AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1263290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1263290 MtrunA17_Chr4g0075571 97.209 215 6 0 1 215 1 215 8.09e-156 430
Msa1263290 MtrunA17_Chr2g0332581 28.251 223 133 7 7 211 37 250 1.09e-19 84.3
Msa1263290 MtrunA17_Chr4g0003791 30.045 223 129 8 7 211 38 251 8.66e-19 82.4
Msa1263290 MtrunA17_Chr3g0138041 29.333 225 128 7 7 211 37 250 1.56e-18 81.3
Msa1263290 MtrunA17_Chr2g0306861 27.632 228 134 7 4 211 32 248 4.59e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1263290 AT4G22300.1 77.143 210 48 0 3 212 47 256 6.08e-126 356
Msa1263290 AT4G22305.1 69.953 213 64 0 3 215 2 214 4.52e-111 317
Msa1263290 AT4G22305.2 68.421 152 48 0 3 154 2 153 4.64e-73 221
Msa1263290 AT1G52700.4 29.596 223 130 7 7 211 27 240 5.63e-18 80.1
Msa1263290 AT5G20060.1 28.889 225 134 6 4 211 33 248 6.18e-18 80.1
Msa1263290 AT5G20060.4 28.889 225 134 6 4 211 33 248 6.18e-18 80.1
Msa1263290 AT5G20060.3 28.889 225 134 6 4 211 33 248 6.18e-18 80.1
Msa1263290 AT5G20060.2 28.889 225 134 6 4 211 33 248 6.18e-18 80.1
Msa1263290 AT1G52700.3 29.596 223 130 7 7 211 36 249 6.21e-18 80.1
Msa1263290 AT1G52700.2 29.596 223 130 7 7 211 36 249 6.21e-18 80.1
Msa1263290 AT3G15650.3 27.803 223 134 6 7 211 46 259 1.58e-16 76.3
Msa1263290 AT3G15650.1 27.803 223 134 6 7 211 36 249 1.60e-16 76.3
Msa1263290 AT3G15650.2 27.083 240 133 7 7 211 36 268 9.50e-15 71.6
Msa1263290 AT1G18773.2 55.769 52 21 1 135 186 11 60 1.32e-12 61.2
Msa1263290 AT1G18773.1 55.769 52 21 1 135 186 11 60 1.45e-12 61.2
Msa1263290 AT1G18773.4 55.769 52 21 1 135 186 11 60 2.00e-12 60.8
Msa1263290 AT1G18773.3 55.769 52 21 1 135 186 11 60 2.05e-12 60.5

Find 69 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGTTAGTTGCGAGTTTA+AGG 0.172548 8_2:+66422564 Msa1263290:CDS
TGTTGTTCACAATATTTAAT+AGG 0.260593 8_2:+66422865 Msa1263290:three_prime_UTR
AGAGATACAGATTGAAAATT+AGG 0.267362 8_2:-66422760 None:intergenic
CTGTTGTACCCTAAAACTTT+AGG 0.267673 8_2:+66421780 Msa1263290:CDS
CCACAGATAAATATATTGTT+AGG 0.286098 8_2:-66421638 None:intergenic
CAGCCCATGGGACCATAGTA+TGG 0.302977 8_2:-66422482 None:intergenic
ATGGTTCTGTAATGCCTTCA+TGG 0.330844 8_2:+66420597 Msa1263290:CDS
AATAATATGCATACAGTTGC+AGG 0.332819 8_2:-66419660 None:intergenic
GTGATTGTTAACAGTAGAAT+TGG 0.335173 8_2:-66419401 None:intergenic
AGCAAACTATTCTCGTCGTT+TGG 0.346185 8_2:-66421557 None:intergenic
TCCTTCTGCTCCTCACGCTC+CGG 0.418740 8_2:+66419634 Msa1263290:CDS
GTTCTGTGGTTACACGGTCT+TGG 0.419005 8_2:+66419536 Msa1263290:CDS
TATTGTTTCAGTGACGTGTT+TGG 0.420938 8_2:+66419339 Msa1263290:intron
ATAAGTACCCGCTTAGCTTC+AGG 0.433033 8_2:-66421864 None:intergenic
TCTGTAACAGATGAATTAAA+CGG 0.437889 8_2:-66421831 None:intergenic
TGGTATTATTAGGCTTATCC+TGG 0.441301 8_2:+66422663 Msa1263290:intron
GTCTTGATGGGTTCATTGGC+AGG 0.441657 8_2:-66419569 None:intergenic
TAATGTCTTGATGGGTTCAT+TGG 0.446375 8_2:-66419573 None:intergenic
CTCCTCGTTGTTTATTGAGT+GGG 0.455255 8_2:-66422691 None:intergenic
AGAAGTGAATAATGTCTTGA+TGG 0.461638 8_2:-66419582 None:intergenic
TTTGGAATTCCGCCACGGCT+TGG 0.463686 8_2:+66419357 Msa1263290:five_prime_UTR
CACAGATAAATATATTGTTA+GGG 0.468738 8_2:-66421637 None:intergenic
AGCAGAAGGAAAAGACCATT+TGG 0.468754 8_2:-66419621 None:intergenic
TCTTGATCTCATGTCATTGT+GGG 0.469043 8_2:+66422896 Msa1263290:three_prime_UTR
AGCTAAAGCATCTTGAGTCT+TGG 0.470537 8_2:+66422712 Msa1263290:CDS
CATACTATGGTCCCATGGGC+TGG 0.472438 8_2:+66422483 Msa1263290:CDS
TTATACAGACACCCATACTA+TGG 0.480186 8_2:+66422470 Msa1263290:intron
CATTTGGTACTTCTGAATTG+AGG 0.492380 8_2:-66419605 None:intergenic
TGCATACAGTTGCAGGTGAC+CGG 0.492555 8_2:-66419653 None:intergenic
CTCAATTCAGAAGTACCAAA+TGG 0.494388 8_2:+66419606 Msa1263290:CDS
GATTCGTTATACGCTCCGTC+AGG 0.520956 8_2:+66419207 Msa1263290:five_prime_UTR
ACAAAACTTCGAGCCGCCAT+TGG 0.521401 8_2:-66419515 None:intergenic
TTTATTGAGTGGGCAAGACC+AGG 0.534942 8_2:-66422681 None:intergenic
GCTCCTCGTTGTTTATTGAG+TGG 0.540846 8_2:-66422692 None:intergenic
TACCCTAAAACTTTAGGTGG+AGG 0.541302 8_2:+66421786 Msa1263290:CDS
CCTAACAATATATTTATCTG+TGG 0.541354 8_2:+66421638 Msa1263290:CDS
AATTACACCTGAAGCTAAGC+GGG 0.545193 8_2:+66421857 Msa1263290:CDS
GTTTGTTGCGTTCCAAGCCG+TGG 0.550410 8_2:-66419369 None:intergenic
TTCTTGATCTCATGTCATTG+TGG 0.550457 8_2:+66422895 Msa1263290:three_prime_UTR
TTACACGGTCTTGGTGACTC+TGG 0.551312 8_2:+66419545 Msa1263290:CDS
TTTATCTGTGGGTTCAGTCA+AGG 0.556548 8_2:+66421650 Msa1263290:CDS
GTTAGATAAACTTACGGCGG+AGG 0.560577 8_2:-66419231 None:intergenic
ACCGGAGCGTGAGGAGCAGA+AGG 0.561036 8_2:-66419635 None:intergenic
GAAGTGAATAATGTCTTGAT+GGG 0.571272 8_2:-66419581 None:intergenic
CACCCATACTATGGTCCCAT+GGG 0.572624 8_2:+66422479 Msa1263290:CDS
TCAACCACCTTAGACCCTGC+CGG 0.575239 8_2:+66419175 Msa1263290:five_prime_UTR
TCATGAATGTCAAACCATGA+AGG 0.576481 8_2:-66420611 None:intergenic
GATACAGATTGAAAATTAGG+AGG 0.576640 8_2:-66422757 None:intergenic
AAAACAGTATTGTTCGAGGC+AGG 0.580046 8_2:+66422511 Msa1263290:CDS
TTGTACCCTAAAACTTTAGG+TGG 0.581553 8_2:+66421783 Msa1263290:CDS
GCTAGACTTACAGCAGTCAC+AGG 0.585127 8_2:-66420638 None:intergenic
CTAACAATATATTTATCTGT+GGG 0.585694 8_2:+66421639 Msa1263290:CDS
AGCCCATGGGACCATAGTAT+GGG 0.591504 8_2:-66422481 None:intergenic
TTAGATAAACTTACGGCGGA+GGG 0.600306 8_2:-66419230 None:intergenic
TGACAAAACAGTATTGTTCG+AGG 0.612436 8_2:+66422507 Msa1263290:CDS
ACTTACGGCGGAGGGCCTGA+CGG 0.612723 8_2:-66419222 None:intergenic
ATAGACAAGGAAGTAGCTGC+TGG 0.614205 8_2:+66421608 Msa1263290:CDS
TTCTCCGGCAGGGTCTAAGG+TGG 0.616037 8_2:-66419179 None:intergenic
GATCTCATGTCATTGTGGGA+AGG 0.618408 8_2:+66422900 Msa1263290:three_prime_UTR
AAAATTAGGAGGAACTCTGT+AGG 0.620221 8_2:-66422746 None:intergenic
GAGAAAGTCATCGAGGTCAG+CGG 0.629181 8_2:-66422831 None:intergenic
TGTTGCGTTCCAAGCCGTGG+CGG 0.655159 8_2:-66419366 None:intergenic
ATCTGTGGGTTCAGTCAAGG+AGG 0.657320 8_2:+66421653 Msa1263290:CDS
ACGTGTTTGGAATTCCGCCA+CGG 0.661265 8_2:+66419352 Msa1263290:five_prime_UTR
TGTTCATGCTACAATAGACA+AGG 0.664047 8_2:+66421595 Msa1263290:CDS
CAGAACACTAGCCAATGTCA+AGG 0.665097 8_2:-66421760 None:intergenic
AAATTACACCTGAAGCTAAG+CGG 0.677674 8_2:+66421856 Msa1263290:CDS
GAAAATAGAGAAAGTCATCG+AGG 0.721050 8_2:-66422838 None:intergenic
TGCCCACTCAATAAACAACG+AGG 0.786416 8_2:+66422689 Msa1263290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGAATTATTGTTTAATTTT+GGG + chr8_2:66420886-66420905 Msa1263290:intron 10.0%
!! ATTGAAAAGATATAAAAGAA+TGG - chr8_2:66419256-66419275 None:intergenic 15.0%
!! TGTAAAATTAGGTAAATATT+TGG - chr8_2:66420226-66420245 None:intergenic 15.0%
!!! CAACATAATTTTGTAAAATT+AGG - chr8_2:66420237-66420256 None:intergenic 15.0%
!! TTAATATCTCATTTGTAATT+TGG - chr8_2:66420479-66420498 None:intergenic 15.0%
!!! ATAATATCATTTTCTAAAGT+CGG - chr8_2:66420553-66420572 None:intergenic 15.0%
!!! GTTGAATTATTGTTTAATTT+TGG + chr8_2:66420885-66420904 Msa1263290:intron 15.0%
!!! CTAAAAAGTATATATAACAA+AGG - chr8_2:66421216-66421235 None:intergenic 15.0%
!!! ATATATCCATTTTTCTATTA+AGG - chr8_2:66421700-66421719 None:intergenic 15.0%
!! TATTAACTTTCTGTATTTAA+AGG - chr8_2:66422117-66422136 None:intergenic 15.0%
!!! GTCGATAATATTTTTAATTT+AGG + chr8_2:66422274-66422293 Msa1263290:intron 15.0%
!! TAAATCATTATGTTATATGT+AGG + chr8_2:66422327-66422346 Msa1263290:intron 15.0%
!! AAATCATTATGTTATATGTA+GGG + chr8_2:66422328-66422347 Msa1263290:intron 15.0%
!!! ATTTGATTTATTGAATTTTC+TGG + chr8_2:66422399-66422418 Msa1263290:intron 15.0%
!! GAAAAAATAACCAAATTATA+GGG - chr8_2:66422604-66422623 None:intergenic 15.0%
!! TGAAAAAATAACCAAATTAT+AGG - chr8_2:66422605-66422624 None:intergenic 15.0%
!! TCGATAATAATTAAGAAAAG+AGG - chr8_2:66419707-66419726 None:intergenic 20.0%
!! ACATATTAGTATAGCTTATA+TGG + chr8_2:66420005-66420024 Msa1263290:intron 20.0%
!! TTTATTAAAATATGACCTTG+CGG + chr8_2:66420125-66420144 Msa1263290:intron 20.0%
!!! TAATATCATTTTCTAAAGTC+GGG - chr8_2:66420552-66420571 None:intergenic 20.0%
!!! TTTTGTTTATTCTTTGTAGA+TGG + chr8_2:66420578-66420597 Msa1263290:intron 20.0%
!! TTGTACAGAATTAATATACA+GGG - chr8_2:66420716-66420735 None:intergenic 20.0%
!! ATTGTACAGAATTAATATAC+AGG - chr8_2:66420717-66420736 None:intergenic 20.0%
!! AATGTAGTAAGAATACAAAT+TGG + chr8_2:66420843-66420862 Msa1263290:intron 20.0%
!! TTACTAAGTTAACAATTAAG+AGG - chr8_2:66421051-66421070 None:intergenic 20.0%
!! ACATCATATAACAATCTTAA+AGG + chr8_2:66421377-66421396 Msa1263290:intron 20.0%
!! CACAGATAAATATATTGTTA+GGG - chr8_2:66421640-66421659 None:intergenic 20.0%
!! CTAACAATATATTTATCTGT+GGG + chr8_2:66421639-66421658 Msa1263290:CDS 20.0%
!! TTATGTGGAAATATTTAGTT+TGG + chr8_2:66421999-66422018 Msa1263290:intron 20.0%
!!! AAATAAATATGCTGTTTCAA+AGG - chr8_2:66422037-66422056 None:intergenic 20.0%
!! TATTGACATTTGGTATTATT+AGG + chr8_2:66422653-66422672 Msa1263290:intron 20.0%
!! TGTTGTTCACAATATTTAAT+AGG + chr8_2:66422865-66422884 Msa1263290:three_prime_UTR 20.0%
! AGAATGGTTAGATAAACTTA+CGG - chr8_2:66419240-66419259 None:intergenic 25.0%
!! TTATTATGAAACGTGGTTTT+GGG - chr8_2:66419461-66419480 None:intergenic 25.0%
!! ATTATTATGAAACGTGGTTT+TGG - chr8_2:66419462-66419481 None:intergenic 25.0%
! AGAAGAATTATTATGAAACG+TGG - chr8_2:66419468-66419487 None:intergenic 25.0%
! AAACTAAACCTATGTAACAA+TGG - chr8_2:66419759-66419778 None:intergenic 25.0%
! CTCAAAACAATTTAAAGACA+TGG - chr8_2:66419949-66419968 None:intergenic 25.0%
! TAGTATAGCTTATATGGAAA+TGG + chr8_2:66420011-66420030 Msa1263290:intron 25.0%
! AAATATTTGGACATCTATTG+TGG - chr8_2:66420213-66420232 None:intergenic 25.0%
! ATAAATAAAACCAACTACCA+AGG - chr8_2:66420378-66420397 None:intergenic 25.0%
! AGGACAGATCATATATTAAT+AGG - chr8_2:66420414-66420433 None:intergenic 25.0%
! TTCTGTACAATTAATCATGA+AGG + chr8_2:66420726-66420745 Msa1263290:intron 25.0%
! TCTGTACAATTAATCATGAA+GGG + chr8_2:66420727-66420746 Msa1263290:intron 25.0%
!!! ATCCTTATTTTTAGTATGCT+TGG + chr8_2:66420781-66420800 Msa1263290:intron 25.0%
!!! TCCTTATTTTTAGTATGCTT+GGG + chr8_2:66420782-66420801 Msa1263290:intron 25.0%
!!! GTTTAATTTTGGGTTACTAA+AGG + chr8_2:66420896-66420915 Msa1263290:intron 25.0%
!! TGATTTTGTACATTTATCGT+GGG + chr8_2:66420957-66420976 Msa1263290:intron 25.0%
! TAGTAAGCAAACAATTATTG+AGG - chr8_2:66421120-66421139 None:intergenic 25.0%
! TATATGATGTTTACAAGACA+TGG - chr8_2:66421367-66421386 None:intergenic 25.0%
! CCACAGATAAATATATTGTT+AGG - chr8_2:66421641-66421660 None:intergenic 25.0%
! CCTAACAATATATTTATCTG+TGG + chr8_2:66421638-66421657 Msa1263290:CDS 25.0%
! TCTGTAACAGATGAATTAAA+CGG - chr8_2:66421834-66421853 None:intergenic 25.0%
! TAAATTAGTGTCTTGACAAA+TGG - chr8_2:66422360-66422379 None:intergenic 25.0%
! AAGACACTAATTTATATAGC+TGG + chr8_2:66422366-66422385 Msa1263290:intron 25.0%
!!! AACTAACACCAATTTTTTCA+AGG - chr8_2:66422555-66422574 None:intergenic 25.0%
! TCCATATCTATATTGACATT+TGG + chr8_2:66422643-66422662 Msa1263290:intron 25.0%
! ACCAAATGTCAATATAGATA+TGG - chr8_2:66422647-66422666 None:intergenic 25.0%
! AGAGATACAGATTGAAAATT+AGG - chr8_2:66422763-66422782 None:intergenic 25.0%
! AAGAAAAGAAAAAGAAAAGG+AGG - chr8_2:66422940-66422959 None:intergenic 25.0%
!! TCCTTTTCTTTTTCTTTTCT+TGG + chr8_2:66422939-66422958 Msa1263290:three_prime_UTR 25.0%
! ACCAAGAAAAGAAAAAGAAA+AGG - chr8_2:66422943-66422962 None:intergenic 25.0%
!!! ATAACGAATCTTGTTTTCTC+CGG - chr8_2:66419197-66419216 None:intergenic 30.0%
GTGATTGTTAACAGTAGAAT+TGG - chr8_2:66419404-66419423 None:intergenic 30.0%
!! TATTATGAAACGTGGTTTTG+GGG - chr8_2:66419460-66419479 None:intergenic 30.0%
TTCTTCTTCTTCTGTAGTAA+CGG + chr8_2:66419487-66419506 Msa1263290:intron 30.0%
GAAGTGAATAATGTCTTGAT+GGG - chr8_2:66419584-66419603 None:intergenic 30.0%
AGAAGTGAATAATGTCTTGA+TGG - chr8_2:66419585-66419604 None:intergenic 30.0%
AATAATATGCATACAGTTGC+AGG - chr8_2:66419663-66419682 None:intergenic 30.0%
! AATAGTCTCAAATGTGCTTT+TGG - chr8_2:66419898-66419917 None:intergenic 30.0%
! GACTATTTGTTAGAGCTTTA+AGG + chr8_2:66419911-66419930 Msa1263290:intron 30.0%
!! TGTTAGAGCTTTAAGGAAAA+AGG + chr8_2:66419918-66419937 Msa1263290:intron 30.0%
AAACTATCATGTAGAGCTTA+TGG - chr8_2:66419979-66419998 None:intergenic 30.0%
ACATGCTCATGGAATTAATT+AGG + chr8_2:66420318-66420337 Msa1263290:intron 30.0%
!!! CCTTATTTTTAGTATGCTTG+GGG + chr8_2:66420783-66420802 Msa1263290:intron 30.0%
! GTGATTTTGTACATTTATCG+TGG + chr8_2:66420956-66420975 Msa1263290:intron 30.0%
TTTGAACTAAAAACAGAGAG+AGG - chr8_2:66421405-66421424 None:intergenic 30.0%
!! CAATTACTTTTATCCTCTTC+AGG + chr8_2:66421471-66421490 Msa1263290:intron 30.0%
! TGTAGCATGAACATTTTGAA+CGG - chr8_2:66421588-66421607 None:intergenic 30.0%
!! AAATATGCTGTTTCAAAGGA+CGG - chr8_2:66422033-66422052 None:intergenic 30.0%
! CACATAAGGTTTTCTCTATT+GGG - chr8_2:66422092-66422111 None:intergenic 30.0%
! ACACATAAGGTTTTCTCTAT+TGG - chr8_2:66422093-66422112 None:intergenic 30.0%
! TGTATTTAAAGGCACACATA+AGG - chr8_2:66422106-66422125 None:intergenic 30.0%
TTAAAGAAAACCAGTTGAAC+TGG - chr8_2:66422178-66422197 None:intergenic 30.0%
!!! TCAACTGGTTTTCTTTAATC+AGG + chr8_2:66422180-66422199 Msa1263290:intron 30.0%
!!! CAACTGGTTTTCTTTAATCA+GGG + chr8_2:66422181-66422200 Msa1263290:intron 30.0%
TAATGATTTATTCGAGTGCA+AGG - chr8_2:66422317-66422336 None:intergenic 30.0%
!! AGGTCGACAAAATTTTTAGA+TGG - chr8_2:66422435-66422454 None:intergenic 30.0%
! ATCTAAAAATTTTGTCGACC+TGG + chr8_2:66422434-66422453 Msa1263290:intron 30.0%
TATAACATTGTGTACATACC+AGG - chr8_2:66422455-66422474 None:intergenic 30.0%
!!! AATTTTTTCAAGGAAAGGAG+GGG - chr8_2:66422545-66422564 None:intergenic 30.0%
!!! CAATTTTTTCAAGGAAAGGA+GGG - chr8_2:66422546-66422565 None:intergenic 30.0%
!!! ACACCAATTTTTTCAAGGAA+AGG - chr8_2:66422550-66422569 None:intergenic 30.0%
ATTCCAAGTTCCCTATAATT+TGG + chr8_2:66422591-66422610 Msa1263290:intron 30.0%
TAACCAAATTATAGGGAACT+TGG - chr8_2:66422597-66422616 None:intergenic 30.0%
TAGATATGGACAGAATTGTA+GGG - chr8_2:66422633-66422652 None:intergenic 30.0%
ATAGATATGGACAGAATTGT+AGG - chr8_2:66422634-66422653 None:intergenic 30.0%
GATACAGATTGAAAATTAGG+AGG - chr8_2:66422760-66422779 None:intergenic 30.0%
CAAAAAGCAAAACTATACCA+AGG - chr8_2:66422983-66423002 None:intergenic 30.0%
!! TTTTTGTCTGCATTGGTATA+TGG + chr8_2:66422997-66423016 Msa1263290:three_prime_UTR 30.0%
ATGGTTAGATAAACTTACGG+CGG - chr8_2:66419237-66419256 None:intergenic 35.0%
CACTGAAACAATAAAGGGAA+AGG - chr8_2:66419332-66419351 None:intergenic 35.0%
CACGTCACTGAAACAATAAA+GGG - chr8_2:66419337-66419356 None:intergenic 35.0%
ACACGTCACTGAAACAATAA+AGG - chr8_2:66419338-66419357 None:intergenic 35.0%
TATTGTTTCAGTGACGTGTT+TGG + chr8_2:66419339-66419358 Msa1263290:intron 35.0%
! TGTAGTAACGGAAAAACCAA+TGG + chr8_2:66419499-66419518 Msa1263290:intron 35.0%
!!! AGTTTTGTTCTGTGGTTACA+CGG + chr8_2:66419530-66419549 Msa1263290:CDS 35.0%
!! TAATGTCTTGATGGGTTCAT+TGG - chr8_2:66419576-66419595 None:intergenic 35.0%
CATTTGGTACTTCTGAATTG+AGG - chr8_2:66419608-66419627 None:intergenic 35.0%
!! CTCAATTCAGAAGTACCAAA+TGG + chr8_2:66419606-66419625 Msa1263290:CDS 35.0%
AAATTGAAGCTGCTCTGTTA+TGG + chr8_2:66419810-66419829 Msa1263290:intron 35.0%
AAGTCAATTCAAAATGACCC+TGG - chr8_2:66419857-66419876 None:intergenic 35.0%
ACAATTTCTGATTCTGAGTG+AGG + chr8_2:66420351-66420370 Msa1263290:intron 35.0%
GAAAACTCAAGTCTAGACAT+AGG - chr8_2:66420446-66420465 None:intergenic 35.0%
! ATCACTTGAGATGCCATTTA+TGG + chr8_2:66420500-66420519 Msa1263290:intron 35.0%
! TCACTTGAGATGCCATTTAT+GGG + chr8_2:66420501-66420520 Msa1263290:intron 35.0%
TCATGAATGTCAAACCATGA+AGG - chr8_2:66420614-66420633 None:intergenic 35.0%
CCCCAAGCATACTAAAAATA+AGG - chr8_2:66420786-66420805 None:intergenic 35.0%
AAATCACACTTACTGTCATG+TGG - chr8_2:66420943-66420962 None:intergenic 35.0%
TTCAACTATCCACTTGACAA+TGG + chr8_2:66420991-66421010 Msa1263290:intron 35.0%
TCAACTATCCACTTGACAAT+GGG + chr8_2:66420992-66421011 Msa1263290:intron 35.0%
CAGTTATAGTCAGTACAATG+TGG - chr8_2:66421146-66421165 None:intergenic 35.0%
!!! AGCACCAAAGTTTTGGTTTA+GGG - chr8_2:66421293-66421312 None:intergenic 35.0%
!!! AAGCACCAAAGTTTTGGTTT+AGG - chr8_2:66421294-66421313 None:intergenic 35.0%
!! ACCAAAACTTTGGTGCTTAT+TGG + chr8_2:66421296-66421315 Msa1263290:intron 35.0%
! ACCAATAAGCACCAAAGTTT+TGG - chr8_2:66421300-66421319 None:intergenic 35.0%
TGTTCATGCTACAATAGACA+AGG + chr8_2:66421595-66421614 Msa1263290:CDS 35.0%
! CATTTTTCTATTAAGGACGC+GGG - chr8_2:66421693-66421712 None:intergenic 35.0%
!! CCATTTTTCTATTAAGGACG+CGG - chr8_2:66421694-66421713 None:intergenic 35.0%
!! AAATGGTGACATTGTTTTGC+AGG + chr8_2:66421735-66421754 Msa1263290:intron 35.0%
CTGTTGTACCCTAAAACTTT+AGG + chr8_2:66421780-66421799 Msa1263290:CDS 35.0%
TTGTACCCTAAAACTTTAGG+TGG + chr8_2:66421783-66421802 Msa1263290:CDS 35.0%
AAATTACACCTGAAGCTAAG+CGG + chr8_2:66421856-66421875 Msa1263290:CDS 35.0%
CACATAAACATTTGATGCAG+AGG - chr8_2:66421986-66422005 None:intergenic 35.0%
CTCTGCATCAAATGTTTATG+TGG + chr8_2:66421984-66422003 Msa1263290:intron 35.0%
! TAAGGTTTTCTCTATTGGGT+CGG - chr8_2:66422088-66422107 None:intergenic 35.0%
TTGAACTGGAATGCTTTACT+TGG - chr8_2:66422164-66422183 None:intergenic 35.0%
! TGGTTTTCTTTAATCAGGGT+CGG + chr8_2:66422185-66422204 Msa1263290:intron 35.0%
TGTATACCGATGACAACAAT+AGG - chr8_2:66422211-66422230 None:intergenic 35.0%
TGATAAGTGTAATCGTTCCA+AGG - chr8_2:66422239-66422258 None:intergenic 35.0%
TTATACAGACACCCATACTA+TGG + chr8_2:66422470-66422489 Msa1263290:intron 35.0%
TGACAAAACAGTATTGTTCG+AGG + chr8_2:66422507-66422526 Msa1263290:CDS 35.0%
!!! CCAATTTTTTCAAGGAAAGG+AGG - chr8_2:66422547-66422566 None:intergenic 35.0%
CCTCCTTTCCTTGAAAAAAT+TGG + chr8_2:66422544-66422563 Msa1263290:CDS 35.0%
AGATATGGACAGAATTGTAG+GGG - chr8_2:66422632-66422651 None:intergenic 35.0%
TGGTATTATTAGGCTTATCC+TGG + chr8_2:66422663-66422682 Msa1263290:intron 35.0%
AAAATTAGGAGGAACTCTGT+AGG - chr8_2:66422749-66422768 None:intergenic 35.0%
GAAAATAGAGAAAGTCATCG+AGG - chr8_2:66422841-66422860 None:intergenic 35.0%
TTCTTGATCTCATGTCATTG+TGG + chr8_2:66422895-66422914 Msa1263290:three_prime_UTR 35.0%
TCTTGATCTCATGTCATTGT+GGG + chr8_2:66422896-66422915 Msa1263290:three_prime_UTR 35.0%
!!! GTTTTGCTTTTTGTCTGCAT+TGG + chr8_2:66422990-66423009 Msa1263290:three_prime_UTR 35.0%
TTAGATAAACTTACGGCGGA+GGG - chr8_2:66419233-66419252 None:intergenic 40.0%
! AGTAACGGAAAAACCAATGG+CGG + chr8_2:66419502-66419521 Msa1263290:intron 40.0%
AGCAGAAGGAAAAGACCATT+TGG - chr8_2:66419624-66419643 None:intergenic 40.0%
! TGTCTGTGCCATTGTTACAT+AGG + chr8_2:66419748-66419767 Msa1263290:intron 40.0%
! ACAGAGCAGCTTCAATTTTG+TGG - chr8_2:66419808-66419827 None:intergenic 40.0%
CTGGATAATATTCCCAGAAG+GGG - chr8_2:66419838-66419857 None:intergenic 40.0%
CCTGGATAATATTCCCAGAA+GGG - chr8_2:66419839-66419858 None:intergenic 40.0%
! CCTTCTGGGAATATTATCCA+GGG + chr8_2:66419837-66419856 Msa1263290:intron 40.0%
AGTCTAGACATAGGTGGAAT+AGG - chr8_2:66420437-66420456 None:intergenic 40.0%
AACTCAAGTCTAGACATAGG+TGG - chr8_2:66420443-66420462 None:intergenic 40.0%
! CTAGACTTGAGTTTTCTGCT+TGG + chr8_2:66420450-66420469 Msa1263290:intron 40.0%
GCTAATAGGTTGCCCATAAA+TGG - chr8_2:66420516-66420535 None:intergenic 40.0%
GAAGCTGATTGCAAGCTAAT+AGG - chr8_2:66420530-66420549 None:intergenic 40.0%
! ATGGTTCTGTAATGCCTTCA+TGG + chr8_2:66420597-66420616 Msa1263290:CDS 40.0%
CACAGCAGAAATGTGGAAAA+TGG - chr8_2:66420820-66420839 None:intergenic 40.0%
! CATTTTGCACAGCAGAAATG+TGG - chr8_2:66420827-66420846 None:intergenic 40.0%
! TTTGGGTTACTAAAGGAGAC+TGG + chr8_2:66420903-66420922 Msa1263290:intron 40.0%
TTGTACATTTATCGTGGGTG+TGG + chr8_2:66420962-66420981 Msa1263290:intron 40.0%
AACTCATTCCCATTGTCAAG+TGG - chr8_2:66421003-66421022 None:intergenic 40.0%
TTGCACCGTTCTCTTATAGA+TGG + chr8_2:66421261-66421280 Msa1263290:intron 40.0%
GTGCACCATCTATAAGAGAA+CGG - chr8_2:66421269-66421288 None:intergenic 40.0%
!!! CACCAAAGTTTTGGTTTAGG+GGG - chr8_2:66421291-66421310 None:intergenic 40.0%
!!! GCACCAAAGTTTTGGTTTAG+GGG - chr8_2:66421292-66421311 None:intergenic 40.0%
CACAAGTCAAATTGCTCAAC+AGG - chr8_2:66421451-66421470 None:intergenic 40.0%
TCAACATCATCATCCTGAAG+AGG - chr8_2:66421487-66421506 None:intergenic 40.0%
AGCAAACTATTCTCGTCGTT+TGG - chr8_2:66421560-66421579 None:intergenic 40.0%
TTTATCTGTGGGTTCAGTCA+AGG + chr8_2:66421650-66421669 Msa1263290:CDS 40.0%
CCGCGTCCTTAATAGAAAAA+TGG + chr8_2:66421691-66421710 Msa1263290:intron 40.0%
ATGAGCAACCTGCTGATAAA+TGG + chr8_2:66421718-66421737 Msa1263290:intron 40.0%
CAATGTCACCATTTATCAGC+AGG - chr8_2:66421729-66421748 None:intergenic 40.0%
TACCCTAAAACTTTAGGTGG+AGG + chr8_2:66421786-66421805 Msa1263290:CDS 40.0%
AATTACACCTGAAGCTAAGC+GGG + chr8_2:66421857-66421876 Msa1263290:CDS 40.0%
GCAGAGGCAATCATAGAAAA+TGG - chr8_2:66421970-66421989 None:intergenic 40.0%
! GTAAAGCATTCCAGTTCAAC+TGG + chr8_2:66422165-66422184 Msa1263290:intron 40.0%
CATCGGTATACAATTGTCCT+TGG + chr8_2:66422219-66422238 Msa1263290:intron 40.0%
TGCAAGGCTCATATCAAAAG+TGG - chr8_2:66422301-66422320 None:intergenic 40.0%
AAAACAGTATTGTTCGAGGC+AGG + chr8_2:66422511-66422530 Msa1263290:CDS 40.0%
! TGGTGTTAGTTGCGAGTTTA+AGG + chr8_2:66422564-66422583 Msa1263290:CDS 40.0%
CTCCTCGTTGTTTATTGAGT+GGG - chr8_2:66422694-66422713 None:intergenic 40.0%
! AGCTAAAGCATCTTGAGTCT+TGG + chr8_2:66422712-66422731 Msa1263290:CDS 40.0%
CTCTCAAAAACACTACTCCT+TGG + chr8_2:66422963-66422982 Msa1263290:three_prime_UTR 40.0%
!!! GAATCTTGTTTTCTCCGGCA+GGG - chr8_2:66419192-66419211 None:intergenic 45.0%
GTTAGATAAACTTACGGCGG+AGG - chr8_2:66419234-66419253 None:intergenic 45.0%
TGTAACAATGGCACAGACAC+CGG - chr8_2:66419747-66419766 None:intergenic 45.0%
! CCCTTCTGGGAATATTATCC+AGG + chr8_2:66419836-66419855 Msa1263290:intron 45.0%
CCCTGGATAATATTCCCAGA+AGG - chr8_2:66419840-66419859 None:intergenic 45.0%
CATACGATATGAAAGCCGCA+AGG - chr8_2:66420143-66420162 None:intergenic 45.0%
TGTGTGTAATGCGCTAAGGA+CGG - chr8_2:66420301-66420320 None:intergenic 45.0%
AGCATGTGTGTAATGCGCTA+AGG - chr8_2:66420305-66420324 None:intergenic 45.0%
CTAGACATAGGTGGAATAGG+AGG - chr8_2:66420434-66420453 None:intergenic 45.0%
ATTTATCGTGGGTGTGGACA+TGG + chr8_2:66420968-66420987 Msa1263290:intron 45.0%
CACCCCCTAAACCAAAACTT+TGG + chr8_2:66421286-66421305 Msa1263290:intron 45.0%
ATAGACAAGGAAGTAGCTGC+TGG + chr8_2:66421608-66421627 Msa1263290:CDS 45.0%
! TTTTGCAGGTGCCTTGACAT+TGG + chr8_2:66421749-66421768 Msa1263290:intron 45.0%
CAGAACACTAGCCAATGTCA+AGG - chr8_2:66421763-66421782 None:intergenic 45.0%
! CGCCTCCACCTAAAGTTTTA+GGG - chr8_2:66421791-66421810 None:intergenic 45.0%
ATAAGTACCCGCTTAGCTTC+AGG - chr8_2:66421867-66421886 None:intergenic 45.0%
! GTCGGTGTACTTTTGATGGA+TGG - chr8_2:66422070-66422089 None:intergenic 45.0%
! TTGGGTCGGTGTACTTTTGA+TGG - chr8_2:66422074-66422093 None:intergenic 45.0%
TTTATTGAGTGGGCAAGACC+AGG - chr8_2:66422684-66422703 None:intergenic 45.0%
TGCCCACTCAATAAACAACG+AGG + chr8_2:66422689-66422708 Msa1263290:CDS 45.0%
GCTCCTCGTTGTTTATTGAG+TGG - chr8_2:66422695-66422714 None:intergenic 45.0%
GATCTCATGTCATTGTGGGA+AGG + chr8_2:66422900-66422919 Msa1263290:three_prime_UTR 45.0%
!!! CGAATCTTGTTTTCTCCGGC+AGG - chr8_2:66419193-66419212 None:intergenic 50.0%
GATTCGTTATACGCTCCGTC+AGG + chr8_2:66419207-66419226 Msa1263290:five_prime_UTR 50.0%
! ACGTGTTTGGAATTCCGCCA+CGG + chr8_2:66419352-66419371 Msa1263290:five_prime_UTR 50.0%
ACAAAACTTCGAGCCGCCAT+TGG - chr8_2:66419518-66419537 None:intergenic 50.0%
!!! CGGCTCGAAGTTTTGTTCTG+TGG + chr8_2:66419522-66419541 Msa1263290:CDS 50.0%
GTTCTGTGGTTACACGGTCT+TGG + chr8_2:66419536-66419555 Msa1263290:CDS 50.0%
! TTACACGGTCTTGGTGACTC+TGG + chr8_2:66419545-66419564 Msa1263290:CDS 50.0%
!! GTCTTGATGGGTTCATTGGC+AGG - chr8_2:66419572-66419591 None:intergenic 50.0%
TGCATACAGTTGCAGGTGAC+CGG - chr8_2:66419656-66419675 None:intergenic 50.0%
TCTGTTATGGCTCCCCTTCT+GGG + chr8_2:66419823-66419842 Msa1263290:intron 50.0%
GTGTGTAATGCGCTAAGGAC+GGG - chr8_2:66420300-66420319 None:intergenic 50.0%
GCGCATTACACACATGCTCA+TGG + chr8_2:66420307-66420326 Msa1263290:intron 50.0%
CTGATTCTGAGTGAGGTCCT+TGG + chr8_2:66420358-66420377 Msa1263290:intron 50.0%
! TGAGTGAGGTCCTTGGTAGT+TGG + chr8_2:66420365-66420384 Msa1263290:intron 50.0%
GCTAGACTTACAGCAGTCAC+AGG - chr8_2:66420641-66420660 None:intergenic 50.0%
GGTTACTAAAGGAGACTGGC+AGG + chr8_2:66420907-66420926 Msa1263290:intron 50.0%
ATCTGTGGGTTCAGTCAAGG+AGG + chr8_2:66421653-66421672 Msa1263290:CDS 50.0%
! GCGCCTCCACCTAAAGTTTT+AGG - chr8_2:66421792-66421811 None:intergenic 50.0%
!! AGGCGCTGTTTTCAGTGGTT+GGG + chr8_2:66421806-66421825 Msa1263290:CDS 50.0%
GGTCGGCCTATTGTTGTCAT+CGG + chr8_2:66422202-66422221 Msa1263290:intron 50.0%
ACACCCATACTATGGTCCCA+TGG + chr8_2:66422478-66422497 Msa1263290:CDS 50.0%
CACCCATACTATGGTCCCAT+GGG + chr8_2:66422479-66422498 Msa1263290:CDS 50.0%
AGCCCATGGGACCATAGTAT+GGG - chr8_2:66422484-66422503 None:intergenic 50.0%
! TGTTTTGTCAGCCAGCCCAT+GGG - chr8_2:66422497-66422516 None:intergenic 50.0%
GAGAAAGTCATCGAGGTCAG+CGG - chr8_2:66422834-66422853 None:intergenic 50.0%
TCAACCACCTTAGACCCTGC+CGG + chr8_2:66419175-66419194 Msa1263290:five_prime_UTR 55.0%
! GTTTTCTCCGGCAGGGTCTA+AGG - chr8_2:66419185-66419204 None:intergenic 55.0%
! TTTGGAATTCCGCCACGGCT+TGG + chr8_2:66419357-66419376 Msa1263290:five_prime_UTR 55.0%
! GTTTGTTGCGTTCCAAGCCG+TGG - chr8_2:66419372-66419391 None:intergenic 55.0%
GATGCTGAGCTTCTCGTGTC+CGG + chr8_2:66419725-66419744 Msa1263290:intron 55.0%
CTCTGTTATGGCTCCCCTTC+TGG + chr8_2:66419822-66419841 Msa1263290:intron 55.0%
TAATGCGCTAAGGACGGGTC+TGG - chr8_2:66420295-66420314 None:intergenic 55.0%
!!! GAGGCGCTGTTTTCAGTGGT+TGG + chr8_2:66421805-66421824 Msa1263290:CDS 55.0%
CAGCCCATGGGACCATAGTA+TGG - chr8_2:66422485-66422504 None:intergenic 55.0%
CATACTATGGTCCCATGGGC+TGG + chr8_2:66422483-66422502 Msa1263290:CDS 55.0%
! CTGTTTTGTCAGCCAGCCCA+TGG - chr8_2:66422498-66422517 None:intergenic 55.0%
TTCTCCGGCAGGGTCTAAGG+TGG - chr8_2:66419182-66419201 None:intergenic 60.0%
TGTTGCGTTCCAAGCCGTGG+CGG - chr8_2:66419369-66419388 None:intergenic 60.0%
TCCTTCTGCTCCTCACGCTC+CGG + chr8_2:66419634-66419653 Msa1263290:CDS 60.0%
AAGGACGGGTCTGGTGGAAC+TGG - chr8_2:66420286-66420305 None:intergenic 60.0%
!!! GGTGGAGGCGCTGTTTTCAG+TGG + chr8_2:66421801-66421820 Msa1263290:CDS 60.0%
ACTTACGGCGGAGGGCCTGA+CGG - chr8_2:66419225-66419244 None:intergenic 65.0%
ACCGGAGCGTGAGGAGCAGA+AGG - chr8_2:66419638-66419657 None:intergenic 65.0%
TTGCAGGTGACCGGAGCGTG+AGG - chr8_2:66419647-66419666 None:intergenic 65.0%
TGCGCTAAGGACGGGTCTGG+TGG - chr8_2:66420292-66420311 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 66419132 66423035 66419132 ID=Msa1263290;Name=Msa1263290
chr8_2 mRNA 66419132 66423035 66419132 ID=Msa1263290-mRNA-1;Parent=Msa1263290;Name=Msa1263290-mRNA-1;_AED=0.09;_eAED=0.09;_QI=183|1|1|1|0.85|0.87|8|271|215
chr8_2 exon 66419132 66419238 66419132 ID=Msa1263290-mRNA-1:exon:21641;Parent=Msa1263290-mRNA-1
chr8_2 exon 66419350 66419411 66419350 ID=Msa1263290-mRNA-1:exon:21642;Parent=Msa1263290-mRNA-1
chr8_2 exon 66419504 66419668 66419504 ID=Msa1263290-mRNA-1:exon:21643;Parent=Msa1263290-mRNA-1
chr8_2 exon 66420597 66420649 66420597 ID=Msa1263290-mRNA-1:exon:21644;Parent=Msa1263290-mRNA-1
chr8_2 exon 66421551 66421674 66421551 ID=Msa1263290-mRNA-1:exon:21645;Parent=Msa1263290-mRNA-1
chr8_2 exon 66421757 66421878 66421757 ID=Msa1263290-mRNA-1:exon:21646;Parent=Msa1263290-mRNA-1
chr8_2 exon 66422478 66422585 66422478 ID=Msa1263290-mRNA-1:exon:21647;Parent=Msa1263290-mRNA-1
chr8_2 exon 66422675 66423035 66422675 ID=Msa1263290-mRNA-1:exon:21648;Parent=Msa1263290-mRNA-1
chr8_2 five_prime_UTR 66419132 66419238 66419132 ID=Msa1263290-mRNA-1:five_prime_utr;Parent=Msa1263290-mRNA-1
chr8_2 five_prime_UTR 66419350 66419411 66419350 ID=Msa1263290-mRNA-1:five_prime_utr;Parent=Msa1263290-mRNA-1
chr8_2 five_prime_UTR 66419504 66419517 66419504 ID=Msa1263290-mRNA-1:five_prime_utr;Parent=Msa1263290-mRNA-1
chr8_2 CDS 66419518 66419668 66419518 ID=Msa1263290-mRNA-1:cds;Parent=Msa1263290-mRNA-1
chr8_2 CDS 66420597 66420649 66420597 ID=Msa1263290-mRNA-1:cds;Parent=Msa1263290-mRNA-1
chr8_2 CDS 66421551 66421674 66421551 ID=Msa1263290-mRNA-1:cds;Parent=Msa1263290-mRNA-1
chr8_2 CDS 66421757 66421878 66421757 ID=Msa1263290-mRNA-1:cds;Parent=Msa1263290-mRNA-1
chr8_2 CDS 66422478 66422585 66422478 ID=Msa1263290-mRNA-1:cds;Parent=Msa1263290-mRNA-1
chr8_2 CDS 66422675 66422764 66422675 ID=Msa1263290-mRNA-1:cds;Parent=Msa1263290-mRNA-1
chr8_2 three_prime_UTR 66422765 66423035 66422765 ID=Msa1263290-mRNA-1:three_prime_utr;Parent=Msa1263290-mRNA-1
Gene Sequence

>Msa1263290

ATGGCGGCTCGAAGTTTTGTTCTGTGGTTACACGGTCTTGGTGACTCTGGTCCTGCCAATGAACCCATCAAGACATTATTCACTTCTCCTCAATTCAGAAGTACCAAATGGTCTTTTCCTTCTGCTCCTCACGCTCCGGTCACCTGCAACTATGGTTCTGTAATGCCTTCATGGTTTGACATTCATGAGATTCCTGTGACTGCTAATTCTCCAAACGACGAGAATAGTTTGCTTAAAGCCGTTCAAAATGTTCATGCTACAATAGACAAGGAAGTAGCTGCTGGCACAAACCCTAACAATATATTTATCTGTGGGTTCAGTCAAGGAGGTGCCTTGACATTGGCTAGTGTTCTGTTGTACCCTAAAACTTTAGGTGGAGGCGCTGTTTTCAGTGGTTGGGTTCCGTTTAATTCATCTGTTACAGAACAAATTACACCTGAAGCTAAGCGGACACCCATACTATGGTCCCATGGGCTGGCTGACAAAACAGTATTGTTCGAGGCAGGACAAGCAGCCCCTCCTTTCCTTGAAAAAATTGGTGTTAGTTGCGAGTTTAAGGCTTATCCTGGTCTTGCCCACTCAATAAACAACGAGGAGCTAAAGCATCTTGAGTCTTGGATCAAAGCACACCTACAGAGTTCCTCCTAA

Protein sequence

>Msa1263290

MAARSFVLWLHGLGDSGPANEPIKTLFTSPQFRSTKWSFPSAPHAPVTCNYGSVMPSWFDIHEIPVTANSPNDENSLLKAVQNVHATIDKEVAAGTNPNNIFICGFSQGGALTLASVLLYPKTLGGGAVFSGWVPFNSSVTEQITPEAKRTPILWSHGLADKTVLFEAGQAAPPFLEKIGVSCEFKAYPGLAHSINNEELKHLESWIKAHLQSSS*