AlfalfaGEDB | Msa0422180

M. sativa cultivar zhongmu-4 / Msa0422180

KEGG: K11584
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005829 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0010565 GO:0010646 GO:0010648 GO:0019216 GO:0019217 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0031998 GO:0032000 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050994 GO:0050996 GO:0062012 GO:0062013 GO:0065007 GO:0070013 GO:0080090 GO:1900457 GO:1900458
PFAM: PF01603.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0422180	XP_003601840.1	99.424	521	3	0	1	521	1	521	0.0	1071

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0422180	sp\|Q9LU89\|2A5N_ARATH	72.157	510	136	3	1	504	1	510	0.0	736

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0422180	G7J2I4	99.424	521	3	0	1	521	1	521	0.0	1071

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0422180	0.820813	5.624209e-53	-8.615850e-47
Msa0002710	Msa0422180	0.801302	9.601333e-49	-8.615850e-47
Msa0003630	Msa0422180	0.820260	7.534327e-53	-8.615850e-47
Msa0005270	Msa0422180	0.807838	4.157268e-50	-8.615850e-47
Msa0006110	Msa0422180	0.827743	1.321865e-54	-8.615850e-47
Msa0007990	Msa0422180	0.841775	3.873314e-58	-8.615850e-47
Msa0008220	Msa0422180	0.829058	6.366262e-55	-8.615850e-47
Msa0010490	Msa0422180	0.808546	2.936363e-50	-8.615850e-47
Msa0010770	Msa0422180	0.840638	7.706131e-58	-8.615850e-47
Msa0012710	Msa0422180	0.838069	3.578799e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0422180	MtrunA17_Chr3g0123051	99.424	521	3	0	1	521	1	521	0.0	1071
Msa0422180	MtrunA17_Chr6g0458891	68.138	521	155	4	1	520	1	511	0.0	728
Msa0422180	MtrunA17_Chr3g0119261	64.015	528	171	5	1	513	1	524	0.0	659
Msa0422180	MtrunA17_Chr7g0264871	65.166	422	147	0	83	504	42	463	0.0	577
Msa0422180	MtrunA17_Chr1g0180401	59.322	472	185	3	37	506	16	482	0.0	569
Msa0422180	MtrunA17_Chr1g0210311	55.301	481	202	3	44	512	9	488	0.0	560
Msa0422180	MtrunA17_Chr1g0148671	52.918	514	216	4	1	512	1	490	0.0	548
Msa0422180	MtrunA17_Chr3g0138441	51.692	532	202	4	1	512	1	497	0.0	542
Msa0422180	MtrunA17_Chr4g0062821	50.895	503	225	4	1	500	1	484	0.0	519
Msa0422180	MtrunA17_Chr1g0211361	41.337	404	235	1	103	506	39	440	2.22e-117	353

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0422180	AT3G26020.2	72.157	510	136	3	1	504	1	510	736
Msa0422180	AT3G26020.5	72.157	510	136	3	1	504	1	510	736
Msa0422180	AT3G26020.1	72.157	510	136	3	1	504	1	510	736
Msa0422180	AT3G26020.6	72.157	510	136	3	1	504	1	510	736
Msa0422180	AT1G13460.2	74.304	467	112	3	40	506	33	491	724
Msa0422180	AT1G13460.1	74.304	467	112	3	40	506	33	491	724
Msa0422180	AT4G15415.1	65.497	513	171	4	1	513	1	507	685
Msa0422180	AT4G15415.4	65.497	513	171	4	1	513	1	507	685
Msa0422180	AT4G15415.2	65.497	513	171	4	1	513	1	507	685
Msa0422180	AT4G15415.5	65.497	513	171	4	1	513	1	507	685

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Find 114 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCACTAGTTAGGCTT+TGG	0.448186	3_2:-71317283	None:intergenic
AAAATTTAATACCTGAAAAT+GGG	0.353230	3_2:-71313612	None:intergenic
AAACTTTGATTCACCGAATT+GGG	0.352067	3_2:+71312193	Msa0422180:five_prime_UTR
AAATAGCCTTCAATTCCTAT+AGG	0.465971	3_2:-71317221	None:intergenic
AAATTTAATACCTGAAAATG+GGG	0.572594	3_2:-71313611	None:intergenic
AACTTGCTGATACAATCATA+AGG	0.482131	3_2:+71313438	Msa0422180:CDS
AAGCACTTTGGTTTGTGCAA+CGG	0.534767	3_2:-71313356	None:intergenic
AAGGAAGGTGAAGTGACAGC+AGG	0.527915	3_2:+71316968	Msa0422180:CDS
AATGCAAGAGGTTGTTAAGA+TGG	0.587807	3_2:+71312866	Msa0422180:CDS
AATTTAATACCTGAAAATGG+GGG	0.674910	3_2:-71313610	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTTGATTCACCGAATT+GGG	+	chr3_2:71312193-71312212	Msa0422180:five_prime_UTR	30.0%
TATGGTGAAAATTAGAGAAG+TGG	+	chr3_2:71312244-71312263	Msa0422180:five_prime_UTR	30.0%
ATGGTGAAAATTAGAGAAGT+GGG	+	chr3_2:71312245-71312264	Msa0422180:five_prime_UTR	30.0%
CCTTACCTAGATAAGAAAAA+GGG	+	chr3_2:71312276-71312295	Msa0422180:five_prime_UTR	30.0%
CAGAATCATCATCTTCATAT+CGG	+	chr3_2:71312315-71312334	Msa0422180:five_prime_UTR	30.0%
AGAATCATCATCTTCATATC+GGG	+	chr3_2:71312316-71312335	Msa0422180:five_prime_UTR	30.0%
ATTCCTAAAAAGTCCTCAAA+AGG	+	chr3_2:71312438-71312457	Msa0422180:CDS	30.0%
TCTAATTCTTCTTTGAATGC+AGG	+	chr3_2:71312567-71312586	Msa0422180:CDS	30.0%
TTTCCTTAAGATGCTTAGTA+GGG	-	chr3_2:71312770-71312789	None:intergenic	30.0%
TACTAAGCATCTTAAGGAAA+AGG	+	chr3_2:71312770-71312789	Msa0422180:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	71312020	71317364	71312020	ID=Msa0422180;Name=Msa0422180
chr3_2	mRNA	71312020	71317364	71312020	ID=Msa0422180-mRNA-1;Parent=Msa0422180;Name=Msa0422180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=394\|1\|1\|1\|1\|1\|2\|268\|521
chr3_2	exon	71312020	71313622	71312020	ID=Msa0422180-mRNA-1:exon:17376;Parent=Msa0422180-mRNA-1
chr3_2	exon	71316740	71317364	71316740	ID=Msa0422180-mRNA-1:exon:17377;Parent=Msa0422180-mRNA-1
chr3_2	five_prime_UTR	71312020	71312413	71312020	ID=Msa0422180-mRNA-1:five_prime_utr;Parent=Msa0422180-mRNA-1
chr3_2	CDS	71312414	71313622	71312414	ID=Msa0422180-mRNA-1:cds;Parent=Msa0422180-mRNA-1
chr3_2	CDS	71316740	71317096	71316740	ID=Msa0422180-mRNA-1:cds;Parent=Msa0422180-mRNA-1
chr3_2	three_prime_UTR	71317097	71317364	71317097	ID=Msa0422180-mRNA-1:three_prime_utr;Parent=Msa0422180-mRNA-1

Gene Sequence

>Msa0422180

ATGTTCAAAAAGGTATTTGGTAAAATTCCTAAAAAGTCCTCAAAAGGTTCTGAGAATCGTGAACAAGGTGGAAATTCAAGAAGCCATGGTGTTGCAACCTCAAAAAACAGTGATGTTGCTACACAACCTGGGAGTAGCAAAACTGGTAATTCTTCTAATTCTTCTTTGAATGCAGGACAAGGACAGTTTCATAGTCATGGTAACAAATCTTCATTACCTATGAATGAGAATTCCAATGGTAATTTTAATTCTTATGAAGCTTTACCAGCATTTAGGGATGTTCCGAATTCCGAAAAACCGAGCTTGTTTATAAAAAAGCTTAAGATGTGTAGTGTTGTTTTTGACTTCACTGACCCTACTAAGCATCTTAAGGAAAAGGAGATTAAGAGACAAGCTTTGGTTGAGCTTGTTGATTATGTGTCTTCTGTTAATGCTAAATTTACTGAGAATGTAATGCAAGAGGTTGTTAAGATGGTGTCTGTAAATATATTCAGAACACTAAGTCCTCAACCGCGTGAGAATAAGCTCATTGATGGCGTTGAATTAGAGGAGGAGGAGCCTTCGATGGATCCTTCGTGGCCTCATTTGCAAATTGTTTATGAGCTTTTTCTTAGATTTGTTGCATCACCTGAGCTGGATGCAAAGTTGGCTAAGAGATTCATTGATCAATCGTTTATTTTGAGGCTGCTTGATTTGTTTGACTCCGAAGATCCTAGAGAAAGAGAGTATTTGAAAATGTCTTTGCATCGGATCTATGGCAAGTTAATGGCGCATCGACCTTTCATCAGGAAATCAATCAATAACATCTTTTTGAACTTTGTTTTTGAGACTGAGAAGCATAATGGAATTGCTGAGTTTTTGGAAATTCTGGGGAGTATCATTAATGGTTTTGCATTGCCATTGAAAGAAGAGCATAAATTGTTTCTGGTTCGAATATTGATTCCGTTGCACAAACCAAAGTGCTTAGCAATGTATCATCAGCAGTTATCTTATTGCATTACTCAGTTTGTGGAGAAAGACTGCAAACTTGCTGATACAATCATAAGGGGGTTATTGAAGTACTGGCCGATAACAAATAGTTCAAAGGAAGTTATGTTCCTAGGTGAGTTGGAGGAAGTCTTGGAAGCAACTCAACCTCCAGAATTCCAGCGATGTATGGTGCTATTGTTTCGCCGTGTTTCTCATTGTTTGAATAGCCCCCATTTTCAGGTGGCGGAAAGAGCTTTGTTCTTGTGGAATAACGACCACATCGTGAACTTAATCAAACAAAACTGCAAAGTGATACTTCCCATCATCTTTCCCGCGTTGGAGAGAAATACAAAAACTCATTGGAATCAAGCTGTCCATAGTTTGACTTTAAATGTTCAGAAGATTTTTCACGATCTCGATCTCGATCTGTACAAAGAATGTTTACAAAAGTTTGAGCAAGACGAATCAAAGGAAGGTGAAGTGACAGCAGGGCGCGAAGCCACATGGAAACGCTTGGAGGAGGTTGCCGCAAAGAAAGCTGCAAGTAACGAAGCTGTGCTTATTAGTAAAGCACTACCTCGCAAATCTGCAGGTTAG

Protein sequence

>Msa0422180

MFKKVFGKIPKKSSKGSENREQGGNSRSHGVATSKNSDVATQPGSSKTGNSSNSSLNAGQGQFHSHGNKSSLPMNENSNGNFNSYEALPAFRDVPNSEKPSLFIKKLKMCSVVFDFTDPTKHLKEKEIKRQALVELVDYVSSVNAKFTENVMQEVVKMVSVNIFRTLSPQPRENKLIDGVELEEEEPSMDPSWPHLQIVYELFLRFVASPELDAKLAKRFIDQSFILRLLDLFDSEDPREREYLKMSLHRIYGKLMAHRPFIRKSINNIFLNFVFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQRCMVLLFRRVSHCLNSPHFQVAERALFLWNNDHIVNLIKQNCKVILPIIFPALERNTKTHWNQAVHSLTLNVQKIFHDLDLDLYKECLQKFEQDESKEGEVTAGREATWKRLEEVAAKKAASNEAVLISKALPRKSAG*