Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046440 | XP_013447791.1 | 98.973 | 292 | 3 | 0 | 1 | 292 | 1 | 292 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046440 | sp|Q9ZW82|PRNL2_ARATH | 72.297 | 296 | 78 | 2 | 1 | 292 | 26 | 321 | 3.91e-157 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046440 | A0A072TVC4 | 98.973 | 292 | 3 | 0 | 1 | 292 | 1 | 292 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa1046440 | 0.800540 | 1.374146e-48 | -8.615850e-47 |
| Msa0041690 | Msa1046440 | 0.806723 | 7.160214e-50 | -8.615850e-47 |
| Msa0070070 | Msa1046440 | 0.807288 | 5.439216e-50 | -8.615850e-47 |
| Msa0106620 | Msa1046440 | 0.814535 | 1.466611e-51 | -8.615850e-47 |
| Msa0116790 | Msa1046440 | 0.812721 | 3.676399e-51 | -8.615850e-47 |
| Msa0662940 | Msa1046440 | 0.824186 | 9.251735e-54 | -8.615850e-47 |
| Msa0434570 | Msa1046440 | 0.801623 | 8.252304e-49 | -8.615850e-47 |
| Msa1003340 | Msa1046440 | 0.986953 | 1.525465e-168 | -8.615850e-47 |
| Msa1043330 | Msa1046440 | 0.836400 | 9.567666e-57 | -8.615850e-47 |
| Msa0312910 | Msa1046440 | 0.801345 | 9.409668e-49 | -8.615850e-47 |
| Msa0363810 | Msa1046440 | 0.803998 | 2.667337e-49 | -8.615850e-47 |
| Msa0486670 | Msa1046440 | 0.801460 | 8.910072e-49 | -8.615850e-47 |
| Msa0538800 | Msa1046440 | 0.800672 | 1.291590e-48 | -8.615850e-47 |
| Msa0542470 | Msa1046440 | 0.841947 | 3.488500e-58 | -8.615850e-47 |
| Msa0597770 | Msa1046440 | 0.814964 | 1.178073e-51 | -8.615850e-47 |
| Msa0598520 | Msa1046440 | 0.833285 | 5.820953e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046440 | MtrunA17_Chr7g0214271 | 98.973 | 292 | 3 | 0 | 1 | 292 | 1 | 292 | 0.0 | 600 |
| Msa1046440 | MtrunA17_Chr5g0445161 | 64.912 | 285 | 98 | 2 | 8 | 291 | 5 | 288 | 2.24e-143 | 405 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1046440 | AT2G43120.1 | 72.297 | 296 | 78 | 2 | 1 | 292 | 26 | 321 | 3.97e-158 | 444 |
| Msa1046440 | AT2G43120.2 | 72.297 | 296 | 78 | 2 | 1 | 292 | 77 | 372 | 9.90e-158 | 444 |
| Msa1046440 | AT3G59220.1 | 65.827 | 278 | 94 | 1 | 9 | 285 | 7 | 284 | 4.72e-139 | 394 |
| Msa1046440 | AT3G59260.1 | 64.591 | 257 | 90 | 1 | 37 | 292 | 15 | 271 | 3.40e-122 | 350 |
| Msa1046440 | AT1G50590.1 | 56.478 | 301 | 121 | 5 | 1 | 292 | 3 | 302 | 9.53e-120 | 346 |
| Msa1046440 | AT1G50590.2 | 53.947 | 228 | 96 | 4 | 74 | 292 | 1 | 228 | 2.57e-85 | 256 |
| Msa1046440 | AT1G50590.3 | 53.947 | 228 | 96 | 4 | 74 | 292 | 1 | 228 | 2.57e-85 | 256 |
Find 80 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGATGAGGCTAAATTAT+AGG | 0.245605 | 7_2:-6876825 | Msa1046440:CDS |
| CTTAGAAGTTCTTGATAGTT+TGG | 0.247944 | 7_2:+6877273 | None:intergenic |
| ACAGTTTAAATTATTTATAT+TGG | 0.248743 | 7_2:-6876592 | Msa1046440:three_prime_UTR |
| GTTTGATGAACTTGAGTTCC+TGG | 0.312165 | 7_2:+6877126 | None:intergenic |
| ATCTCCTTCACGTTGAGATT+TGG | 0.320492 | 7_2:+6878864 | None:intergenic |
| AGGAGCTGAAAAGATATCTT+TGG | 0.374089 | 7_2:-6876461 | Msa1046440:three_prime_UTR |
| AAAGGACCATATTGAGCAAT+AGG | 0.387063 | 7_2:+6876913 | None:intergenic |
| AATGAACCTATTGCTCAATA+TGG | 0.391955 | 7_2:-6876919 | Msa1046440:CDS |
| CTAATGTTGGATCACTTCTC+AGG | 0.398272 | 7_2:-6878607 | Msa1046440:intron |
| GACTTTGCAGTATCTCCTCC+TGG | 0.398797 | 7_2:-6878471 | Msa1046440:intron |
| AAACCTCTGTGTGGATGATC+AGG | 0.399050 | 7_2:+6878441 | None:intergenic |
| ACTATTGAAGACTATCAATA+TGG | 0.403357 | 7_2:-6876859 | Msa1046440:CDS |
| CAGAAGTGAGTTGAAGAACT+TGG | 0.405137 | 7_2:-6878638 | Msa1046440:CDS |
| ATAACTCTTCAAAGCCTTTG+AGG | 0.406915 | 7_2:-6876969 | Msa1046440:CDS |
| CCTTTGAGGTTTGTGCTCAT+TGG | 0.408779 | 7_2:-6876955 | Msa1046440:CDS |
| AAGGTGATGGACTTAGTGTT+TGG | 0.411445 | 7_2:-6876996 | Msa1046440:CDS |
| AGTGATAGCAGGAGAATCAA+TGG | 0.413770 | 7_2:-6877208 | Msa1046440:CDS |
| TCATTTGCATACATAATTGA+AGG | 0.440817 | 7_2:-6877084 | Msa1046440:CDS |
| CTTGAGTGAAAACAATGATA+TGG | 0.447295 | 7_2:+6877016 | None:intergenic |
| TTGAGGTTTGTGCTCATTGG+TGG | 0.448207 | 7_2:-6876952 | Msa1046440:CDS |
| AATAAGAACTGGTGATGTTC+AGG | 0.449423 | 7_2:-6878014 | Msa1046440:intron |
| CTTGATTTCACCATGATGCC+AGG | 0.451578 | 7_2:-6877144 | Msa1046440:CDS |
| TAGAAGATTTAAATTGCTGC+TGG | 0.458283 | 7_2:-6876399 | Msa1046440:three_prime_UTR |
| GAGAGAAAGTGGTCATGAAA+GGG | 0.462559 | 7_2:+6876313 | None:intergenic |
| AGCATAGCTATCAAGGTAGT+AGG | 0.463815 | 7_2:-6876481 | Msa1046440:three_prime_UTR |
| TGAGCAATAGGTTCATTCAA+TGG | 0.465412 | 7_2:+6876925 | None:intergenic |
| CCTTGTGGCCAGCAAAATCT+TGG | 0.466878 | 7_2:+6878041 | None:intergenic |
| TGTTATAAGCATAGCTATCA+AGG | 0.470214 | 7_2:-6876488 | Msa1046440:three_prime_UTR |
| ACAAAATTCATCACCAATTG+TGG | 0.472578 | 7_2:-6877043 | Msa1046440:CDS |
| TTTGTGCAGTGGATGACTGC+AGG | 0.479673 | 7_2:-6877886 | Msa1046440:intron |
| GGAGAGAAAGTGGTCATGAA+AGG | 0.492113 | 7_2:+6876312 | None:intergenic |
| CACAAGGGTACAATAAGAAC+TGG | 0.492820 | 7_2:-6878025 | Msa1046440:CDS |
| ATTTGTCTCTCAAGTCATCA+TGG | 0.494981 | 7_2:-6876360 | Msa1046440:three_prime_UTR |
| AAAACAATGGACTGCAATTG+TGG | 0.498536 | 7_2:-6877825 | Msa1046440:CDS |
| AAGTGATCCAACATTAGAAA+AGG | 0.502764 | 7_2:+6878613 | None:intergenic |
| AGAAACTTAGTACATGGAAA+AGG | 0.505568 | 7_2:+6876421 | None:intergenic |
| GACTATCAATATGGTAGGAA+TGG | 0.507862 | 7_2:-6876850 | Msa1046440:CDS |
| CTGGCATCATGGTGAAATCA+AGG | 0.508793 | 7_2:+6877145 | None:intergenic |
| GATTGTGTATTCATGACAAA+AGG | 0.515755 | 7_2:+6876895 | None:intergenic |
| GTTGGTGTTCTTGTGTAGAC+AGG | 0.520089 | 7_2:+6877174 | None:intergenic |
| AGAGAAAGTGGTCATGAAAG+GGG | 0.527622 | 7_2:+6876314 | None:intergenic |
| GTGATAGCAGGAGAATCAAT+GGG | 0.534226 | 7_2:-6877207 | Msa1046440:CDS |
| CTAATTATTAGGAGAGAAAG+TGG | 0.534254 | 7_2:+6876302 | None:intergenic |
| CTATGCTTATAACATTGAAA+AGG | 0.536014 | 7_2:+6876497 | None:intergenic |
| ATGATATGGTGAGCCACAAT+TGG | 0.536674 | 7_2:+6877030 | None:intergenic |
| CAGTTCTTATTGTACCCTTG+TGG | 0.546116 | 7_2:+6878026 | None:intergenic |
| GCAAATGAATTCCATGACTC+AGG | 0.546190 | 7_2:+6877099 | None:intergenic |
| ATCAAACTATTCCTGAGTCA+TGG | 0.547660 | 7_2:-6877110 | Msa1046440:CDS |
| TCTTCTAGAAACTTAGTACA+TGG | 0.551120 | 7_2:+6876415 | None:intergenic |
| AACTTGTTAAGAACAAACCT+GGG | 0.556777 | 7_2:+6878892 | None:intergenic |
| GCTGTTGTTAGAAGAGGCAT+TGG | 0.557157 | 7_2:-6878838 | Msa1046440:CDS |
| CTAAGTGAGAACATACCATC+AGG | 0.564908 | 7_2:-6877255 | Msa1046440:CDS |
| GAGAAAGTGGTCATGAAAGG+GGG | 0.567915 | 7_2:+6876315 | None:intergenic |
| AAACTTGTTAAGAACAAACC+TGG | 0.569350 | 7_2:+6878891 | None:intergenic |
| TTGTGCAGTGGATGACTGCA+GGG | 0.569971 | 7_2:-6877885 | Msa1046440:intron |
| AAATCTCAACGTGAAGGAGA+TGG | 0.573455 | 7_2:-6878862 | Msa1046440:CDS |
| TTAGCCAAATCTCAACGTGA+AGG | 0.576381 | 7_2:-6878868 | Msa1046440:CDS |
| TTGAAGACTATCAATATGGT+AGG | 0.576598 | 7_2:-6876855 | Msa1046440:CDS |
| GTTGAAGTGAGAGTGATAGC+AGG | 0.579971 | 7_2:-6877219 | Msa1046440:CDS |
| GATGGTGCTGTTGTTAGAAG+AGG | 0.580369 | 7_2:-6878844 | Msa1046440:CDS |
| TTGTTAGAAGAGGCATTGGA+AGG | 0.587330 | 7_2:-6878834 | Msa1046440:intron |
| GCATACATAATTGAAGGAGA+AGG | 0.591101 | 7_2:-6877078 | Msa1046440:CDS |
| GGATGATCAGGAAATCCTCC+AGG | 0.591695 | 7_2:+6878453 | None:intergenic |
| GCAGTGGATGACTGCAGGGA+GGG | 0.592783 | 7_2:-6877881 | Msa1046440:intron |
| AACTTGAGTTCCTGGCATCA+TGG | 0.595280 | 7_2:+6877134 | None:intergenic |
| TTTGTCTCTCAAGTCATCAT+GGG | 0.597393 | 7_2:-6876359 | Msa1046440:three_prime_UTR |
| CAGTGGATGACTGCAGGGAG+GGG | 0.597592 | 7_2:-6877880 | Msa1046440:CDS |
| CATGGTGAAATCAAGGAACA+TGG | 0.604059 | 7_2:+6877152 | None:intergenic |
| CCAATGAGCACAAACCTCAA+AGG | 0.613431 | 7_2:+6876955 | None:intergenic |
| GATACATACCTCTAGCATGT+AGG | 0.619014 | 7_2:+6878304 | None:intergenic |
| TGCAGTGGATGACTGCAGGG+AGG | 0.648962 | 7_2:-6877882 | Msa1046440:intron |
| TTTGCAGTATCTCCTCCTGG+AGG | 0.671519 | 7_2:-6878468 | Msa1046440:intron |
| GTGAAATCAAGGAACATGGT+TGG | 0.672435 | 7_2:+6877156 | None:intergenic |
| GACAGTCACCTACATGCTAG+AGG | 0.675614 | 7_2:-6878312 | Msa1046440:intron |
| ACTTGTTAAGAACAAACCTG+GGG | 0.678566 | 7_2:+6878893 | None:intergenic |
| ACAAATATAAAACCTCTGTG+TGG | 0.680198 | 7_2:+6878432 | None:intergenic |
| AATGTTTGAACAAATTTACG+CGG | 0.681725 | 7_2:+6876708 | None:intergenic |
| TGATCAGGAAATCCTCCAGG+AGG | 0.721413 | 7_2:+6878456 | None:intergenic |
| TTTCCTGATCATCCACACAG+AGG | 0.724938 | 7_2:-6878444 | Msa1046440:intron |
| CTTGTTAAGAACAAACCTGG+GGG | 0.779406 | 7_2:+6878894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTAATTATTTTAT+TGG | - | chr7_2:6877578-6877597 | Msa1046440:intron | 0.0% |
| !! | AATATATGTATAAAATATTG+AGG | + | chr7_2:6876954-6876973 | None:intergenic | 10.0% |
| !! | AATTATAATCTATAATCTAT+AGG | - | chr7_2:6877895-6877914 | Msa1046440:intron | 10.0% |
| !! | ATTATAATCTATAATCTATA+GGG | - | chr7_2:6877896-6877915 | Msa1046440:intron | 10.0% |
| !! | ACAGTTTAAATTATTTATAT+TGG | - | chr7_2:6878747-6878766 | Msa1046440:intron | 10.0% |
| !! | TATGAAATAAAAAAATAACA+AGG | - | chr7_2:6878804-6878823 | Msa1046440:intron | 10.0% |
| !! | TATAGTTAACAAAAGAAAAA+TGG | + | chr7_2:6876554-6876573 | None:intergenic | 15.0% |
| !! | TATGTATAAAATATTGAGGA+AGG | + | chr7_2:6876950-6876969 | None:intergenic | 20.0% |
| !! | CTACATATAATTAAATGTGT+CGG | + | chr7_2:6877105-6877124 | None:intergenic | 20.0% |
| !!! | ATTTAATTTACCTTCAACAT+TGG | - | chr7_2:6877210-6877229 | Msa1046440:CDS | 20.0% |
| !!! | TTATGATCAATTAGTGTTTT+TGG | + | chr7_2:6877361-6877380 | None:intergenic | 20.0% |
| !! | AAAAACATAAGAAGCTTAAA+TGG | - | chr7_2:6877391-6877410 | Msa1046440:intron | 20.0% |
| !! | AGATTTAGACTTCTTAAATA+AGG | + | chr7_2:6877718-6877737 | None:intergenic | 20.0% |
| !! | AATGCAATATATATAGTGTA+AGG | - | chr7_2:6877758-6877777 | Msa1046440:intron | 20.0% |
| !! | TAATCTATAGGGATAAAAAT+TGG | - | chr7_2:6877907-6877926 | Msa1046440:intron | 20.0% |
| !! | GTAAAAATAATGACCTTAAT+CGG | + | chr7_2:6878000-6878019 | None:intergenic | 20.0% |
| ! | CATCACATAAATCATATCAA+AGG | + | chr7_2:6876674-6876693 | None:intergenic | 25.0% |
| ! | TACCAAAATCTATATAGTGT+CGG | - | chr7_2:6877148-6877167 | Msa1046440:CDS | 25.0% |
| ! | CAATAATATACCAATGTTGA+AGG | + | chr7_2:6877223-6877242 | None:intergenic | 25.0% |
| ! | TAAGAAGCTTAAATGGAATT+TGG | - | chr7_2:6877398-6877417 | Msa1046440:intron | 25.0% |
| !! | TTGGTGCAAAGTATATTTTA+CGG | - | chr7_2:6877597-6877616 | Msa1046440:intron | 25.0% |
| !! | TTTTGTGAGTGAAAAAAATG+TGG | + | chr7_2:6877682-6877701 | None:intergenic | 25.0% |
| !!! | TCTTTTTCAATTCTTCTCTA+GGG | - | chr7_2:6877859-6877878 | Msa1046440:CDS | 25.0% |
| !!! | CTTTGTTTAACTTTTGATTC+AGG | - | chr7_2:6878037-6878056 | Msa1046440:CDS | 25.0% |
| ! | TCATTTGCATACATAATTGA+AGG | - | chr7_2:6878255-6878274 | Msa1046440:intron | 25.0% |
| ! | ACTATTGAAGACTATCAATA+TGG | - | chr7_2:6878480-6878499 | Msa1046440:intron | 25.0% |
| ! | AATGTTTGAACAAATTTACG+CGG | + | chr7_2:6878634-6878653 | None:intergenic | 25.0% |
| ! | CTATGCTTATAACATTGAAA+AGG | + | chr7_2:6878845-6878864 | None:intergenic | 25.0% |
| !!! | TCTGTATCTTTTTCAATGTC+AGG | - | chr7_2:6876402-6876421 | Msa1046440:three_prime_UTR | 30.0% |
| !! | AACTTGTTAAGAACAAACCT+GGG | + | chr7_2:6876450-6876469 | None:intergenic | 30.0% |
| !! | AAACTTGTTAAGAACAAACC+TGG | + | chr7_2:6876451-6876470 | None:intergenic | 30.0% |
| AAGTGATCCAACATTAGAAA+AGG | + | chr7_2:6876729-6876748 | None:intergenic | 30.0% | |
| ! | TATGTTTGAGATTGAGAGTA+AGG | - | chr7_2:6876779-6876798 | Msa1046440:three_prime_UTR | 30.0% |
| !!! | TAAGGCTTTGTTTGTTTTGT+TGG | - | chr7_2:6876797-6876816 | Msa1046440:exon | 30.0% |
| !!! | TTGTTTGTTTTGTTGGCTTT+TGG | - | chr7_2:6876804-6876823 | Msa1046440:exon | 30.0% |
| ACAAATATAAAACCTCTGTG+TGG | + | chr7_2:6876910-6876929 | None:intergenic | 30.0% | |
| ! | AGTTTTACATTGCTTGATTC+AGG | - | chr7_2:6877262-6877281 | Msa1046440:CDS | 30.0% |
| ! | GTTTTACATTGCTTGATTCA+GGG | - | chr7_2:6877263-6877282 | Msa1046440:CDS | 30.0% |
| !!! | TATTTGTCTTTTTTGTGCAG+TGG | - | chr7_2:6877442-6877461 | Msa1046440:intron | 30.0% |
| TGAAAAAAATGTGGTTGGAA+GGG | + | chr7_2:6877673-6877692 | None:intergenic | 30.0% | |
| !!! | GTCTTTTTCAATTCTTCTCT+AGG | - | chr7_2:6877858-6877877 | Msa1046440:CDS | 30.0% |
| !!! | ACAAAGTTTTGAACCGATTA+AGG | - | chr7_2:6877984-6878003 | Msa1046440:intron | 30.0% |
| ! | CTTAGAAGTTCTTGATAGTT+TGG | + | chr7_2:6878069-6878088 | None:intergenic | 30.0% |
| ACAAAATTCATCACCAATTG+TGG | - | chr7_2:6878296-6878315 | Msa1046440:intron | 30.0% | |
| CTTGAGTGAAAACAATGATA+TGG | + | chr7_2:6878326-6878345 | None:intergenic | 30.0% | |
| ! | CATATCATTGTTTTCACTCA+AGG | - | chr7_2:6878324-6878343 | Msa1046440:intron | 30.0% |
| AATGAACCTATTGCTCAATA+TGG | - | chr7_2:6878420-6878439 | Msa1046440:intron | 30.0% | |
| GATTGTGTATTCATGACAAA+AGG | + | chr7_2:6878447-6878466 | None:intergenic | 30.0% | |
| TTGAAGACTATCAATATGGT+AGG | - | chr7_2:6878484-6878503 | Msa1046440:intron | 30.0% | |
| TTGAGATGAGGCTAAATTAT+AGG | - | chr7_2:6878514-6878533 | Msa1046440:intron | 30.0% | |
| TGTTATAAGCATAGCTATCA+AGG | - | chr7_2:6878851-6878870 | Msa1046440:CDS | 30.0% | |
| AGAAACTTAGTACATGGAAA+AGG | + | chr7_2:6878921-6878940 | None:intergenic | 30.0% | |
| ! | TCTTCTAGAAACTTAGTACA+TGG | + | chr7_2:6878927-6878946 | None:intergenic | 30.0% |
| TAGAAGATTTAAATTGCTGC+TGG | - | chr7_2:6878940-6878959 | Msa1046440:exon | 30.0% | |
| ! | ACTTGTTAAGAACAAACCTG+GGG | + | chr7_2:6876449-6876468 | None:intergenic | 35.0% |
| ! | CTTGGATCCTTTTCTAATGT+TGG | - | chr7_2:6876719-6876738 | Msa1046440:three_prime_UTR | 35.0% |
| ! | GATTTGCATATCTCTTTTGC+AGG | - | chr7_2:6876998-6877017 | Msa1046440:CDS | 35.0% |
| AACATCGGAAACACAAAAGA+TGG | + | chr7_2:6877072-6877091 | None:intergenic | 35.0% | |
| GTCGGTATCATGTTAAACAT+CGG | + | chr7_2:6877087-6877106 | None:intergenic | 35.0% | |
| ! | CACCGACACTATATAGATTT+TGG | + | chr7_2:6877153-6877172 | None:intergenic | 35.0% |
| ! | ATAACTCACCAAGATTTTGC+TGG | - | chr7_2:6877290-6877309 | Msa1046440:intron | 35.0% |
| ! | AATAAGAACTGGTGATGTTC+AGG | - | chr7_2:6877325-6877344 | Msa1046440:intron | 35.0% |
| !! | AAAACAATGGACTGCAATTG+TGG | - | chr7_2:6877514-6877533 | Msa1046440:intron | 35.0% |
| TACGGATAATTAATCTCCGT+TGG | - | chr7_2:6877615-6877634 | Msa1046440:intron | 35.0% | |
| !! | CTGGCTAATCAATTTTAGCA+CGG | - | chr7_2:6877643-6877662 | Msa1046440:intron | 35.0% |
| GAAAAAAATGTGGTTGGAAG+GGG | + | chr7_2:6877672-6877691 | None:intergenic | 35.0% | |
| GTGAAAAAAATGTGGTTGGA+AGG | + | chr7_2:6877674-6877693 | None:intergenic | 35.0% | |
| GTGAGTGAAAAAAATGTGGT+TGG | + | chr7_2:6877678-6877697 | None:intergenic | 35.0% | |
| ! | ATCGGTTCAAAACTTTGTCA+TGG | + | chr7_2:6877982-6878001 | None:intergenic | 35.0% |
| ATACCATCAGGAGAAAAAGA+TGG | - | chr7_2:6878096-6878115 | Msa1046440:intron | 35.0% | |
| ATCAAACTATTCCTGAGTCA+TGG | - | chr7_2:6878229-6878248 | Msa1046440:intron | 35.0% | |
| GCATACATAATTGAAGGAGA+AGG | - | chr7_2:6878261-6878280 | Msa1046440:intron | 35.0% | |
| !!! | ATTGAAGGAGAAGGTGTTTT+TGG | - | chr7_2:6878270-6878289 | Msa1046440:intron | 35.0% |
| ! | ATTGTTTTCACTCAAGGTGA+TGG | - | chr7_2:6878330-6878349 | Msa1046440:intron | 35.0% |
| ATAACTCTTCAAAGCCTTTG+AGG | - | chr7_2:6878370-6878389 | Msa1046440:intron | 35.0% | |
| TGAGCAATAGGTTCATTCAA+TGG | + | chr7_2:6878417-6878436 | None:intergenic | 35.0% | |
| AAAGGACCATATTGAGCAAT+AGG | + | chr7_2:6878429-6878448 | None:intergenic | 35.0% | |
| GACTATCAATATGGTAGGAA+TGG | - | chr7_2:6878489-6878508 | Msa1046440:intron | 35.0% | |
| AGGAGCTGAAAAGATATCTT+TGG | - | chr7_2:6878878-6878897 | Msa1046440:CDS | 35.0% | |
| ATTTGTCTCTCAAGTCATCA+TGG | - | chr7_2:6878979-6878998 | Msa1046440:five_prime_UTR | 35.0% | |
| TTTGTCTCTCAAGTCATCAT+GGG | - | chr7_2:6878980-6878999 | Msa1046440:five_prime_UTR | 35.0% | |
| CTTGTTAAGAACAAACCTGG+GGG | + | chr7_2:6876448-6876467 | None:intergenic | 40.0% | |
| TTAGCCAAATCTCAACGTGA+AGG | - | chr7_2:6876471-6876490 | Msa1046440:three_prime_UTR | 40.0% | |
| ATCTCCTTCACGTTGAGATT+TGG | + | chr7_2:6876478-6876497 | None:intergenic | 40.0% | |
| AAATCTCAACGTGAAGGAGA+TGG | - | chr7_2:6876477-6876496 | Msa1046440:three_prime_UTR | 40.0% | |
| !! | TTGTTAGAAGAGGCATTGGA+AGG | - | chr7_2:6876505-6876524 | Msa1046440:three_prime_UTR | 40.0% |
| ! | CAGAAGTGAGTTGAAGAACT+TGG | - | chr7_2:6876701-6876720 | Msa1046440:three_prime_UTR | 40.0% |
| CTAATGTTGGATCACTTCTC+AGG | - | chr7_2:6876732-6876751 | Msa1046440:three_prime_UTR | 40.0% | |
| GATACATACCTCTAGCATGT+AGG | + | chr7_2:6877038-6877057 | None:intergenic | 40.0% | |
| TTACATTGCTTGATTCAGGG+AGG | - | chr7_2:6877266-6877285 | Msa1046440:CDS | 40.0% | |
| CAGTTCTTATTGTACCCTTG+TGG | + | chr7_2:6877316-6877335 | None:intergenic | 40.0% | |
| ! | CACAAGGGTACAATAAGAAC+TGG | - | chr7_2:6877314-6877333 | Msa1046440:intron | 40.0% |
| !!! | CCATTGTTTTTTGCTTCTGC+AGG | + | chr7_2:6877504-6877523 | None:intergenic | 40.0% |
| CCTGCAGAAGCAAAAAACAA+TGG | - | chr7_2:6877501-6877520 | Msa1046440:intron | 40.0% | |
| TTAATCTCCGTTGGAGAATC+TGG | - | chr7_2:6877624-6877643 | Msa1046440:intron | 40.0% | |
| ! | TGATTAGCCAGATTCTCCAA+CGG | + | chr7_2:6877634-6877653 | None:intergenic | 40.0% |
| CTAAGTGAGAACATACCATC+AGG | - | chr7_2:6878084-6878103 | Msa1046440:intron | 40.0% | |
| ! | ACACCATCTTTTTCTCCTGA+TGG | + | chr7_2:6878102-6878121 | None:intergenic | 40.0% |
| AGTGATAGCAGGAGAATCAA+TGG | - | chr7_2:6878131-6878150 | Msa1046440:intron | 40.0% | |
| GTGATAGCAGGAGAATCAAT+GGG | - | chr7_2:6878132-6878151 | Msa1046440:intron | 40.0% | |
| GTGAAATCAAGGAACATGGT+TGG | + | chr7_2:6878186-6878205 | None:intergenic | 40.0% | |
| CATGGTGAAATCAAGGAACA+TGG | + | chr7_2:6878190-6878209 | None:intergenic | 40.0% | |
| GTTTGATGAACTTGAGTTCC+TGG | + | chr7_2:6878216-6878235 | None:intergenic | 40.0% | |
| GCAAATGAATTCCATGACTC+AGG | + | chr7_2:6878243-6878262 | None:intergenic | 40.0% | |
| ATGATATGGTGAGCCACAAT+TGG | + | chr7_2:6878312-6878331 | None:intergenic | 40.0% | |
| !! | AAGGTGATGGACTTAGTGTT+TGG | - | chr7_2:6878343-6878362 | Msa1046440:intron | 40.0% |
| !!! | GTAGGAATGGTTTTGAGATG+AGG | - | chr7_2:6878502-6878521 | Msa1046440:intron | 40.0% |
| AGCATAGCTATCAAGGTAGT+AGG | - | chr7_2:6878858-6878877 | Msa1046440:CDS | 40.0% | |
| !! | GATGGTGCTGTTGTTAGAAG+AGG | - | chr7_2:6876495-6876514 | Msa1046440:three_prime_UTR | 45.0% |
| ! | GCTGTTGTTAGAAGAGGCAT+TGG | - | chr7_2:6876501-6876520 | Msa1046440:three_prime_UTR | 45.0% |
| TTTCCTGATCATCCACACAG+AGG | - | chr7_2:6876895-6876914 | Msa1046440:CDS | 45.0% | |
| AAACCTCTGTGTGGATGATC+AGG | + | chr7_2:6876901-6876920 | None:intergenic | 45.0% | |
| ! | CAAGATTTTGCTGGCCACAA+GGG | - | chr7_2:6877299-6877318 | Msa1046440:intron | 45.0% |
| ! | AGAACTGGTGATGTTCAGGT+AGG | - | chr7_2:6877329-6877348 | Msa1046440:intron | 45.0% |
| GTTGAAGTGAGAGTGATAGC+AGG | - | chr7_2:6878120-6878139 | Msa1046440:intron | 45.0% | |
| ! | GTTGGTGTTCTTGTGTAGAC+AGG | + | chr7_2:6878168-6878187 | None:intergenic | 45.0% |
| CTGGCATCATGGTGAAATCA+AGG | + | chr7_2:6878197-6878216 | None:intergenic | 45.0% | |
| CTTGATTTCACCATGATGCC+AGG | - | chr7_2:6878195-6878214 | Msa1046440:intron | 45.0% | |
| AACTTGAGTTCCTGGCATCA+TGG | + | chr7_2:6878208-6878227 | None:intergenic | 45.0% | |
| CCAATGAGCACAAACCTCAA+AGG | + | chr7_2:6878387-6878406 | None:intergenic | 45.0% | |
| !! | CCTTTGAGGTTTGTGCTCAT+TGG | - | chr7_2:6878384-6878403 | Msa1046440:intron | 45.0% |
| TTGAGGTTTGTGCTCATTGG+TGG | - | chr7_2:6878387-6878406 | Msa1046440:intron | 45.0% | |
| TGGTCATGAAAGGGGGAAAA+AGG | + | chr7_2:6879020-6879039 | None:intergenic | 45.0% | |
| GAGAAAGTGGTCATGAAAGG+GGG | + | chr7_2:6879027-6879046 | None:intergenic | 45.0% | |
| !! | CTATTATAATATAAAATATA+TGG | - | chr7_2:6877954-6877973 | Msa1046440:intron | 5.0% |
| !! | GTTCTGCTTTTAACACCCCC+AGG | - | chr7_2:6876430-6876449 | Msa1046440:three_prime_UTR | 50.0% |
| GACTTTGCAGTATCTCCTCC+TGG | - | chr7_2:6876868-6876887 | Msa1046440:CDS | 50.0% | |
| TTTGCAGTATCTCCTCCTGG+AGG | - | chr7_2:6876871-6876890 | Msa1046440:CDS | 50.0% | |
| TGATCAGGAAATCCTCCAGG+AGG | + | chr7_2:6876886-6876905 | None:intergenic | 50.0% | |
| GGATGATCAGGAAATCCTCC+AGG | + | chr7_2:6876889-6876908 | None:intergenic | 50.0% | |
| GACAGTCACCTACATGCTAG+AGG | - | chr7_2:6877027-6877046 | Msa1046440:CDS | 50.0% | |
| CCTTGTGGCCAGCAAAATCT+TGG | + | chr7_2:6877301-6877320 | None:intergenic | 50.0% | |
| ! | CCAAGATTTTGCTGGCCACA+AGG | - | chr7_2:6877298-6877317 | Msa1046440:intron | 50.0% |
| TTTGTGCAGTGGATGACTGC+AGG | - | chr7_2:6877453-6877472 | Msa1046440:intron | 50.0% | |
| TTGTGCAGTGGATGACTGCA+GGG | - | chr7_2:6877454-6877473 | Msa1046440:intron | 50.0% | |
| TGCAGTGGATGACTGCAGGG+AGG | - | chr7_2:6877457-6877476 | Msa1046440:intron | 60.0% | |
| GCAGTGGATGACTGCAGGGA+GGG | - | chr7_2:6877458-6877477 | Msa1046440:intron | 60.0% | |
| CAGTGGATGACTGCAGGGAG+GGG | - | chr7_2:6877459-6877478 | Msa1046440:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 6876315 | 6879046 | 6876315 | ID=Msa1046440;Name=Msa1046440 |
| chr7_2 | mRNA | 6876315 | 6879046 | 6876315 | ID=Msa1046440-mRNA-1;Parent=Msa1046440;Name=Msa1046440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=102|1|1|1|1|1|7|501|292 |
| chr7_2 | exon | 6876315 | 6877302 | 6876315 | ID=Msa1046440-mRNA-1:exon:1632;Parent=Msa1046440-mRNA-1 |
| chr7_2 | exon | 6877799 | 6877899 | 6877799 | ID=Msa1046440-mRNA-1:exon:1631;Parent=Msa1046440-mRNA-1 |
| chr7_2 | exon | 6878015 | 6878077 | 6878015 | ID=Msa1046440-mRNA-1:exon:1630;Parent=Msa1046440-mRNA-1 |
| chr7_2 | exon | 6878313 | 6878341 | 6878313 | ID=Msa1046440-mRNA-1:exon:1629;Parent=Msa1046440-mRNA-1 |
| chr7_2 | exon | 6878445 | 6878483 | 6878445 | ID=Msa1046440-mRNA-1:exon:1628;Parent=Msa1046440-mRNA-1 |
| chr7_2 | exon | 6878608 | 6878657 | 6878608 | ID=Msa1046440-mRNA-1:exon:1627;Parent=Msa1046440-mRNA-1 |
| chr7_2 | exon | 6878835 | 6879046 | 6878835 | ID=Msa1046440-mRNA-1:exon:1626;Parent=Msa1046440-mRNA-1 |
| chr7_2 | five_prime_UTR | 6878945 | 6879046 | 6878945 | ID=Msa1046440-mRNA-1:five_prime_utr;Parent=Msa1046440-mRNA-1 |
| chr7_2 | CDS | 6878835 | 6878944 | 6878835 | ID=Msa1046440-mRNA-1:cds;Parent=Msa1046440-mRNA-1 |
| chr7_2 | CDS | 6878608 | 6878657 | 6878608 | ID=Msa1046440-mRNA-1:cds;Parent=Msa1046440-mRNA-1 |
| chr7_2 | CDS | 6878445 | 6878483 | 6878445 | ID=Msa1046440-mRNA-1:cds;Parent=Msa1046440-mRNA-1 |
| chr7_2 | CDS | 6878313 | 6878341 | 6878313 | ID=Msa1046440-mRNA-1:cds;Parent=Msa1046440-mRNA-1 |
| chr7_2 | CDS | 6878015 | 6878077 | 6878015 | ID=Msa1046440-mRNA-1:cds;Parent=Msa1046440-mRNA-1 |
| chr7_2 | CDS | 6877799 | 6877899 | 6877799 | ID=Msa1046440-mRNA-1:cds;Parent=Msa1046440-mRNA-1 |
| chr7_2 | CDS | 6876816 | 6877302 | 6876816 | ID=Msa1046440-mRNA-1:cds;Parent=Msa1046440-mRNA-1 |
| chr7_2 | three_prime_UTR | 6876315 | 6876815 | 6876315 | ID=Msa1046440-mRNA-1:three_prime_utr;Parent=Msa1046440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
