AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1284040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284040 MtrunA17_Chr8g0355821 96.104 154 6 0 1 154 1 154 1.52e-109 308
Msa1284040 MtrunA17_Chr8g0355811 90.385 156 15 0 1 156 1 156 8.75e-105 296
Msa1284040 MtrunA17_Chr8g0355801 85.256 156 23 0 1 156 1 156 9.14e-98 278
Msa1284040 MtrunA17_Chr8g0355791 83.333 156 26 0 1 156 1 156 2.13e-94 270
Msa1284040 MtrunA17_Chr8g0355771 82.051 156 28 0 1 156 1 156 2.90e-93 267
Msa1284040 MtrunA17_Chr8g0355741 75.159 157 38 1 1 156 1 157 1.40e-85 247
Msa1284040 MtrunA17_Chr8g0355721 71.975 157 42 2 1 156 1 156 7.63e-82 238
Msa1284040 MtrunA17_Chr8g0355661 71.338 157 43 2 1 156 1 156 1.57e-80 234
Msa1284040 MtrunA17_Chr8g0355781 68.421 152 47 1 1 151 1 152 1.04e-76 225
Msa1284040 MtrunA17_Chr8g0355761 69.079 152 46 1 1 151 1 152 1.06e-76 225
Msa1284040 MtrunA17_Chr8g0355641 66.026 156 52 1 1 155 1 156 8.55e-76 223
Msa1284040 MtrunA17_Chr1g0160371 41.830 153 85 3 1 150 1 152 3.26e-39 130
Msa1284040 MtrunA17_Chr1g0160381 38.562 153 90 3 1 150 5 156 1.90e-37 125
Msa1284040 MtrunA17_Chr1g0160391 37.821 156 88 5 1 148 1 155 3.52e-28 102
Msa1284040 MtrunA17_Chr8g0339261 34.667 150 94 4 6 153 8 155 2.31e-26 97.4
Msa1284040 MtrunA17_Chr1g0160801 37.838 148 82 6 7 151 7 147 3.68e-22 86.3
Msa1284040 MtrunA17_Chr1g0160351 40.860 93 52 2 61 150 1 93 2.34e-20 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284040 AT5G28010.1 35.948 153 94 4 3 152 15 166 4.26e-26 97.4
Msa1284040 AT5G28010.2 35.948 153 94 4 3 152 15 166 4.26e-26 97.4
Msa1284040 AT1G70890.1 37.255 153 92 4 3 152 7 158 2.30e-24 92.8
Msa1284040 AT1G70840.1 35.948 153 94 4 3 152 20 171 3.91e-24 92.4
Msa1284040 AT1G70830.5 36.538 156 89 5 3 152 22 173 3.03e-23 90.1
Msa1284040 AT1G70830.3 36.306 157 90 5 3 153 22 174 3.24e-23 90.9
Msa1284040 AT5G28000.1 33.987 153 97 4 3 152 13 164 3.86e-23 89.7
Msa1284040 AT1G70830.2 36.306 157 90 5 3 153 22 174 2.46e-22 89.7
Msa1284040 AT1G70830.4 36.538 156 89 5 3 152 137 288 3.83e-22 90.1
Msa1284040 AT1G70830.4 35.052 97 61 2 59 153 31 127 3.16e-12 63.2
Msa1284040 AT1G70830.1 36.306 157 90 5 3 153 22 174 4.54e-22 90.5
Msa1284040 AT1G70830.1 36.538 156 89 5 3 152 184 335 1.14e-21 89.4
Msa1284040 AT1G70850.3 37.671 146 81 5 13 152 175 316 1.43e-21 89.0
Msa1284040 AT1G70850.3 34.641 153 90 5 3 149 9 157 1.37e-20 86.3
Msa1284040 AT1G70850.1 37.671 146 81 5 13 152 175 316 1.43e-21 89.0
Msa1284040 AT1G70850.1 34.641 153 90 5 3 149 9 157 1.37e-20 86.3
Msa1284040 AT1G70850.2 34.416 154 91 5 3 150 9 158 5.32e-21 85.9
Msa1284040 AT1G70870.1 45.833 96 50 2 56 150 44 138 1.31e-20 82.4
Msa1284040 AT4G23670.1 33.750 160 88 6 1 151 1 151 3.58e-20 81.6
Msa1284040 AT1G14930.1 29.560 159 104 5 1 155 1 155 6.45e-20 81.3
Msa1284040 AT2G01520.1 29.677 155 101 5 1 151 1 151 1.14e-18 77.8
Msa1284040 AT1G23120.1 29.078 141 94 4 10 149 10 145 3.35e-17 73.9
Msa1284040 AT2G01530.1 30.323 155 100 5 1 151 1 151 6.72e-17 73.2
Msa1284040 AT1G23120.2 29.078 141 94 4 10 149 60 195 9.42e-17 73.9
Msa1284040 AT4G14060.1 29.677 155 101 5 1 151 1 151 1.01e-16 72.8
Msa1284040 AT4G23680.1 29.221 154 101 5 1 150 1 150 1.61e-16 72.4
Msa1284040 AT1G70880.1 30.065 153 103 4 3 152 8 159 1.76e-16 72.4
Msa1284040 AT1G14940.1 28.302 159 106 5 1 155 1 155 1.93e-16 72.0
Msa1284040 AT1G24020.1 30.921 152 102 3 1 150 1 151 2.22e-16 72.0
Msa1284040 AT1G24020.2 30.921 152 102 3 1 150 1 151 2.22e-16 72.0
Msa1284040 AT1G23130.1 27.517 149 105 3 3 149 10 157 2.09e-15 69.7
Msa1284040 AT1G14950.1 27.044 159 108 5 1 155 1 155 6.91e-15 68.2
Msa1284040 AT1G30990.1 27.815 151 104 5 1 149 1 148 1.36e-14 67.4
Msa1284040 AT1G35260.1 29.932 147 92 5 9 149 8 149 1.65e-14 67.0
Msa1284040 AT3G26460.1 29.677 155 102 4 1 151 1 152 3.42e-14 66.2
Msa1284040 AT1G14960.1 25.161 155 112 4 1 153 1 153 2.29e-12 61.6
Msa1284040 AT3G26450.1 26.923 156 105 6 1 151 1 152 9.25e-12 59.7

Find 44 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACACCATGTGTTTAAATA+AGG 0.277238 8_3:-26022182 Msa1284040:three_prime_UTR
GAAGACATTAATATTAAATA+AGG 0.331363 8_3:-26022242 Msa1284040:three_prime_UTR
AAGATGACCATCAATATCTT+TGG 0.335693 8_3:+26022297 None:intergenic
TTATGTGTGATGCAAATAAA+TGG 0.338325 8_3:-26022081 Msa1284040:three_prime_UTR
AAGATAACTTTCAAGCTGTT+TGG 0.342098 8_3:-26022475 Msa1284040:CDS
ATGGAAGTTCTGCTGTTAGA+TGG 0.407851 8_3:-26022393 Msa1284040:CDS
TATCTTTGGTTCCTTTGCTC+AGG 0.433031 8_3:+26022311 None:intergenic
ATAAGGACGTCTGGTCCAAT+GGG 0.433127 8_3:-26022225 Msa1284040:three_prime_UTR
TGGAGATATTGAAAACTATA+AGG 0.439418 8_3:-26022452 Msa1284040:CDS
AGGTAGTCCATCCAGCCATT+TGG 0.459022 8_3:+26022331 None:intergenic
TAATATTAAATAAGGACGTC+TGG 0.466074 8_3:-26022234 Msa1284040:three_prime_UTR
AAAGGAACCAAAGATATTGA+TGG 0.479926 8_3:-26022304 Msa1284040:CDS
ATAACTTTCAAGCTGTTTGG+TGG 0.481618 8_3:-26022472 Msa1284040:CDS
TAAACATTGGACTTATGTCA+TGG 0.493433 8_3:-26024111 Msa1284040:CDS
GGTAAACTTATCACTGAACT+TGG 0.495374 8_3:-26024263 Msa1284040:CDS
AATAAGGACGTCTGGTCCAA+TGG 0.502748 8_3:-26022226 Msa1284040:three_prime_UTR
AGATTGGCATCACACTGATT+CGG 0.509801 8_3:-26024135 Msa1284040:CDS
TAACATAACAACAGATGGTA+AGG 0.518649 8_3:-26022545 Msa1284040:intron
AGCTTCATGAAGGAGAAGAT+TGG 0.532439 8_3:-26024151 Msa1284040:CDS
TGCACAAAAGCCAACCCCAT+TGG 0.544479 8_3:+26022210 None:intergenic
GACGTCTGGTCCAATGGGGT+TGG 0.549241 8_3:-26022220 Msa1284040:three_prime_UTR
ACACTGATTCGGTTAAACAT+TGG 0.558454 8_3:-26024124 Msa1284040:CDS
TGTGTTTAAATAAGGACGTA+TGG 0.561712 8_3:-26022174 Msa1284040:three_prime_UTR
CATCATACTAAGCTTCATGA+AGG 0.577072 8_3:-26024161 Msa1284040:CDS
ATGTTGATACTCCAAATGGC+TGG 0.578150 8_3:-26022342 Msa1284040:CDS
GAAGTGCTTAACAAGGCTGA+TGG 0.580204 8_3:-26022412 Msa1284040:CDS
ATTGATGGTCATCTTGTCAA+GGG 0.586933 8_3:-26022289 Msa1284040:CDS
TGATACTCCAAATGGCTGGA+TGG 0.587093 8_3:-26022338 Msa1284040:CDS
AAACATTGGACTTATGTCAT+GGG 0.587276 8_3:-26024110 Msa1284040:intron
TATTGATGGTCATCTTGTCA+AGG 0.589389 8_3:-26022290 Msa1284040:CDS
TACGTCCTTATTTAAACACA+TGG 0.590941 8_3:+26022177 None:intergenic
GAGGATGTTGATACTCCAAA+TGG 0.593330 8_3:-26022346 Msa1284040:CDS
GTAAACTTATCACTGAACTT+GGG 0.617151 8_3:-26024262 Msa1284040:CDS
AGGTACACACATGCAATGAG+AGG 0.626711 8_3:-26022525 Msa1284040:CDS
TGGATGGACTACCTGAGCAA+AGG 0.638104 8_3:-26022322 Msa1284040:CDS
CATCTTAGAAGTGCTTAACA+AGG 0.644958 8_3:-26022419 Msa1284040:CDS
TTGATGGTCATCTTGTCAAG+GGG 0.646397 8_3:-26022288 Msa1284040:CDS
ATGTTTGTATTCAATAAATG+TGG 0.646664 8_3:-26022121 Msa1284040:three_prime_UTR
GAACTTGGGATCAAAACACC+CGG 0.651017 8_3:-26024248 Msa1284040:CDS
AACAAACTATTTAAACACAT+AGG 0.669401 8_3:+26022150 None:intergenic
GGTACACACATGCAATGAGA+GGG 0.691358 8_3:-26022524 Msa1284040:CDS
TGATTATGAGAAGAACAATG+AGG 0.694185 8_3:-26022365 Msa1284040:CDS
TGATGGTCATCTTGTCAAGG+GGG 0.696400 8_3:-26022287 Msa1284040:CDS
TAAGGACGTCTGGTCCAATG+GGG 0.726492 8_3:-26022224 Msa1284040:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTAATAAACGTATTA+TGG + chr8_3:26022649-26022668 None:intergenic 10.0%
!!! AAAATGTTTTTTATTGTTTT+TGG - chr8_3:26023811-26023830 Msa1284040:intron 10.0%
!! ATTTATTAATAAACGTATTA+TGG + chr8_3:26022649-26022668 None:intergenic 10.0%
!!! AAAATGTTTTTTATTGTTTT+TGG - chr8_3:26023811-26023830 Msa1284040:intron 10.0%
!!! AAGAAAAATTATACTTTTCA+AGG - chr8_3:26022440-26022459 Msa1284040:CDS 15.0%
!! ATTATAAATGAAGTCAATAT+AGG + chr8_3:26022564-26022583 None:intergenic 15.0%
!! AATGTTGAATATTTGAAAAT+GGG - chr8_3:26022696-26022715 Msa1284040:intron 15.0%
!! GGGTAAAATTAAATAAAAAA+AGG - chr8_3:26022716-26022735 Msa1284040:intron 15.0%
!!! TATTAAAGTCAAACTTTTAT+CGG - chr8_3:26023464-26023483 Msa1284040:intron 15.0%
!!! TAAGATAAAGTTTTTACTTT+TGG - chr8_3:26023726-26023745 Msa1284040:intron 15.0%
!! GAAGACATTAATATTAAATA+AGG - chr8_3:26024150-26024169 Msa1284040:CDS 15.0%
!!! AAGAAAAATTATACTTTTCA+AGG - chr8_3:26022440-26022459 Msa1284040:CDS 15.0%
!! ATTATAAATGAAGTCAATAT+AGG + chr8_3:26022564-26022583 None:intergenic 15.0%
!! AATGTTGAATATTTGAAAAT+GGG - chr8_3:26022696-26022715 Msa1284040:intron 15.0%
!! GGGTAAAATTAAATAAAAAA+AGG - chr8_3:26022716-26022735 Msa1284040:intron 15.0%
!!! TATTAAAGTCAAACTTTTAT+CGG - chr8_3:26023464-26023483 Msa1284040:intron 15.0%
!!! TAAGATAAAGTTTTTACTTT+TGG - chr8_3:26023726-26023745 Msa1284040:intron 15.0%
!! GAAGACATTAATATTAAATA+AGG - chr8_3:26024150-26024169 Msa1284040:CDS 15.0%
!! AGAGAAGAAAGAAAAAATAA+GGG + chr8_3:26022064-26022083 None:intergenic 20.0%
!! AAGAGAAGAAAGAAAAAATA+AGG + chr8_3:26022065-26022084 None:intergenic 20.0%
!! TATAAGTTTCTTTCCAAAAA+TGG - chr8_3:26022098-26022117 Msa1284040:three_prime_UTR 20.0%
!! GAATGTTGAATATTTGAAAA+TGG - chr8_3:26022695-26022714 Msa1284040:intron 20.0%
!! TATTACATACAACTCATATA+GGG + chr8_3:26022811-26022830 None:intergenic 20.0%
!! ATTTATCTTTCTAGATCTAA+TGG - chr8_3:26022867-26022886 Msa1284040:intron 20.0%
!!! TTATTGTATTTTCTCTCTTT+GGG + chr8_3:26023241-26023260 None:intergenic 20.0%
!!! ATTATTGTATTTTCTCTCTT+TGG + chr8_3:26023242-26023261 None:intergenic 20.0%
!! ATCAAAAATCAAATATCACA+AGG + chr8_3:26023435-26023454 None:intergenic 20.0%
!! ATCATAAAAACCTAATGATA+AGG + chr8_3:26023562-26023581 None:intergenic 20.0%
!!! TTAGGTTTTTATGATTTCTT+TGG - chr8_3:26023567-26023586 Msa1284040:intron 20.0%
!!! TGGTGAAACTAATATTTTTA+AGG - chr8_3:26023587-26023606 Msa1284040:intron 20.0%
!! AACAAACTATTTAAACACAT+AGG + chr8_3:26024245-26024264 None:intergenic 20.0%
!! ATGTTTGTATTCAATAAATG+TGG - chr8_3:26024271-26024290 Msa1284040:CDS 20.0%
!! AGAGAAGAAAGAAAAAATAA+GGG + chr8_3:26022064-26022083 None:intergenic 20.0%
!! AAGAGAAGAAAGAAAAAATA+AGG + chr8_3:26022065-26022084 None:intergenic 20.0%
!! TATAAGTTTCTTTCCAAAAA+TGG - chr8_3:26022098-26022117 Msa1284040:three_prime_UTR 20.0%
!! GAATGTTGAATATTTGAAAA+TGG - chr8_3:26022695-26022714 Msa1284040:intron 20.0%
!! TATTACATACAACTCATATA+GGG + chr8_3:26022811-26022830 None:intergenic 20.0%
!! ATTTATCTTTCTAGATCTAA+TGG - chr8_3:26022867-26022886 Msa1284040:intron 20.0%
!!! TTATTGTATTTTCTCTCTTT+GGG + chr8_3:26023241-26023260 None:intergenic 20.0%
!!! ATTATTGTATTTTCTCTCTT+TGG + chr8_3:26023242-26023261 None:intergenic 20.0%
!! ATCAAAAATCAAATATCACA+AGG + chr8_3:26023435-26023454 None:intergenic 20.0%
!! ATCATAAAAACCTAATGATA+AGG + chr8_3:26023562-26023581 None:intergenic 20.0%
!!! TTAGGTTTTTATGATTTCTT+TGG - chr8_3:26023567-26023586 Msa1284040:intron 20.0%
!!! TGGTGAAACTAATATTTTTA+AGG - chr8_3:26023587-26023606 Msa1284040:intron 20.0%
!! AACAAACTATTTAAACACAT+AGG + chr8_3:26024245-26024264 None:intergenic 20.0%
!! ATGTTTGTATTCAATAAATG+TGG - chr8_3:26024271-26024290 Msa1284040:CDS 20.0%
! TTCTTAGACAAATTGTAGTA+CGG + chr8_3:26022425-26022444 None:intergenic 25.0%
!!! TACTTTTCAAGGCAATAATA+TGG - chr8_3:26022451-26022470 Msa1284040:CDS 25.0%
! ATTGCCTTTATAAGTTCTTT+AGG + chr8_3:26022478-26022497 None:intergenic 25.0%
! ATTACATACAACTCATATAG+GGG + chr8_3:26022810-26022829 None:intergenic 25.0%
! CTATTACATACAACTCATAT+AGG + chr8_3:26022812-26022831 None:intergenic 25.0%
!!! AATTTTTCGATCTAGTGTAA+TGG - chr8_3:26022975-26022994 Msa1284040:intron 25.0%
!!! GTAATGGATAAGTAATTACA+TGG - chr8_3:26022991-26023010 Msa1284040:intron 25.0%
! ATAAAATTGCAGAATGATAG+AGG - chr8_3:26023105-26023124 Msa1284040:intron 25.0%
! TAAAATTGCAGAATGATAGA+GGG - chr8_3:26023106-26023125 Msa1284040:intron 25.0%
! ATAGAGGGAAATTATTGTTA+AGG - chr8_3:26023121-26023140 Msa1284040:intron 25.0%
!!! ATTTTACTAATGAAGAGTAC+AGG - chr8_3:26023202-26023221 Msa1284040:intron 25.0%
! CAAATCAAATTGTGTTCAAA+TGG + chr8_3:26023294-26023313 None:intergenic 25.0%
!!! CTGTTTAGGTTATTTTGATT+AGG + chr8_3:26023324-26023343 None:intergenic 25.0%
!!! AACTTGTTCACTTTTTGTTT+TGG + chr8_3:26023353-26023372 None:intergenic 25.0%
!!! TATTTGATTTTTGATCCTTG+TGG - chr8_3:26023440-26023459 Msa1284040:intron 25.0%
! AATGCTAACAAATGTTCTTA+AGG + chr8_3:26023766-26023785 None:intergenic 25.0%
! TGGAGATATTGAAAACTATA+AGG - chr8_3:26023940-26023959 Msa1284040:intron 25.0%
! TAATATTAAATAAGGACGTC+TGG - chr8_3:26024158-26024177 Msa1284040:CDS 25.0%
! TTACACCATGTGTTTAAATA+AGG - chr8_3:26024210-26024229 Msa1284040:CDS 25.0%
! TTATGTGTGATGCAAATAAA+TGG - chr8_3:26024311-26024330 Msa1284040:five_prime_UTR 25.0%
! TTCTTAGACAAATTGTAGTA+CGG + chr8_3:26022425-26022444 None:intergenic 25.0%
!!! TACTTTTCAAGGCAATAATA+TGG - chr8_3:26022451-26022470 Msa1284040:CDS 25.0%
! ATTGCCTTTATAAGTTCTTT+AGG + chr8_3:26022478-26022497 None:intergenic 25.0%
! ATTACATACAACTCATATAG+GGG + chr8_3:26022810-26022829 None:intergenic 25.0%
! CTATTACATACAACTCATAT+AGG + chr8_3:26022812-26022831 None:intergenic 25.0%
!!! AATTTTTCGATCTAGTGTAA+TGG - chr8_3:26022975-26022994 Msa1284040:intron 25.0%
!!! GTAATGGATAAGTAATTACA+TGG - chr8_3:26022991-26023010 Msa1284040:intron 25.0%
! ATAAAATTGCAGAATGATAG+AGG - chr8_3:26023105-26023124 Msa1284040:intron 25.0%
! TAAAATTGCAGAATGATAGA+GGG - chr8_3:26023106-26023125 Msa1284040:intron 25.0%
! ATAGAGGGAAATTATTGTTA+AGG - chr8_3:26023121-26023140 Msa1284040:intron 25.0%
!!! ATTTTACTAATGAAGAGTAC+AGG - chr8_3:26023202-26023221 Msa1284040:intron 25.0%
! CAAATCAAATTGTGTTCAAA+TGG + chr8_3:26023294-26023313 None:intergenic 25.0%
!!! CTGTTTAGGTTATTTTGATT+AGG + chr8_3:26023324-26023343 None:intergenic 25.0%
!!! AACTTGTTCACTTTTTGTTT+TGG + chr8_3:26023353-26023372 None:intergenic 25.0%
!!! TATTTGATTTTTGATCCTTG+TGG - chr8_3:26023440-26023459 Msa1284040:intron 25.0%
! AATGCTAACAAATGTTCTTA+AGG + chr8_3:26023766-26023785 None:intergenic 25.0%
! TGGAGATATTGAAAACTATA+AGG - chr8_3:26023940-26023959 Msa1284040:intron 25.0%
! TAATATTAAATAAGGACGTC+TGG - chr8_3:26024158-26024177 Msa1284040:CDS 25.0%
! TTACACCATGTGTTTAAATA+AGG - chr8_3:26024210-26024229 Msa1284040:CDS 25.0%
! TTATGTGTGATGCAAATAAA+TGG - chr8_3:26024311-26024330 Msa1284040:five_prime_UTR 25.0%
GTAAACTTATCACTGAACTT+GGG - chr8_3:26022130-26022149 Msa1284040:three_prime_UTR 30.0%
! TAGTTTGAAGAACTTTTCAC+CGG + chr8_3:26022166-26022185 None:intergenic 30.0%
TAAACATTGGACTTATGTCA+TGG - chr8_3:26022281-26022300 Msa1284040:CDS 30.0%
AAACATTGGACTTATGTCAT+GGG - chr8_3:26022282-26022301 Msa1284040:CDS 30.0%
AATCAAACAAGATGATGACT+TGG + chr8_3:26022339-26022358 None:intergenic 30.0%
TGGACCTAAAGAACTTATAA+AGG - chr8_3:26022471-26022490 Msa1284040:CDS 30.0%
CATTGTATGGATTTATGCTT+AGG - chr8_3:26022775-26022794 Msa1284040:intron 30.0%
!! GTTGTATGTAATAGTTCTAG+TGG - chr8_3:26022818-26022837 Msa1284040:intron 30.0%
TAATTACATGGCACATATCT+AGG - chr8_3:26023003-26023022 Msa1284040:intron 30.0%
! TGATTTTAAACTATCCTGTG+AGG - chr8_3:26023055-26023074 Msa1284040:intron 30.0%
GCTACAAAGTTAATCTCTTA+GGG - chr8_3:26023143-26023162 Msa1284040:intron 30.0%
CTTAGGGTTAATAAAACGTA+TGG - chr8_3:26023159-26023178 Msa1284040:intron 30.0%
!!! TTGTTCACTTTTTGTTTTGG+TGG + chr8_3:26023350-26023369 None:intergenic 30.0%
AACAGAGATAATGTGCTTTA+TGG - chr8_3:26023393-26023412 Msa1284040:intron 30.0%
! GTTTGACTTTAATAACCACA+AGG + chr8_3:26023458-26023477 None:intergenic 30.0%
TAACATAACAACAGATGGTA+AGG - chr8_3:26023847-26023866 Msa1284040:intron 30.0%
AAGATAACTTTCAAGCTGTT+TGG - chr8_3:26023917-26023936 Msa1284040:intron 30.0%
TGATTATGAGAAGAACAATG+AGG - chr8_3:26024027-26024046 Msa1284040:intron 30.0%
AAAGGAACCAAAGATATTGA+TGG - chr8_3:26024088-26024107 Msa1284040:intron 30.0%
AAGATGACCATCAATATCTT+TGG + chr8_3:26024098-26024117 None:intergenic 30.0%
! TACGTCCTTATTTAAACACA+TGG + chr8_3:26024218-26024237 None:intergenic 30.0%
TGTGTTTAAATAAGGACGTA+TGG - chr8_3:26024218-26024237 Msa1284040:CDS 30.0%
GTAAACTTATCACTGAACTT+GGG - chr8_3:26022130-26022149 Msa1284040:three_prime_UTR 30.0%
! TAGTTTGAAGAACTTTTCAC+CGG + chr8_3:26022166-26022185 None:intergenic 30.0%
TAAACATTGGACTTATGTCA+TGG - chr8_3:26022281-26022300 Msa1284040:CDS 30.0%
AAACATTGGACTTATGTCAT+GGG - chr8_3:26022282-26022301 Msa1284040:CDS 30.0%
AATCAAACAAGATGATGACT+TGG + chr8_3:26022339-26022358 None:intergenic 30.0%
TGGACCTAAAGAACTTATAA+AGG - chr8_3:26022471-26022490 Msa1284040:CDS 30.0%
CATTGTATGGATTTATGCTT+AGG - chr8_3:26022775-26022794 Msa1284040:intron 30.0%
!! GTTGTATGTAATAGTTCTAG+TGG - chr8_3:26022818-26022837 Msa1284040:intron 30.0%
TAATTACATGGCACATATCT+AGG - chr8_3:26023003-26023022 Msa1284040:intron 30.0%
! TGATTTTAAACTATCCTGTG+AGG - chr8_3:26023055-26023074 Msa1284040:intron 30.0%
GCTACAAAGTTAATCTCTTA+GGG - chr8_3:26023143-26023162 Msa1284040:intron 30.0%
CTTAGGGTTAATAAAACGTA+TGG - chr8_3:26023159-26023178 Msa1284040:intron 30.0%
!!! TTGTTCACTTTTTGTTTTGG+TGG + chr8_3:26023350-26023369 None:intergenic 30.0%
AACAGAGATAATGTGCTTTA+TGG - chr8_3:26023393-26023412 Msa1284040:intron 30.0%
! GTTTGACTTTAATAACCACA+AGG + chr8_3:26023458-26023477 None:intergenic 30.0%
TAACATAACAACAGATGGTA+AGG - chr8_3:26023847-26023866 Msa1284040:intron 30.0%
AAGATAACTTTCAAGCTGTT+TGG - chr8_3:26023917-26023936 Msa1284040:intron 30.0%
TGATTATGAGAAGAACAATG+AGG - chr8_3:26024027-26024046 Msa1284040:intron 30.0%
AAAGGAACCAAAGATATTGA+TGG - chr8_3:26024088-26024107 Msa1284040:intron 30.0%
AAGATGACCATCAATATCTT+TGG + chr8_3:26024098-26024117 None:intergenic 30.0%
! TACGTCCTTATTTAAACACA+TGG + chr8_3:26024218-26024237 None:intergenic 30.0%
TGTGTTTAAATAAGGACGTA+TGG - chr8_3:26024218-26024237 Msa1284040:CDS 30.0%
GGTAAACTTATCACTGAACT+TGG - chr8_3:26022129-26022148 Msa1284040:three_prime_UTR 35.0%
! AGTTTGAAGAACTTTTCACC+GGG + chr8_3:26022165-26022184 None:intergenic 35.0%
CATCATACTAAGCTTCATGA+AGG - chr8_3:26022231-26022250 Msa1284040:three_prime_UTR 35.0%
!! ACACTGATTCGGTTAAACAT+TGG - chr8_3:26022268-26022287 Msa1284040:exon 35.0%
!! TGCTACTTTAGTGCATTGTA+TGG - chr8_3:26022762-26022781 Msa1284040:intron 35.0%
! AATTCAAGTTCGAGTTCAAC+TGG - chr8_3:26022926-26022945 Msa1284040:intron 35.0%
TGGCACATATCTAGGTAAAA+CGG - chr8_3:26023011-26023030 Msa1284040:intron 35.0%
GATTAACTTTGTAACCTCAC+AGG + chr8_3:26023072-26023091 None:intergenic 35.0%
GGCTACAAAGTTAATCTCTT+AGG - chr8_3:26023142-26023161 Msa1284040:intron 35.0%
TGTGTTCAAATGGAACTTTG+TGG + chr8_3:26023284-26023303 None:intergenic 35.0%
! GCATCGATATCCTTATCATT+AGG - chr8_3:26023549-26023568 Msa1284040:intron 35.0%
ATCCTTAACTAGTGCTCTAA+GGG + chr8_3:26023628-26023647 None:intergenic 35.0%
AATCCTTAACTAGTGCTCTA+AGG + chr8_3:26023629-26023648 None:intergenic 35.0%
ACCATCTGTTGTTATGTTAG+AGG + chr8_3:26023846-26023865 None:intergenic 35.0%
ATAACTTTCAAGCTGTTTGG+TGG - chr8_3:26023920-26023939 Msa1284040:intron 35.0%
!! CATCTTAGAAGTGCTTAACA+AGG - chr8_3:26023973-26023992 Msa1284040:intron 35.0%
! TATTGATGGTCATCTTGTCA+AGG - chr8_3:26024102-26024121 Msa1284040:intron 35.0%
! ATTGATGGTCATCTTGTCAA+GGG - chr8_3:26024103-26024122 Msa1284040:intron 35.0%
GGTAAACTTATCACTGAACT+TGG - chr8_3:26022129-26022148 Msa1284040:three_prime_UTR 35.0%
! AGTTTGAAGAACTTTTCACC+GGG + chr8_3:26022165-26022184 None:intergenic 35.0%
CATCATACTAAGCTTCATGA+AGG - chr8_3:26022231-26022250 Msa1284040:three_prime_UTR 35.0%
!! ACACTGATTCGGTTAAACAT+TGG - chr8_3:26022268-26022287 Msa1284040:exon 35.0%
!! TGCTACTTTAGTGCATTGTA+TGG - chr8_3:26022762-26022781 Msa1284040:intron 35.0%
! AATTCAAGTTCGAGTTCAAC+TGG - chr8_3:26022926-26022945 Msa1284040:intron 35.0%
TGGCACATATCTAGGTAAAA+CGG - chr8_3:26023011-26023030 Msa1284040:intron 35.0%
GATTAACTTTGTAACCTCAC+AGG + chr8_3:26023072-26023091 None:intergenic 35.0%
GGCTACAAAGTTAATCTCTT+AGG - chr8_3:26023142-26023161 Msa1284040:intron 35.0%
TGTGTTCAAATGGAACTTTG+TGG + chr8_3:26023284-26023303 None:intergenic 35.0%
! GCATCGATATCCTTATCATT+AGG - chr8_3:26023549-26023568 Msa1284040:intron 35.0%
ATCCTTAACTAGTGCTCTAA+GGG + chr8_3:26023628-26023647 None:intergenic 35.0%
AATCCTTAACTAGTGCTCTA+AGG + chr8_3:26023629-26023648 None:intergenic 35.0%
ACCATCTGTTGTTATGTTAG+AGG + chr8_3:26023846-26023865 None:intergenic 35.0%
ATAACTTTCAAGCTGTTTGG+TGG - chr8_3:26023920-26023939 Msa1284040:intron 35.0%
!! CATCTTAGAAGTGCTTAACA+AGG - chr8_3:26023973-26023992 Msa1284040:intron 35.0%
! TATTGATGGTCATCTTGTCA+AGG - chr8_3:26024102-26024121 Msa1284040:intron 35.0%
! ATTGATGGTCATCTTGTCAA+GGG - chr8_3:26024103-26024122 Msa1284040:intron 35.0%
TTTCCAAAAATGGTACTCGC+AGG - chr8_3:26022108-26022127 Msa1284040:three_prime_UTR 40.0%
! TTACCTGCGAGTACCATTTT+TGG + chr8_3:26022114-26022133 None:intergenic 40.0%
AGCTTCATGAAGGAGAAGAT+TGG - chr8_3:26022241-26022260 Msa1284040:three_prime_UTR 40.0%
! AGATTGGCATCACACTGATT+CGG - chr8_3:26022257-26022276 Msa1284040:exon 40.0%
CTATACCAAGCAACTCATGT+GGG - chr8_3:26022902-26022921 Msa1284040:intron 40.0%
TATACCAAGCAACTCATGTG+GGG - chr8_3:26022903-26022922 Msa1284040:intron 40.0%
ATGGAACTTTGTGGTCGTAA+TGG + chr8_3:26023275-26023294 None:intergenic 40.0%
!!! TGTTTTGGTGGCAACTGTTT+AGG + chr8_3:26023338-26023357 None:intergenic 40.0%
! TTCCCTTAGAGCACTAGTTA+AGG - chr8_3:26023623-26023642 Msa1284040:intron 40.0%
GCCTCTAACATAACAACAGA+TGG - chr8_3:26023842-26023861 Msa1284040:intron 40.0%
ATGGAAGTTCTGCTGTTAGA+TGG - chr8_3:26023999-26024018 Msa1284040:intron 40.0%
GAGGATGTTGATACTCCAAA+TGG - chr8_3:26024046-26024065 Msa1284040:intron 40.0%
ATGTTGATACTCCAAATGGC+TGG - chr8_3:26024050-26024069 Msa1284040:intron 40.0%
! TATCTTTGGTTCCTTTGCTC+AGG + chr8_3:26024084-26024103 None:intergenic 40.0%
! TTGATGGTCATCTTGTCAAG+GGG - chr8_3:26024104-26024123 Msa1284040:intron 40.0%
TTTCCAAAAATGGTACTCGC+AGG - chr8_3:26022108-26022127 Msa1284040:three_prime_UTR 40.0%
! TTACCTGCGAGTACCATTTT+TGG + chr8_3:26022114-26022133 None:intergenic 40.0%
AGCTTCATGAAGGAGAAGAT+TGG - chr8_3:26022241-26022260 Msa1284040:three_prime_UTR 40.0%
! AGATTGGCATCACACTGATT+CGG - chr8_3:26022257-26022276 Msa1284040:exon 40.0%
CTATACCAAGCAACTCATGT+GGG - chr8_3:26022902-26022921 Msa1284040:intron 40.0%
TATACCAAGCAACTCATGTG+GGG - chr8_3:26022903-26022922 Msa1284040:intron 40.0%
ATGGAACTTTGTGGTCGTAA+TGG + chr8_3:26023275-26023294 None:intergenic 40.0%
!!! TGTTTTGGTGGCAACTGTTT+AGG + chr8_3:26023338-26023357 None:intergenic 40.0%
! TTCCCTTAGAGCACTAGTTA+AGG - chr8_3:26023623-26023642 Msa1284040:intron 40.0%
GCCTCTAACATAACAACAGA+TGG - chr8_3:26023842-26023861 Msa1284040:intron 40.0%
ATGGAAGTTCTGCTGTTAGA+TGG - chr8_3:26023999-26024018 Msa1284040:intron 40.0%
GAGGATGTTGATACTCCAAA+TGG - chr8_3:26024046-26024065 Msa1284040:intron 40.0%
ATGTTGATACTCCAAATGGC+TGG - chr8_3:26024050-26024069 Msa1284040:intron 40.0%
! TATCTTTGGTTCCTTTGCTC+AGG + chr8_3:26024084-26024103 None:intergenic 40.0%
! TTGATGGTCATCTTGTCAAG+GGG - chr8_3:26024104-26024123 Msa1284040:intron 40.0%
GAACTTGGGATCAAAACACC+CGG - chr8_3:26022144-26022163 Msa1284040:three_prime_UTR 45.0%
TTGCTTGGTATAGCAGGTGT+GGG + chr8_3:26022895-26022914 None:intergenic 45.0%
CATGAGTTGCTTGGTATAGC+AGG + chr8_3:26022901-26022920 None:intergenic 45.0%
GCTATACCAAGCAACTCATG+TGG - chr8_3:26022901-26022920 Msa1284040:intron 45.0%
AATTCCCCACATGAGTTGCT+TGG + chr8_3:26022910-26022929 None:intergenic 45.0%
! CAAGTTCGAGTTCAACTGGA+TGG - chr8_3:26022930-26022949 Msa1284040:intron 45.0%
GAGTTCAACTGGATGGTTGA+GGG - chr8_3:26022937-26022956 Msa1284040:intron 45.0%
AGTTCAACTGGATGGTTGAG+GGG - chr8_3:26022938-26022957 Msa1284040:intron 45.0%
AGGTACACACATGCAATGAG+AGG - chr8_3:26023867-26023886 Msa1284040:intron 45.0%
GGTACACACATGCAATGAGA+GGG - chr8_3:26023868-26023887 Msa1284040:intron 45.0%
! GAAGTGCTTAACAAGGCTGA+TGG - chr8_3:26023980-26023999 Msa1284040:intron 45.0%
TGATACTCCAAATGGCTGGA+TGG - chr8_3:26024054-26024073 Msa1284040:intron 45.0%
TGATGGTCATCTTGTCAAGG+GGG - chr8_3:26024105-26024124 Msa1284040:intron 45.0%
TCATCTTGTCAAGGGGGAAA+AGG - chr8_3:26024111-26024130 Msa1284040:CDS 45.0%
AATAAGGACGTCTGGTCCAA+TGG - chr8_3:26024166-26024185 Msa1284040:CDS 45.0%
ATAAGGACGTCTGGTCCAAT+GGG - chr8_3:26024167-26024186 Msa1284040:CDS 45.0%
GAACTTGGGATCAAAACACC+CGG - chr8_3:26022144-26022163 Msa1284040:three_prime_UTR 45.0%
TTGCTTGGTATAGCAGGTGT+GGG + chr8_3:26022895-26022914 None:intergenic 45.0%
CATGAGTTGCTTGGTATAGC+AGG + chr8_3:26022901-26022920 None:intergenic 45.0%
GCTATACCAAGCAACTCATG+TGG - chr8_3:26022901-26022920 Msa1284040:intron 45.0%
AATTCCCCACATGAGTTGCT+TGG + chr8_3:26022910-26022929 None:intergenic 45.0%
! CAAGTTCGAGTTCAACTGGA+TGG - chr8_3:26022930-26022949 Msa1284040:intron 45.0%
GAGTTCAACTGGATGGTTGA+GGG - chr8_3:26022937-26022956 Msa1284040:intron 45.0%
AGTTCAACTGGATGGTTGAG+GGG - chr8_3:26022938-26022957 Msa1284040:intron 45.0%
AGGTACACACATGCAATGAG+AGG - chr8_3:26023867-26023886 Msa1284040:intron 45.0%
GGTACACACATGCAATGAGA+GGG - chr8_3:26023868-26023887 Msa1284040:intron 45.0%
! GAAGTGCTTAACAAGGCTGA+TGG - chr8_3:26023980-26023999 Msa1284040:intron 45.0%
TGATACTCCAAATGGCTGGA+TGG - chr8_3:26024054-26024073 Msa1284040:intron 45.0%
TGATGGTCATCTTGTCAAGG+GGG - chr8_3:26024105-26024124 Msa1284040:intron 45.0%
TCATCTTGTCAAGGGGGAAA+AGG - chr8_3:26024111-26024130 Msa1284040:CDS 45.0%
AATAAGGACGTCTGGTCCAA+TGG - chr8_3:26024166-26024185 Msa1284040:CDS 45.0%
ATAAGGACGTCTGGTCCAAT+GGG - chr8_3:26024167-26024186 Msa1284040:CDS 45.0%
!! TTAAAGTAATATTAAAAATA+AGG + chr8_3:26023790-26023809 None:intergenic 5.0%
!! TTAAAGTAATATTAAAAATA+AGG + chr8_3:26023790-26023809 None:intergenic 5.0%
GTTGCTTGGTATAGCAGGTG+TGG + chr8_3:26022896-26022915 None:intergenic 50.0%
CGAGTTCAACTGGATGGTTG+AGG - chr8_3:26022936-26022955 Msa1284040:intron 50.0%
! GTTGAGGGGTAGTCTTGACT+TGG - chr8_3:26022952-26022971 Msa1284040:intron 50.0%
AGGTAGTCCATCCAGCCATT+TGG + chr8_3:26024064-26024083 None:intergenic 50.0%
!! TGGATGGACTACCTGAGCAA+AGG - chr8_3:26024070-26024089 Msa1284040:intron 50.0%
TAAGGACGTCTGGTCCAATG+GGG - chr8_3:26024168-26024187 Msa1284040:CDS 50.0%
TGCACAAAAGCCAACCCCAT+TGG + chr8_3:26024185-26024204 None:intergenic 50.0%
GTTGCTTGGTATAGCAGGTG+TGG + chr8_3:26022896-26022915 None:intergenic 50.0%
CGAGTTCAACTGGATGGTTG+AGG - chr8_3:26022936-26022955 Msa1284040:intron 50.0%
! GTTGAGGGGTAGTCTTGACT+TGG - chr8_3:26022952-26022971 Msa1284040:intron 50.0%
AGGTAGTCCATCCAGCCATT+TGG + chr8_3:26024064-26024083 None:intergenic 50.0%
!! TGGATGGACTACCTGAGCAA+AGG - chr8_3:26024070-26024089 Msa1284040:intron 50.0%
TAAGGACGTCTGGTCCAATG+GGG - chr8_3:26024168-26024187 Msa1284040:CDS 50.0%
TGCACAAAAGCCAACCCCAT+TGG + chr8_3:26024185-26024204 None:intergenic 50.0%
GACGTCTGGTCCAATGGGGT+TGG - chr8_3:26024172-26024191 Msa1284040:CDS 60.0%
GACGTCTGGTCCAATGGGGT+TGG - chr8_3:26024172-26024191 Msa1284040:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 26022027 26024387 26022027 ID=Msa1284040;Name=Msa1284040
chr8_3 mRNA 26022027 26024387 26022027 ID=Msa1284040-mRNA-1;Parent=Msa1284040;Name=Msa1284040-mRNA-1;_AED=0.27;_eAED=0.27;_QI=90|1|1|1|1|1|2|243|156
chr8_3 exon 26022027 26022553 26022027 ID=Msa1284040-mRNA-1:exon:9086;Parent=Msa1284040-mRNA-1
chr8_3 exon 26024111 26024387 26024111 ID=Msa1284040-mRNA-1:exon:9085;Parent=Msa1284040-mRNA-1
chr8_3 five_prime_UTR 26024298 26024387 26024298 ID=Msa1284040-mRNA-1:five_prime_utr;Parent=Msa1284040-mRNA-1
chr8_3 CDS 26024111 26024297 26024111 ID=Msa1284040-mRNA-1:cds;Parent=Msa1284040-mRNA-1
chr8_3 CDS 26022270 26022553 26022270 ID=Msa1284040-mRNA-1:cds;Parent=Msa1284040-mRNA-1
chr8_3 three_prime_UTR 26022027 26022269 26022027 ID=Msa1284040-mRNA-1:three_prime_utr;Parent=Msa1284040-mRNA-1
Gene Sequence

>Msa1284040

ATGGTACTCGCAGGTAAACTTATCACTGAACTTGGGATCAAAACACCCGGTGAAAAGTTCTTCAAACTATTTGCAACTCAACTTCACGAAGTGCAAAACGTTGTTGAAAGATGTCATCATACTAAGCTTCATGAAGGAGAAGATTGGCATCACACTGATTCGGTTAAACATTGGACTTATGTCATGGATGGTAAGGTACACACATGCAATGAGAGGGTTGAAGAAGTTGATGAGCAAAACAAAAAGATAACTTTCAAGCTGTTTGGTGGAGATATTGAAAACTATAAGGTCTTTAAGCTCATCTTAGAAGTGCTTAACAAGGCTGATGGAAGTTCTGCTGTTAGATGGACTATTGATTATGAGAAGAACAATGAGGATGTTGATACTCCAAATGGCTGGATGGACTACCTGAGCAAAGGAACCAAAGATATTGATGGTCATCTTGTCAAGGGGGAAAAGGTAGCTCTATAA
Protein sequence

>Msa1284040

MVLAGKLITELGIKTPGEKFFKLFATQLHEVQNVVERCHHTKLHEGEDWHHTDSVKHWTYVMDGKVHTCNERVEEVDEQNKKITFKLFGGDIENYKVFKLILEVLNKADGSSAVRWTIDYEKNNEDVDTPNGWMDYLSKGTKDIDGHLVKGEKVAL*