Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153290 | sp|Q8GYC1|IDD4_ARATH | 49.881 | 421 | 166 | 10 | 4 | 399 | 64 | 464 | 2.89e-114 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153290 | A0A396JLF3 | 95.761 | 401 | 11 | 3 | 4 | 404 | 51 | 445 | 0.0 | 730 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0153290 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022090 | Msa0153290 | 0.804707 | 1.898018e-49 | -8.615850e-47 |
| Msa0025060 | Msa0153290 | 0.851956 | 6.331589e-61 | -8.615850e-47 |
| Msa0025090 | Msa0153290 | 0.841306 | 5.148017e-58 | -8.615850e-47 |
| Msa0027610 | Msa0153290 | 0.831659 | 1.472205e-55 | -8.615850e-47 |
| Msa0030320 | Msa0153290 | 0.825283 | 5.100330e-54 | -8.615850e-47 |
| Msa0036560 | Msa0153290 | 0.819507 | 1.119936e-52 | -8.615850e-47 |
| Msa0038910 | Msa0153290 | 0.807173 | 5.752489e-50 | -8.615850e-47 |
| Msa0071640 | Msa0153290 | -0.815438 | 9.244929e-52 | -8.615850e-47 |
| Msa0072590 | Msa0153290 | 0.806924 | 6.494730e-50 | -8.615850e-47 |
| Msa0075370 | Msa0153290 | 0.839283 | 1.738618e-57 | -8.615850e-47 |
| Msa0077920 | Msa0153290 | 0.830778 | 2.424383e-55 | -8.615850e-47 |
| Msa0079320 | Msa0153290 | 0.813109 | 3.022542e-51 | -8.615850e-47 |
| Msa0081700 | Msa0153290 | 0.811207 | 7.857505e-51 | -8.615850e-47 |
| Msa0095550 | Msa0153290 | 0.825123 | 5.563929e-54 | -8.615850e-47 |
| Msa0099090 | Msa0153290 | 0.805615 | 1.225258e-49 | -8.615850e-47 |
| Msa0106810 | Msa0153290 | 0.973480 | 1.687262e-136 | -8.615850e-47 |
| Msa0117400 | Msa0153290 | 0.815180 | 1.055118e-51 | -8.615850e-47 |
| Msa0123310 | Msa0153290 | 0.813115 | 3.013161e-51 | -8.615850e-47 |
| Msa0125810 | Msa0153290 | 0.824667 | 7.128350e-54 | -8.615850e-47 |
| Msa0139280 | Msa0153290 | 0.830876 | 2.293598e-55 | -8.615850e-47 |
| Msa0153290 | Msa0153890 | 0.813874 | 2.052425e-51 | -8.615850e-47 |
| Msa0153290 | Msa0167800 | 0.852205 | 5.379206e-61 | -8.615850e-47 |
| Msa0153290 | Msa0170450 | 0.802161 | 6.398199e-49 | -8.615850e-47 |
| Msa0153290 | Msa0172110 | 0.831394 | 1.711419e-55 | -8.615850e-47 |
| Msa0153290 | Msa0176610 | 0.804316 | 2.290756e-49 | -8.615850e-47 |
| Msa0153290 | Msa0192890 | -0.849237 | 3.679164e-60 | -8.615850e-47 |
| Msa0153290 | Msa0196530 | -0.804110 | 2.527633e-49 | -8.615850e-47 |
| Msa0153290 | Msa0226580 | 0.826393 | 2.780444e-54 | -8.615850e-47 |
| Msa0153290 | Msa0235020 | -0.813289 | 2.759569e-51 | -8.615850e-47 |
| Msa0153290 | Msa0258280 | 0.807118 | 5.908953e-50 | -8.615850e-47 |
| Msa0153290 | Msa0266380 | 0.814018 | 1.907905e-51 | -8.615850e-47 |
| Msa0153290 | Msa0273420 | -0.815691 | 8.119672e-52 | -8.615850e-47 |
| Msa0153290 | Msa0279460 | 0.802062 | 6.704543e-49 | -8.615850e-47 |
| Msa0153290 | Msa0313680 | -0.839020 | 2.033834e-57 | -8.615850e-47 |
| Msa0153290 | Msa0341860 | 0.812625 | 3.858071e-51 | -8.615850e-47 |
| Msa0153290 | Msa0365200 | 0.820315 | 7.321125e-53 | -8.615850e-47 |
| Msa0153290 | Msa0370350 | 0.816092 | 6.609768e-52 | -8.615850e-47 |
| Msa0153290 | Msa0384130 | 0.850232 | 1.940138e-60 | -8.615850e-47 |
| Msa0153290 | Msa0384220 | -0.802410 | 5.685520e-49 | -8.615850e-47 |
| Msa0153290 | Msa0387180 | -0.809583 | 1.761525e-50 | -8.615850e-47 |
| Msa0153290 | Msa0412480 | 0.819845 | 9.378181e-53 | -8.615850e-47 |
| Msa0153290 | Msa0416470 | -0.816327 | 5.855187e-52 | -8.615850e-47 |
| Msa0153290 | Msa0434840 | 0.840034 | 1.108728e-57 | -8.615850e-47 |
| Msa0153290 | Msa0456950 | 0.829938 | 3.889731e-55 | -8.615850e-47 |
| Msa0153290 | Msa0478750 | 0.858933 | 5.860197e-63 | -8.615850e-47 |
| Msa0153290 | Msa0486210 | 0.805104 | 1.568130e-49 | -8.615850e-47 |
| Msa0153290 | Msa0522830 | 0.864398 | 1.251382e-64 | -8.615850e-47 |
| Msa0153290 | Msa0540160 | 0.813788 | 2.143614e-51 | -8.615850e-47 |
| Msa0153290 | Msa0622070 | -0.828973 | 6.673122e-55 | -8.615850e-47 |
| Msa0153290 | Msa0779830 | 0.811312 | 7.456308e-51 | -8.615850e-47 |
| Msa0153290 | Msa0801610 | 0.800818 | 1.205598e-48 | -8.615850e-47 |
| Msa0153290 | Msa0827560 | 0.810026 | 1.414273e-50 | -8.615850e-47 |
| Msa0153290 | Msa0840010 | 0.806049 | 9.935442e-50 | -8.615850e-47 |
| Msa0153290 | Msa0862750 | 0.810238 | 1.273310e-50 | -8.615850e-47 |
| Msa0153290 | Msa1022300 | 0.806826 | 6.812705e-50 | -8.615850e-47 |
| Msa0153290 | Msa1034870 | -0.810791 | 9.671831e-51 | -8.615850e-47 |
| Msa0153290 | Msa1074910 | -0.815631 | 8.375422e-52 | -8.615850e-47 |
| Msa0153290 | Msa1106570 | 0.830293 | 3.186037e-55 | -8.615850e-47 |
| Msa0153290 | Msa1192790 | 0.823997 | 1.024494e-53 | -8.615850e-47 |
| Msa0153290 | Msa1203090 | 0.824089 | 9.748630e-54 | -8.615850e-47 |
| Msa0153290 | Msa1203210 | 0.805298 | 1.428322e-49 | -8.615850e-47 |
| Msa0153290 | Msa1239870 | -0.800775 | 1.230109e-48 | -8.615850e-47 |
| Msa0153290 | Msa1258600 | -0.816333 | 5.836226e-52 | -8.615850e-47 |
| Msa0153290 | Msa1295840 | 0.825089 | 5.668230e-54 | -8.615850e-47 |
| Msa0153290 | Msa1304980 | -0.847521 | 1.097015e-59 | -8.615850e-47 |
| Msa0153290 | Msa1327400 | 0.827036 | 1.953157e-54 | -8.615850e-47 |
| Msa0153290 | Msa1327420 | 0.825462 | 4.625753e-54 | -8.615850e-47 |
| Msa0153290 | Msa1395700 | 0.833718 | 4.540967e-56 | -8.615850e-47 |
| Msa0153290 | Msa1400940 | -0.813721 | 2.217415e-51 | -8.615850e-47 |
| Msa0153290 | Msa1426690 | 0.802540 | 5.345438e-49 | -8.615850e-47 |
| Msa0153290 | Msa1433060 | 0.800666 | 1.295093e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153290 | MtrunA17_Chr1g0162971 | 95.761 | 401 | 11 | 3 | 4 | 404 | 51 | 445 | 0.0 | 730 |
| Msa0153290 | MtrunA17_Chr1g0210821 | 56.313 | 396 | 122 | 13 | 4 | 358 | 54 | 439 | 5.68e-130 | 385 |
| Msa0153290 | MtrunA17_Chr1g0163001 | 50.515 | 485 | 118 | 16 | 5 | 394 | 54 | 511 | 1.81e-127 | 377 |
| Msa0153290 | MtrunA17_Chr1g0199101 | 48.447 | 483 | 117 | 16 | 4 | 385 | 57 | 508 | 1.37e-123 | 368 |
| Msa0153290 | MtrunA17_Chr2g0330171 | 55.247 | 324 | 84 | 8 | 4 | 325 | 56 | 320 | 7.05e-108 | 325 |
| Msa0153290 | MtrunA17_Chr1g0185121 | 48.011 | 377 | 136 | 9 | 4 | 364 | 50 | 382 | 2.60e-106 | 320 |
| Msa0153290 | MtrunA17_Chr4g0040571 | 45.514 | 457 | 138 | 15 | 4 | 368 | 49 | 486 | 6.07e-106 | 322 |
| Msa0153290 | MtrunA17_Chr8g0342421 | 55.247 | 324 | 99 | 8 | 4 | 325 | 72 | 351 | 1.42e-105 | 321 |
| Msa0153290 | MtrunA17_Chr1g0181381 | 51.657 | 362 | 136 | 8 | 4 | 343 | 48 | 392 | 2.78e-105 | 320 |
| Msa0153290 | MtrunA17_Chr7g0263941 | 52.454 | 326 | 92 | 6 | 4 | 329 | 44 | 306 | 4.28e-105 | 316 |
| Msa0153290 | MtrunA17_Chr7g0268961 | 50.291 | 344 | 125 | 9 | 2 | 342 | 30 | 330 | 1.13e-99 | 305 |
| Msa0153290 | MtrunA17_Chr8g0373541 | 83.007 | 153 | 26 | 0 | 4 | 156 | 43 | 195 | 1.53e-99 | 305 |
| Msa0153290 | MtrunA17_Chr1g0191991 | 48.148 | 351 | 84 | 9 | 4 | 327 | 73 | 352 | 1.80e-98 | 303 |
| Msa0153290 | MtrunA17_Chr1g0151351 | 81.046 | 153 | 28 | 1 | 4 | 155 | 51 | 203 | 9.60e-96 | 294 |
| Msa0153290 | MtrunA17_Chr4g0029521 | 48.138 | 349 | 123 | 10 | 4 | 335 | 48 | 355 | 7.90e-95 | 293 |
| Msa0153290 | MtrunA17_Chr2g0326381 | 73.743 | 179 | 42 | 3 | 4 | 177 | 42 | 220 | 3.51e-94 | 288 |
| Msa0153290 | MtrunA17_Chr3g0141431 | 74.324 | 148 | 37 | 1 | 4 | 150 | 32 | 179 | 6.90e-86 | 267 |
| Msa0153290 | MtrunA17_Chr2g0324991 | 82.443 | 131 | 23 | 0 | 5 | 135 | 3 | 133 | 1.83e-82 | 249 |
| Msa0153290 | MtrunA17_Chr6g0479921 | 60.959 | 146 | 56 | 1 | 4 | 148 | 39 | 184 | 7.80e-67 | 219 |
| Msa0153290 | MtrunA17_Chr8g0375521 | 60.959 | 146 | 55 | 2 | 4 | 147 | 37 | 182 | 2.38e-65 | 214 |
| Msa0153290 | MtrunA17_Chr1g0200421 | 35.099 | 151 | 86 | 4 | 8 | 146 | 236 | 386 | 2.47e-24 | 104 |
| Msa0153290 | MtrunA17_Chr3g0123941 | 30.102 | 196 | 118 | 5 | 4 | 191 | 118 | 302 | 3.12e-23 | 99.4 |
| Msa0153290 | MtrunA17_Chr2g0320341 | 35.526 | 152 | 84 | 4 | 6 | 143 | 227 | 378 | 9.18e-23 | 99.4 |
| Msa0153290 | MtrunA17_Chr5g0422571 | 36.486 | 148 | 83 | 4 | 17 | 154 | 108 | 254 | 1.62e-20 | 91.3 |
| Msa0153290 | MtrunA17_Chr8g0352011 | 38.129 | 139 | 76 | 5 | 17 | 146 | 173 | 310 | 2.35e-20 | 91.3 |
| Msa0153290 | MtrunA17_Chr1g0198651 | 36.424 | 151 | 81 | 5 | 17 | 154 | 109 | 257 | 7.76e-20 | 89.0 |
| Msa0153290 | MtrunA17_Chr7g0258011 | 35.065 | 154 | 82 | 6 | 17 | 153 | 183 | 335 | 7.94e-20 | 90.1 |
| Msa0153290 | MtrunA17_Chr1g0173841 | 36.691 | 139 | 78 | 5 | 17 | 146 | 222 | 359 | 2.37e-19 | 89.0 |
| Msa0153290 | MtrunA17_Chr4g0053341 | 34.437 | 151 | 89 | 4 | 5 | 146 | 69 | 218 | 4.00e-19 | 85.9 |
| Msa0153290 | MtrunA17_Chr2g0328921 | 35.252 | 139 | 80 | 5 | 17 | 146 | 145 | 282 | 2.44e-18 | 85.1 |
| Msa0153290 | MtrunA17_Chr8g0382121 | 31.757 | 148 | 90 | 5 | 7 | 143 | 109 | 256 | 4.06e-18 | 84.3 |
| Msa0153290 | MtrunA17_Chr2g0321291 | 35.374 | 147 | 83 | 5 | 10 | 146 | 133 | 277 | 6.28e-18 | 84.0 |
| Msa0153290 | MtrunA17_Chr4g0026521 | 34.014 | 147 | 85 | 5 | 10 | 146 | 118 | 262 | 3.13e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153290 | AT2G02080.1 | 49.881 | 421 | 166 | 10 | 4 | 399 | 64 | 464 | 2.93e-115 | 346 |
| Msa0153290 | AT2G02080.4 | 49.881 | 421 | 166 | 10 | 4 | 399 | 64 | 464 | 2.93e-115 | 346 |
| Msa0153290 | AT2G02080.5 | 49.881 | 421 | 166 | 10 | 4 | 399 | 64 | 464 | 2.93e-115 | 346 |
| Msa0153290 | AT2G02080.3 | 49.881 | 421 | 166 | 10 | 4 | 399 | 64 | 464 | 2.93e-115 | 346 |
| Msa0153290 | AT5G66730.1 | 48.232 | 396 | 158 | 11 | 4 | 368 | 42 | 421 | 8.40e-108 | 327 |
| Msa0153290 | AT2G02070.2 | 92.157 | 153 | 12 | 0 | 6 | 158 | 64 | 216 | 1.59e-106 | 327 |
| Msa0153290 | AT2G02070.1 | 92.157 | 153 | 12 | 0 | 6 | 158 | 64 | 216 | 1.59e-106 | 327 |
| Msa0153290 | AT2G02080.6 | 48.894 | 407 | 163 | 10 | 18 | 399 | 1 | 387 | 2.11e-106 | 321 |
| Msa0153290 | AT2G02080.2 | 48.894 | 407 | 163 | 10 | 18 | 399 | 1 | 387 | 2.11e-106 | 321 |
| Msa0153290 | AT1G14580.1 | 88.387 | 155 | 18 | 0 | 4 | 158 | 63 | 217 | 4.25e-106 | 321 |
| Msa0153290 | AT1G14580.2 | 88.387 | 155 | 18 | 0 | 4 | 158 | 63 | 217 | 4.25e-106 | 321 |
| Msa0153290 | AT1G14580.3 | 88.387 | 155 | 18 | 0 | 4 | 158 | 77 | 231 | 9.24e-106 | 321 |
| Msa0153290 | AT3G50700.1 | 86.275 | 153 | 21 | 0 | 4 | 156 | 44 | 196 | 2.75e-102 | 311 |
| Msa0153290 | AT1G55110.3 | 83.333 | 162 | 25 | 2 | 4 | 163 | 73 | 234 | 7.05e-101 | 307 |
| Msa0153290 | AT1G55110.1 | 83.333 | 162 | 25 | 2 | 4 | 163 | 73 | 234 | 7.05e-101 | 307 |
| Msa0153290 | AT1G55110.2 | 83.333 | 162 | 25 | 2 | 4 | 163 | 73 | 234 | 7.05e-101 | 307 |
| Msa0153290 | AT1G03840.1 | 83.007 | 153 | 26 | 0 | 4 | 156 | 51 | 203 | 5.92e-99 | 304 |
| Msa0153290 | AT3G13810.6 | 85.806 | 155 | 21 | 1 | 4 | 157 | 61 | 215 | 2.46e-98 | 302 |
| Msa0153290 | AT3G45260.2 | 79.762 | 168 | 29 | 2 | 4 | 166 | 49 | 216 | 3.09e-98 | 300 |
| Msa0153290 | AT3G45260.1 | 79.762 | 168 | 29 | 2 | 4 | 166 | 49 | 216 | 3.09e-98 | 300 |
| Msa0153290 | AT3G13810.5 | 85.806 | 155 | 21 | 1 | 4 | 157 | 75 | 229 | 3.33e-98 | 302 |
| Msa0153290 | AT1G03840.2 | 82.353 | 153 | 27 | 0 | 4 | 156 | 49 | 201 | 3.34e-98 | 302 |
| Msa0153290 | AT3G13810.4 | 85.806 | 155 | 21 | 1 | 4 | 157 | 80 | 234 | 4.31e-98 | 302 |
| Msa0153290 | AT3G13810.1 | 85.806 | 155 | 21 | 1 | 4 | 157 | 80 | 234 | 4.31e-98 | 302 |
| Msa0153290 | AT3G13810.3 | 85.714 | 154 | 21 | 1 | 5 | 157 | 68 | 221 | 2.52e-97 | 300 |
| Msa0153290 | AT3G13810.2 | 85.714 | 154 | 21 | 1 | 5 | 157 | 82 | 235 | 3.18e-97 | 300 |
| Msa0153290 | AT5G03150.1 | 74.595 | 185 | 38 | 3 | 4 | 183 | 63 | 243 | 3.09e-96 | 297 |
| Msa0153290 | AT5G44160.2 | 80.769 | 156 | 30 | 0 | 1 | 156 | 5 | 160 | 3.97e-96 | 294 |
| Msa0153290 | AT5G44160.1 | 82.353 | 153 | 27 | 0 | 4 | 156 | 47 | 199 | 7.08e-96 | 295 |
| Msa0153290 | AT4G02670.1 | 82.468 | 154 | 26 | 1 | 4 | 156 | 63 | 216 | 1.17e-95 | 292 |
| Msa0153290 | AT4G02670.2 | 82.468 | 154 | 26 | 1 | 4 | 156 | 65 | 218 | 1.26e-95 | 292 |
| Msa0153290 | AT5G60470.2 | 47.258 | 383 | 169 | 10 | 4 | 368 | 54 | 421 | 1.70e-95 | 293 |
| Msa0153290 | AT5G60470.3 | 47.258 | 383 | 169 | 10 | 4 | 368 | 50 | 417 | 2.38e-95 | 293 |
| Msa0153290 | AT5G60470.1 | 46.632 | 386 | 173 | 10 | 1 | 368 | 42 | 412 | 3.64e-95 | 292 |
| Msa0153290 | AT1G25250.1 | 59.877 | 162 | 56 | 3 | 3 | 161 | 19 | 174 | 6.59e-70 | 224 |
| Msa0153290 | AT1G25250.3 | 60.000 | 160 | 55 | 3 | 4 | 160 | 43 | 196 | 4.11e-69 | 223 |
| Msa0153290 | AT2G01940.1 | 60.000 | 160 | 60 | 3 | 4 | 159 | 54 | 213 | 1.05e-67 | 221 |
| Msa0153290 | AT1G68130.1 | 52.356 | 191 | 78 | 4 | 4 | 187 | 51 | 235 | 1.51e-67 | 220 |
| Msa0153290 | AT2G01940.3 | 59.006 | 161 | 61 | 4 | 4 | 159 | 54 | 214 | 4.03e-64 | 212 |
| Msa0153290 | AT1G25250.2 | 58.400 | 125 | 43 | 3 | 40 | 161 | 1 | 119 | 4.37e-47 | 163 |
| Msa0153290 | AT1G68130.2 | 50.323 | 155 | 64 | 4 | 40 | 187 | 1 | 149 | 1.60e-46 | 162 |
| Msa0153290 | AT2G01940.2 | 59.677 | 124 | 46 | 3 | 40 | 159 | 1 | 124 | 5.97e-46 | 162 |
| Msa0153290 | AT1G34370.3 | 33.987 | 153 | 87 | 3 | 8 | 146 | 19 | 171 | 8.17e-23 | 97.8 |
| Msa0153290 | AT1G34370.2 | 33.987 | 153 | 87 | 3 | 8 | 146 | 229 | 381 | 1.28e-22 | 100 |
| Msa0153290 | AT1G34370.1 | 33.987 | 153 | 87 | 3 | 8 | 146 | 229 | 381 | 1.28e-22 | 100 |
| Msa0153290 | AT5G22890.1 | 32.026 | 153 | 90 | 3 | 8 | 146 | 202 | 354 | 1.02e-21 | 96.3 |
| Msa0153290 | AT1G13290.1 | 36.667 | 150 | 81 | 6 | 17 | 154 | 95 | 242 | 3.28e-19 | 87.8 |
| Msa0153290 | AT1G51220.1 | 34.532 | 139 | 81 | 5 | 17 | 146 | 172 | 309 | 8.37e-19 | 87.4 |
| Msa0153290 | AT3G20880.1 | 35.252 | 139 | 80 | 5 | 17 | 146 | 250 | 387 | 9.82e-19 | 87.8 |
| Msa0153290 | AT3G57670.1 | 35.971 | 139 | 79 | 5 | 17 | 146 | 211 | 348 | 1.97e-18 | 86.7 |
| Msa0153290 | AT1G34790.1 | 36.000 | 150 | 84 | 6 | 7 | 146 | 129 | 276 | 7.73e-18 | 84.0 |
| Msa0153290 | AT1G08290.1 | 33.333 | 177 | 93 | 9 | 4 | 163 | 155 | 323 | 9.95e-18 | 84.0 |
Find 83 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAATAAACCTTTCTCTT+TGG | 0.255380 | 1_4:-16545924 | None:intergenic |
| AAATAGTTGGGAGTTATTAA+TGG | 0.273423 | 1_4:-16548268 | None:intergenic |
| TGTTGTGTGATGAAATTAAA+TGG | 0.300865 | 1_4:-16548483 | None:intergenic |
| AACGCAAGATTTCACTAGTT+TGG | 0.305914 | 1_4:-16548389 | None:intergenic |
| TAATGGAAGTGTTGGTGATT+AGG | 0.308887 | 1_4:-16548251 | None:intergenic |
| ATTGATCATGATGGTAGTTT+TGG | 0.309546 | 1_4:-16548509 | None:intergenic |
| GTTTGTTGCCATTAGGCTCT+TGG | 0.316327 | 1_4:-16545790 | None:intergenic |
| GTATGTGAAGTGTGCCAAAA+AGG | 0.353724 | 1_4:+16545819 | Msa0153290:CDS |
| TAGTTTGGTTGCTGTCGTTT+TGG | 0.356154 | 1_4:-16548374 | None:intergenic |
| TCTGCAGCAACAAAGGTTAA+TGG | 0.357357 | 1_4:+16548810 | Msa0153290:CDS |
| GCAGAGAATAATGGAAATAT+TGG | 0.362372 | 1_4:+16548939 | Msa0153290:CDS |
| AGATAGGGCTTGCGCTTGTT+TGG | 0.373788 | 1_4:-16548665 | None:intergenic |
| CAAATCTGTTTGTTGCCATT+AGG | 0.375978 | 1_4:-16545797 | None:intergenic |
| TTTGTTGCCATTAGGCTCTT+GGG | 0.385028 | 1_4:-16545789 | None:intergenic |
| TACTAATATTTCGAAATAGT+TGG | 0.387081 | 1_4:-16548281 | None:intergenic |
| ACTAGTGAAATCTTGCGTTT+TGG | 0.390372 | 1_4:+16548393 | Msa0153290:CDS |
| TCTGAAAATTTCAACAATGA+AGG | 0.390896 | 1_4:+16548594 | Msa0153290:CDS |
| ACTAATATTTCGAAATAGTT+GGG | 0.395845 | 1_4:-16548280 | None:intergenic |
| TGGTGAACACATGTTGGTTC+TGG | 0.406411 | 1_4:-16545948 | None:intergenic |
| GGGTTTGAAGAGTTTGTTGT+GGG | 0.408008 | 1_4:-16548458 | None:intergenic |
| AGTGCTATCACTTCTGCATC+TGG | 0.408067 | 1_4:-16545762 | None:intergenic |
| AACTTGGAAGCAGAGAATAA+TGG | 0.409292 | 1_4:+16548930 | Msa0153290:CDS |
| TCTTCAATACTAAGAAGCTT+TGG | 0.417560 | 1_4:+16548774 | Msa0153290:CDS |
| AATATGCTGTTCAATCTGAT+TGG | 0.427517 | 1_4:+16546069 | Msa0153290:CDS |
| TATTGAAGAAGAAGTATTGT+TGG | 0.444187 | 1_4:-16548760 | None:intergenic |
| CATGTTGTTGTTGTTGAGTT+CGG | 0.445589 | 1_4:-16548568 | None:intergenic |
| CTGAAAATTTCAACAATGAA+GGG | 0.449011 | 1_4:+16548595 | Msa0153290:CDS |
| GAAGTGTTGGTGATTAGGTT+TGG | 0.449857 | 1_4:-16548246 | None:intergenic |
| TTCTAAGACTTGTGGTACTA+AGG | 0.456129 | 1_4:+16546100 | Msa0153290:CDS |
| GCTGACATGTGAGGAGAGAT+AGG | 0.463590 | 1_4:-16548681 | None:intergenic |
| GTGTTCACCATGACCCTTCA+AGG | 0.470912 | 1_4:+16545961 | Msa0153290:CDS |
| AGAAGTATTGTTGGTGGTGG+TGG | 0.473552 | 1_4:-16548751 | None:intergenic |
| TTGAGCTAGTGCATCACAAA+AGG | 0.483810 | 1_4:-16548202 | None:intergenic |
| ACTATCTCCCAAGAGCCTAA+TGG | 0.486645 | 1_4:+16545782 | Msa0153290:CDS |
| GGAGTTATTAATGGAAGTGT+TGG | 0.488921 | 1_4:-16548259 | None:intergenic |
| AATGGAAATATTGGTGGTGG+AGG | 0.493890 | 1_4:+16548948 | Msa0153290:CDS |
| GAAGAGGACACAATTTGCCT+TGG | 0.500777 | 1_4:+16545874 | Msa0153290:CDS |
| CGGACAATGATATTAATCCT+TGG | 0.509290 | 1_4:-16548548 | None:intergenic |
| TTGTTGAGGAATTTGAGATA+AGG | 0.512984 | 1_4:-16548331 | None:intergenic |
| AATAATGGAAATATTGGTGG+TGG | 0.516109 | 1_4:+16548945 | Msa0153290:CDS |
| TAACAAAGAGCCAAAGAGAA+AGG | 0.517289 | 1_4:+16545914 | Msa0153290:CDS |
| ATTAATCCTTGGAATGGTTG+TGG | 0.522106 | 1_4:-16548537 | None:intergenic |
| GTTTGAAGAGTTTGTTGTGG+GGG | 0.522772 | 1_4:-16548456 | None:intergenic |
| AGGGCACTTGGTGATCTCAC+TGG | 0.527339 | 1_4:+16545981 | Msa0153290:CDS |
| CATGACCCTTCAAGGGCACT+TGG | 0.527782 | 1_4:+16545969 | Msa0153290:CDS |
| AGAAACATGAATGGAGGAGT+TGG | 0.532530 | 1_4:+16548885 | Msa0153290:CDS |
| GTGGTTGTGATTGATCATGA+TGG | 0.533883 | 1_4:-16548518 | None:intergenic |
| AATGATATTAATCCTTGGAA+TGG | 0.541968 | 1_4:-16548543 | None:intergenic |
| CAACATATCTCTTCCATCCA+TGG | 0.544090 | 1_4:+16548351 | Msa0153290:CDS |
| GAGAATAATGGAAATATTGG+TGG | 0.544890 | 1_4:+16548942 | Msa0153290:CDS |
| AAGGTTAATGGTGGTGGTGA+TGG | 0.546808 | 1_4:+16548822 | Msa0153290:CDS |
| ATTAACCTTTGTTGCTGCAG+AGG | 0.549390 | 1_4:-16548808 | None:intergenic |
| TTCTTCCTCTGCAGCAACAA+AGG | 0.557640 | 1_4:+16548803 | Msa0153290:CDS |
| AGATCACCAAGTGCCCTTGA+AGG | 0.560455 | 1_4:-16545975 | None:intergenic |
| ACTGTGGTACTCTCTTCTCC+AGG | 0.561759 | 1_4:+16546135 | Msa0153290:CDS |
| ATAGTTATGAGAAACATGAA+TGG | 0.565754 | 1_4:+16548876 | Msa0153290:CDS |
| ATGGAAATATTGGTGGTGGA+GGG | 0.575851 | 1_4:+16548949 | Msa0153290:CDS |
| CAAGTGCCCTTGAAGGGTCA+TGG | 0.580343 | 1_4:-16545968 | None:intergenic |
| TGTGATGAAATTAAATGGAG+GGG | 0.581041 | 1_4:-16548478 | None:intergenic |
| TGAAGAAGAAGTATTGTTGG+TGG | 0.581655 | 1_4:-16548757 | None:intergenic |
| GTGTGATGAAATTAAATGGA+GGG | 0.582917 | 1_4:-16548479 | None:intergenic |
| GTTATGAGAAACATGAATGG+AGG | 0.584520 | 1_4:+16548879 | Msa0153290:CDS |
| GATCACCAAGTGCCCTTGAA+GGG | 0.585984 | 1_4:-16545974 | None:intergenic |
| AAGTCAACGTAATTTCAACT+TGG | 0.588729 | 1_4:+16548914 | Msa0153290:CDS |
| GCAACAAAGGTTAATGGTGG+TGG | 0.590964 | 1_4:+16548816 | Msa0153290:CDS |
| AGGAATTTGAGATAAGGCTA+AGG | 0.591803 | 1_4:-16548325 | None:intergenic |
| AGACAGTTTCATCACACATA+GGG | 0.594778 | 1_4:+16548179 | Msa0153290:CDS |
| TTGGTGATTAGGTTTGGTTG+TGG | 0.594792 | 1_4:-16548240 | None:intergenic |
| GGGGTTTGAAGAGTTTGTTG+TGG | 0.595591 | 1_4:-16548459 | None:intergenic |
| GAGACAGTTTCATCACACAT+AGG | 0.601074 | 1_4:+16548178 | Msa0153290:CDS |
| AGAAGAAGTATTGTTGGTGG+TGG | 0.609899 | 1_4:-16548754 | None:intergenic |
| CTGACATGTGAGGAGAGATA+GGG | 0.611438 | 1_4:-16548680 | None:intergenic |
| TCACAACCACAACCATTCCA+AGG | 0.613425 | 1_4:+16548531 | Msa0153290:CDS |
| AAAGCTCATTCTAAGACTTG+TGG | 0.613886 | 1_4:+16546092 | Msa0153290:CDS |
| TGTTCACCATGACCCTTCAA+GGG | 0.614167 | 1_4:+16545962 | Msa0153290:CDS |
| AATTTACAACTACATAGAAG+AGG | 0.622328 | 1_4:+16545858 | Msa0153290:CDS |
| GGTTTGAAGAGTTTGTTGTG+GGG | 0.624353 | 1_4:-16548457 | None:intergenic |
| TGTGTGATGAAATTAAATGG+AGG | 0.670340 | 1_4:-16548480 | None:intergenic |
| GCAGCAACAAAGGTTAATGG+TGG | 0.676561 | 1_4:+16548813 | Msa0153290:CDS |
| ATGGAAGAGATATGTTGTTG+AGG | 0.678439 | 1_4:-16548345 | None:intergenic |
| GGGTCATGGTGAACACATGT+TGG | 0.698022 | 1_4:-16545954 | None:intergenic |
| AAAGCTGTTGCTGACATGTG+AGG | 0.698667 | 1_4:-16548690 | None:intergenic |
| AAGGAGTATAGATGTGACTG+TGG | 0.709247 | 1_4:+16546119 | Msa0153290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTATTATTTATTTTTT+TGG | + | chr1_4:16546770-16546789 | Msa0153290:intron | 0.0% |
| !! | TAAAAAAAAATAAAAACACA+CGG | + | chr1_4:16546721-16546740 | Msa0153290:intron | 10.0% |
| !! | ACTAATAATTTCTTAAATTA+TGG | - | chr1_4:16546910-16546929 | None:intergenic | 10.0% |
| !! | AAAATGTTAATGATTAATTT+GGG | - | chr1_4:16547102-16547121 | None:intergenic | 10.0% |
| !! | AAAAATGTTAATGATTAATT+TGG | - | chr1_4:16547103-16547122 | None:intergenic | 10.0% |
| !!! | ATCATTAACATTTTTATTTT+TGG | + | chr1_4:16547108-16547127 | Msa0153290:intron | 10.0% |
| !!! | TCATTAACATTTTTATTTTT+GGG | + | chr1_4:16547109-16547128 | Msa0153290:intron | 10.0% |
| !! | ACATAATCTTAATCAAAATA+TGG | - | chr1_4:16546590-16546609 | None:intergenic | 15.0% |
| !!! | ATAATTTTCTCTTTTGTTTA+GGG | - | chr1_4:16546758-16546777 | None:intergenic | 15.0% |
| !!! | AATAATTTTCTCTTTTGTTT+AGG | - | chr1_4:16546759-16546778 | None:intergenic | 15.0% |
| !!! | ATTGTTAACAATATGTTTTT+AGG | + | chr1_4:16546938-16546957 | Msa0153290:intron | 15.0% |
| !! | AAAATTATGAAGAACTAAAT+TGG | - | chr1_4:16547045-16547064 | None:intergenic | 15.0% |
| !!! | TACATTTTTAATTGAATTGA+TGG | + | chr1_4:16547374-16547393 | Msa0153290:intron | 15.0% |
| !!! | TTTTTTGCCATTAAAAAAAA+TGG | + | chr1_4:16547749-16547768 | Msa0153290:intron | 15.0% |
| !!! | TTTATATTTGAAGCAAAAGA+AGG | + | chr1_4:16546441-16546460 | Msa0153290:intron | 20.0% |
| !! | AATTAAAAATGTACCAAAAG+AGG | - | chr1_4:16547367-16547386 | None:intergenic | 20.0% |
| !! | GATCAAATAATTCAAATTTC+GGG | - | chr1_4:16547646-16547665 | None:intergenic | 20.0% |
| !! | GGATCAAATAATTCAAATTT+CGG | - | chr1_4:16547647-16547666 | None:intergenic | 20.0% |
| !! | CAAGTATATAGAAATAACAT+CGG | - | chr1_4:16547777-16547796 | None:intergenic | 20.0% |
| !!! | TTAAGGAGTTTTTTTTTGTT+GGG | - | chr1_4:16547923-16547942 | None:intergenic | 20.0% |
| !!! | ATTAAGGAGTTTTTTTTTGT+TGG | - | chr1_4:16547924-16547943 | None:intergenic | 20.0% |
| !! | TAGTGGTAACAAAAAAAAAA+GGG | - | chr1_4:16547980-16547999 | None:intergenic | 20.0% |
| !! | ACTAATATTTCGAAATAGTT+GGG | - | chr1_4:16548283-16548302 | None:intergenic | 20.0% |
| !! | TACTAATATTTCGAAATAGT+TGG | - | chr1_4:16548284-16548303 | None:intergenic | 20.0% |
| ! | AATTTACAACTACATAGAAG+AGG | + | chr1_4:16545858-16545877 | Msa0153290:CDS | 25.0% |
| !!! | AAACACTATTTTAGAAAGCA+TGG | + | chr1_4:16546011-16546030 | Msa0153290:CDS | 25.0% |
| !!! | TTTATGTATAGTTGATAGCA+TGG | + | chr1_4:16546238-16546257 | Msa0153290:intron | 25.0% |
| !!! | ATGGTTTTAAATTACGATTG+TGG | + | chr1_4:16546257-16546276 | Msa0153290:intron | 25.0% |
| !!! | TTGATTTGGTTTAGTTCATT+TGG | + | chr1_4:16546473-16546492 | Msa0153290:intron | 25.0% |
| !! | ATTAGGGCTTATTAGAATTT+TGG | + | chr1_4:16546504-16546523 | Msa0153290:intron | 25.0% |
| !! | TCTTCTTTTTCTATTGAGTT+TGG | + | chr1_4:16546557-16546576 | Msa0153290:intron | 25.0% |
| ! | TTAATTGCTTTCATTTCACT+TGG | - | chr1_4:16546672-16546691 | None:intergenic | 25.0% |
| !! | TTTTCAAAGATTATTCACGT+GGG | - | chr1_4:16546701-16546720 | None:intergenic | 25.0% |
| !! | ATTTTCAAAGATTATTCACG+TGG | - | chr1_4:16546702-16546721 | None:intergenic | 25.0% |
| ! | AAAAAAATAAAAACACACGG+AGG | + | chr1_4:16546724-16546743 | Msa0153290:intron | 25.0% |
| !! | ACATTTCTATCATTTTACCT+TGG | + | chr1_4:16546822-16546841 | Msa0153290:intron | 25.0% |
| ! | ATGAATATCGATCCAAAATA+GGG | - | chr1_4:16546853-16546872 | None:intergenic | 25.0% |
| ! | TATGAATATCGATCCAAAAT+AGG | - | chr1_4:16546854-16546873 | None:intergenic | 25.0% |
| ! | ATTCATATGATGTTATGCAT+AGG | + | chr1_4:16546867-16546886 | Msa0153290:intron | 25.0% |
| !! | AGTTCTTCATAATTTTCTCA+CGG | + | chr1_4:16547049-16547068 | Msa0153290:intron | 25.0% |
| ! | TCTCTAATTCATTATATCAG+AGG | + | chr1_4:16547141-16547160 | Msa0153290:intron | 25.0% |
| ! | AAAAGGAAATAGTACAAACA+AGG | - | chr1_4:16547344-16547363 | None:intergenic | 25.0% |
| ! | CTTTCTTTGAGTAATTTAGA+AGG | - | chr1_4:16547507-16547526 | None:intergenic | 25.0% |
| ! | TGATTCAAAATTGTTGAATG+AGG | - | chr1_4:16547668-16547687 | None:intergenic | 25.0% |
| !! | GTATATCATGATAAGTATTG+CGG | - | chr1_4:16547800-16547819 | None:intergenic | 25.0% |
| ! | AATGATCGATCAATTAACAT+TGG | - | chr1_4:16547822-16547841 | None:intergenic | 25.0% |
| ! | CAATGCAGTTACAAAAATTA+AGG | - | chr1_4:16547940-16547959 | None:intergenic | 25.0% |
| ! | AGTGGTAACAAAAAAAAAAG+GGG | - | chr1_4:16547979-16547998 | None:intergenic | 25.0% |
| ! | GTAGTGGTAACAAAAAAAAA+AGG | - | chr1_4:16547981-16548000 | None:intergenic | 25.0% |
| ! | AAACAATGCTTGAAAAATGA+AGG | + | chr1_4:16548086-16548105 | Msa0153290:intron | 25.0% |
| ! | AAATAGTTGGGAGTTATTAA+TGG | - | chr1_4:16548271-16548290 | None:intergenic | 25.0% |
| ! | TGTTGTGTGATGAAATTAAA+TGG | - | chr1_4:16548486-16548505 | None:intergenic | 25.0% |
| ! | AATGATATTAATCCTTGGAA+TGG | - | chr1_4:16548546-16548565 | None:intergenic | 25.0% |
| ! | TCTGAAAATTTCAACAATGA+AGG | + | chr1_4:16548594-16548613 | Msa0153290:CDS | 25.0% |
| ! | CTGAAAATTTCAACAATGAA+GGG | + | chr1_4:16548595-16548614 | Msa0153290:CDS | 25.0% |
| !!! | TATTGAAGAAGAAGTATTGT+TGG | - | chr1_4:16548763-16548782 | None:intergenic | 25.0% |
| ! | ATAGTTATGAGAAACATGAA+TGG | + | chr1_4:16548876-16548895 | Msa0153290:CDS | 25.0% |
| CACAAATAAACCTTTCTCTT+TGG | - | chr1_4:16545927-16545946 | None:intergenic | 30.0% | |
| AATATGCTGTTCAATCTGAT+TGG | + | chr1_4:16546069-16546088 | Msa0153290:CDS | 30.0% | |
| ! | ACGTATAAGTTGTTATTACC+TGG | - | chr1_4:16546156-16546175 | None:intergenic | 30.0% |
| TCGCAATAGAAAAATTGGAA+CGG | - | chr1_4:16546186-16546205 | None:intergenic | 30.0% | |
| AGAACTCGCAATAGAAAAAT+TGG | - | chr1_4:16546191-16546210 | None:intergenic | 30.0% | |
| ACCAGAAAATGTGATTGATA+TGG | + | chr1_4:16546316-16546335 | Msa0153290:intron | 30.0% | |
| ! | ACCATATCAATCACATTTTC+TGG | - | chr1_4:16546320-16546339 | None:intergenic | 30.0% |
| TCGCAGTTATAATCGAAATT+TGG | - | chr1_4:16546386-16546405 | None:intergenic | 30.0% | |
| !!! | CGAAACAATTTTTAAGACCA+TGG | + | chr1_4:16546403-16546422 | Msa0153290:intron | 30.0% |
| !!! | CAATTTTTAAGACCATGGAA+AGG | + | chr1_4:16546408-16546427 | Msa0153290:intron | 30.0% |
| AAAATTTCATCTCCTTTCCA+TGG | - | chr1_4:16546423-16546442 | None:intergenic | 30.0% | |
| GAAGGAATGATTGTTTGATT+TGG | + | chr1_4:16546459-16546478 | Msa0153290:intron | 30.0% | |
| ! | GTTTAGTTCATTTGGTCATT+TGG | + | chr1_4:16546481-16546500 | Msa0153290:intron | 30.0% |
| TTCATTTGGTCATTTGGATT+AGG | + | chr1_4:16546487-16546506 | Msa0153290:intron | 30.0% | |
| TCATTTGGTCATTTGGATTA+GGG | + | chr1_4:16546488-16546507 | Msa0153290:intron | 30.0% | |
| !! | TAGAAAAAGAAGAGCATCTT+AGG | - | chr1_4:16546550-16546569 | None:intergenic | 30.0% |
| TTTCAAAGATTATTCACGTG+GGG | - | chr1_4:16546700-16546719 | None:intergenic | 30.0% | |
| !! | AAAATAAGAAGCACCTACAA+AGG | - | chr1_4:16547271-16547290 | None:intergenic | 30.0% |
| !!! | TCTTATTTTGTGATAACGTC+AGG | + | chr1_4:16547282-16547301 | Msa0153290:intron | 30.0% |
| !!! | CTTATTTTGTGATAACGTCA+GGG | + | chr1_4:16547283-16547302 | Msa0153290:intron | 30.0% |
| TAGTACAAACAAGGAATAGA+GGG | - | chr1_4:16547335-16547354 | None:intergenic | 30.0% | |
| ATAGTACAAACAAGGAATAG+AGG | - | chr1_4:16547336-16547355 | None:intergenic | 30.0% | |
| ! | ACTATTTCCTTTTCCTCTTT+TGG | + | chr1_4:16547351-16547370 | Msa0153290:intron | 30.0% |
| AAATGTACCAAAAGAGGAAA+AGG | - | chr1_4:16547361-16547380 | None:intergenic | 30.0% | |
| AACATGACATTACTTACACA+CGG | + | chr1_4:16547456-16547475 | Msa0153290:intron | 30.0% | |
| TCACCTTTAGTTAGAATTGT+TGG | + | chr1_4:16547566-16547585 | Msa0153290:intron | 30.0% | |
| CACCTTTAGTTAGAATTGTT+GGG | + | chr1_4:16547567-16547586 | Msa0153290:intron | 30.0% | |
| TGTTAAAATGAAGATCGTCA+GGG | - | chr1_4:16547696-16547715 | None:intergenic | 30.0% | |
| ATGTTAAAATGAAGATCGTC+AGG | - | chr1_4:16547697-16547716 | None:intergenic | 30.0% | |
| AAAATGTTGTATACAGCGAA+AGG | + | chr1_4:16547872-16547891 | Msa0153290:intron | 30.0% | |
| ! | ATTTTTGTAACTGCATTGTG+TGG | + | chr1_4:16547942-16547961 | Msa0153290:intron | 30.0% |
| GTGGTAACAAAAAAAAAAGG+GGG | - | chr1_4:16547978-16547997 | None:intergenic | 30.0% | |
| AATGCTTGAAAAATGAAGGT+AGG | + | chr1_4:16548090-16548109 | Msa0153290:intron | 30.0% | |
| ! | TTGTTGAGGAATTTGAGATA+AGG | - | chr1_4:16548334-16548353 | None:intergenic | 30.0% |
| TGTGATGAAATTAAATGGAG+GGG | - | chr1_4:16548481-16548500 | None:intergenic | 30.0% | |
| GTGTGATGAAATTAAATGGA+GGG | - | chr1_4:16548482-16548501 | None:intergenic | 30.0% | |
| TGTGTGATGAAATTAAATGG+AGG | - | chr1_4:16548483-16548502 | None:intergenic | 30.0% | |
| ! | ATTGATCATGATGGTAGTTT+TGG | - | chr1_4:16548512-16548531 | None:intergenic | 30.0% |
| CTTCAAAAAGCTTCTCAAAT+GGG | + | chr1_4:16548714-16548733 | Msa0153290:CDS | 30.0% | |
| TCTTCAATACTAAGAAGCTT+TGG | + | chr1_4:16548774-16548793 | Msa0153290:CDS | 30.0% | |
| AAGTCAACGTAATTTCAACT+TGG | + | chr1_4:16548914-16548933 | Msa0153290:CDS | 30.0% | |
| ! | GCAGAGAATAATGGAAATAT+TGG | + | chr1_4:16548939-16548958 | Msa0153290:CDS | 30.0% |
| ! | GAGAATAATGGAAATATTGG+TGG | + | chr1_4:16548942-16548961 | Msa0153290:CDS | 30.0% |
| ! | AATAATGGAAATATTGGTGG+TGG | + | chr1_4:16548945-16548964 | Msa0153290:CDS | 30.0% |
| ! | CAAATCTGTTTGTTGCCATT+AGG | - | chr1_4:16545800-16545819 | None:intergenic | 35.0% |
| TATGTGAAGTGTGCCAAAAA+GGG | + | chr1_4:16545820-16545839 | Msa0153290:CDS | 35.0% | |
| ! | GTTGTAAATTTTGCTCCCTT+TGG | - | chr1_4:16545848-16545867 | None:intergenic | 35.0% |
| TAACAAAGAGCCAAAGAGAA+AGG | + | chr1_4:16545914-16545933 | Msa0153290:CDS | 35.0% | |
| ! | GAAAGCATGGTGAGAAAAAA+TGG | + | chr1_4:16546024-16546043 | Msa0153290:CDS | 35.0% |
| !! | AAAGCTCATTCTAAGACTTG+TGG | + | chr1_4:16546092-16546111 | Msa0153290:CDS | 35.0% |
| !! | TTCTAAGACTTGTGGTACTA+AGG | + | chr1_4:16546100-16546119 | Msa0153290:CDS | 35.0% |
| !!! | ATTAGAATTTTGGTGCCCAT+AGG | + | chr1_4:16546514-16546533 | Msa0153290:intron | 35.0% |
| !!! | TTAGAATTTTGGTGCCCATA+GGG | + | chr1_4:16546515-16546534 | Msa0153290:intron | 35.0% |
| TTCAAAGATTATTCACGTGG+GGG | - | chr1_4:16546699-16546718 | None:intergenic | 35.0% | |
| ! | ATTTGGGTTTATGTTATGCG+AGG | - | chr1_4:16547086-16547105 | None:intergenic | 35.0% |
| !! | CAGAGGAACTAATTTGTTGT+CGG | + | chr1_4:16547158-16547177 | Msa0153290:intron | 35.0% |
| GTGGATCAATTTATAGTCCT+CGG | - | chr1_4:16547193-16547212 | None:intergenic | 35.0% | |
| AGAGGGGAAAAGAAAAGATA+GGG | - | chr1_4:16547318-16547337 | None:intergenic | 35.0% | |
| TAGAGGGGAAAAGAAAAGAT+AGG | - | chr1_4:16547319-16547338 | None:intergenic | 35.0% | |
| AGTACAAACAAGGAATAGAG+GGG | - | chr1_4:16547334-16547353 | None:intergenic | 35.0% | |
| ! | ATTGTGAGGATGGACAATTT+TGG | - | chr1_4:16547537-16547556 | None:intergenic | 35.0% |
| TCTAACTAAAGGTGAACATG+TGG | - | chr1_4:16547561-16547580 | None:intergenic | 35.0% | |
| CACCCAACAATTCTAACTAA+AGG | - | chr1_4:16547572-16547591 | None:intergenic | 35.0% | |
| GCAAAAAAACCGAGTAGAAT+GGG | - | chr1_4:16547737-16547756 | None:intergenic | 35.0% | |
| !!! | ATCGGCGCCATTTTTTTTAA+TGG | - | chr1_4:16547759-16547778 | None:intergenic | 35.0% |
| GTTTCACGAAACATATCGAT+AGG | + | chr1_4:16547897-16547916 | Msa0153290:intron | 35.0% | |
| AGACAGTTTCATCACACATA+GGG | + | chr1_4:16548179-16548198 | Msa0153290:CDS | 35.0% | |
| !! | TAATGGAAGTGTTGGTGATT+AGG | - | chr1_4:16548254-16548273 | None:intergenic | 35.0% |
| ! | GGAGTTATTAATGGAAGTGT+TGG | - | chr1_4:16548262-16548281 | None:intergenic | 35.0% |
| ! | AGGAATTTGAGATAAGGCTA+AGG | - | chr1_4:16548328-16548347 | None:intergenic | 35.0% |
| ATGGAAGAGATATGTTGTTG+AGG | - | chr1_4:16548348-16548367 | None:intergenic | 35.0% | |
| AACGCAAGATTTCACTAGTT+TGG | - | chr1_4:16548392-16548411 | None:intergenic | 35.0% | |
| ! | ACTAGTGAAATCTTGCGTTT+TGG | + | chr1_4:16548393-16548412 | Msa0153290:CDS | 35.0% |
| ATTAATCCTTGGAATGGTTG+TGG | - | chr1_4:16548540-16548559 | None:intergenic | 35.0% | |
| CGGACAATGATATTAATCCT+TGG | - | chr1_4:16548551-16548570 | None:intergenic | 35.0% | |
| ! | CATGTTGTTGTTGTTGAGTT+CGG | - | chr1_4:16548571-16548590 | None:intergenic | 35.0% |
| GCTTCAAAAAGCTTCTCAAA+TGG | + | chr1_4:16548713-16548732 | Msa0153290:CDS | 35.0% | |
| !! | TGAAGAAGAAGTATTGTTGG+TGG | - | chr1_4:16548760-16548779 | None:intergenic | 35.0% |
| ! | ACTAGAGATTTTCTTGGAGT+TGG | + | chr1_4:16548849-16548868 | Msa0153290:CDS | 35.0% |
| GTTATGAGAAACATGAATGG+AGG | + | chr1_4:16548879-16548898 | Msa0153290:CDS | 35.0% | |
| AACTTGGAAGCAGAGAATAA+TGG | + | chr1_4:16548930-16548949 | Msa0153290:CDS | 35.0% | |
| TTTGTTGCCATTAGGCTCTT+GGG | - | chr1_4:16545792-16545811 | None:intergenic | 40.0% | |
| GTATGTGAAGTGTGCCAAAA+AGG | + | chr1_4:16545819-16545838 | Msa0153290:CDS | 40.0% | |
| !! | CTCTTTTGCTTTAGCTTCCA+AGG | - | chr1_4:16545894-16545913 | None:intergenic | 40.0% |
| ! | AAGGAGTATAGATGTGACTG+TGG | + | chr1_4:16546119-16546138 | Msa0153290:CDS | 40.0% |
| TATTGCGAGTTCTTTCGCTA+TGG | + | chr1_4:16546198-16546217 | Msa0153290:intron | 40.0% | |
| ! | ATCTTGCCCTCATAGTTTGT+AGG | + | chr1_4:16546642-16546661 | Msa0153290:intron | 40.0% |
| ! | TCTTGCCCTCATAGTTTGTA+GGG | + | chr1_4:16546643-16546662 | Msa0153290:intron | 40.0% |
| TCAAAGATTATTCACGTGGG+GGG | - | chr1_4:16546698-16546717 | None:intergenic | 40.0% | |
| ! | ACCTTGGAAACACCCTATTT+TGG | + | chr1_4:16546838-16546857 | Msa0153290:intron | 40.0% |
| ! | TCCAAAATAGGGTGTTTCCA+AGG | - | chr1_4:16546842-16546861 | None:intergenic | 40.0% |
| CAACTCACTAGAGAACAATG+TGG | - | chr1_4:16547212-16547231 | None:intergenic | 40.0% | |
| CACATTGTTCTCTAGTGAGT+TGG | + | chr1_4:16547210-16547229 | Msa0153290:intron | 40.0% | |
| GTTGTGATAACACAACGTGT+AGG | - | chr1_4:16547415-16547434 | None:intergenic | 40.0% | |
| !! | GAGGATGGACAATTTTGGTA+AGG | - | chr1_4:16547532-16547551 | None:intergenic | 40.0% |
| AACATGTGGTATTGTGAGGA+TGG | - | chr1_4:16547547-16547566 | None:intergenic | 40.0% | |
| ATTGTTGGGTGATGATTGAG+TGG | + | chr1_4:16547581-16547600 | Msa0153290:intron | 40.0% | |
| GTACGATTACCCATTCTACT+CGG | + | chr1_4:16547725-16547744 | Msa0153290:intron | 40.0% | |
| GGCAAAAAAACCGAGTAGAA+TGG | - | chr1_4:16547738-16547757 | None:intergenic | 40.0% | |
| TTGTAACTGCATTGTGTGGT+TGG | + | chr1_4:16547946-16547965 | Msa0153290:intron | 40.0% | |
| ! | TACCACTACACTTAGCCTTT+CGG | + | chr1_4:16547992-16548011 | Msa0153290:intron | 40.0% |
| GAGACAGTTTCATCACACAT+AGG | + | chr1_4:16548178-16548197 | Msa0153290:CDS | 40.0% | |
| TTGAGCTAGTGCATCACAAA+AGG | - | chr1_4:16548205-16548224 | None:intergenic | 40.0% | |
| ! | TTGGTGATTAGGTTTGGTTG+TGG | - | chr1_4:16548243-16548262 | None:intergenic | 40.0% |
| !! | GAAGTGTTGGTGATTAGGTT+TGG | - | chr1_4:16548249-16548268 | None:intergenic | 40.0% |
| CAACATATCTCTTCCATCCA+TGG | + | chr1_4:16548351-16548370 | Msa0153290:CDS | 40.0% | |
| !! | TAGTTTGGTTGCTGTCGTTT+TGG | - | chr1_4:16548377-16548396 | None:intergenic | 40.0% |
| !! | GTTTGAAGAGTTTGTTGTGG+GGG | - | chr1_4:16548459-16548478 | None:intergenic | 40.0% |
| !! | GGTTTGAAGAGTTTGTTGTG+GGG | - | chr1_4:16548460-16548479 | None:intergenic | 40.0% |
| !! | GGGTTTGAAGAGTTTGTTGT+GGG | - | chr1_4:16548461-16548480 | None:intergenic | 40.0% |
| GTGGTTGTGATTGATCATGA+TGG | - | chr1_4:16548521-16548540 | None:intergenic | 40.0% | |
| !! | AGAAGAAGTATTGTTGGTGG+TGG | - | chr1_4:16548757-16548776 | None:intergenic | 40.0% |
| ATTAACCTTTGTTGCTGCAG+AGG | - | chr1_4:16548811-16548830 | None:intergenic | 40.0% | |
| TCTGCAGCAACAAAGGTTAA+TGG | + | chr1_4:16548810-16548829 | Msa0153290:CDS | 40.0% | |
| ! | GGACTCACTAGAGATTTTCT+TGG | + | chr1_4:16548843-16548862 | Msa0153290:CDS | 40.0% |
| AGAAACATGAATGGAGGAGT+TGG | + | chr1_4:16548885-16548904 | Msa0153290:CDS | 40.0% | |
| !! | AATGGAAATATTGGTGGTGG+AGG | + | chr1_4:16548948-16548967 | Msa0153290:CDS | 40.0% |
| !! | ATGGAAATATTGGTGGTGGA+GGG | + | chr1_4:16548949-16548968 | Msa0153290:CDS | 40.0% |
| AGTGCTATCACTTCTGCATC+TGG | - | chr1_4:16545765-16545784 | None:intergenic | 45.0% | |
| ACTATCTCCCAAGAGCCTAA+TGG | + | chr1_4:16545782-16545801 | Msa0153290:CDS | 45.0% | |
| ! | GTTTGTTGCCATTAGGCTCT+TGG | - | chr1_4:16545793-16545812 | None:intergenic | 45.0% |
| TGTGCCAAAAAGGGTTCCAA+AGG | + | chr1_4:16545829-16545848 | Msa0153290:CDS | 45.0% | |
| GTGCCAAAAAGGGTTCCAAA+GGG | + | chr1_4:16545830-16545849 | Msa0153290:CDS | 45.0% | |
| GAAGAGGACACAATTTGCCT+TGG | + | chr1_4:16545874-16545893 | Msa0153290:CDS | 45.0% | |
| !! | TGGTGAACACATGTTGGTTC+TGG | - | chr1_4:16545951-16545970 | None:intergenic | 45.0% |
| TGTTCACCATGACCCTTCAA+GGG | + | chr1_4:16545962-16545981 | Msa0153290:CDS | 45.0% | |
| GATGCTCTACAACAGTTGCA+CGG | - | chr1_4:16546364-16546383 | None:intergenic | 45.0% | |
| ! | TTAGGCCTTTTCCACCCTAT+GGG | - | chr1_4:16546532-16546551 | None:intergenic | 45.0% |
| CTATGAGGGCAAGATGACAA+AGG | - | chr1_4:16546637-16546656 | None:intergenic | 45.0% | |
| GGTGACCCTACAAACTATGA+GGG | - | chr1_4:16546651-16546670 | None:intergenic | 45.0% | |
| TGGTGACCCTACAAACTATG+AGG | - | chr1_4:16546652-16546671 | None:intergenic | 45.0% | |
| GTTGTCGGTATGAAAATCCG+AGG | + | chr1_4:16547173-16547192 | Msa0153290:intron | 45.0% | |
| TCAGTAACGTGCTCCTTTGT+AGG | + | chr1_4:16547255-16547274 | Msa0153290:intron | 45.0% | |
| GGTGAACATGTGGTATTGTG+AGG | - | chr1_4:16547551-16547570 | None:intergenic | 45.0% | |
| TAACTGCATTGTGTGGTTGG+TGG | + | chr1_4:16547949-16547968 | Msa0153290:intron | 45.0% | |
| AACTGCATTGTGTGGTTGGT+GGG | + | chr1_4:16547950-16547969 | Msa0153290:intron | 45.0% | |
| ! | ACCACTACACTTAGCCTTTC+GGG | + | chr1_4:16547993-16548012 | Msa0153290:intron | 45.0% |
| !! | GGGGTTTGAAGAGTTTGTTG+TGG | - | chr1_4:16548462-16548481 | None:intergenic | 45.0% |
| TCACAACCACAACCATTCCA+AGG | + | chr1_4:16548531-16548550 | Msa0153290:CDS | 45.0% | |
| CTGACATGTGAGGAGAGATA+GGG | - | chr1_4:16548683-16548702 | None:intergenic | 45.0% | |
| AAAGCTGTTGCTGACATGTG+AGG | - | chr1_4:16548693-16548712 | None:intergenic | 45.0% | |
| !! | AGAAGTATTGTTGGTGGTGG+TGG | - | chr1_4:16548754-16548773 | None:intergenic | 45.0% |
| TTCTTCCTCTGCAGCAACAA+AGG | + | chr1_4:16548803-16548822 | Msa0153290:CDS | 45.0% | |
| GCAGCAACAAAGGTTAATGG+TGG | + | chr1_4:16548813-16548832 | Msa0153290:CDS | 45.0% | |
| GCAACAAAGGTTAATGGTGG+TGG | + | chr1_4:16548816-16548835 | Msa0153290:CDS | 45.0% | |
| !! | AAGGTTAATGGTGGTGGTGA+TGG | + | chr1_4:16548822-16548841 | Msa0153290:CDS | 45.0% |
| !! | TTTAGTAATATATATTATAA+TGG | - | chr1_4:16547000-16547019 | None:intergenic | 5.0% |
| !!! | GCTCCCTTTGGAACCCTTTT+TGG | - | chr1_4:16545836-16545855 | None:intergenic | 50.0% |
| GGGTCATGGTGAACACATGT+TGG | - | chr1_4:16545957-16545976 | None:intergenic | 50.0% | |
| GTGTTCACCATGACCCTTCA+AGG | + | chr1_4:16545961-16545980 | Msa0153290:CDS | 50.0% | |
| GATCACCAAGTGCCCTTGAA+GGG | - | chr1_4:16545977-16545996 | None:intergenic | 50.0% | |
| AGATCACCAAGTGCCCTTGA+AGG | - | chr1_4:16545978-16545997 | None:intergenic | 50.0% | |
| ACTGTGGTACTCTCTTCTCC+AGG | + | chr1_4:16546135-16546154 | Msa0153290:CDS | 50.0% | |
| !!! | GAATTTTGGTGCCCATAGGG+TGG | + | chr1_4:16546518-16546537 | Msa0153290:intron | 50.0% |
| ! | CTTAGGCCTTTTCCACCCTA+TGG | - | chr1_4:16546533-16546552 | None:intergenic | 50.0% |
| ! | ACTGCATTGTGTGGTTGGTG+GGG | + | chr1_4:16547951-16547970 | Msa0153290:intron | 50.0% |
| TCCCGAAAGGCTAAGTGTAG+TGG | - | chr1_4:16547997-16548016 | None:intergenic | 50.0% | |
| !! | AAGAGTTTGTTGTGGGGGTG+GGG | - | chr1_4:16548454-16548473 | None:intergenic | 50.0% |
| !! | GAAGAGTTTGTTGTGGGGGT+GGG | - | chr1_4:16548455-16548474 | None:intergenic | 50.0% |
| !! | TGAAGAGTTTGTTGTGGGGG+TGG | - | chr1_4:16548456-16548475 | None:intergenic | 50.0% |
| AGATAGGGCTTGCGCTTGTT+TGG | - | chr1_4:16548668-16548687 | None:intergenic | 50.0% | |
| GCTGACATGTGAGGAGAGAT+AGG | - | chr1_4:16548684-16548703 | None:intergenic | 50.0% | |
| CAAGTGCCCTTGAAGGGTCA+TGG | - | chr1_4:16545971-16545990 | None:intergenic | 55.0% | |
| !! | CATGACCCTTCAAGGGCACT+TGG | + | chr1_4:16545969-16545988 | Msa0153290:CDS | 55.0% |
| ! | AGGGCACTTGGTGATCTCAC+TGG | + | chr1_4:16545981-16546000 | Msa0153290:CDS | 55.0% |
| TGGTGCCCATAGGGTGGAAA+AGG | + | chr1_4:16546524-16546543 | Msa0153290:intron | 55.0% | |
| !!! | GCTGTCGTTTTGGCCATGGA+TGG | - | chr1_4:16548367-16548386 | None:intergenic | 55.0% |
| !!! | GGTTGCTGTCGTTTTGGCCA+TGG | - | chr1_4:16548371-16548390 | None:intergenic | 55.0% |
| GCCTTTCGGGATGCTTTCGC+TGG | + | chr1_4:16548006-16548025 | Msa0153290:intron | 60.0% | |
| !! | GCCAGCGAAAGCATCCCGAA+AGG | - | chr1_4:16548010-16548029 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 16545750 | 16548983 | 16545750 | ID=Msa0153290;Name=Msa0153290 |
| chr1_4 | mRNA | 16545750 | 16548983 | 16545750 | ID=Msa0153290-mRNA-1;Parent=Msa0153290;Name=Msa0153290-mRNA-1;_AED=0.17;_eAED=0.21;_QI=0|0|0|1|1|1|2|0|404 |
| chr1_4 | exon | 16545750 | 16546156 | 16545750 | ID=Msa0153290-mRNA-1:exon:6348;Parent=Msa0153290-mRNA-1 |
| chr1_4 | exon | 16548176 | 16548983 | 16548176 | ID=Msa0153290-mRNA-1:exon:6349;Parent=Msa0153290-mRNA-1 |
| chr1_4 | CDS | 16545750 | 16546156 | 16545750 | ID=Msa0153290-mRNA-1:cds;Parent=Msa0153290-mRNA-1 |
| chr1_4 | CDS | 16548176 | 16548983 | 16548176 | ID=Msa0153290-mRNA-1:cds;Parent=Msa0153290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
