 40.0% | |
| GTCAGAAGCAAGATAAAGAC+TGG | - | chr5_3:49310529-49310548 | None:intergenic | 40.0% | |
| !! | ATAGCTCATTTTTCCCTTCG+TGG | + | chr5_3:49310729-49310748 | Msa0815650:intron | 40.0% |
| GACATCAAGTACTTTGACCT+AGG | + | chr5_3:49310757-49310776 | Msa0815650:CDS | 40.0% | |
| TCATCAGTCTCATCACGATA+AGG | - | chr5_3:49310787-49310806 | None:intergenic | 40.0% | |
| ACTAACACAAGTCTGCATGA+AGG | - | chr5_3:49311119-49311138 | None:intergenic | 40.0% | |
| ! | GTGCTGATCAAATTGTTGCA+TGG | + | chr5_3:49311199-49311218 | Msa0815650:intron | 40.0% |
| AAATACCAGGAATAAGGCGA+GGG | - | chr5_3:49311546-49311565 | None:intergenic | 40.0% | |
| TAAATACCAGGAATAAGGCG+AGG | - | chr5_3:49311547-49311566 | None:intergenic | 40.0% | |
| ATCTCCGTTCATCAAGGAAA+AGG | - | chr5_3:49311593-49311612 | None:intergenic | 40.0% | |
| TCAAACATCTCCGTTCATCA+AGG | - | chr5_3:49311599-49311618 | None:intergenic | 40.0% | |
| GCATGCCTTCCAATACATAT+TGG | - | chr5_3:49311651-49311670 | None:intergenic | 40.0% | |
| !! | TGTATTGGAAGGCATGCTTT+TGG | + | chr5_3:49311654-49311673 | Msa0815650:CDS | 40.0% |
| GTTATAAACCTCCAAATCGG+TGG | - | chr5_3:49311850-49311869 | None:intergenic | 40.0% | |
| GTTTATAACTTCACCGGTGA+AGG | + | chr5_3:49311861-49311880 | Msa0815650:CDS | 40.0% | |
| ! | GTCTATTCGTTCTTTTGCTG+AGG | + | chr5_3:49312016-49312035 | Msa0815650:intron | 40.0% |
| AGGCTGGAAATCAAAGTATG+AGG | + | chr5_3:49312251-49312270 | Msa0815650:CDS | 40.0% | |
| AAATCAAAGTATGAGGCTGC+TGG | + | chr5_3:49312258-49312277 | Msa0815650:CDS | 40.0% | |
| AGAGTGAAGGAGGTTATGTA+TGG | + | chr5_3:49312415-49312434 | Msa0815650:CDS | 40.0% | |
| GAGTGAAGGAGGTTATGTAT+GGG | + | chr5_3:49312416-49312435 | Msa0815650:CDS | 40.0% | |
| TGGGCATGCAAAAACTATGA+TGG | + | chr5_3:49312435-49312454 | Msa0815650:CDS | 40.0% | |
| CTTGAGCTAAGAAATCACTC+TGG | - | chr5_3:49312467-49312486 | None:intergenic | 40.0% | |
| CAGAGTGATTTCTTAGCTCA+AGG | + | chr5_3:49312465-49312484 | Msa0815650:CDS | 40.0% | |
| ! | GGGTTTGATGACTTCTGTAT+TGG | + | chr5_3:49312609-49312628 | Msa0815650:intron | 40.0% |
| ACAGCAACTGAGAGATATAG+AGG | - | chr5_3:49312705-49312724 | None:intergenic | 40.0% | |
| ! | TACATACTTAATTGGCCTCG+AGG | + | chr5_3:49312870-49312889 | Msa0815650:intron | 40.0% |
| !! | TGCAACACCTCACTTTTGTA+TGG | + | chr5_3:49313016-49313035 | Msa0815650:intron | 40.0% |
| TTGAAACCGATAGTGTGACA+TGG | + | chr5_3:49313044-49313063 | Msa0815650:intron | 40.0% | |
| AGTGTGACATGGAAAAATGG+TGG | + | chr5_3:49313055-49313074 | Msa0815650:intron | 40.0% | |
| AATGGTGGCTTCTCATTGAT+TGG | + | chr5_3:49313070-49313089 | Msa0815650:intron | 40.0% | |
| CTTCTATGGTCTTTCCATCA+GGG | - | chr5_3:49313168-49313187 | None:intergenic | 40.0% | |
| TTTGGTGAACCCTGAAATGA+CGG | - | chr5_3:49313216-49313235 | None:intergenic | 40.0% | |
| TCATTTCAGGGTTCACCAAA+AGG | + | chr5_3:49313216-49313235 | Msa0815650:CDS | 40.0% | |
| CATTTCAGGGTTCACCAAAA+GGG | + | chr5_3:49313217-49313236 | Msa0815650:CDS | 40.0% | |
| ATATGTTGACAGGGCAAAAC+TGG | + | chr5_3:49313405-49313424 | Msa0815650:intron | 40.0% | |
| GGATTTCACTGAAAAGCTAG+AGG | + | chr5_3:49313447-49313466 | Msa0815650:CDS | 40.0% | |
| TGTATTGGAGTTGTAGAGTC+TGG | + | chr5_3:49313475-49313494 | Msa0815650:CDS | 40.0% | |
| GTATTGGAGTTGTAGAGTCT+GGG | + | chr5_3:49313476-49313495 | Msa0815650:CDS | 40.0% | |
| ! | GGAGCATTATTTGAACACAG+AGG | + | chr5_3:49313662-49313681 | Msa0815650:CDS | 40.0% |
| CTGCGTAGATTTGTGATTTG+AGG | + | chr5_3:49313727-49313746 | Msa0815650:exon | 40.0% | |
| TCCTTCATATTTGAGCACAC+CGG | + | chr5_3:49313768-49313787 | Msa0815650:intron | 40.0% | |
| TGGTATTATCAGATGGGAGA+AGG | + | chr5_3:49313899-49313918 | Msa0815650:intron | 40.0% | |
| GGTATTATCAGATGGGAGAA+GGG | + | chr5_3:49313900-49313919 | Msa0815650:intron | 40.0% | |
| CCCATCCATAAGACAAATGA+AGG | - | chr5_3:49314002-49314021 | None:intergenic | 40.0% | |
| TCTTATGGATGGGAATGCAA+GGG | + | chr5_3:49314009-49314028 | Msa0815650:three_prime_UTR | 40.0% | |
| GAAAAGATGCGGAGAAAGAG+AGG | - | chr5_3:49309302-49309321 | None:intergenic | 45.0% | |
| GGTGATGATCGGAAAAGATG+CGG | - | chr5_3:49309313-49309332 | None:intergenic | 45.0% | |
| AATCCCATCGTTGAGATGGA+CGG | + | chr5_3:49309375-49309394 | Msa0815650:CDS | 45.0% | |
| TAACCGTCCATCTCAACGAT+GGG | - | chr5_3:49309381-49309400 | None:intergenic | 45.0% | |
| GGTTTGTGGTCGTAATTCAG+AGG | + | chr5_3:49310197-49310216 | Msa0815650:intron | 45.0% | |
| TTATCTTGCTTCTGACGTCG+TGG | + | chr5_3:49310533-49310552 | Msa0815650:intron | 45.0% | |
| ! | CATTTTTCCCTTCGTGGAGT+TGG | + | chr5_3:49310735-49310754 | Msa0815650:CDS | 45.0% |
| TTGATGTCCAACTCCACGAA+GGG | - | chr5_3:49310745-49310764 | None:intergenic | 45.0% | |
| CAGTCTCATCACGATAAGGA+AGG | - | chr5_3:49310783-49310802 | None:intergenic | 45.0% | |
| TTGCACTTGCACTGCTATGT+AGG | + | chr5_3:49311017-49311036 | Msa0815650:intron | 45.0% | |
| AAGTGTGCAACTATCACTCC+AGG | + | chr5_3:49311055-49311074 | Msa0815650:CDS | 45.0% | |
| ! | AGTTTGGCCTGAAGAGTATG+TGG | + | chr5_3:49311298-49311317 | Msa0815650:CDS | 45.0% |
| AGTATGTGGAGGAGTCCAAA+TGG | + | chr5_3:49311312-49311331 | Msa0815650:CDS | 45.0% | |
| !! | CATATTGGCTTTGTCCAACC+TGG | - | chr5_3:49311636-49311655 | None:intergenic | 45.0% |
| !! | CCACTGACTCGGTGATTAAA+GGG | + | chr5_3:49311691-49311710 | Msa0815650:CDS | 45.0% |
| AAAACCAGCTTCAGCTTTCC+TGG | - | chr5_3:49311717-49311736 | None:intergenic | 45.0% | |
| !!! | GGAAAGCTGAAGCTGGTTTT+TGG | + | chr5_3:49311717-49311736 | Msa0815650:CDS | 45.0% |
| TATAACTTCACCGGTGAAGG+AGG | + | chr5_3:49311864-49311883 | Msa0815650:CDS | 45.0% | |
| AACCTCGTCAGTGTTGTACA+TGG | - | chr5_3:49311901-49311920 | None:intergenic | 45.0% | |
| ATGTACAACACTGACGAGGT+TGG | + | chr5_3:49311900-49311919 | Msa0815650:intron | 45.0% | |
| !! | TTCTTTTGCTGAGGCGTCTA+TGG | + | chr5_3:49312025-49312044 | Msa0815650:CDS | 45.0% |
| AAGAAGTTTATGAGGCAGGC+TGG | + | chr5_3:49312235-49312254 | Msa0815650:CDS | 45.0% | |
| AGTATGAGGCTGCTGGTATA+TGG | + | chr5_3:49312265-49312284 | Msa0815650:CDS | 45.0% | |
| GGATCTTTAGGTATGAGCAC+CGG | + | chr5_3:49312361-49312380 | Msa0815650:intron | 45.0% | |
| CCACCATATCATCAATGAGC+CGG | - | chr5_3:49312383-49312402 | None:intergenic | 45.0% | |
| GCATATGCACTCAAGAGTGA+AGG | + | chr5_3:49312402-49312421 | Msa0815650:CDS | 45.0% | |
| TATGCACTCAAGAGTGAAGG+AGG | + | chr5_3:49312405-49312424 | Msa0815650:CDS | 45.0% | |
| GTAGACTGTAGTGCTTCGTT+AGG | + | chr5_3:49312723-49312742 | Msa0815650:intron | 45.0% | |
| !! | TATTCTTGGTGTCTTCCTGC+TGG | + | chr5_3:49312902-49312921 | Msa0815650:intron | 45.0% |
| AGTCAATAGTACCAACCAGC+AGG | - | chr5_3:49312920-49312939 | None:intergenic | 45.0% | |
| !! | TGATTTCAGGTTTGCCCTGA+TGG | + | chr5_3:49313151-49313170 | Msa0815650:intron | 45.0% |
| GCTTCTATGGTCTTTCCATC+AGG | - | chr5_3:49313169-49313188 | None:intergenic | 45.0% | |
| GACAGTTACCCGTCATTTCA+GGG | + | chr5_3:49313204-49313223 | Msa0815650:CDS | 45.0% | |
| TTGGTGAACCCTGAAATGAC+GGG | - | chr5_3:49313215-49313234 | None:intergenic | 45.0% | |
| ! | GGATGCTATGCTATTTGTGC+TGG | - | chr5_3:49313251-49313270 | None:intergenic | 45.0% |
| GCATAGCATCCATCTTTGCT+TGG | + | chr5_3:49313260-49313279 | Msa0815650:CDS | 45.0% | |
| TCCATCTTTGCTTGGACAAG+AGG | + | chr5_3:49313268-49313287 | Msa0815650:CDS | 45.0% | |
| ACCTCTTGTCCAAGCAAAGA+TGG | - | chr5_3:49313272-49313291 | None:intergenic | 45.0% | |
| GGATGACAATGCTACACTCT+TGG | + | chr5_3:49313426-49313445 | Msa0815650:CDS | 45.0% | |
| AAGCTAGAGGCAGCTTGTAT+TGG | + | chr5_3:49313460-49313479 | Msa0815650:CDS | 45.0% | |
| TGGGAAGATGACCAAGGATT+TGG | + | chr5_3:49313495-49313514 | Msa0815650:CDS | 45.0% | |
| ! | TTGGGGCATTACCACAACAA+TGG | + | chr5_3:49313563-49313582 | Msa0815650:intron | 45.0% |
| TTCTTGCAACTAGGCTGTCT+AGG | + | chr5_3:49313640-49313659 | Msa0815650:intron | 45.0% | |
| TCTTGCAACTAGGCTGTCTA+GGG | + | chr5_3:49313641-49313660 | Msa0815650:intron | 45.0% | |
| ACCGGTGTGCTCAAATATGA+AGG | - | chr5_3:49313772-49313791 | None:intergenic | 45.0% | |
| GGAGAAGGGACAAGATTGAA+AGG | + | chr5_3:49313914-49313933 | Msa0815650:three_prime_UTR | 45.0% | |
| AAGAAAGGGGAACGAAGCAT+TGG | + | chr5_3:49313961-49313980 | Msa0815650:three_prime_UTR | 45.0% | |
| AATGAAGGAAAAGAGGCCAG+TGG | - | chr5_3:49313987-49314006 | None:intergenic | 45.0% | |
| GTCTTATGGATGGGAATGCA+AGG | + | chr5_3:49314008-49314027 | Msa0815650:three_prime_UTR | 45.0% | |
| GATGCGGAGAAAGAGAGGTT+AGG | - | chr5_3:49309297-49309316 | None:intergenic | 50.0% | |
| ! | GTGGTGGTGAAGGTGATGAT+CGG | - | chr5_3:49309324-49309343 | None:intergenic | 50.0% |
| !! | TTTCTGGAATCCCATGGTCG+TGG | - | chr5_3:49309343-49309362 | None:intergenic | 50.0% |
| GTCCATCTCAACGATGGGAT+TGG | - | chr5_3:49309376-49309395 | None:intergenic | 50.0% | |
| CTAACCGTCCATCTCAACGA+TGG | - | chr5_3:49309382-49309401 | None:intergenic | 50.0% | |
| CTTGATGTCCAACTCCACGA+AGG | - | chr5_3:49310746-49310765 | None:intergenic | 50.0% | |
| CATCACGATAAGGAAGGCCT+AGG | - | chr5_3:49310777-49310796 | None:intergenic | 50.0% | |
| GACAGATGAAGCTCGTGTCA+AGG | + | chr5_3:49311275-49311294 | Msa0815650:intron | 50.0% | |
| GAAGCTCGTGTCAAGGAGTT+TGG | + | chr5_3:49311282-49311301 | Msa0815650:CDS | 50.0% | |
| ! | TTGGCCTGAAGAGTATGTGG+AGG | + | chr5_3:49311301-49311320 | Msa0815650:CDS | 50.0% |
| GACTCCTCCACATACTCTTC+AGG | - | chr5_3:49311308-49311327 | None:intergenic | 50.0% | |
| ! | AACATCCCTCGCCTTATTCC+TGG | + | chr5_3:49311538-49311557 | Msa0815650:CDS | 50.0% |
| ! | TCAATATCGGGCCACTGACT+CGG | + | chr5_3:49311680-49311699 | Msa0815650:CDS | 50.0% |
| !! | GCCACTGACTCGGTGATTAA+AGG | + | chr5_3:49311690-49311709 | Msa0815650:CDS | 50.0% |
| CCCTTTAATCACCGAGTCAG+TGG | - | chr5_3:49311694-49311713 | None:intergenic | 50.0% | |
| ! | TTTTGTAGTTCCGGAAGGCC+AGG | + | chr5_3:49311818-49311837 | Msa0815650:intron | 50.0% |
| TTTGTAGTTCCGGAAGGCCA+GGG | + | chr5_3:49311819-49311838 | Msa0815650:intron | 50.0% | |
| CAATGCAACACCTCCTTCAC+CGG | - | chr5_3:49311877-49311896 | None:intergenic | 50.0% | |
| !! | GCACCGGCTCATTGATGATA+TGG | + | chr5_3:49312377-49312396 | Msa0815650:CDS | 50.0% |
| ! | CCGGCTCATTGATGATATGG+TGG | + | chr5_3:49312380-49312399 | Msa0815650:CDS | 50.0% |
| !! | GAGGTGTTGCAGCAACATAG+TGG | - | chr5_3:49313007-49313026 | None:intergenic | 50.0% |
| ! | ATGGGCTGCTTCTGCTTCTA+TGG | - | chr5_3:49313182-49313201 | None:intergenic | 50.0% |
| ATAGAAGCAGAAGCAGCCCA+TGG | + | chr5_3:49313181-49313200 | Msa0815650:intron | 50.0% | |
| TAGAAGCAGAAGCAGCCCAT+GGG | + | chr5_3:49313182-49313201 | Msa0815650:intron | 50.0% | |
| !! | ATGACGGGTAACTGTCCCAT+GGG | - | chr5_3:49313200-49313219 | None:intergenic | 50.0% |
| !! | AATGACGGGTAACTGTCCCA+TGG | - | chr5_3:49313201-49313220 | None:intergenic | 50.0% |
| GGACAGTTACCCGTCATTTC+AGG | + | chr5_3:49313203-49313222 | Msa0815650:CDS | 50.0% | |
| TTCAGGGTTCACCAAAAGGG+TGG | + | chr5_3:49313220-49313239 | Msa0815650:CDS | 50.0% | |
| !!! | TGCTGGTTTCTCCACCCTTT+TGG | - | chr5_3:49313234-49313253 | None:intergenic | 50.0% |
| AGAGTCTGGGAAGATGACCA+AGG | + | chr5_3:49313489-49313508 | Msa0815650:CDS | 50.0% | |
| ATGGATGGGAATGCAAGGGT+TGG | + | chr5_3:49314013-49314032 | Msa0815650:three_prime_UTR | 50.0% | |
| TGGATGGGAATGCAAGGGTT+GGG | + | chr5_3:49314014-49314033 | Msa0815650:three_prime_UTR | 50.0% | |
| ACCTTCACCACCACGACCAT+GGG | + | chr5_3:49309330-49309349 | Msa0815650:exon | 55.0% | |
| CGCCAATCCCATCGTTGAGA+TGG | + | chr5_3:49309371-49309390 | Msa0815650:CDS | 55.0% | |
| !! | GACTCGGTGATTAAAGGGCC+AGG | + | chr5_3:49311696-49311715 | Msa0815650:CDS | 55.0% |
| !! | CGGTGAAGGAGGTGTTGCAT+TGG | + | chr5_3:49311875-49311894 | Msa0815650:CDS | 55.0% |
| GGCCATGTACAACACTGACG+AGG | + | chr5_3:49311896-49311915 | Msa0815650:CDS | 55.0% | |
| !! | CTTGGTGTCTTCCTGCTGGT+TGG | + | chr5_3:49312906-49312925 | Msa0815650:intron | 55.0% |
| GGACAAGAGGTCTAGCCCAT+AGG | + | chr5_3:49313281-49313300 | Msa0815650:CDS | 55.0% | |
| CACCTTCACCACCACGACCA+TGG | + | chr5_3:49309329-49309348 | Msa0815650:exon | 60.0% | |
| ! | TCCCATGGTCGTGGTGGTGA+AGG | - | chr5_3:49309334-49309353 | None:intergenic | 60.0% |
| CTGGAATCCCATGGTCGTGG+TGG | - | chr5_3:49309340-49309359 | None:intergenic | 60.0% | |
| ATCATGGGGACTCGCTGCGA+TGG | + | chr5_3:49310000-49310019 | Msa0815650:intron | 60.0% | |
| AGGGCCAGGAAAGCTGAAGC+TGG | + | chr5_3:49311710-49311729 | Msa0815650:CDS | 60.0% | |
| CCAAATCGGTGGTCTCACCC+TGG | - | chr5_3:49311839-49311858 | None:intergenic | 60.0% | |
| ! | CCAGGGTGAGACCACCGATT+TGG | + | chr5_3:49311836-49311855 | Msa0815650:CDS | 60.0% |
| !! | GGGTGAGACCACCGATTTGG+AGG | + | chr5_3:49311839-49311858 | Msa0815650:CDS | 60.0% |
| !! | GGGAACGAAGCATTGGCCAC+TGG | + | chr5_3:49313968-49313987 | Msa0815650:three_prime_UTR | 60.0% |
| ! | GTGGTCTCACCCTGGCCTTC+CGG | - | chr5_3:49311831-49311850 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 49308966 | 49314191 | 49308966 | ID=Msa0815650;Name=Msa0815650 |
| chr5_3 | mRNA | 49308966 | 49314191 | 49308966 | ID=Msa0815650-mRNA-1;Parent=Msa0815650;Name=Msa0815650-mRNA-1;_AED=0.13;_eAED=0.13;_QI=261|0.93|0.93|1|0.86|0.75|16|295|388 |
| chr5_3 | exon | 49308966 | 49309064 | 49308966 | ID=Msa0815650-mRNA-1:exon:14822;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49309186 | 49309396 | 49309186 | ID=Msa0815650-mRNA-1:exon:14823;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49310577 | 49310620 | 49310577 | ID=Msa0815650-mRNA-1:exon:14824;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49310733 | 49310842 | 49310733 | ID=Msa0815650-mRNA-1:exon:14825;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49311039 | 49311076 | 49311039 | ID=Msa0815650-mRNA-1:exon:14826;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49311280 | 49311357 | 49311280 | ID=Msa0815650-mRNA-1:exon:14827;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49311506 | 49311559 | 49311506 | ID=Msa0815650-mRNA-1:exon:14828;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49311637 | 49311738 | 49311637 | ID=Msa0815650-mRNA-1:exon:14829;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49311826 | 49311917 | 49311826 | ID=Msa0815650-mRNA-1:exon:14830;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49312017 | 49312120 | 49312017 | ID=Msa0815650-mRNA-1:exon:14831;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49312218 | 49312286 | 49312218 | ID=Msa0815650-mRNA-1:exon:14832;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49312371 | 49312486 | 49312371 | ID=Msa0815650-mRNA-1:exon:14833;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49313197 | 49313302 | 49313197 | ID=Msa0815650-mRNA-1:exon:14834;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49313417 | 49313539 | 49313417 | ID=Msa0815650-mRNA-1:exon:14835;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49313653 | 49313748 | 49313653 | ID=Msa0815650-mRNA-1:exon:14836;Parent=Msa0815650-mRNA-1 |
| chr5_3 | exon | 49313911 | 49314191 | 49313911 | ID=Msa0815650-mRNA-1:exon:14837;Parent=Msa0815650-mRNA-1 |
| chr5_3 | five_prime_UTR | 49308966 | 49309064 | 49308966 | ID=Msa0815650-mRNA-1:five_prime_utr;Parent=Msa0815650-mRNA-1 |
| chr5_3 | five_prime_UTR | 49309186 | 49309347 | 49309186 | ID=Msa0815650-mRNA-1:five_prime_utr;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49309348 | 49309396 | 49309348 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49310577 | 49310620 | 49310577 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49310733 | 49310842 | 49310733 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49311039 | 49311076 | 49311039 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49311280 | 49311357 | 49311280 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49311506 | 49311559 | 49311506 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49311637 | 49311738 | 49311637 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49311826 | 49311917 | 49311826 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49312017 | 49312120 | 49312017 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49312218 | 49312286 | 49312218 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49312371 | 49312486 | 49312371 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49313197 | 49313302 | 49313197 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49313417 | 49313539 | 49313417 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | CDS | 49313653 | 49313734 | 49313653 | ID=Msa0815650-mRNA-1:cds;Parent=Msa0815650-mRNA-1 |
| chr5_3 | three_prime_UTR | 49313735 | 49313748 | 49313735 | ID=Msa0815650-mRNA-1:three_prime_utr;Parent=Msa0815650-mRNA-1 |
| chr5_3 | three_prime_UTR | 49313911 | 49314191 | 49313911 | ID=Msa0815650-mRNA-1:three_prime_utr;Parent=Msa0815650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
