AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0422180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422180 MtrunA17_Chr3g0123051 99.424 521 3 0 1 521 1 521 0.0 1071
Msa0422180 MtrunA17_Chr6g0458891 68.138 521 155 4 1 520 1 511 0.0 728
Msa0422180 MtrunA17_Chr3g0119261 64.015 528 171 5 1 513 1 524 0.0 659
Msa0422180 MtrunA17_Chr7g0264871 65.166 422 147 0 83 504 42 463 0.0 577
Msa0422180 MtrunA17_Chr1g0180401 59.322 472 185 3 37 506 16 482 0.0 569
Msa0422180 MtrunA17_Chr1g0210311 55.301 481 202 3 44 512 9 488 0.0 560
Msa0422180 MtrunA17_Chr1g0148671 52.918 514 216 4 1 512 1 490 0.0 548
Msa0422180 MtrunA17_Chr3g0138441 51.692 532 202 4 1 512 1 497 0.0 542
Msa0422180 MtrunA17_Chr4g0062821 50.895 503 225 4 1 500 1 484 0.0 519
Msa0422180 MtrunA17_Chr1g0211361 41.337 404 235 1 103 506 39 440 2.22e-117 353
Msa0422180 MtrunA17_Chr7g0273431 86.441 59 8 0 22 80 58 116 8.06e-26 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422180 AT3G26020.2 72.157 510 136 3 1 504 1 510 0.0 736
Msa0422180 AT3G26020.5 72.157 510 136 3 1 504 1 510 0.0 736
Msa0422180 AT3G26020.1 72.157 510 136 3 1 504 1 510 0.0 736
Msa0422180 AT3G26020.6 72.157 510 136 3 1 504 1 510 0.0 736
Msa0422180 AT1G13460.2 74.304 467 112 3 40 506 33 491 0.0 724
Msa0422180 AT1G13460.1 74.304 467 112 3 40 506 33 491 0.0 724
Msa0422180 AT4G15415.1 65.497 513 171 4 1 513 1 507 0.0 685
Msa0422180 AT4G15415.4 65.497 513 171 4 1 513 1 507 0.0 685
Msa0422180 AT4G15415.2 65.497 513 171 4 1 513 1 507 0.0 685
Msa0422180 AT4G15415.5 65.497 513 171 4 1 513 1 507 0.0 685
Msa0422180 AT3G21650.1 61.959 531 182 4 1 513 1 529 0.0 662
Msa0422180 AT3G21650.2 61.959 531 182 4 1 513 1 529 0.0 662
Msa0422180 AT3G26020.4 61.290 558 133 5 1 504 1 529 0.0 640
Msa0422180 AT3G26020.7 62.107 541 139 7 1 504 1 512 0.0 622
Msa0422180 AT3G26020.8 62.107 541 139 7 1 504 1 512 0.0 622
Msa0422180 AT3G26020.3 62.107 541 139 7 1 504 1 512 0.0 622
Msa0422180 AT3G26030.1 56.832 505 187 5 1 503 1 476 0.0 592
Msa0422180 AT3G09880.1 60.127 474 181 2 40 506 18 490 0.0 584
Msa0422180 AT5G03470.1 56.461 503 201 4 1 502 1 486 0.0 564
Msa0422180 AT5G25510.1 51.631 521 227 5 1 520 1 497 0.0 532
Msa0422180 AT4G15415.3 64.851 404 136 4 1 404 1 398 0.0 528
Msa0422180 AT3G54930.2 55.794 466 194 2 40 503 41 496 0.0 521
Msa0422180 AT3G54930.1 55.794 466 194 2 40 503 41 496 0.0 521
Msa0422180 AT3G54930.3 55.041 367 153 2 40 404 41 397 4.74e-136 400

Find 114 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATTTAATACCTGAAAA+TGG 0.154967 3_2:-71313613 None:intergenic
AGAAGAGCATAAATTGTTTC+TGG 0.170362 3_2:+71313319 Msa0422180:CDS
ATGAAGCTTTACCAGCATTT+AGG 0.170397 3_2:+71312667 Msa0422180:CDS
ATTCAAGAAATTGCCTTTCT+TGG 0.200582 3_2:-71317182 None:intergenic
GCTTAATCTTCTTTGTTGTT+TGG 0.228935 3_2:-71312071 None:intergenic
CTTAATCTTCTTTGTTGTTT+GGG 0.233357 3_2:-71312070 None:intergenic
CCCTTACCTAGATAAGAAAA+AGG 0.235090 3_2:+71312275 Msa0422180:five_prime_UTR
TGAAGCTTTACCAGCATTTA+GGG 0.264284 3_2:+71312668 Msa0422180:CDS
TCCTTTGAACTATTTGTTAT+CGG 0.271122 3_2:-71313479 None:intergenic
CAAACTTTGATTCACCGAAT+TGG 0.282750 3_2:+71312192 Msa0422180:five_prime_UTR
AGTTCAATTCAAAATCATTA+TGG 0.295945 3_2:+71312226 Msa0422180:five_prime_UTR
TTGATGAACTATGTTCAAAA+AGG 0.297427 3_2:+71312404 Msa0422180:exon
ATGTCTTTGCATCGGATCTA+TGG 0.305697 3_2:+71313149 Msa0422180:CDS
TCGGATCTATGGCAAGTTAA+TGG 0.326598 3_2:+71313160 Msa0422180:CDS
GAACATTTAAAGTCAAACTA+TGG 0.333782 3_2:-71316874 None:intergenic
ATTCTGGGGAGTATCATTAA+TGG 0.341716 3_2:+71313278 Msa0422180:CDS
CATTGATGGCGTTGAATTAG+AGG 0.343144 3_2:+71312941 Msa0422180:CDS
CTTTGACATTCACTTCCTAT+AGG 0.349671 3_2:+71317206 Msa0422180:three_prime_UTR
CAGAATCATCATCTTCATAT+CGG 0.351588 3_2:+71312315 Msa0422180:five_prime_UTR
AAACTTTGATTCACCGAATT+GGG 0.352067 3_2:+71312193 Msa0422180:five_prime_UTR
AAAATTTAATACCTGAAAAT+GGG 0.353230 3_2:-71313612 None:intergenic
CCATTGGAATTCTCATTCAT+AGG 0.353655 3_2:-71312630 None:intergenic
ACCATACATCGCTGGAATTC+TGG 0.359106 3_2:-71313551 None:intergenic
CTCTCTTTCTCTAGGATCTT+CGG 0.365168 3_2:-71313117 None:intergenic
AATTTATGCTCTTCTTTCAA+TGG 0.371325 3_2:-71313311 None:intergenic
CAACCTGGGAGTAGCAAAAC+TGG 0.401143 3_2:+71312537 Msa0422180:CDS
CGATATGAAGATGATGATTC+TGG 0.402321 3_2:-71312314 None:intergenic
CGTGAGAATAAGCTCATTGA+TGG 0.406564 3_2:+71312927 Msa0422180:CDS
TTATTGCATTACTCAGTTTG+TGG 0.408341 3_2:+71313403 Msa0422180:CDS
GGAGATTAAGAGACAAGCTT+TGG 0.411887 3_2:+71312791 Msa0422180:CDS
CGGAAAGAGCTTTGTTCTTG+TGG 0.412229 3_2:+71316744 Msa0422180:CDS
ATAAGCAAAATGCACTAGTT+AGG 0.419004 3_2:-71317289 None:intergenic
TGGGTTGAAAAGAGAGAGAA+AGG 0.424031 3_2:-71312051 None:intergenic
TTTGAGACTGAGAAGCATAA+TGG 0.425058 3_2:+71313236 Msa0422180:CDS
GTTACTTGCAGCTTTCTTTG+CGG 0.431372 3_2:-71317026 None:intergenic
ACTTTGAAGCATACCCAATT+CGG 0.436604 3_2:-71312206 None:intergenic
ATCTGCAGGTTAGATAGAAA+TGG 0.436689 3_2:+71317084 Msa0422180:exon
AGCTTATTCTCACGCGGTTG+AGG 0.441683 3_2:-71312918 None:intergenic
TGACCCTACTAAGCATCTTA+AGG 0.444211 3_2:+71312764 Msa0422180:CDS
TCTAATTCTTCTTTGAATGC+AGG 0.444424 3_2:+71312567 Msa0422180:CDS
GCCAACTTTGCATCCAGCTC+AGG 0.444703 3_2:-71313041 None:intergenic
TCCCATCATCTTTCCCGCGT+TGG 0.446029 3_2:+71316817 Msa0422180:CDS
ACTTGCTGATACAATCATAA+GGG 0.446448 3_2:+71313439 Msa0422180:CDS
TGGCGCATCGACCTTTCATC+AGG 0.446680 3_2:+71313180 Msa0422180:CDS
AAAATGCACTAGTTAGGCTT+TGG 0.448186 3_2:-71317283 None:intergenic
CTCCAACGCGGGAAAGATGA+TGG 0.449918 3_2:-71316819 None:intergenic
TTCAAATACTCTCTTTCTCT+AGG 0.456945 3_2:-71313125 None:intergenic
ATAAGAATTAAAATTACCAT+TGG 0.460065 3_2:-71312646 None:intergenic
ACCTGAGCTGGATGCAAAGT+TGG 0.460914 3_2:+71313040 Msa0422180:CDS
TCCAGAATTCCAGCGATGTA+TGG 0.464531 3_2:+71313550 Msa0422180:CDS
AAATAGCCTTCAATTCCTAT+AGG 0.465971 3_2:-71317221 None:intergenic
TACTAAGCATCTTAAGGAAA+AGG 0.466933 3_2:+71312770 Msa0422180:CDS
TCACTTCCTATAGGAATTGA+AGG 0.467315 3_2:+71317215 Msa0422180:three_prime_UTR
AGTGATGTTGCTACACAACC+TGG 0.472891 3_2:+71312522 Msa0422180:CDS
TCAAAGGAAGTTATGTTCCT+AGG 0.480411 3_2:+71313494 Msa0422180:CDS
AACTTGCTGATACAATCATA+AGG 0.482131 3_2:+71313438 Msa0422180:CDS
AGAATCATCATCTTCATATC+GGG 0.486218 3_2:+71312316 Msa0422180:five_prime_UTR
TGTGATGGGTTGGCCAAGAA+AGG 0.487462 3_2:+71317169 Msa0422180:three_prime_UTR
CAGAACAAACACAAAGAAGA+AGG 0.490537 3_2:-71312380 None:intergenic
ATTTGTTGCATCACCTGAGC+TGG 0.492210 3_2:+71313028 Msa0422180:CDS
ATGGTGAAAATTAGAGAAGT+GGG 0.492325 3_2:+71312245 Msa0422180:five_prime_UTR
TTGATTGATTTCCTGATGAA+AGG 0.494201 3_2:-71313191 None:intergenic
CGAAGCCACATGGAAACGCT+TGG 0.500307 3_2:+71316994 Msa0422180:CDS
CAGCAGGGCGCGAAGCCACA+TGG 0.503391 3_2:+71316984 Msa0422180:CDS
TGATACATTGCTAAGCACTT+TGG 0.506415 3_2:-71313368 None:intergenic
TTTCCTTAAGATGCTTAGTA+GGG 0.507948 3_2:-71312767 None:intergenic
GCACTACCTCGCAAATCTGC+AGG 0.509546 3_2:+71317070 Msa0422180:CDS
ATTTGAAAATGTCTTTGCAT+CGG 0.516512 3_2:+71313141 Msa0422180:CDS
AGTTATGTTCCTAGGTGAGT+TGG 0.516615 3_2:+71313502 Msa0422180:CDS
TCATAAACAATTTGCAAATG+AGG 0.517103 3_2:-71312993 None:intergenic
AGGTGAGTTGGAGGAAGTCT+TGG 0.518621 3_2:+71313514 Msa0422180:CDS
TATGGTGAAAATTAGAGAAG+TGG 0.520205 3_2:+71312244 Msa0422180:five_prime_UTR
GGCTATTTATTATTAAGTAG+TGG 0.520358 3_2:+71317236 Msa0422180:three_prime_UTR
AAGGAAGGTGAAGTGACAGC+AGG 0.527915 3_2:+71316968 Msa0422180:CDS
GAGATCAGAAACAGTGGTGG+TGG 0.531625 3_2:-71312147 None:intergenic
TATGTTCCTAGGTGAGTTGG+AGG 0.533910 3_2:+71313505 Msa0422180:CDS
AAGCACTTTGGTTTGTGCAA+CGG 0.534767 3_2:-71313356 None:intergenic
TTCGGAACATCCCTAAATGC+TGG 0.537273 3_2:-71312678 None:intergenic
TACTGAGAATGTAATGCAAG+AGG 0.549162 3_2:+71312854 Msa0422180:CDS
TGGCGTTGAATTAGAGGAGG+AGG 0.556878 3_2:+71312947 Msa0422180:CDS
GCCGATAACAAATAGTTCAA+AGG 0.558222 3_2:+71313478 Msa0422180:CDS
CAAGGACAGTTTCATAGTCA+TGG 0.562679 3_2:+71312591 Msa0422180:CDS
CACATGGAAACGCTTGGAGG+AGG 0.564031 3_2:+71317000 Msa0422180:CDS
AGCCTTCGATGGATCCTTCG+TGG 0.564901 3_2:+71312970 Msa0422180:CDS
TTTGTATTTCTCTCCAACGC+GGG 0.566060 3_2:-71316830 None:intergenic
AAATTTAATACCTGAAAATG+GGG 0.572594 3_2:-71313611 None:intergenic
GTTTGAGCAAGACGAATCAA+AGG 0.576642 3_2:+71316949 Msa0422180:CDS
TCTTCTTTGAATGCAGGACA+AGG 0.584808 3_2:+71312573 Msa0422180:CDS
GGTTCTGAGAATCGTGAACA+AGG 0.586207 3_2:+71312459 Msa0422180:CDS
AATGCAAGAGGTTGTTAAGA+TGG 0.587807 3_2:+71312866 Msa0422180:CDS
AGAGGAGGAGGAGCCTTCGA+TGG 0.596230 3_2:+71312959 Msa0422180:CDS
ACAATAGCACCATACATCGC+TGG 0.596620 3_2:-71313559 None:intergenic
TCCAACGCGGGAAAGATGAT+GGG 0.597175 3_2:-71316818 None:intergenic
CTTGCTGATACAATCATAAG+GGG 0.598460 3_2:+71313440 Msa0422180:CDS
GGTGGAAATTCAAGAAGCCA+TGG 0.599824 3_2:+71312480 Msa0422180:CDS
CCTATGAATGAGAATTCCAA+TGG 0.604698 3_2:+71312630 Msa0422180:CDS
GTTTGATTAAGTTCACGATG+TGG 0.613263 3_2:-71316775 None:intergenic
ATCTAACCTGCAGATTTGCG+AGG 0.619938 3_2:-71317076 None:intergenic
AGCCACATGGAAACGCTTGG+AGG 0.620869 3_2:+71316997 Msa0422180:CDS
CTCCTCCAAGCGTTTCCATG+TGG 0.625054 3_2:-71316999 None:intergenic
AGACTTCCTCCAACTCACCT+AGG 0.632209 3_2:-71313511 None:intergenic
AGGAAGGTGAAGTGACAGCA+GGG 0.635472 3_2:+71316969 Msa0422180:CDS
GAGCAAGACGAATCAAAGGA+AGG 0.642249 3_2:+71316953 Msa0422180:CDS
TGATGGCGTTGAATTAGAGG+AGG 0.644796 3_2:+71312944 Msa0422180:CDS
ATTTGCAAATGAGGCCACGA+AGG 0.651420 3_2:-71312984 None:intergenic
GGCCACGAAGGATCCATCGA+AGG 0.651471 3_2:-71312972 None:intergenic
TTTGAGATCAGAAACAGTGG+TGG 0.652847 3_2:-71312150 None:intergenic
GTGATGTTGCTACACAACCT+GGG 0.664966 3_2:+71312523 Msa0422180:CDS
AATTTAATACCTGAAAATGG+GGG 0.674910 3_2:-71313610 None:intergenic
ATACATCGCTGGAATTCTGG+AGG 0.675794 3_2:-71313548 None:intergenic
TATTCAAACAATGAGAAACA+CGG 0.684922 3_2:-71313586 None:intergenic
TCTGAGAATCGTGAACAAGG+TGG 0.686992 3_2:+71312462 Msa0422180:CDS
TCAATGAGCTTATTCTCACG+CGG 0.708503 3_2:-71312924 None:intergenic
TTGCTGATACAATCATAAGG+GGG 0.715338 3_2:+71313441 Msa0422180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGAATTAAAATTACCAT+TGG - chr3_2:71312649-71312668 None:intergenic 15.0%
!! AAAATTTAATACCTGAAAAT+GGG - chr3_2:71313615-71313634 None:intergenic 15.0%
!!! AAATTATATAAAGCGTTTTA+TGG + chr3_2:71315414-71315433 Msa0422180:intron 15.0%
!! AGTTCAATTCAAAATCATTA+TGG + chr3_2:71312226-71312245 Msa0422180:five_prime_UTR 20.0%
!!! TGTTTTCTAGATTTGAAAAA+AGG + chr3_2:71312345-71312364 Msa0422180:five_prime_UTR 20.0%
!!! GTTTTCTAGATTTGAAAAAA+GGG + chr3_2:71312346-71312365 Msa0422180:five_prime_UTR 20.0%
!! AAATTTAATACCTGAAAATG+GGG - chr3_2:71313614-71313633 None:intergenic 20.0%
!! GAAAATTTAATACCTGAAAA+TGG - chr3_2:71313616-71313635 None:intergenic 20.0%
!! AAAAACATCATCTTAAAGTT+AGG + chr3_2:71313684-71313703 Msa0422180:intron 20.0%
!! CATATATGCATAACTAATTA+AGG + chr3_2:71313962-71313981 Msa0422180:intron 20.0%
!! TTAGCTAATTTAAAAGCTTA+TGG + chr3_2:71314228-71314247 Msa0422180:intron 20.0%
!! AAGAATAATCCAAAAGTTAA+AGG - chr3_2:71314344-71314363 None:intergenic 20.0%
!! ATATAAAAGTAACTTTGTAG+AGG - chr3_2:71315499-71315518 None:intergenic 20.0%
!!! TTTTGTCTAGTAATTGTAAT+AGG + chr3_2:71315885-71315904 Msa0422180:intron 20.0%
!! AACAATTATATGCTATATGT+TGG + chr3_2:71315961-71315980 Msa0422180:intron 20.0%
!!! GCTCTAAAAATTCAATAAAT+TGG - chr3_2:71316168-71316187 None:intergenic 20.0%
!! TTTACATTTAGAAGGTTTAA+GGG - chr3_2:71316288-71316307 None:intergenic 20.0%
!!! AATTATTGTTTGGCTTTTAT+TGG - chr3_2:71316626-71316645 None:intergenic 20.0%
!!! ATAGCTTCATTTTTTAAGAA+CGG + chr3_2:71317124-71317143 Msa0422180:three_prime_UTR 20.0%
!!! CGGATTTTATAGTATTTTTT+TGG + chr3_2:71317144-71317163 Msa0422180:three_prime_UTR 20.0%
!!! CTTAATCTTCTTTGTTGTTT+GGG - chr3_2:71312073-71312092 None:intergenic 25.0%
! TTGATGAACTATGTTCAAAA+AGG + chr3_2:71312404-71312423 Msa0422180:exon 25.0%
!!! ACTATGTTCAAAAAGGTATT+TGG + chr3_2:71312411-71312430 Msa0422180:exon 25.0%
!!! AGCTTTTTTATAAACAAGCT+CGG - chr3_2:71312714-71312733 None:intergenic 25.0%
! TCATAAACAATTTGCAAATG+AGG - chr3_2:71312996-71313015 None:intergenic 25.0%
!!! TTGATCAATCGTTTATTTTG+AGG + chr3_2:71313075-71313094 Msa0422180:CDS 25.0%
! ATTTGAAAATGTCTTTGCAT+CGG + chr3_2:71313141-71313160 Msa0422180:CDS 25.0%
! AATTTATGCTCTTCTTTCAA+TGG - chr3_2:71313314-71313333 None:intergenic 25.0%
!!! TCCTTTGAACTATTTGTTAT+CGG - chr3_2:71313482-71313501 None:intergenic 25.0%
! TATTCAAACAATGAGAAACA+CGG - chr3_2:71313589-71313608 None:intergenic 25.0%
! AATTTAATACCTGAAAATGG+GGG - chr3_2:71313613-71313632 None:intergenic 25.0%
!!! TTTTTTCAACGAAAAAAGAG+CGG - chr3_2:71313668-71313687 None:intergenic 25.0%
! CAATAAGTACAACAATCATA+TGG - chr3_2:71313734-71313753 None:intergenic 25.0%
!!! TGAAAAGTATATCCTTTTCT+TGG - chr3_2:71313776-71313795 None:intergenic 25.0%
! TGGATTACAACAAATAATCA+GGG - chr3_2:71313913-71313932 None:intergenic 25.0%
!! ATGGATTACAACAAATAATC+AGG - chr3_2:71313914-71313933 None:intergenic 25.0%
! CATATGATTATGACATTCTA+TGG - chr3_2:71313933-71313952 None:intergenic 25.0%
! GTTATAAGACACATATTTAC+TGG - chr3_2:71314010-71314029 None:intergenic 25.0%
! ATTTAAAAGCTTATGGTCTT+AGG + chr3_2:71314235-71314254 Msa0422180:intron 25.0%
!! TTAGTTGATGTTGCATTATT+GGG - chr3_2:71314267-71314286 None:intergenic 25.0%
!! TTTAGTTGATGTTGCATTAT+TGG - chr3_2:71314268-71314287 None:intergenic 25.0%
!!! CTTCTTTTACCTTTAACTTT+TGG + chr3_2:71314332-71314351 Msa0422180:intron 25.0%
! AATTCAGATAATATTCACAG+TGG - chr3_2:71314453-71314472 None:intergenic 25.0%
! TTTATGGGGAAAAATAGAAT+CGG - chr3_2:71314497-71314516 None:intergenic 25.0%
! ATAAGAATGTTATGTTGGAT+AGG - chr3_2:71314524-71314543 None:intergenic 25.0%
! CAGAAATAAGAATGTTATGT+TGG - chr3_2:71314529-71314548 None:intergenic 25.0%
!!! AATTTTCCTTTAAGCTTTAG+AGG + chr3_2:71314633-71314652 Msa0422180:intron 25.0%
! AAGTAGAAAAGATGAAATGA+AGG - chr3_2:71314692-71314711 None:intergenic 25.0%
! ACCAAAACTATAGAAATTTG+TGG - chr3_2:71314858-71314877 None:intergenic 25.0%
! TTCCATGCATATGTTTAAAA+AGG - chr3_2:71315005-71315024 None:intergenic 25.0%
!!! GAACAAACTGTAACTTTTTT+CGG - chr3_2:71315080-71315099 None:intergenic 25.0%
! AAGATCTATTGTTATGTATG+AGG + chr3_2:71315205-71315224 Msa0422180:intron 25.0%
! AGATCTATTGTTATGTATGA+GGG + chr3_2:71315206-71315225 Msa0422180:intron 25.0%
! ATCAAAAATAACTGCTAACA+GGG - chr3_2:71315291-71315310 None:intergenic 25.0%
! AATCAAAAATAACTGCTAAC+AGG - chr3_2:71315292-71315311 None:intergenic 25.0%
! TTTCTATTGATATGTCAAAC+AGG + chr3_2:71315463-71315482 Msa0422180:intron 25.0%
! AAACCTTCCTAAATTATGAA+GGG - chr3_2:71315529-71315548 None:intergenic 25.0%
! TAAACCTTCCTAAATTATGA+AGG - chr3_2:71315530-71315549 None:intergenic 25.0%
! TCATTCTTGTCTATTATACA+CGG - chr3_2:71315747-71315766 None:intergenic 25.0%
! CAATTACTAGACAAAACTTA+TGG - chr3_2:71315881-71315900 None:intergenic 25.0%
!! CTTCATAGTTTCAAGTAAAA+TGG - chr3_2:71316131-71316150 None:intergenic 25.0%
!! TTTTCTTTCATTACATGTCT+CGG + chr3_2:71316206-71316225 Msa0422180:intron 25.0%
! CTTTACATTTAGAAGGTTTA+AGG - chr3_2:71316289-71316308 None:intergenic 25.0%
! CTTTGTTCTTTACATTTAGA+AGG - chr3_2:71316296-71316315 None:intergenic 25.0%
!!! AAACACTTCTAGAATGAAAT+TGG - chr3_2:71316343-71316362 None:intergenic 25.0%
! ACTCTGCATAAATTATTGTT+TGG - chr3_2:71316636-71316655 None:intergenic 25.0%
! AGAGAAATACAAAAACTCAT+TGG + chr3_2:71316840-71316859 Msa0422180:CDS 25.0%
!! GAACATTTAAAGTCAAACTA+TGG - chr3_2:71316877-71316896 None:intergenic 25.0%
! GGCTATTTATTATTAAGTAG+TGG + chr3_2:71317236-71317255 Msa0422180:three_prime_UTR 25.0%
!! GCTTAATCTTCTTTGTTGTT+TGG - chr3_2:71312074-71312093 None:intergenic 30.0%
AAACTTTGATTCACCGAATT+GGG + chr3_2:71312193-71312212 Msa0422180:five_prime_UTR 30.0%
TATGGTGAAAATTAGAGAAG+TGG + chr3_2:71312244-71312263 Msa0422180:five_prime_UTR 30.0%
ATGGTGAAAATTAGAGAAGT+GGG + chr3_2:71312245-71312264 Msa0422180:five_prime_UTR 30.0%
! CCTTTTTCTTATCTAGGTAA+GGG - chr3_2:71312278-71312297 None:intergenic 30.0%
CCTTACCTAGATAAGAAAAA+GGG + chr3_2:71312276-71312295 Msa0422180:five_prime_UTR 30.0%
! ACAAACCCTTTTTCTTATCT+AGG - chr3_2:71312284-71312303 None:intergenic 30.0%
CAGAATCATCATCTTCATAT+CGG + chr3_2:71312315-71312334 Msa0422180:five_prime_UTR 30.0%
AGAATCATCATCTTCATATC+GGG + chr3_2:71312316-71312335 Msa0422180:five_prime_UTR 30.0%
ATTCCTAAAAAGTCCTCAAA+AGG + chr3_2:71312438-71312457 Msa0422180:CDS 30.0%
TCTAATTCTTCTTTGAATGC+AGG + chr3_2:71312567-71312586 Msa0422180:CDS 30.0%
! TATAAACAAGCTCGGTTTTT+CGG - chr3_2:71312706-71312725 None:intergenic 30.0%
TTTCCTTAAGATGCTTAGTA+GGG - chr3_2:71312770-71312789 None:intergenic 30.0%
! TTTTCCTTAAGATGCTTAGT+AGG - chr3_2:71312771-71312790 None:intergenic 30.0%
TACTAAGCATCTTAAGGAAA+AGG + chr3_2:71312770-71312789 Msa0422180:CDS 30.0%
TTCAAATACTCTCTTTCTCT+AGG - chr3_2:71313128-71313147 None:intergenic 30.0%
! TTGATTGATTTCCTGATGAA+AGG - chr3_2:71313194-71313213 None:intergenic 30.0%
! TAATGGAATTGCTGAGTTTT+TGG + chr3_2:71313253-71313272 Msa0422180:CDS 30.0%
! AGAAGAGCATAAATTGTTTC+TGG + chr3_2:71313319-71313338 Msa0422180:CDS 30.0%
TTATTGCATTACTCAGTTTG+TGG + chr3_2:71313403-71313422 Msa0422180:CDS 30.0%
!! AACTTGCTGATACAATCATA+AGG + chr3_2:71313438-71313457 Msa0422180:CDS 30.0%
! ACTTGCTGATACAATCATAA+GGG + chr3_2:71313439-71313458 Msa0422180:CDS 30.0%
AGTTGTAAGTATGTGTCTTA+AGG - chr3_2:71313834-71313853 None:intergenic 30.0%
!! ATTTTTCAAACACCTTTTGC+AGG - chr3_2:71314113-71314132 None:intergenic 30.0%
TTAATCTTGATGCAAGCTTA+AGG + chr3_2:71314147-71314166 Msa0422180:intron 30.0%
! CTCTCTTGTGCTATTAATTT+CGG + chr3_2:71314196-71314215 Msa0422180:intron 30.0%
!! AAAGTACCTCTAAAGCTTAA+AGG - chr3_2:71314642-71314661 None:intergenic 30.0%
! TGGAAATTTTCAGCTGTAAT+TGG - chr3_2:71314756-71314775 None:intergenic 30.0%
TGTACTTTCACTTTCATCAA+TGG - chr3_2:71314779-71314798 None:intergenic 30.0%
! GCCACAAATTTCTATAGTTT+TGG + chr3_2:71314854-71314873 Msa0422180:intron 30.0%
! CACCTTTTTAAACATATGCA+TGG + chr3_2:71315000-71315019 Msa0422180:intron 30.0%
!!! ACTGTAACTTTTTTCGGATT+GGG - chr3_2:71315074-71315093 None:intergenic 30.0%
!!! AACTGTAACTTTTTTCGGAT+TGG - chr3_2:71315075-71315094 None:intergenic 30.0%
AGTGAGTTCAATATCTCATA+TGG + chr3_2:71315129-71315148 Msa0422180:intron 30.0%
! GGTGTCATAAATGTAGTAAT+TGG - chr3_2:71315270-71315289 None:intergenic 30.0%
AGTATCATAAACTCTTCTCA+AGG - chr3_2:71315388-71315407 None:intergenic 30.0%
!! TAAAAGTGTTTGTAAGCTTG+TGG + chr3_2:71315561-71315580 Msa0422180:intron 30.0%
! CTTGAAGGTAATTTTTGTGT+TGG + chr3_2:71315584-71315603 Msa0422180:intron 30.0%
AGCTGTGACGATAAATAATT+AGG + chr3_2:71315771-71315790 Msa0422180:intron 30.0%
TGTGACGATAAATAATTAGG+TGG + chr3_2:71315774-71315793 Msa0422180:intron 30.0%
ATAAAGTATAGACGATTTGC+AGG - chr3_2:71315811-71315830 None:intergenic 30.0%
AAGACATACTATATTCTGTC+AGG + chr3_2:71315925-71315944 Msa0422180:intron 30.0%
GACGAATCTAAATTTGACAT+GGG - chr3_2:71316061-71316080 None:intergenic 30.0%
TGACGAATCTAAATTTGACA+TGG - chr3_2:71316062-71316081 None:intergenic 30.0%
AAGAAAAAATGACAGAACAC+TGG - chr3_2:71316193-71316212 None:intergenic 30.0%
! ATTTTTCTTCGTCTTTTGCA+TGG + chr3_2:71316405-71316424 Msa0422180:intron 30.0%
!! TTTGTTGCTTTCTTCATTGA+TGG + chr3_2:71316432-71316451 Msa0422180:intron 30.0%
!! TTGTTGCTTTCTTCATTGAT+GGG + chr3_2:71316433-71316452 Msa0422180:intron 30.0%
AATTCAAGATTTAGGCACAT+AGG - chr3_2:71316463-71316482 None:intergenic 30.0%
TCTACAGCAATTCAAGATTT+AGG - chr3_2:71316471-71316490 None:intergenic 30.0%
AAATCTTGAATTGCTGTAGA+AGG + chr3_2:71316471-71316490 Msa0422180:intron 30.0%
GATTATATGCATCAAGTGAA+TGG + chr3_2:71316569-71316588 Msa0422180:intron 30.0%
!! TTTTGAGAAAGATCCAACTT+TGG + chr3_2:71316599-71316618 Msa0422180:intron 30.0%
TTTGAGAAAGATCCAACTTT+GGG + chr3_2:71316600-71316619 Msa0422180:intron 30.0%
! ACTGATATTGTCTTTGTTTC+AGG + chr3_2:71316718-71316737 Msa0422180:intron 30.0%
!!! AGTATTTTTTTGGCATGTGA+TGG + chr3_2:71317154-71317173 Msa0422180:three_prime_UTR 30.0%
!!! GTATTTTTTTGGCATGTGAT+GGG + chr3_2:71317155-71317174 Msa0422180:three_prime_UTR 30.0%
ATTCAAGAAATTGCCTTTCT+TGG - chr3_2:71317185-71317204 None:intergenic 30.0%
AAATAGCCTTCAATTCCTAT+AGG - chr3_2:71317224-71317243 None:intergenic 30.0%
ATAAGCAAAATGCACTAGTT+AGG - chr3_2:71317292-71317311 None:intergenic 30.0%
!!! CTTTTTGAGATCAGAAACAG+TGG - chr3_2:71312156-71312175 None:intergenic 35.0%
CAAACTTTGATTCACCGAAT+TGG + chr3_2:71312192-71312211 Msa0422180:five_prime_UTR 35.0%
!! ACTTTGAAGCATACCCAATT+CGG - chr3_2:71312209-71312228 None:intergenic 35.0%
CCCTTACCTAGATAAGAAAA+AGG + chr3_2:71312275-71312294 Msa0422180:five_prime_UTR 35.0%
! CCCTTTTTCTTATCTAGGTA+AGG - chr3_2:71312279-71312298 None:intergenic 35.0%
CGATATGAAGATGATGATTC+TGG - chr3_2:71312317-71312336 None:intergenic 35.0%
CAGAACAAACACAAAGAAGA+AGG - chr3_2:71312383-71312402 None:intergenic 35.0%
!! GAACCTTTTGAGGACTTTTT+AGG - chr3_2:71312444-71312463 None:intergenic 35.0%
!!! AGCAACATCACTGTTTTTTG+AGG - chr3_2:71312514-71312533 None:intergenic 35.0%
CCATTGGAATTCTCATTCAT+AGG - chr3_2:71312633-71312652 None:intergenic 35.0%
CCTATGAATGAGAATTCCAA+TGG + chr3_2:71312630-71312649 Msa0422180:CDS 35.0%
ATGAAGCTTTACCAGCATTT+AGG + chr3_2:71312667-71312686 Msa0422180:CDS 35.0%
TGAAGCTTTACCAGCATTTA+GGG + chr3_2:71312668-71312687 Msa0422180:CDS 35.0%
TACTGAGAATGTAATGCAAG+AGG + chr3_2:71312854-71312873 Msa0422180:CDS 35.0%
AATGCAAGAGGTTGTTAAGA+TGG + chr3_2:71312866-71312885 Msa0422180:CDS 35.0%
! TTTGAGACTGAGAAGCATAA+TGG + chr3_2:71313236-71313255 Msa0422180:CDS 35.0%
!! TGCTGAGTTTTTGGAAATTC+TGG + chr3_2:71313262-71313281 Msa0422180:CDS 35.0%
!! GCTGAGTTTTTGGAAATTCT+GGG + chr3_2:71313263-71313282 Msa0422180:CDS 35.0%
!! CTGAGTTTTTGGAAATTCTG+GGG + chr3_2:71313264-71313283 Msa0422180:CDS 35.0%
!! ATTCTGGGGAGTATCATTAA+TGG + chr3_2:71313278-71313297 Msa0422180:CDS 35.0%
TGATACATTGCTAAGCACTT+TGG - chr3_2:71313371-71313390 None:intergenic 35.0%
CTTGCTGATACAATCATAAG+GGG + chr3_2:71313440-71313459 Msa0422180:CDS 35.0%
TTGCTGATACAATCATAAGG+GGG + chr3_2:71313441-71313460 Msa0422180:CDS 35.0%
GCCGATAACAAATAGTTCAA+AGG + chr3_2:71313478-71313497 Msa0422180:CDS 35.0%
TCAAAGGAAGTTATGTTCCT+AGG + chr3_2:71313494-71313513 Msa0422180:CDS 35.0%
GGTAAAAGAAAATGAGCTTG+AGG - chr3_2:71313647-71313666 None:intergenic 35.0%
CAAAAATCGTTCCTGAACTA+CGG + chr3_2:71313862-71313881 Msa0422180:intron 35.0%
ACACATATTTACTGGAAACC+TGG - chr3_2:71314002-71314021 None:intergenic 35.0%
GTTTAGCAGCTTTCTATGAA+GGG - chr3_2:71314044-71314063 None:intergenic 35.0%
TGTTTAGCAGCTTTCTATGA+AGG - chr3_2:71314045-71314064 None:intergenic 35.0%
TAATAGCACAAGAGAGATGA+GGG - chr3_2:71314192-71314211 None:intergenic 35.0%
TTAATAGCACAAGAGAGATG+AGG - chr3_2:71314193-71314212 None:intergenic 35.0%
TATATGCCAACCATTAAGAG+TGG - chr3_2:71314300-71314319 None:intergenic 35.0%
!! GAGCTATAGAAGCATTGATA+AGG - chr3_2:71314382-71314401 None:intergenic 35.0%
TAGTAGAATCTTGTCCTATG+CGG - chr3_2:71314424-71314443 None:intergenic 35.0%
!!! TGTTGGATAGGTGGTTTTAT+GGG - chr3_2:71314512-71314531 None:intergenic 35.0%
!! ATGTTGGATAGGTGGTTTTA+TGG - chr3_2:71314513-71314532 None:intergenic 35.0%
AGAATGTTATGTTGGATAGG+TGG - chr3_2:71314521-71314540 None:intergenic 35.0%
! TCTTTTCTACTTGAACCCTA+TGG + chr3_2:71314700-71314719 Msa0422180:intron 35.0%
ACATTTGTGATTCCCAACAA+TGG - chr3_2:71314729-71314748 None:intergenic 35.0%
ACTTTCACTTTCATCAATGG+TGG - chr3_2:71314776-71314795 None:intergenic 35.0%
AATTTGTGGCATCGTTTCAA+AGG - chr3_2:71314844-71314863 None:intergenic 35.0%
!!! TCTATAGTTTTGGTCCTAAG+AGG + chr3_2:71314864-71314883 Msa0422180:intron 35.0%
TCTATACACAGACTACATAG+AGG - chr3_2:71314893-71314912 None:intergenic 35.0%
ACCTTCTTTCTCTATCAAGA+AGG + chr3_2:71315179-71315198 Msa0422180:intron 35.0%
CTATTGTTATGTATGAGGGA+TGG + chr3_2:71315210-71315229 Msa0422180:intron 35.0%
TAACATACAACTCCCATTGT+AGG + chr3_2:71315318-71315337 Msa0422180:intron 35.0%
AACATACAACTCCCATTGTA+GGG + chr3_2:71315319-71315338 Msa0422180:intron 35.0%
TCCTAGTAACTTCACATTGA+AGG + chr3_2:71315343-71315362 Msa0422180:intron 35.0%
TCCTTCAATGTGAAGTTACT+AGG - chr3_2:71315347-71315366 None:intergenic 35.0%
AGTACGTCCCTTCATAATTT+AGG + chr3_2:71315519-71315538 Msa0422180:intron 35.0%
! AATGACTATCTTTTCCCTAG+AGG + chr3_2:71315637-71315656 Msa0422180:intron 35.0%
GTTGATGTCTTTATCTGAAG+AGG + chr3_2:71315846-71315865 Msa0422180:intron 35.0%
CAAAGATACACTATCACTAG+TGG - chr3_2:71316029-71316048 None:intergenic 35.0%
CTAAGCATGGCATACATAAA+AGG - chr3_2:71316255-71316274 None:intergenic 35.0%
AAAGAACAAAGCATGTGTCA+AGG + chr3_2:71316305-71316324 Msa0422180:intron 35.0%
AAGAACAAAGCATGTGTCAA+GGG + chr3_2:71316306-71316325 Msa0422180:intron 35.0%
TGAGTAATAGAGACATCATG+CGG - chr3_2:71316531-71316550 None:intergenic 35.0%
! GATATTGTCTTTGTTTCAGG+TGG + chr3_2:71316721-71316740 Msa0422180:intron 35.0%
GTTTGATTAAGTTCACGATG+TGG - chr3_2:71316778-71316797 None:intergenic 35.0%
! TTTTGTATTTCTCTCCAACG+CGG - chr3_2:71316834-71316853 None:intergenic 35.0%
ATCTGCAGGTTAGATAGAAA+TGG + chr3_2:71317084-71317103 Msa0422180:exon 35.0%
CTTTGACATTCACTTCCTAT+AGG + chr3_2:71317206-71317225 Msa0422180:three_prime_UTR 35.0%
TCACTTCCTATAGGAATTGA+AGG + chr3_2:71317215-71317234 Msa0422180:three_prime_UTR 35.0%
AAAATGCACTAGTTAGGCTT+TGG - chr3_2:71317286-71317305 None:intergenic 35.0%
! TGGGTTGAAAAGAGAGAGAA+AGG - chr3_2:71312054-71312073 None:intergenic 40.0%
! TTTGAGATCAGAAACAGTGG+TGG - chr3_2:71312153-71312172 None:intergenic 40.0%
! ACGATTCTCAGAACCTTTTG+AGG - chr3_2:71312454-71312473 None:intergenic 40.0%
!!! TTTTTGAGGTTGCAACACCA+TGG - chr3_2:71312500-71312519 None:intergenic 40.0%
TCTTCTTTGAATGCAGGACA+AGG + chr3_2:71312573-71312592 Msa0422180:CDS 40.0%
CAAGGACAGTTTCATAGTCA+TGG + chr3_2:71312591-71312610 Msa0422180:CDS 40.0%
!! AAGCTCGGTTTTTCGGAATT+CGG - chr3_2:71312699-71312718 None:intergenic 40.0%
TGACCCTACTAAGCATCTTA+AGG + chr3_2:71312764-71312783 Msa0422180:CDS 40.0%
GGAGATTAAGAGACAAGCTT+TGG + chr3_2:71312791-71312810 Msa0422180:CDS 40.0%
TCAATGAGCTTATTCTCACG+CGG - chr3_2:71312927-71312946 None:intergenic 40.0%
CGTGAGAATAAGCTCATTGA+TGG + chr3_2:71312927-71312946 Msa0422180:CDS 40.0%
!! CATTGATGGCGTTGAATTAG+AGG + chr3_2:71312941-71312960 Msa0422180:CDS 40.0%
!! CTCTCTTTCTCTAGGATCTT+CGG - chr3_2:71313120-71313139 None:intergenic 40.0%
ATGTCTTTGCATCGGATCTA+TGG + chr3_2:71313149-71313168 Msa0422180:CDS 40.0%
TCGGATCTATGGCAAGTTAA+TGG + chr3_2:71313160-71313179 Msa0422180:CDS 40.0%
!! AAGCACTTTGGTTTGTGCAA+CGG - chr3_2:71313359-71313378 None:intergenic 40.0%
TAAGGGGGTTATTGAAGTAC+TGG + chr3_2:71313456-71313475 Msa0422180:CDS 40.0%
AGTTATGTTCCTAGGTGAGT+TGG + chr3_2:71313502-71313521 Msa0422180:CDS 40.0%
! TTTGAATAGCCCCCATTTTC+AGG + chr3_2:71313601-71313620 Msa0422180:CDS 40.0%
AGAAAGCTGCTAAACATGCT+AGG + chr3_2:71314049-71314068 Msa0422180:intron 40.0%
ATCTTGATGCAAGCTTAAGG+TGG + chr3_2:71314150-71314169 Msa0422180:intron 40.0%
AATAGCACAAGAGAGATGAG+GGG - chr3_2:71314191-71314210 None:intergenic 40.0%
! AAGCTTATGGTCTTAGGAGA+TGG + chr3_2:71314241-71314260 Msa0422180:intron 40.0%
!! ACCTCTGAAACCACTCTTAA+TGG + chr3_2:71314287-71314306 Msa0422180:intron 40.0%
ACCATTAAGAGTGGTTTCAG+AGG - chr3_2:71314291-71314310 None:intergenic 40.0%
CTGAAACCACTCTTAATGGT+TGG + chr3_2:71314291-71314310 Msa0422180:intron 40.0%
GGTTGGCATATAGTTCTTCT+TGG + chr3_2:71314308-71314327 Msa0422180:intron 40.0%
!!! GTTGGATAGGTGGTTTTATG+GGG - chr3_2:71314511-71314530 None:intergenic 40.0%
GTTGTACGTGAGTGAATGTT+GGG - chr3_2:71314586-71314605 None:intergenic 40.0%
TGTTGTACGTGAGTGAATGT+TGG - chr3_2:71314587-71314606 None:intergenic 40.0%
AACCCTATGGTTTCCATTGT+TGG + chr3_2:71314713-71314732 Msa0422180:intron 40.0%
ACCCTATGGTTTCCATTGTT+GGG + chr3_2:71314714-71314733 Msa0422180:intron 40.0%
TCCCAACAATGGAAACCATA+GGG - chr3_2:71314718-71314737 None:intergenic 40.0%
TTCCCAACAATGGAAACCAT+AGG - chr3_2:71314719-71314738 None:intergenic 40.0%
GTCTGTGTATAGACTTTCCT+TGG + chr3_2:71314900-71314919 Msa0422180:intron 40.0%
! CTTACTGTTTTGTGTCTGCT+TGG - chr3_2:71315111-71315130 None:intergenic 40.0%
CATATGGACTCATTTCAGCA+TGG + chr3_2:71315145-71315164 Msa0422180:intron 40.0%
GCCTTCTTGATAGAGAAAGA+AGG - chr3_2:71315183-71315202 None:intergenic 40.0%
GTTACTAGGATCCCTACAAT+GGG - chr3_2:71315333-71315352 None:intergenic 40.0%
AGTTACTAGGATCCCTACAA+TGG - chr3_2:71315334-71315353 None:intergenic 40.0%
CGTCCCTTCATAATTTAGGA+AGG + chr3_2:71315523-71315542 Msa0422180:intron 40.0%
TTTGTAAGCTTGTGGCTTGA+AGG + chr3_2:71315569-71315588 Msa0422180:intron 40.0%
CATAAGATCAGCTTCCTCTA+GGG - chr3_2:71315654-71315673 None:intergenic 40.0%
ACATAAGATCAGCTTCCTCT+AGG - chr3_2:71315655-71315674 None:intergenic 40.0%
GCTGATCTTATGTTCATCTG+AGG + chr3_2:71315662-71315681 Msa0422180:intron 40.0%
!! TGCCGACTTTCTGTTCATTA+TGG + chr3_2:71315721-71315740 Msa0422180:intron 40.0%
GGCCATAATGAACAGAAAGT+CGG - chr3_2:71315726-71315745 None:intergenic 40.0%
GTCTTTATCTGAAGAGGTGA+AGG + chr3_2:71315852-71315871 Msa0422180:intron 40.0%
GGGATCGTAAAAACTAAGCA+TGG - chr3_2:71316268-71316287 None:intergenic 40.0%
!! TCTAGAAGTGTTTGCATGAC+TGG + chr3_2:71316350-71316369 Msa0422180:intron 40.0%
CTACTGCAATTTGCAAGACT+TGG + chr3_2:71316495-71316514 Msa0422180:intron 40.0%
! ATTGTCTTTGTTTCAGGTGG+CGG + chr3_2:71316724-71316743 Msa0422180:intron 40.0%
TTTGTATTTCTCTCCAACGC+GGG - chr3_2:71316833-71316852 None:intergenic 40.0%
GTTTGAGCAAGACGAATCAA+AGG + chr3_2:71316949-71316968 Msa0422180:CDS 40.0%
GTTACTTGCAGCTTTCTTTG+CGG - chr3_2:71317029-71317048 None:intergenic 40.0%
!!! TTTTTTGGCATGTGATGGGT+TGG + chr3_2:71317159-71317178 Msa0422180:three_prime_UTR 40.0%
!! GGTTCTGAGAATCGTGAACA+AGG + chr3_2:71312459-71312478 Msa0422180:CDS 45.0%
TCTGAGAATCGTGAACAAGG+TGG + chr3_2:71312462-71312481 Msa0422180:CDS 45.0%
GGTGGAAATTCAAGAAGCCA+TGG + chr3_2:71312480-71312499 Msa0422180:CDS 45.0%
AGTGATGTTGCTACACAACC+TGG + chr3_2:71312522-71312541 Msa0422180:CDS 45.0%
GTGATGTTGCTACACAACCT+GGG + chr3_2:71312523-71312542 Msa0422180:CDS 45.0%
! TTACCAGTTTTGCTACTCCC+AGG - chr3_2:71312543-71312562 None:intergenic 45.0%
TTCGGAACATCCCTAAATGC+TGG - chr3_2:71312681-71312700 None:intergenic 45.0%
! TGATGGCGTTGAATTAGAGG+AGG + chr3_2:71312944-71312963 Msa0422180:CDS 45.0%
ATTTGCAAATGAGGCCACGA+AGG - chr3_2:71312987-71313006 None:intergenic 45.0%
! ATTTGTTGCATCACCTGAGC+TGG + chr3_2:71313028-71313047 Msa0422180:CDS 45.0%
! TATGTTCCTAGGTGAGTTGG+AGG + chr3_2:71313505-71313524 Msa0422180:CDS 45.0%
ATACATCGCTGGAATTCTGG+AGG - chr3_2:71313551-71313570 None:intergenic 45.0%
TCCAGAATTCCAGCGATGTA+TGG + chr3_2:71313550-71313569 Msa0422180:CDS 45.0%
ACCATACATCGCTGGAATTC+TGG - chr3_2:71313554-71313573 None:intergenic 45.0%
ACAATAGCACCATACATCGC+TGG - chr3_2:71313562-71313581 None:intergenic 45.0%
GCAGTGTTCTTGCCAAGAAA+AGG + chr3_2:71313761-71313780 Msa0422180:intron 45.0%
ATCAAGCAAGTCCGTAGTTC+AGG - chr3_2:71313876-71313895 None:intergenic 45.0%
! AAGGAGTACAGTCAGATTCC+AGG + chr3_2:71313981-71314000 Msa0422180:intron 45.0%
! TCAAACACCTTTTGCAGGCA+GGG - chr3_2:71314108-71314127 None:intergenic 45.0%
! TTCAAACACCTTTTGCAGGC+AGG - chr3_2:71314109-71314128 None:intergenic 45.0%
ATGCAAGCTTAAGGTGGTGA+GGG + chr3_2:71314156-71314175 Msa0422180:intron 45.0%
ATAGCACAAGAGAGATGAGG+GGG - chr3_2:71314190-71314209 None:intergenic 45.0%
AATCTTGTCCTATGCGGTCT+GGG - chr3_2:71314418-71314437 None:intergenic 45.0%
CTACATAGAGGCTTCCTCTT+AGG - chr3_2:71314881-71314900 None:intergenic 45.0%
ACCCTACTGCTTTCTGACTT+AGG + chr3_2:71315024-71315043 Msa0422180:intron 45.0%
CCCTAAGTCAGAAAGCAGTA+GGG - chr3_2:71315028-71315047 None:intergenic 45.0%
CCCTACTGCTTTCTGACTTA+GGG + chr3_2:71315025-71315044 Msa0422180:intron 45.0%
ACCCTAAGTCAGAAAGCAGT+AGG - chr3_2:71315029-71315048 None:intergenic 45.0%
TTGTGTCTGCTTGGTCATCA+AGG - chr3_2:71315102-71315121 None:intergenic 45.0%
ACATGCAAAAAGTCGTGCAG+AGG - chr3_2:71315247-71315266 None:intergenic 45.0%
CAAAGCATGTGTCAAGGGAT+TGG + chr3_2:71316311-71316330 Msa0422180:intron 45.0%
! GGCTTTTATTGGCCCAAAGT+TGG - chr3_2:71316615-71316634 None:intergenic 45.0%
!! CGGAAAGAGCTTTGTTCTTG+TGG + chr3_2:71316744-71316763 Msa0422180:CDS 45.0%
GAGCAAGACGAATCAAAGGA+AGG + chr3_2:71316953-71316972 Msa0422180:CDS 45.0%
ATCTAACCTGCAGATTTGCG+AGG - chr3_2:71317079-71317098 None:intergenic 45.0%
GAGATCAGAAACAGTGGTGG+TGG - chr3_2:71312150-71312169 None:intergenic 50.0%
CAACCTGGGAGTAGCAAAAC+TGG + chr3_2:71312537-71312556 Msa0422180:CDS 50.0%
AGCTTATTCTCACGCGGTTG+AGG - chr3_2:71312921-71312940 None:intergenic 50.0%
! TGGCGTTGAATTAGAGGAGG+AGG + chr3_2:71312947-71312966 Msa0422180:CDS 50.0%
ACCTGAGCTGGATGCAAAGT+TGG + chr3_2:71313040-71313059 Msa0422180:CDS 50.0%
AGACTTCCTCCAACTCACCT+AGG - chr3_2:71313514-71313533 None:intergenic 50.0%
! AGGTGAGTTGGAGGAAGTCT+TGG + chr3_2:71313514-71313533 Msa0422180:CDS 50.0%
! CAGGCAGGGTTTGGAGTAAA+AGG - chr3_2:71314094-71314113 None:intergenic 50.0%
GATGCAAGCTTAAGGTGGTG+AGG + chr3_2:71314155-71314174 Msa0422180:intron 50.0%
GAATCTTGTCCTATGCGGTC+TGG - chr3_2:71314419-71314438 None:intergenic 50.0%
AACACAGCGAAACTGCTCCA+AGG - chr3_2:71314920-71314939 None:intergenic 50.0%
TTTCCTGACCTGGAGTGTGT+CGG - chr3_2:71314948-71314967 None:intergenic 50.0%
TCCAGGTCAGGAAACAGTCA+GGG + chr3_2:71314954-71314973 Msa0422180:intron 50.0%
TCCAGTTCCTTCGTGACCAA+TGG + chr3_2:71316663-71316682 Msa0422180:intron 50.0%
TCCATTGGTCACGAAGGAAC+TGG - chr3_2:71316667-71316686 None:intergenic 50.0%
CATTGCAACTGCAGCTCCAT+TGG - chr3_2:71316682-71316701 None:intergenic 50.0%
TCCAACGCGGGAAAGATGAT+GGG - chr3_2:71316821-71316840 None:intergenic 50.0%
AAGGAAGGTGAAGTGACAGC+AGG + chr3_2:71316968-71316987 Msa0422180:CDS 50.0%
AGGAAGGTGAAGTGACAGCA+GGG + chr3_2:71316969-71316988 Msa0422180:CDS 50.0%
!! TGTGATGGGTTGGCCAAGAA+AGG + chr3_2:71317169-71317188 Msa0422180:three_prime_UTR 50.0%
AGCCTTCGATGGATCCTTCG+TGG + chr3_2:71312970-71312989 Msa0422180:CDS 55.0%
GCCAACTTTGCATCCAGCTC+AGG - chr3_2:71313044-71313063 None:intergenic 55.0%
! TGGCGCATCGACCTTTCATC+AGG + chr3_2:71313180-71313199 Msa0422180:CDS 55.0%
CTCCAAACCCTGCCTGCAAA+AGG + chr3_2:71314098-71314117 Msa0422180:intron 55.0%
! CACCTTTTGCAGGCAGGGTT+TGG - chr3_2:71314103-71314122 None:intergenic 55.0%
AGCTTAAGGTGGTGAGGGTG+AGG + chr3_2:71314161-71314180 Msa0422180:intron 55.0%
GCTTAAGGTGGTGAGGGTGA+GGG + chr3_2:71314162-71314181 Msa0422180:intron 55.0%
CATTTGTGCCCAGACCGCAT+AGG + chr3_2:71314407-71314426 Msa0422180:intron 55.0%
CTCCAGGTCAGGAAACAGTC+AGG + chr3_2:71314953-71314972 Msa0422180:intron 55.0%
TGCAGCTCCATTGGTCACGA+AGG - chr3_2:71316673-71316692 None:intergenic 55.0%
TCCCATCATCTTTCCCGCGT+TGG + chr3_2:71316817-71316836 Msa0422180:CDS 55.0%
CTCCAACGCGGGAAAGATGA+TGG - chr3_2:71316822-71316841 None:intergenic 55.0%
CGAAGCCACATGGAAACGCT+TGG + chr3_2:71316994-71317013 Msa0422180:CDS 55.0%
AGCCACATGGAAACGCTTGG+AGG + chr3_2:71316997-71317016 Msa0422180:CDS 55.0%
CTCCTCCAAGCGTTTCCATG+TGG - chr3_2:71317002-71317021 None:intergenic 55.0%
CACATGGAAACGCTTGGAGG+AGG + chr3_2:71317000-71317019 Msa0422180:CDS 55.0%
GCACTACCTCGCAAATCTGC+AGG + chr3_2:71317070-71317089 Msa0422180:CDS 55.0%
AGAGGAGGAGGAGCCTTCGA+TGG + chr3_2:71312959-71312978 Msa0422180:CDS 60.0%
GGCCACGAAGGATCCATCGA+AGG - chr3_2:71312975-71312994 None:intergenic 60.0%
GTTAGCTGCCGACACACTCC+AGG + chr3_2:71314937-71314956 Msa0422180:intron 60.0%
GCCCTGACTGTTTCCTGACC+TGG - chr3_2:71314958-71314977 None:intergenic 60.0%
CTGCCGACACACTCCAGGTC+AGG + chr3_2:71314942-71314961 Msa0422180:intron 65.0%
CAGCAGGGCGCGAAGCCACA+TGG + chr3_2:71316984-71317003 Msa0422180:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 71312020 71317364 71312020 ID=Msa0422180;Name=Msa0422180
chr3_2 mRNA 71312020 71317364 71312020 ID=Msa0422180-mRNA-1;Parent=Msa0422180;Name=Msa0422180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=394|1|1|1|1|1|2|268|521
chr3_2 exon 71312020 71313622 71312020 ID=Msa0422180-mRNA-1:exon:17376;Parent=Msa0422180-mRNA-1
chr3_2 exon 71316740 71317364 71316740 ID=Msa0422180-mRNA-1:exon:17377;Parent=Msa0422180-mRNA-1
chr3_2 five_prime_UTR 71312020 71312413 71312020 ID=Msa0422180-mRNA-1:five_prime_utr;Parent=Msa0422180-mRNA-1
chr3_2 CDS 71312414 71313622 71312414 ID=Msa0422180-mRNA-1:cds;Parent=Msa0422180-mRNA-1
chr3_2 CDS 71316740 71317096 71316740 ID=Msa0422180-mRNA-1:cds;Parent=Msa0422180-mRNA-1
chr3_2 three_prime_UTR 71317097 71317364 71317097 ID=Msa0422180-mRNA-1:three_prime_utr;Parent=Msa0422180-mRNA-1
Gene Sequence

>Msa0422180

ATGTTCAAAAAGGTATTTGGTAAAATTCCTAAAAAGTCCTCAAAAGGTTCTGAGAATCGTGAACAAGGTGGAAATTCAAGAAGCCATGGTGTTGCAACCTCAAAAAACAGTGATGTTGCTACACAACCTGGGAGTAGCAAAACTGGTAATTCTTCTAATTCTTCTTTGAATGCAGGACAAGGACAGTTTCATAGTCATGGTAACAAATCTTCATTACCTATGAATGAGAATTCCAATGGTAATTTTAATTCTTATGAAGCTTTACCAGCATTTAGGGATGTTCCGAATTCCGAAAAACCGAGCTTGTTTATAAAAAAGCTTAAGATGTGTAGTGTTGTTTTTGACTTCACTGACCCTACTAAGCATCTTAAGGAAAAGGAGATTAAGAGACAAGCTTTGGTTGAGCTTGTTGATTATGTGTCTTCTGTTAATGCTAAATTTACTGAGAATGTAATGCAAGAGGTTGTTAAGATGGTGTCTGTAAATATATTCAGAACACTAAGTCCTCAACCGCGTGAGAATAAGCTCATTGATGGCGTTGAATTAGAGGAGGAGGAGCCTTCGATGGATCCTTCGTGGCCTCATTTGCAAATTGTTTATGAGCTTTTTCTTAGATTTGTTGCATCACCTGAGCTGGATGCAAAGTTGGCTAAGAGATTCATTGATCAATCGTTTATTTTGAGGCTGCTTGATTTGTTTGACTCCGAAGATCCTAGAGAAAGAGAGTATTTGAAAATGTCTTTGCATCGGATCTATGGCAAGTTAATGGCGCATCGACCTTTCATCAGGAAATCAATCAATAACATCTTTTTGAACTTTGTTTTTGAGACTGAGAAGCATAATGGAATTGCTGAGTTTTTGGAAATTCTGGGGAGTATCATTAATGGTTTTGCATTGCCATTGAAAGAAGAGCATAAATTGTTTCTGGTTCGAATATTGATTCCGTTGCACAAACCAAAGTGCTTAGCAATGTATCATCAGCAGTTATCTTATTGCATTACTCAGTTTGTGGAGAAAGACTGCAAACTTGCTGATACAATCATAAGGGGGTTATTGAAGTACTGGCCGATAACAAATAGTTCAAAGGAAGTTATGTTCCTAGGTGAGTTGGAGGAAGTCTTGGAAGCAACTCAACCTCCAGAATTCCAGCGATGTATGGTGCTATTGTTTCGCCGTGTTTCTCATTGTTTGAATAGCCCCCATTTTCAGGTGGCGGAAAGAGCTTTGTTCTTGTGGAATAACGACCACATCGTGAACTTAATCAAACAAAACTGCAAAGTGATACTTCCCATCATCTTTCCCGCGTTGGAGAGAAATACAAAAACTCATTGGAATCAAGCTGTCCATAGTTTGACTTTAAATGTTCAGAAGATTTTTCACGATCTCGATCTCGATCTGTACAAAGAATGTTTACAAAAGTTTGAGCAAGACGAATCAAAGGAAGGTGAAGTGACAGCAGGGCGCGAAGCCACATGGAAACGCTTGGAGGAGGTTGCCGCAAAGAAAGCTGCAAGTAACGAAGCTGTGCTTATTAGTAAAGCACTACCTCGCAAATCTGCAGGTTAG

Protein sequence

>Msa0422180

MFKKVFGKIPKKSSKGSENREQGGNSRSHGVATSKNSDVATQPGSSKTGNSSNSSLNAGQGQFHSHGNKSSLPMNENSNGNFNSYEALPAFRDVPNSEKPSLFIKKLKMCSVVFDFTDPTKHLKEKEIKRQALVELVDYVSSVNAKFTENVMQEVVKMVSVNIFRTLSPQPRENKLIDGVELEEEEPSMDPSWPHLQIVYELFLRFVASPELDAKLAKRFIDQSFILRLLDLFDSEDPREREYLKMSLHRIYGKLMAHRPFIRKSINNIFLNFVFETEKHNGIAEFLEILGSIINGFALPLKEEHKLFLVRILIPLHKPKCLAMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPPEFQRCMVLLFRRVSHCLNSPHFQVAERALFLWNNDHIVNLIKQNCKVILPIIFPALERNTKTHWNQAVHSLTLNVQKIFHDLDLDLYKECLQKFEQDESKEGEVTAGREATWKRLEEVAAKKAASNEAVLISKALPRKSAG*