AlfalfaGEDB | Msa1040340

M. sativa cultivar zhongmu-4 / Msa1040340

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040340	ABD32861.1	86.047	172	13	4	1	163	1	170	1.07e-78	241

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040340	Q2HUY8	86.047	172	13	4	1	163	1	170	5.11e-79	241

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0045550	Msa1040340	0.803453	3.461446e-49	-8.615850e-47
Msa0193540	Msa1040340	0.824030	1.006389e-53	-8.615850e-47
Msa0226180	Msa1040340	0.804404	2.195217e-49	-8.615850e-47
Msa0235470	Msa1040340	0.816999	4.138631e-52	-8.615850e-47
Msa0274630	Msa1040340	0.809238	2.088292e-50	-8.615850e-47
Msa0296980	Msa1040340	-0.816784	4.626955e-52	-8.615850e-47
Msa0314060	Msa1040340	0.816874	4.415151e-52	-8.615850e-47
Msa0422180	Msa1040340	0.826294	2.936007e-54	-8.615850e-47
Msa0481280	Msa1040340	0.801058	1.076849e-48	-8.615850e-47
Msa0571780	Msa1040340	0.804098	2.542940e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040340	MtrunA17_Chr7g0271201	86.408	103	10	3	1	101	1	101	8.05e-37	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 26 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTCAGTAGCAGAGGTA+AGG	0.573413	7_1:-77695175	Msa1040340:CDS
AACCGTACAAAATTTGATTT+TGG	0.148787	7_1:-77695324	Msa1040340:CDS
AACTTTACGAATTTGATTCT+TGG	0.278934	7_1:+77695269	None:intergenic
AAGACGAAGAAGATGCAACT+CGG	0.617969	7_1:-77695365	Msa1040340:CDS
AATAGTACTACTGCTCGAAA+TGG	0.417979	7_1:-77695126	Msa1040340:CDS
AATATGTGGATTGCATTCTT+TGG	0.251961	7_1:+77694990	None:intergenic
AATCGAAACGGTTACCAAAG+AGG	0.604417	7_1:-77695411	Msa1040340:CDS
AATGTAAATGTCAGTAGCAG+AGG	0.601557	7_1:-77695180	Msa1040340:CDS
AATGTATTGGAAAACCCTAA+TGG	0.409235	7_1:-77695072	Msa1040340:CDS
ACTACTGCTCGAAATGGATT+TGG	0.361001	7_1:-77695120	Msa1040340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTATTGGAAAACCCTAA+TGG	-	chr7_1:77695341-77695360	Msa1040340:CDS	30.0%
ATGTATTGGAAAACCCTAAT+GGG	-	chr7_1:77695342-77695361	Msa1040340:CDS	30.0%
CAATCCACATATTGAATCAT+TGG	-	chr7_1:77695433-77695452	Msa1040340:CDS	30.0%
TCAACCAATGATTCAATATG+TGG	+	chr7_1:77695440-77695459	None:intergenic	30.0%
AATGTAAATGTCAGTAGCAG+AGG	-	chr7_1:77695233-77695252	Msa1040340:CDS	35.0%
AATAGTACTACTGCTCGAAA+TGG	-	chr7_1:77695287-77695306	Msa1040340:CDS	35.0%
GAAGAGATCTCCAATCGAAA+CGG	-	chr7_1:77694990-77695009	Msa1040340:CDS	40.0%
AATCGAAACGGTTACCAAAG+AGG	-	chr7_1:77695002-77695021	Msa1040340:CDS	40.0%
AAGACGAAGAAGATGCAACT+CGG	-	chr7_1:77695048-77695067	Msa1040340:CDS	40.0%
AAATGTCAGTAGCAGAGGTA+AGG	-	chr7_1:77695238-77695257	Msa1040340:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	77694972	77695463	77694972	ID=Msa1040340;Name=Msa1040340
chr7_1	mRNA	77694972	77695463	77694972	ID=Msa1040340-mRNA-1;Parent=Msa1040340;Name=Msa1040340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|163
chr7_1	exon	77694972	77695463	77694972	ID=Msa1040340-mRNA-1:exon:20568;Parent=Msa1040340-mRNA-1
chr7_1	CDS	77694972	77695463	77694972	ID=Msa1040340-mRNA-1:cds;Parent=Msa1040340-mRNA-1

Gene Sequence

>Msa1040340

ATGTCTGCTTCTTCTGATGAAGAGATCTCCAATCGAAACGGTTACCAAAGAGGAGGTAGTGACGGTGATGACGAACAAGACGAAGAAGATGCAACTCGGAAGAAGAAGAAAAAGAAGAACCGTACAAAATTTGATTTTGGAAAAAGGTTGCTACTTAATCAATTTTCAAAAGCCAAGAATCAAATTCGTAAAGTTAGAAGCAAAAAGCATCTTCTTTCATCCTCGTCATCATCAACAACAGCAACACCGTCTTTTTCTAGGAATGTAAATGTCAGTAGCAGAGGTAAGGTGGTGATTATTCAAGGTGAGGGTAATAATAGTACTACTGCTCGAAATGGATTTGGTTGCAAGTTTTGTTTTTCGCGTCCCAATGTATTGGAAAACCCTAATGGGTCACCTAGTAGTGACCCTAATGATCCTAAATTTTTATTAGAGAAGAATGATTTTTGTTCCAAAGAATGCAATCCACATATTGAATCATTGGTTGAATGA

Protein sequence

>Msa1040340

MSASSDEEISNRNGYQRGGSDGDDEQDEEDATRKKKKKKNRTKFDFGKRLLLNQFSKAKNQIRKVRSKKHLLSSSSSSTTATPSFSRNVNVSSRGKVVIIQGEGNNSTTARNGFGCKFCFSRPNVLENPNGSPSSDPNDPKFLLEKNDFCSKECNPHIESLVE*