AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041690 MtrunA17_Chr1g0207291 97.972 641 4 1 1 641 1 632 0.0 1295
Msa0041690 MtrunA17_Chr5g0393731 84.555 641 84 4 1 641 1 626 0.0 1134
Msa0041690 MtrunA17_Chr8g0334591 64.434 627 209 3 12 636 7 621 0.0 872
Msa0041690 MtrunA17_Chr7g0244951 65.147 614 198 3 25 637 21 619 0.0 870
Msa0041690 MtrunA17_Chr2g0296671 61.760 625 221 5 11 634 6 613 0.0 799
Msa0041690 MtrunA17_Chr3g0133721 88.060 67 8 0 1 67 1 67 1.03e-25 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041690 AT2G14740.2 82.955 616 94 2 26 641 24 628 0.0 1085
Msa0041690 AT2G14740.1 82.955 616 94 2 26 641 24 628 0.0 1085
Msa0041690 AT2G14720.1 82.305 616 98 2 26 641 24 628 0.0 1077
Msa0041690 AT2G14720.2 82.305 616 98 2 26 641 24 628 0.0 1077
Msa0041690 AT3G52850.1 69.775 622 175 4 9 629 3 612 0.0 922
Msa0041690 AT2G30290.2 67.657 606 184 2 23 628 20 613 0.0 903
Msa0041690 AT2G30290.1 67.657 606 184 2 23 628 20 613 0.0 903
Msa0041690 AT4G20110.1 60.968 620 221 6 13 629 10 611 0.0 812
Msa0041690 AT4G20110.2 60.806 620 225 7 13 629 10 614 0.0 807
Msa0041690 AT1G30900.1 59.395 628 235 6 3 630 4 611 0.0 801
Msa0041690 AT2G34940.1 56.190 630 252 8 5 630 2 611 0.0 744

Find 193 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCGAAGTTCTTCTTCTA+TGG 0.133612 1_1:+72114537 Msa0041690:CDS
TTGTCTACAAATACAGAATT+AGG 0.178416 1_1:+72120025 Msa0041690:CDS
GGCTTAGTTCTGGCCGCTTC+AGG 0.182959 1_1:+72119994 Msa0041690:CDS
AGTCTGCTTGGGCTGCATTT+TGG 0.190559 1_1:+72119959 Msa0041690:CDS
CTGAAATCTTGCTCGGGATC+TGG 0.207921 1_1:-72116092 None:intergenic
TTCTGAAACCAACCCATTTC+AGG 0.217715 1_1:+72114474 Msa0041690:five_prime_UTR
GCTCTCATCGAAAAGAATTT+TGG 0.223991 1_1:+72115762 Msa0041690:CDS
CAGAAGAAGCTCCAGCCTTC+TGG 0.229340 1_1:-72115638 None:intergenic
TGTAAAGAGTTTGATGAGTC+TGG 0.245741 1_1:+72114760 Msa0041690:CDS
AGCACCAGGCTTAGATTTAA+AGG 0.247886 1_1:-72114788 None:intergenic
GAGTGTCCTGCAGGCTTTAA+AGG 0.260477 1_1:+72118303 Msa0041690:CDS
CATACATGGATTCTGAAATA+AGG 0.266551 1_1:+72120337 Msa0041690:CDS
AACCATATCTCCACCACTTA+TGG 0.277116 1_1:-72115802 None:intergenic
CAGAAAATGCATGTCCATTC+CGG 0.281927 1_1:-72118131 None:intergenic
GTGGGGATCTTCTGTATATC+AGG 0.289133 1_1:+72119805 Msa0041690:CDS
TTGTTTATCTTACACCTTCC+AGG 0.290685 1_1:-72118087 None:intergenic
TAATATAGTGGGGTGTAAAC+TGG 0.302686 1_1:-72115992 None:intergenic
TCCTGTACTAAAAGCAAAAT+AGG 0.304226 1_1:-72120717 None:intergenic
GATAGATGTCATGTATTATT+CGG 0.308921 1_1:+72120581 Msa0041690:three_prime_UTR
CATTGTAGTCGGCTTAGTTC+TGG 0.309333 1_1:+72119984 Msa0041690:CDS
GTTATGAAAGCTATTTGTTC+TGG 0.309679 1_1:+72116743 Msa0041690:CDS
AACAAAACAAAAGGAAATTA+TGG 0.310587 1_1:-72114349 None:intergenic
AGAATTCTGAAAAGGGAAAA+AGG 0.316929 1_1:-72120503 None:intergenic
TACTTGAAAGGACTGAATTT+AGG 0.320321 1_1:+72120620 Msa0041690:three_prime_UTR
GTATTCTTGCAGCTACATTC+AGG 0.330559 1_1:-72119756 None:intergenic
TCATACTCCACACGATCATC+TGG 0.339398 1_1:-72115861 None:intergenic
GCTTAGTTCTGGCCGCTTCA+GGG 0.346264 1_1:+72119995 Msa0041690:CDS
TGAAATCTTGCTCGGGATCT+GGG 0.377710 1_1:-72116091 None:intergenic
GGTTGAGTTCCTTTGTTTGT+TGG 0.384114 1_1:-72114315 None:intergenic
ACGAATTTCGCCATTGATGA+AGG 0.392022 1_1:-72114595 None:intergenic
CAATACGGTGGTAGCATGGC+TGG 0.398045 1_1:+72114703 Msa0041690:CDS
AGAAAATGCATGTCCATTCC+GGG 0.415168 1_1:-72118130 None:intergenic
ATCGTTGACGCCTTCATCAA+TGG 0.415698 1_1:+72114585 Msa0041690:CDS
GACAACTAGAGTAGGCAATA+TGG 0.417108 1_1:-72116599 None:intergenic
CACATCTTTCCCGTCATAAC+CGG 0.417877 1_1:-72116117 None:intergenic
AGAAGAAGCTCCAGCCTTCT+GGG 0.420583 1_1:-72115637 None:intergenic
TGGTTAACGTAAATCTTGAT+TGG 0.421095 1_1:+72115820 Msa0041690:CDS
TTACACCCCACTATATTACT+TGG 0.422794 1_1:+72115997 Msa0041690:CDS
TTCAGAAATTGATTCTGTTA+CGG 0.428967 1_1:-72114458 None:intergenic
CATGATTTACAACTTCTGAT+TGG 0.429502 1_1:-72120392 None:intergenic
TCAAATTAGGTGCCCAATGA+AGG 0.430681 1_1:+72116229 Msa0041690:CDS
ATACATGGATTCTGAAATAA+GGG 0.434533 1_1:+72120338 Msa0041690:CDS
CAATGCTCAGAATTCTGAAA+AGG 0.435386 1_1:-72120511 None:intergenic
TGTCTACAAATACAGAATTA+GGG 0.436258 1_1:+72120026 Msa0041690:CDS
TACCCTCATGAACAGGATAA+TGG 0.437177 1_1:+72118267 Msa0041690:intron
GACAGTACCAAGTAATATAG+TGG 0.441864 1_1:-72116004 None:intergenic
ACGATCGAGCAAAACAATAG+TGG 0.444164 1_1:-72114815 None:intergenic
AGCCATAAGTGGTGGAGATA+TGG 0.445018 1_1:+72115800 Msa0041690:CDS
GATAGTGCGATTGGTAACTT+TGG 0.451575 1_1:+72114673 Msa0041690:CDS
GTGTGGAATGCCCAGAAGGC+TGG 0.460343 1_1:+72115627 Msa0041690:CDS
ATTCGAAGTTCTTCTTCTAT+GGG 0.467731 1_1:+72114538 Msa0041690:CDS
TGCAGGTAAAACTGCCAGTC+GGG 0.471405 1_1:+72119927 Msa0041690:intron
GGGAAGGAGGAAAGTCTGCT+TGG 0.476259 1_1:+72119947 Msa0041690:CDS
TATGTTCCTTTGATACTATC+CGG 0.476682 1_1:-72114649 None:intergenic
GCAGATGATCCATCCTCCTC+AGG 0.476864 1_1:-72115708 None:intergenic
AACTTCTGATTGGCTGTCCA+AGG 0.478629 1_1:-72120382 None:intergenic
GTATCCAAAGGATAATCAAA+AGG 0.478802 1_1:+72114735 Msa0041690:CDS
ATAGTGCGATTGGTAACTTT+GGG 0.479211 1_1:+72114674 Msa0041690:CDS
TCCCACACAACTCCGCCAAC+AGG 0.479567 1_1:-72120451 None:intergenic
AATGTAGCTGCAAGAATACC+TGG 0.480193 1_1:+72119760 Msa0041690:CDS
AGTTAAATGCGATATGTTGA+TGG 0.480940 1_1:+72115914 Msa0041690:CDS
TGTGAATGCCCCTTGGTAGA+TGG 0.482376 1_1:+72117099 Msa0041690:CDS
TATTCTTGCAGCTACATTCA+GGG 0.482646 1_1:-72119755 None:intergenic
TTCGATTTCCTGAAATGGGT+TGG 0.483180 1_1:-72114482 None:intergenic
ATGTGGTTATTGAAAATTTG+AGG 0.485254 1_1:+72116135 Msa0041690:CDS
GTAAAGAGTTTGATGAGTCT+GGG 0.488702 1_1:+72114761 Msa0041690:CDS
GGAAGGAGGAAAGTCTGCTT+GGG 0.490069 1_1:+72119948 Msa0041690:CDS
ATTGATTCTGTTACGGAGAA+GGG 0.490926 1_1:-72114451 None:intergenic
AATTGATTCTGTTACGGAGA+AGG 0.498413 1_1:-72114452 None:intergenic
TGAGAAAGGAACAAAACAAA+AGG 0.500339 1_1:-72114358 None:intergenic
ACCGGTGCTGAAATCTTGCT+CGG 0.501464 1_1:-72116099 None:intergenic
ACAATAGTGGGAAGAGCACC+AGG 0.501923 1_1:-72114802 None:intergenic
TTCTGAAATAAGGGCCATCA+TGG 0.502019 1_1:+72120347 Msa0041690:CDS
TTCATCAATGGCGAAATTCG+TGG 0.503001 1_1:+72114597 Msa0041690:CDS
CAGCTTGAGGGTCACTTCAC+CGG 0.503515 1_1:+72114630 Msa0041690:CDS
TATGATTATTCAATATCTGC+AGG 0.504784 1_1:+72116360 Msa0041690:CDS
ATTTCCTTTAAATCTAAGCC+TGG 0.504811 1_1:+72114784 Msa0041690:CDS
TATTACTTGGTACTGTCCTC+AGG 0.506859 1_1:+72116010 Msa0041690:CDS
AATGCTCAGAATTCTGAAAA+GGG 0.506899 1_1:-72120510 None:intergenic
ATCCTCCTCAGGTGTGTCCA+TGG 0.509434 1_1:-72115697 None:intergenic
AGCTTCTTCTGTTCTTGTTG+CGG 0.510707 1_1:+72115650 Msa0041690:CDS
CCCGAGCAAGATTTCAGCAC+CGG 0.512142 1_1:+72116098 Msa0041690:CDS
TGGAGAACAACGGTGGTTGT+TGG 0.512435 1_1:+72116928 Msa0041690:CDS
CTTAGTTCTGGCCGCTTCAG+GGG 0.515721 1_1:+72119996 Msa0041690:CDS
ATTTCAGCACCGGTTATGAC+GGG 0.515820 1_1:+72116108 Msa0041690:CDS
AGATAAACAATGGAGGTTGT+TGG 0.516909 1_1:+72118100 Msa0041690:CDS
GGTGGAGACAAATGAATGCT+TGG 0.517791 1_1:+72116908 Msa0041690:CDS
GGGTTTACAGCTAGTGGACC+TGG 0.520969 1_1:+72118069 Msa0041690:intron
GCCTGTTGGCGGAGTTGTGT+GGG 0.521933 1_1:+72120450 Msa0041690:three_prime_UTR
GAGGTTGTTGGCATGAAGCC+CGG 0.523945 1_1:+72118112 Msa0041690:CDS
GATTTCAGCACCGGTTATGA+CGG 0.525212 1_1:+72116107 Msa0041690:CDS
TCTGCAGGAAAATTGGAGAA+AGG 0.526045 1_1:+72116716 Msa0041690:intron
TATCCAAAGGATAATCAAAA+GGG 0.531673 1_1:+72114736 Msa0041690:CDS
AGCTATAACTGCAGTTGCAG+TGG 0.533286 1_1:+72119786 Msa0041690:CDS
AATATAGTGGGGTGTAAACT+GGG 0.538132 1_1:-72115991 None:intergenic
AGACTTTCCTCCTTCCCGAC+TGG 0.538256 1_1:-72119941 None:intergenic
GTTAGATGCGAGTGTCCTGC+AGG 0.541935 1_1:+72118294 Msa0041690:CDS
GAAAGAAGAGCAAGATGCCC+AGG 0.543075 1_1:+72116449 Msa0041690:CDS
CATGGCACAGTATATGCCCT+TGG 0.543318 1_1:+72120365 Msa0041690:CDS
GGAACATACGATAGTGCGAT+TGG 0.544143 1_1:+72114664 Msa0041690:CDS
CCACTGCTCAAACAAACAGC+TGG 0.546385 1_1:-72116785 None:intergenic
ACAGTACCAAGTAATATAGT+GGG 0.548081 1_1:-72116003 None:intergenic
GCTATAACTGCAGTTGCAGT+GGG 0.548449 1_1:+72119787 Msa0041690:CDS
GGGCATATACTGTGCCATGA+TGG 0.550471 1_1:-72120361 None:intergenic
ACCTCAATACGGTGGTAGCA+TGG 0.553317 1_1:+72114699 Msa0041690:CDS
TAGCAAGTTGTATACTTGAA+AGG 0.553378 1_1:+72120608 Msa0041690:three_prime_UTR
GGTGGAGAAGAACAGCTTGA+GGG 0.554991 1_1:+72114618 Msa0041690:CDS
CTTTCTTTACCAACAAACAA+AGG 0.555192 1_1:+72114306 Msa0041690:five_prime_UTR
AGCTAACATAACTGCATGCA+AGG 0.558133 1_1:+72116962 Msa0041690:CDS
GCCATGCTACCACCGTATTG+AGG 0.559538 1_1:-72114700 None:intergenic
CGATCGAGCAAAACAATAGT+GGG 0.563565 1_1:-72114814 None:intergenic
GTTGGTAAAGAAAGTAACAG+AGG 0.564771 1_1:-72114297 None:intergenic
TATGTTGATGGAATTTGTGA+AGG 0.566441 1_1:+72115926 Msa0041690:CDS
CCGTCACCTTTAAAGCCTGC+AGG 0.567601 1_1:-72118309 None:intergenic
GAAACATGTCAGCCTGTTGG+CGG 0.567833 1_1:+72120439 Msa0041690:three_prime_UTR
GTAGATGGTGTGCAGTTCAA+AGG 0.568441 1_1:+72117114 Msa0041690:CDS
CCGGTGCTGAAATCTTGCTC+GGG 0.568944 1_1:-72116098 None:intergenic
AGCCTGTTGGCGGAGTTGTG+TGG 0.569403 1_1:+72120449 Msa0041690:three_prime_UTR
CTCATGAACAGGATAATGGA+GGG 0.573028 1_1:+72118271 Msa0041690:intron
CACAGACATTGATGAATGCA+AGG 0.576190 1_1:+72119713 Msa0041690:intron
TCCACACGATCATCTGGGTG+AGG 0.580364 1_1:-72115855 None:intergenic
GAAATCTTGCTCGGGATCTG+GGG 0.581809 1_1:-72116090 None:intergenic
TCCACACTCATCATTGCTGT+TGG 0.585345 1_1:-72115892 None:intergenic
ATGGACACACCTGAGGAGGA+TGG 0.586336 1_1:+72115699 Msa0041690:CDS
AACTTTGGGATACCTCAATA+CGG 0.590006 1_1:+72114688 Msa0041690:CDS
GCGGCACAAATATTAGAGAA+AGG 0.590141 1_1:+72115960 Msa0041690:CDS
AATACGGTGGTAGCATGGCT+GGG 0.590400 1_1:+72114704 Msa0041690:CDS
ACTTCTGATTGGCTGTCCAA+GGG 0.591399 1_1:-72120381 None:intergenic
TGTTGGCATGAAGCCCGGAA+TGG 0.592207 1_1:+72118117 Msa0041690:CDS
CATACTCCACACGATCATCT+GGG 0.593682 1_1:-72115860 None:intergenic
CGTAAATCTTGATTGGAGAG+AGG 0.593987 1_1:+72115827 Msa0041690:CDS
CTGGGGCACAGTATCTTCCA+TGG 0.594050 1_1:-72116073 None:intergenic
GGAAGGTGTAAGATAAACAA+TGG 0.594628 1_1:+72118090 Msa0041690:CDS
GATGGTTATACGACTTGTGA+AGG 0.594672 1_1:+72117138 Msa0041690:CDS
GGTAAAACTGCCAGTCGGGA+AGG 0.595610 1_1:+72119931 Msa0041690:intron
AACCATGGACACACCTGAGG+AGG 0.596696 1_1:+72115695 Msa0041690:CDS
CCTGCAGGCTTTAAAGGTGA+CGG 0.597581 1_1:+72118309 Msa0041690:CDS
TGGGAAATGAGACCTGGTTG+TGG 0.599749 1_1:+72120469 Msa0041690:three_prime_UTR
CTGCAGGTAAAACTGCCAGT+CGG 0.600111 1_1:+72119926 Msa0041690:intron
GGTGTGCAGTTCAAAGGAGA+TGG 0.604361 1_1:+72117120 Msa0041690:CDS
ACTCACTTATGCATGCATCA+TGG 0.604511 1_1:-72119830 None:intergenic
GAACAACGGTGGTTGTTGGA+AGG 0.605351 1_1:+72116932 Msa0041690:CDS
AACATAGTCCCACCACACCC+AGG 0.607740 1_1:-72116198 None:intergenic
GTAAAGAAAGTAACAGAGGA+AGG 0.609335 1_1:-72114293 None:intergenic
ATGTAGCTGCAAGAATACCT+GGG 0.609762 1_1:+72119761 Msa0041690:CDS
GATGCTGTCATTGAATCACT+TGG 0.610137 1_1:+72116278 Msa0041690:CDS
AAATTAAAGAAAGCCATAAG+TGG 0.610630 1_1:+72115789 Msa0041690:CDS
AACTGCACACCATCTACCAA+GGG 0.610753 1_1:-72117108 None:intergenic
TTAAAGAAAGCCATAAGTGG+TGG 0.611621 1_1:+72115792 Msa0041690:CDS
ACTGCAGTTATAGCTTCCCC+AGG 0.613660 1_1:-72119778 None:intergenic
GCGAGTATGTGAATGCCCCT+TGG 0.614068 1_1:+72117092 Msa0041690:CDS
TGGGGATCTTCTGTATATCA+GGG 0.614878 1_1:+72119806 Msa0041690:CDS
CCCTCACCCAGATGATCGTG+TGG 0.615906 1_1:+72115854 Msa0041690:CDS
CGACTGTTGACAACTAGAGT+AGG 0.615928 1_1:-72116607 None:intergenic
GAACTGCACACCATCTACCA+AGG 0.616672 1_1:-72117109 None:intergenic
CGGTTATGACGGGAAAGATG+TGG 0.621138 1_1:+72116118 Msa0041690:CDS
TGGGAACGTTGTGTATCCAA+AGG 0.624009 1_1:+72114723 Msa0041690:CDS
AAATAGGTTACAATCATGAG+TGG 0.626639 1_1:-72120701 None:intergenic
TAATTCTGTATTTGTAGACA+AGG 0.626747 1_1:-72120023 None:intergenic
TGGTGGAGAAGAACAGCTTG+AGG 0.627384 1_1:+72114617 Msa0041690:CDS
ACTTCACCGGATAGTATCAA+AGG 0.627824 1_1:+72114643 Msa0041690:CDS
GACAAGGTATGCCCCTGAAG+CGG 0.629612 1_1:-72120007 None:intergenic
AAAACTGCCAGTCGGGAAGG+AGG 0.630243 1_1:+72119934 Msa0041690:CDS
CCAGCTGTTTGTTTGAGCAG+TGG 0.630846 1_1:+72116785 Msa0041690:CDS
CCTCATGAACAGGATAATGG+AGG 0.632470 1_1:+72118270 Msa0041690:intron
AGAGAACATAACAATACCAT+CGG 0.633990 1_1:+72115740 Msa0041690:CDS
GGCATTCACATACTCGCCCA+CGG 0.638497 1_1:-72117086 None:intergenic
GTACAAGGTATGCCACAACC+AGG 0.644728 1_1:-72120481 None:intergenic
ACATAGTCCCACCACACCCA+GGG 0.646860 1_1:-72116197 None:intergenic
GAAGGTGTGGAATGCCCAGA+AGG 0.648445 1_1:+72115623 Msa0041690:CDS
GTCAACAGTCGACAATATCG+AGG 0.651235 1_1:+72116619 Msa0041690:CDS
CCACACGATCATCTGGGTGA+GGG 0.651924 1_1:-72115854 None:intergenic
TTACAGCTAGTGGACCTGGA+AGG 0.655369 1_1:+72118073 Msa0041690:intron
TTTCTCAGGATACTTTCCGT+GGG 0.661548 1_1:+72117070 Msa0041690:intron
TCATGAACAGGATAATGGAG+GGG 0.665637 1_1:+72118272 Msa0041690:intron
AGGTGTAAGATAAACAATGG+AGG 0.665718 1_1:+72118093 Msa0041690:CDS
TTACTTAACGTGAATGCCTG+AGG 0.666657 1_1:-72116026 None:intergenic
ATCGTGTGGAGTATGAGCTG+TGG 0.668780 1_1:+72115868 Msa0041690:CDS
GCACAAATATTAGAGAAAGG+TGG 0.668896 1_1:+72115963 Msa0041690:CDS
ATCAATGGCGAAATTCGTGG+TGG 0.674911 1_1:+72114600 Msa0041690:CDS
AGTGAAACATGTCAGCCTGT+TGG 0.675698 1_1:+72120436 Msa0041690:three_prime_UTR
AATAACCATGGACACACCTG+AGG 0.685427 1_1:+72115692 Msa0041690:CDS
ACCAACAGCAATGATGAGTG+TGG 0.691750 1_1:+72115891 Msa0041690:CDS
AATGAATGCTTGGAGAACAA+CGG 0.697524 1_1:+72116918 Msa0041690:CDS
CAGTACCAAGTAATATAGTG+GGG 0.700032 1_1:-72116002 None:intergenic
AAGTCTCAGTGCATTAACCA+TGG 0.700775 1_1:+72116056 Msa0041690:CDS
GTTGTGTGGGAAATGAGACC+TGG 0.701958 1_1:+72120463 Msa0041690:three_prime_UTR
TGTAGCTGCAAGAATACCTG+GGG 0.705484 1_1:+72119762 Msa0041690:CDS
TAGGTTGGGAAGGGATCACG+AGG 0.715187 1_1:+72116568 Msa0041690:intron
CTATAACTGCAGTTGCAGTG+GGG 0.736333 1_1:+72119788 Msa0041690:CDS
ACTGCACACCATCTACCAAG+GGG 0.748266 1_1:-72117107 None:intergenic
TTTGGGATACCTCAATACGG+TGG 0.761140 1_1:+72114691 Msa0041690:CDS
GAATGCTTGGAGAACAACGG+TGG 0.785107 1_1:+72116921 Msa0041690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTGAAAAATAAAAATG+AGG - chr1_1:72117350-72117369 None:intergenic 10.0%
!!! TTACAAGTTTTTTTTTTTTA+AGG + chr1_1:72117468-72117487 Msa0041690:intron 10.0%
!!! TATGAAGTTATATATTTTAA+CGG - chr1_1:72117613-72117632 None:intergenic 10.0%
!!! CTTGTTTTTAATATTTTTTT+TGG + chr1_1:72118474-72118493 Msa0041690:intron 10.0%
!!! TTTTAAGTCTTTTTATTATA+AGG - chr1_1:72119633-72119652 None:intergenic 10.0%
!! AATATAAAAGGAAAAAAAGT+GGG - chr1_1:72114410-72114429 None:intergenic 15.0%
!! TAATATAAAAGGAAAAAAAG+TGG - chr1_1:72114411-72114430 None:intergenic 15.0%
!! TTGATATTAAAAAGATTGAA+AGG + chr1_1:72116385-72116404 Msa0041690:CDS 15.0%
!!! TTTAACAAAATAGTTTTTGT+AGG + chr1_1:72116549-72116568 Msa0041690:intron 15.0%
!! TTACTTGTAATTGAAAAAAA+TGG + chr1_1:72117232-72117251 Msa0041690:intron 15.0%
!! CAAAAATAAAATGAAACTTT+AGG - chr1_1:72117513-72117532 None:intergenic 15.0%
!! ATAGTGATTTAAAAATGAAA+TGG - chr1_1:72117552-72117571 None:intergenic 15.0%
!!! ATAATTTATAAGTTTTCAAC+AGG - chr1_1:72117948-72117967 None:intergenic 15.0%
!! TATAATTTCAGTAAAAATAC+AGG + chr1_1:72117979-72117998 Msa0041690:intron 15.0%
!! TTTATAGCAAAATTCATTAA+TGG + chr1_1:72118602-72118621 Msa0041690:intron 15.0%
!! TTATAGCAAAATTCATTAAT+GGG + chr1_1:72118603-72118622 Msa0041690:intron 15.0%
!! AACAAAACAAAAGGAAATTA+TGG - chr1_1:72114352-72114371 None:intergenic 20.0%
!!! GCAGCTTTTTTTAATATAAA+AGG - chr1_1:72114422-72114441 None:intergenic 20.0%
!!! TTTTTTATTCTTCTGCTAAT+GGG - chr1_1:72114510-72114529 None:intergenic 20.0%
!!! ATTTATGAGTTTTTTTTAGC+TGG + chr1_1:72114900-72114919 Msa0041690:intron 20.0%
!! AAACAATTATAACAATCAAC+TGG - chr1_1:72114957-72114976 None:intergenic 20.0%
!!! TTATTTTGCTATAGAAATAG+AGG + chr1_1:72115296-72115315 Msa0041690:intron 20.0%
!!! TGTTGATAATCAAATACTTA+TGG + chr1_1:72115449-72115468 Msa0041690:intron 20.0%
!! AATACTTATGGAGTTAAATT+TGG + chr1_1:72115461-72115480 Msa0041690:intron 20.0%
!! ATACTTATGGAGTTAAATTT+GGG + chr1_1:72115462-72115481 Msa0041690:intron 20.0%
!! TGAAGAAAAATTAATAACCA+TGG + chr1_1:72115680-72115699 Msa0041690:CDS 20.0%
!!! ATGTTACTGATTTTCAAATT+AGG + chr1_1:72116216-72116235 Msa0041690:CDS 20.0%
!! ATCTTGTACAATCAATTAAA+CGG - chr1_1:72116507-72116526 None:intergenic 20.0%
!!! TTTTCTGATAGATATTGATA+TGG + chr1_1:72116658-72116677 Msa0041690:intron 20.0%
!! TAAACATGAATATAGAAAAC+TGG - chr1_1:72117037-72117056 None:intergenic 20.0%
!!! ATATATGTGAATATTTTCTC+AGG + chr1_1:72117056-72117075 Msa0041690:intron 20.0%
!! TTTGAAAAATAAAAATGAGG+AGG - chr1_1:72117347-72117366 None:intergenic 20.0%
!!! TTAAGGTTAAATTGCTTTTT+AGG + chr1_1:72117485-72117504 Msa0041690:intron 20.0%
!! TATAACTTCATAATAAGTTG+AGG + chr1_1:72117621-72117640 Msa0041690:intron 20.0%
!! AAAAGGTTAAATTACTCTAT+AGG - chr1_1:72118007-72118026 None:intergenic 20.0%
!! TGAACACACATTATTAAAAA+AGG - chr1_1:72118024-72118043 None:intergenic 20.0%
!!! CTTAGTATTTGAAATTTTGT+TGG + chr1_1:72118200-72118219 Msa0041690:intron 20.0%
!! AAATATTAAAAACAAGATCC+AGG - chr1_1:72118470-72118489 None:intergenic 20.0%
!! TAAAATATTAGTAGAATCCA+TGG + chr1_1:72118563-72118582 Msa0041690:intron 20.0%
!!! TTTTCAATTTGACAAGTTTT+TGG + chr1_1:72118864-72118883 Msa0041690:intron 20.0%
!! AAGTAAAAAAGAAGTAATGT+TGG + chr1_1:72119200-72119219 Msa0041690:intron 20.0%
!! AGTAAAAAAGAAGTAATGTT+GGG + chr1_1:72119201-72119220 Msa0041690:intron 20.0%
!!! TTTTTGCTTATATTTGTGTT+CGG + chr1_1:72119406-72119425 Msa0041690:intron 20.0%
!!! CTTTTTTCATATTTCCTTTT+TGG + chr1_1:72119899-72119918 Msa0041690:intron 20.0%
!! ATCTTGTATAAACATAGAAA+GGG - chr1_1:72120122-72120141 None:intergenic 20.0%
!! AATCTTGTATAAACATAGAA+AGG - chr1_1:72120123-72120142 None:intergenic 20.0%
!! CTATGTTTATACAAGATTTA+TGG + chr1_1:72120125-72120144 Msa0041690:intron 20.0%
!!! TGATTTTTAAACAAAAAAGC+TGG - chr1_1:72120179-72120198 None:intergenic 20.0%
!! TTTACTTCATAGTATTTGAT+TGG + chr1_1:72120277-72120296 Msa0041690:intron 20.0%
!!! GAAATTATGGTTGTTTTTCT+CGG - chr1_1:72114339-72114358 None:intergenic 25.0%
!! ATTTTTACGATGTTTGAGAA+AGG - chr1_1:72114375-72114394 None:intergenic 25.0%
!! TTCAGAAATTGATTCTGTTA+CGG - chr1_1:72114461-72114480 None:intergenic 25.0%
!!! GTTTTTTATTCTTCTGCTAA+TGG - chr1_1:72114511-72114530 None:intergenic 25.0%
!!! TCTTCTATGGGTTTATTTTT+AGG + chr1_1:72114550-72114569 Msa0041690:CDS 25.0%
!!! CTTCTATGGGTTTATTTTTA+GGG + chr1_1:72114551-72114570 Msa0041690:CDS 25.0%
! TATCCAAAGGATAATCAAAA+GGG + chr1_1:72114736-72114755 Msa0041690:CDS 25.0%
!!! ATGATTCTGAAACTTGATTT+TGG + chr1_1:72114844-72114863 Msa0041690:intron 25.0%
!!! TGATTCTGAAACTTGATTTT+GGG + chr1_1:72114845-72114864 Msa0041690:intron 25.0%
!! AGGTTTTCAAAGTTTTACTT+AGG + chr1_1:72115147-72115166 Msa0041690:intron 25.0%
!! GGTTTTCAAAGTTTTACTTA+GGG + chr1_1:72115148-72115167 Msa0041690:intron 25.0%
! TTAAATCAGTGAATTCAAAC+AGG - chr1_1:72115174-72115193 None:intergenic 25.0%
!!! AATTCACTGATTTAAGCTTA+TGG + chr1_1:72115179-72115198 Msa0041690:intron 25.0%
! ATCCATTCAAACAAACTAAA+GGG - chr1_1:72115391-72115410 None:intergenic 25.0%
! AATCCATTCAAACAAACTAA+AGG - chr1_1:72115392-72115411 None:intergenic 25.0%
!!! TTTAGTTTGTTTGAATGGAT+TGG + chr1_1:72115391-72115410 Msa0041690:intron 25.0%
!!! AAGTTTTAAAATGTTCTCTC+TGG + chr1_1:72115550-72115569 Msa0041690:intron 25.0%
! AAATTAAAGAAAGCCATAAG+TGG + chr1_1:72115789-72115808 Msa0041690:CDS 25.0%
!! GAATTTGTGAAGGATTTTAA+GGG + chr1_1:72115936-72115955 Msa0041690:CDS 25.0%
! ATGTGGTTATTGAAAATTTG+AGG + chr1_1:72116135-72116154 Msa0041690:CDS 25.0%
!!! TGTATTTTTTCTCCTTCATT+GGG - chr1_1:72116244-72116263 None:intergenic 25.0%
!!! TTGTATTTTTTCTCCTTCAT+TGG - chr1_1:72116245-72116264 None:intergenic 25.0%
! TATGATTATTCAATATCTGC+AGG + chr1_1:72116360-72116379 Msa0041690:CDS 25.0%
!! CAAAACAGAATTTTCAGAAT+CGG - chr1_1:72116430-72116449 None:intergenic 25.0%
!! ACAAAATAGTTTTTGTAGGT+TGG + chr1_1:72116553-72116572 Msa0041690:intron 25.0%
!! CAAAATAGTTTTTGTAGGTT+GGG + chr1_1:72116554-72116573 Msa0041690:intron 25.0%
!! TCTATCAGAAAAGCATATAT+AGG - chr1_1:72116650-72116669 None:intergenic 25.0%
!! ATTTTACTATCTCTTAGTCA+TGG + chr1_1:72116811-72116830 Msa0041690:intron 25.0%
!! TTTTACTATCTCTTAGTCAT+GGG + chr1_1:72116812-72116831 Msa0041690:intron 25.0%
! TTTACCAATCAAAAAGAATC+AGG - chr1_1:72116874-72116893 None:intergenic 25.0%
! TTTGATTGGTAAACCTTATT+TGG + chr1_1:72116881-72116900 Msa0041690:intron 25.0%
! TTATGCAAATAGAGAAGTAA+GGG - chr1_1:72117179-72117198 None:intergenic 25.0%
! TTTATGCAAATAGAGAAGTA+AGG - chr1_1:72117180-72117199 None:intergenic 25.0%
! AAAAATGGCAAAGATTGATT+TGG + chr1_1:72117247-72117266 Msa0041690:intron 25.0%
!! AAAATGGCAAAGATTGATTT+GGG + chr1_1:72117248-72117267 Msa0041690:intron 25.0%
!! TGACAATATCTTTTATTCCT+TGG - chr1_1:72117315-72117334 None:intergenic 25.0%
!! ATTTGTTACACTTCACTTAA+TGG + chr1_1:72117366-72117385 Msa0041690:intron 25.0%
! TAAAAATGAAATGGAACAGA+AGG - chr1_1:72117543-72117562 None:intergenic 25.0%
!!! TTGTTTCTATAGGTTATCTT+GGG - chr1_1:72117756-72117775 None:intergenic 25.0%
!!! ATTGTTTCTATAGGTTATCT+TGG - chr1_1:72117757-72117776 None:intergenic 25.0%
!!! TCTGCATATATTGTTTCTAT+AGG - chr1_1:72117766-72117785 None:intergenic 25.0%
! TATAGAAACAATATATGCAG+AGG + chr1_1:72117765-72117784 Msa0041690:intron 25.0%
!! AAGAACATTTTTGAACATGT+AGG + chr1_1:72117919-72117938 Msa0041690:intron 25.0%
!!! TTCATTCAACTAGTTTCTTT+TGG + chr1_1:72118048-72118067 Msa0041690:intron 25.0%
!!! TCATTCAACTAGTTTCTTTT+GGG + chr1_1:72118049-72118068 Msa0041690:intron 25.0%
! TTGGTCTATTAATCCATAAT+TGG + chr1_1:72118219-72118238 Msa0041690:intron 25.0%
! TAATATTGTTGTCATGTAAG+TGG + chr1_1:72118513-72118532 Msa0041690:intron 25.0%
! AAAAAGAAGTCAATAAACCA+TGG - chr1_1:72118583-72118602 None:intergenic 25.0%
!!! TAACGCTATTTTGTTGTAAT+GGG - chr1_1:72118648-72118667 None:intergenic 25.0%
!!! TTAACGCTATTTTGTTGTAA+TGG - chr1_1:72118649-72118668 None:intergenic 25.0%
! TGGCATCAAAACATTATTAT+GGG - chr1_1:72118766-72118785 None:intergenic 25.0%
! ATGGCATCAAAACATTATTA+TGG - chr1_1:72118767-72118786 None:intergenic 25.0%
! GATGTATATGTTGTATTTGA+TGG - chr1_1:72118786-72118805 None:intergenic 25.0%
! AAGTTGAATCAAGTCAATAA+AGG - chr1_1:72118819-72118838 None:intergenic 25.0%
!!! TTTATTGACTTGATTCAACT+TGG + chr1_1:72118818-72118837 Msa0041690:intron 25.0%
! AAACCCAAGTTCATAATTTA+TGG + chr1_1:72118896-72118915 Msa0041690:intron 25.0%
! TCTCCATAAATTATGAACTT+GGG - chr1_1:72118902-72118921 None:intergenic 25.0%
! TTCTCCATAAATTATGAACT+TGG - chr1_1:72118903-72118922 None:intergenic 25.0%
!! AAGAAAAGTTGCTTTCATTT+GGG - chr1_1:72119036-72119055 None:intergenic 25.0%
!! AAAGAAAAGTTGCTTTCATT+TGG - chr1_1:72119037-72119056 None:intergenic 25.0%
!! TGGTTTGTGTTAACTTAAAA+CGG - chr1_1:72119098-72119117 None:intergenic 25.0%
! AGAATGAAATTTGAACTGAT+GGG - chr1_1:72119295-72119314 None:intergenic 25.0%
! AGTTCAAATTTCATTCTCAT+GGG + chr1_1:72119298-72119317 Msa0041690:intron 25.0%
!!! TGGGAATGTAATTTGTTTTT+TGG + chr1_1:72119317-72119336 Msa0041690:intron 25.0%
!! TAACGTACATCATTTTCAAT+GGG + chr1_1:72119456-72119475 Msa0041690:intron 25.0%
!! TTTTTGCTTATATTTGAGTC+CGG + chr1_1:72119564-72119583 Msa0041690:intron 25.0%
! TTATCAAGACATAAGAGTAA+TGG + chr1_1:72119592-72119611 Msa0041690:intron 25.0%
! TAATTCTGTATTTGTAGACA+AGG - chr1_1:72120026-72120045 None:intergenic 25.0%
! TTGTCTACAAATACAGAATT+AGG + chr1_1:72120025-72120044 Msa0041690:CDS 25.0%
! TGTCTACAAATACAGAATTA+GGG + chr1_1:72120026-72120045 Msa0041690:CDS 25.0%
! TCTTGTATAAACATAGAAAG+GGG - chr1_1:72120121-72120140 None:intergenic 25.0%
! TTTAAACAAAAAAGCTGGTA+TGG - chr1_1:72120174-72120193 None:intergenic 25.0%
!!! ATACATGGATTCTGAAATAA+GGG + chr1_1:72120338-72120357 Msa0041690:CDS 25.0%
! GATAGATGTCATGTATTATT+CGG + chr1_1:72120581-72120600 Msa0041690:three_prime_UTR 25.0%
!!! GTCATTTCAGTAGATTTTTT+AGG + chr1_1:72120655-72120674 Msa0041690:three_prime_UTR 25.0%
CTTTCTTTACCAACAAACAA+AGG + chr1_1:72114306-72114325 Msa0041690:five_prime_UTR 30.0%
TGAGAAAGGAACAAAACAAA+AGG - chr1_1:72114361-72114380 None:intergenic 30.0%
! AGAAGAACTTCGAATTTTCA+TGG - chr1_1:72114533-72114552 None:intergenic 30.0%
AATTCGAAGTTCTTCTTCTA+TGG + chr1_1:72114537-72114556 Msa0041690:CDS 30.0%
ATTCGAAGTTCTTCTTCTAT+GGG + chr1_1:72114538-72114557 Msa0041690:CDS 30.0%
TATGTTCCTTTGATACTATC+CGG - chr1_1:72114652-72114671 None:intergenic 30.0%
GTATCCAAAGGATAATCAAA+AGG + chr1_1:72114735-72114754 Msa0041690:CDS 30.0%
ATTTCCTTTAAATCTAAGCC+TGG + chr1_1:72114784-72114803 Msa0041690:CDS 30.0%
!! TAGTTCTGAGAAATTGATCA+CGG + chr1_1:72115494-72115513 Msa0041690:intron 30.0%
AGAGAACATAACAATACCAT+CGG + chr1_1:72115740-72115759 Msa0041690:CDS 30.0%
TGGTTAACGTAAATCTTGAT+TGG + chr1_1:72115820-72115839 Msa0041690:CDS 30.0%
AGTTAAATGCGATATGTTGA+TGG + chr1_1:72115914-72115933 Msa0041690:CDS 30.0%
! TATGTTGATGGAATTTGTGA+AGG + chr1_1:72115926-72115945 Msa0041690:CDS 30.0%
! GGAATTTGTGAAGGATTTTA+AGG + chr1_1:72115935-72115954 Msa0041690:CDS 30.0%
ACAGTACCAAGTAATATAGT+GGG - chr1_1:72116006-72116025 None:intergenic 30.0%
!! ATTGCTTTTGATGTTTTCCT+AGG + chr1_1:72116314-72116333 Msa0041690:intron 30.0%
!! TTGCTTTTGATGTTTTCCTA+GGG + chr1_1:72116315-72116334 Msa0041690:intron 30.0%
! TAAAAAGATTGAAAGGTGCA+TGG + chr1_1:72116392-72116411 Msa0041690:CDS 30.0%
! AAAAAGATTGAAAGGTGCAT+GGG + chr1_1:72116393-72116412 Msa0041690:CDS 30.0%
! AAAGTAATAAAGGCATACCT+GGG - chr1_1:72116469-72116488 None:intergenic 30.0%
! TAAAGTAATAAAGGCATACC+TGG - chr1_1:72116470-72116489 None:intergenic 30.0%
!!! CTATTCAATTTTGTTTCTGC+AGG + chr1_1:72116701-72116720 Msa0041690:intron 30.0%
!!! TTTTGTTTCTGCAGGAAAAT+TGG + chr1_1:72116709-72116728 Msa0041690:intron 30.0%
GTTATGAAAGCTATTTGTTC+TGG + chr1_1:72116743-72116762 Msa0041690:CDS 30.0%
TTTACTATCTCTTAGTCATG+GGG + chr1_1:72116813-72116832 Msa0041690:intron 30.0%
! CAAACCTGATTCTTTTTGAT+TGG + chr1_1:72116867-72116886 Msa0041690:intron 30.0%
! GATTTGGGATGATTCATATT+TGG + chr1_1:72117263-72117282 Msa0041690:intron 30.0%
AATAGATCTCTAGTAGTTGA+TGG + chr1_1:72117587-72117606 Msa0041690:intron 30.0%
GTTCATGAGTATTTATGCAT+AGG - chr1_1:72117834-72117853 None:intergenic 30.0%
TCTTGCAGTATGTATAACTA+GGG - chr1_1:72117903-72117922 None:intergenic 30.0%
TTCTTGCAGTATGTATAACT+AGG - chr1_1:72117904-72117923 None:intergenic 30.0%
TCAGGATTCAATTCCAATTA+TGG - chr1_1:72118235-72118254 None:intergenic 30.0%
!! ACTTATTTCTTTGCTTTTGC+TGG + chr1_1:72118384-72118403 Msa0041690:intron 30.0%
! GAATGAACCTTGAAGTATTA+TGG + chr1_1:72118406-72118425 Msa0041690:intron 30.0%
TGGATAACCATAATACTTCA+AGG - chr1_1:72118416-72118435 None:intergenic 30.0%
! AAGATCCAGGATTCTATTTT+GGG - chr1_1:72118457-72118476 None:intergenic 30.0%
! AATTCATTAATGGGAGTACA+TGG + chr1_1:72118612-72118631 Msa0041690:intron 30.0%
! ATTCATTAATGGGAGTACAT+GGG + chr1_1:72118613-72118632 Msa0041690:intron 30.0%
TCAAAACATTATTATGGGCT+TGG - chr1_1:72118761-72118780 None:intergenic 30.0%
!!! TTGGATTAGTTTTTAGCTTG+TGG + chr1_1:72118837-72118856 Msa0041690:intron 30.0%
GGTTTGTGTTAACTTAAAAC+GGG - chr1_1:72119097-72119116 None:intergenic 30.0%
AAAAAAGAAGTAATGTTGGG+TGG + chr1_1:72119204-72119223 Msa0041690:intron 30.0%
GAGAATGAAATTTGAACTGA+TGG - chr1_1:72119296-72119315 None:intergenic 30.0%
CAGTTCAAATTTCATTCTCA+TGG + chr1_1:72119297-72119316 Msa0041690:intron 30.0%
! CACTGATTAAGAATCATCAA+TGG - chr1_1:72119374-72119393 None:intergenic 30.0%
CATTGAAAATGATGTACGTT+AGG - chr1_1:72119457-72119476 None:intergenic 30.0%
! CTAACGTACATCATTTTCAA+TGG + chr1_1:72119455-72119474 Msa0041690:intron 30.0%
!! AATTACGCACTGATTAAGAA+TGG - chr1_1:72119539-72119558 None:intergenic 30.0%
ATACAGAATTAGGGTAAGTT+TGG + chr1_1:72120035-72120054 Msa0041690:intron 30.0%
AAAGCTGGTATGGAAATTAA+TGG - chr1_1:72120164-72120183 None:intergenic 30.0%
TCATTTATTTCATGCTTCTG+TGG + chr1_1:72120233-72120252 Msa0041690:intron 30.0%
!! TGTATTTTTGCAGTCATACA+TGG + chr1_1:72120323-72120342 Msa0041690:intron 30.0%
!! CATACATGGATTCTGAAATA+AGG + chr1_1:72120337-72120356 Msa0041690:CDS 30.0%
CATGATTTACAACTTCTGAT+TGG - chr1_1:72120395-72120414 None:intergenic 30.0%
! AGAATTCTGAAAAGGGAAAA+AGG - chr1_1:72120506-72120525 None:intergenic 30.0%
! AATGCTCAGAATTCTGAAAA+GGG - chr1_1:72120513-72120532 None:intergenic 30.0%
TAGCAAGTTGTATACTTGAA+AGG + chr1_1:72120608-72120627 Msa0041690:three_prime_UTR 30.0%
TACTTGAAAGGACTGAATTT+AGG + chr1_1:72120620-72120639 Msa0041690:three_prime_UTR 30.0%
AAATAGGTTACAATCATGAG+TGG - chr1_1:72120704-72120723 None:intergenic 30.0%
!! ACCTATTTTGCTTTTAGTAC+AGG + chr1_1:72120716-72120735 Msa0041690:three_prime_UTR 30.0%
TCCTGTACTAAAAGCAAAAT+AGG - chr1_1:72120720-72120739 None:intergenic 30.0%
!! TATTTTGCTTTTAGTACAGG+AGG + chr1_1:72120719-72120738 Msa0041690:three_prime_UTR 30.0%
GTAAAGAAAGTAACAGAGGA+AGG - chr1_1:72114296-72114315 None:intergenic 35.0%
! GTTGGTAAAGAAAGTAACAG+AGG - chr1_1:72114300-72114319 None:intergenic 35.0%
! ATTGATTCTGTTACGGAGAA+GGG - chr1_1:72114454-72114473 None:intergenic 35.0%
! AATTGATTCTGTTACGGAGA+AGG - chr1_1:72114455-72114474 None:intergenic 35.0%
! GGTTTTCGATTTCCTGAAAT+GGG - chr1_1:72114489-72114508 None:intergenic 35.0%
! ATAGTGCGATTGGTAACTTT+GGG + chr1_1:72114674-72114693 Msa0041690:CDS 35.0%
!! AACTTTGGGATACCTCAATA+CGG + chr1_1:72114688-72114707 Msa0041690:CDS 35.0%
!! CAACCCTTTTGATTATCCTT+TGG - chr1_1:72114742-72114761 None:intergenic 35.0%
TGTAAAGAGTTTGATGAGTC+TGG + chr1_1:72114760-72114779 Msa0041690:CDS 35.0%
GTAAAGAGTTTGATGAGTCT+GGG + chr1_1:72114761-72114780 Msa0041690:CDS 35.0%
!! AGTGTTACTGACTTGTTGTT+TGG + chr1_1:72115008-72115027 Msa0041690:intron 35.0%
! GCATGCTAGATTTAGTCTTT+AGG + chr1_1:72115127-72115146 Msa0041690:intron 35.0%
TTAAGCTTATGGAAAGCTCT+TGG + chr1_1:72115190-72115209 Msa0041690:intron 35.0%
CTTATTTCCATAAGCTTTCC+AGG + chr1_1:72115235-72115254 Msa0041690:intron 35.0%
!!! AGTTTTTTCCATAAGCTACC+TGG - chr1_1:72115256-72115275 None:intergenic 35.0%
!! GTCCCTTTAGTTTGTTTGAA+TGG + chr1_1:72115386-72115405 Msa0041690:intron 35.0%
!! AATGGATTGGTTGTTTGAGA+TGG + chr1_1:72115404-72115423 Msa0041690:intron 35.0%
!! AGTTCTGAGAAATTGATCAC+GGG + chr1_1:72115495-72115514 Msa0041690:intron 35.0%
!! GTCTTTTACATGTTTGTTGC+AGG + chr1_1:72115585-72115604 Msa0041690:intron 35.0%
!!! AGGTTGCTTTTTTGCTTTGA+AGG + chr1_1:72115605-72115624 Msa0041690:intron 35.0%
! GCTCTCATCGAAAAGAATTT+TGG + chr1_1:72115762-72115781 Msa0041690:CDS 35.0%
TTAAAGAAAGCCATAAGTGG+TGG + chr1_1:72115792-72115811 Msa0041690:CDS 35.0%
GCACAAATATTAGAGAAAGG+TGG + chr1_1:72115963-72115982 Msa0041690:CDS 35.0%
! AATATAGTGGGGTGTAAACT+GGG - chr1_1:72115994-72116013 None:intergenic 35.0%
! TAATATAGTGGGGTGTAAAC+TGG - chr1_1:72115995-72116014 None:intergenic 35.0%
TTACACCCCACTATATTACT+TGG + chr1_1:72115997-72116016 Msa0041690:CDS 35.0%
CAGTACCAAGTAATATAGTG+GGG - chr1_1:72116005-72116024 None:intergenic 35.0%
GACAGTACCAAGTAATATAG+TGG - chr1_1:72116007-72116026 None:intergenic 35.0%
AAATGAAACCAAAAAGCCCT+GGG + chr1_1:72116181-72116200 Msa0041690:CDS 35.0%
!! AAGTTGTTTTCAAGAACCCT+AGG - chr1_1:72116334-72116353 None:intergenic 35.0%
!! ATAGTTTTTGTAGGTTGGGA+AGG + chr1_1:72116558-72116577 Msa0041690:intron 35.0%
!! TAGTTTTTGTAGGTTGGGAA+GGG + chr1_1:72116559-72116578 Msa0041690:intron 35.0%
TTACTATCTCTTAGTCATGG+GGG + chr1_1:72116814-72116833 Msa0041690:intron 35.0%
AATGAATGCTTGGAGAACAA+CGG + chr1_1:72116918-72116937 Msa0041690:CDS 35.0%
TGTGATCAGTTCTGTGTATT+AGG + chr1_1:72117422-72117441 Msa0041690:intron 35.0%
GTGATCAGTTCTGTGTATTA+GGG + chr1_1:72117423-72117442 Msa0041690:intron 35.0%
GGTGTTTGTAAGAGCTTATT+TGG + chr1_1:72117663-72117682 Msa0041690:intron 35.0%
AGTGTTTGGAAGAGCTTATT+TGG + chr1_1:72117718-72117737 Msa0041690:intron 35.0%
TTGCAGTATGTATAACTAGG+GGG - chr1_1:72117901-72117920 None:intergenic 35.0%
CTTGCAGTATGTATAACTAG+GGG - chr1_1:72117902-72117921 None:intergenic 35.0%
TTGTTTATCTTACACCTTCC+AGG - chr1_1:72118090-72118109 None:intergenic 35.0%
! GGAAGGTGTAAGATAAACAA+TGG + chr1_1:72118090-72118109 Msa0041690:CDS 35.0%
AGGTGTAAGATAAACAATGG+AGG + chr1_1:72118093-72118112 Msa0041690:CDS 35.0%
AGATAAACAATGGAGGTTGT+TGG + chr1_1:72118100-72118119 Msa0041690:CDS 35.0%
! ACATGCATTTTCTGCTTGTT+CGG + chr1_1:72118140-72118159 Msa0041690:CDS 35.0%
AGGGTATGACAATTTATGTC+AGG - chr1_1:72118253-72118272 None:intergenic 35.0%
ATACACCCAAAATAGAATCC+TGG + chr1_1:72118449-72118468 Msa0041690:intron 35.0%
! CAAGATCCAGGATTCTATTT+TGG - chr1_1:72118458-72118477 None:intergenic 35.0%
! TTCATTAATGGGAGTACATG+GGG + chr1_1:72118614-72118633 Msa0041690:intron 35.0%
TATGCATCAATTTCTCCTCT+TGG - chr1_1:72118704-72118723 None:intergenic 35.0%
! TACGTTGGTTACTTTGGTTT+CGG + chr1_1:72118722-72118741 Msa0041690:intron 35.0%
!! CAAGTCAATAAAGGTACTGT+TGG - chr1_1:72118810-72118829 None:intergenic 35.0%
!! GGGATTTTGATCTCAAACAT+CGG - chr1_1:72119077-72119096 None:intergenic 35.0%
GAAATTTGAACTGATGGGAA+GGG - chr1_1:72119290-72119309 None:intergenic 35.0%
TGAAATTTGAACTGATGGGA+AGG - chr1_1:72119291-72119310 None:intergenic 35.0%
TTGCTTATATTTGTGTTCGG+AGG + chr1_1:72119409-72119428 Msa0041690:intron 35.0%
TGCTTATATTTGTGTTCGGA+GGG + chr1_1:72119410-72119429 Msa0041690:intron 35.0%
! TTATGTCTTGATAATCCCTC+CGG - chr1_1:72119586-72119605 None:intergenic 35.0%
TATTCTTGCAGCTACATTCA+GGG - chr1_1:72119758-72119777 None:intergenic 35.0%
!! TTTCCTTTTTGGTATTCTGC+AGG + chr1_1:72119910-72119929 Msa0041690:intron 35.0%
TTACCTGCAGAATACCAAAA+AGG - chr1_1:72119916-72119935 None:intergenic 35.0%
TCATATAACGTCACCAAACT+GGG - chr1_1:72120070-72120089 None:intergenic 35.0%
! TGAAAAGGGAAAAAGGTACA+AGG - chr1_1:72120499-72120518 None:intergenic 35.0%
! CAATGCTCAGAATTCTGAAA+AGG - chr1_1:72120514-72120533 None:intergenic 35.0%
! GGTTGAGTTCCTTTGTTTGT+TGG - chr1_1:72114318-72114337 None:intergenic 40.0%
!! TTCTGAAACCAACCCATTTC+AGG + chr1_1:72114474-72114493 Msa0041690:five_prime_UTR 40.0%
TTCGATTTCCTGAAATGGGT+TGG - chr1_1:72114485-72114504 None:intergenic 40.0%
! GGGTTTTCGATTTCCTGAAA+TGG - chr1_1:72114490-72114509 None:intergenic 40.0%
ACGAATTTCGCCATTGATGA+AGG - chr1_1:72114598-72114617 None:intergenic 40.0%
TTCATCAATGGCGAAATTCG+TGG + chr1_1:72114597-72114616 Msa0041690:CDS 40.0%
ACTTCACCGGATAGTATCAA+AGG + chr1_1:72114643-72114662 Msa0041690:CDS 40.0%
! GATAGTGCGATTGGTAACTT+TGG + chr1_1:72114673-72114692 Msa0041690:CDS 40.0%
AGCACCAGGCTTAGATTTAA+AGG - chr1_1:72114791-72114810 None:intergenic 40.0%
CGATCGAGCAAAACAATAGT+GGG - chr1_1:72114817-72114836 None:intergenic 40.0%
ACGATCGAGCAAAACAATAG+TGG - chr1_1:72114818-72114837 None:intergenic 40.0%
!! ACTATTGTTTTGCTCGATCG+TGG + chr1_1:72114817-72114836 Msa0041690:CDS 40.0%
TAAGCTACCTGGAAAGCTTA+TGG - chr1_1:72115245-72115264 None:intergenic 40.0%
TAAGCTTTCCAGGTAGCTTA+TGG + chr1_1:72115245-72115264 Msa0041690:intron 40.0%
! GTTGTTTGAGATGGCTCTTT+AGG + chr1_1:72115413-72115432 Msa0041690:intron 40.0%
!!! GCTTTTTTGCTTTGAAGGTG+TGG + chr1_1:72115610-72115629 Msa0041690:CDS 40.0%
AGCTTCTTCTGTTCTTGTTG+CGG + chr1_1:72115650-72115669 Msa0041690:CDS 40.0%
AACCATATCTCCACCACTTA+TGG - chr1_1:72115805-72115824 None:intergenic 40.0%
CGTAAATCTTGATTGGAGAG+AGG + chr1_1:72115827-72115846 Msa0041690:CDS 40.0%
!! TGTGAAGGATTTTAAGGGTG+CGG + chr1_1:72115941-72115960 Msa0041690:CDS 40.0%
GCGGCACAAATATTAGAGAA+AGG + chr1_1:72115960-72115979 Msa0041690:CDS 40.0%
TATTACTTGGTACTGTCCTC+AGG + chr1_1:72116010-72116029 Msa0041690:CDS 40.0%
TTACTTAACGTGAATGCCTG+AGG - chr1_1:72116029-72116048 None:intergenic 40.0%
AAGTCTCAGTGCATTAACCA+TGG + chr1_1:72116056-72116075 Msa0041690:CDS 40.0%
! GAGGCAGTTATGTGTTTTCA+AGG + chr1_1:72116154-72116173 Msa0041690:CDS 40.0%
CAAATGAAACCAAAAAGCCC+TGG + chr1_1:72116180-72116199 Msa0041690:CDS 40.0%
TCAAATTAGGTGCCCAATGA+AGG + chr1_1:72116229-72116248 Msa0041690:CDS 40.0%
GATGCTGTCATTGAATCACT+TGG + chr1_1:72116278-72116297 Msa0041690:CDS 40.0%
! GAATTTTCAGAATCGGCATC+TGG - chr1_1:72116423-72116442 None:intergenic 40.0%
GACAACTAGAGTAGGCAATA+TGG - chr1_1:72116602-72116621 None:intergenic 40.0%
TCTGCAGGAAAATTGGAGAA+AGG + chr1_1:72116716-72116735 Msa0041690:intron 40.0%
! TGGTAAACCTTATTTGGCAG+AGG + chr1_1:72116887-72116906 Msa0041690:intron 40.0%
! TAAACCTTATTTGGCAGAGG+TGG + chr1_1:72116890-72116909 Msa0041690:intron 40.0%
AGCTAACATAACTGCATGCA+AGG + chr1_1:72116962-72116981 Msa0041690:CDS 40.0%
! TTTTCTCAGGATACTTTCCG+TGG + chr1_1:72117069-72117088 Msa0041690:intron 40.0%
TTTCTCAGGATACTTTCCGT+GGG + chr1_1:72117070-72117089 Msa0041690:intron 40.0%
GATGGTTATACGACTTGTGA+AGG + chr1_1:72117138-72117157 Msa0041690:CDS 40.0%
CATTGATCTGTGTTCTTCCA+AGG + chr1_1:72117295-72117314 Msa0041690:intron 40.0%
! ACACTTCACTTAATGGACAG+AGG + chr1_1:72117373-72117392 Msa0041690:intron 40.0%
! CACTTCACTTAATGGACAGA+GGG + chr1_1:72117374-72117393 Msa0041690:intron 40.0%
! ACTTCACTTAATGGACAGAG+GGG + chr1_1:72117375-72117394 Msa0041690:intron 40.0%
AGTTCTGTGTATTAGGGAAG+AGG + chr1_1:72117429-72117448 Msa0041690:intron 40.0%
GTTCTGTGTATTAGGGAAGA+GGG + chr1_1:72117430-72117449 Msa0041690:intron 40.0%
TTCTGTGTATTAGGGAAGAG+GGG + chr1_1:72117431-72117450 Msa0041690:intron 40.0%
TGAGGCCTAATTGAAATCTG+AGG + chr1_1:72117639-72117658 Msa0041690:intron 40.0%
CACCACCTCAGATTTCAATT+AGG - chr1_1:72117647-72117666 None:intergenic 40.0%
TCCAAACACTTGCAGCAAAA+GGG - chr1_1:72117708-72117727 None:intergenic 40.0%
TTCCAAACACTTGCAGCAAA+AGG - chr1_1:72117709-72117728 None:intergenic 40.0%
!!! TCTTTTGGGTTTACAGCTAG+TGG + chr1_1:72118063-72118082 Msa0041690:intron 40.0%
AGAAAATGCATGTCCATTCC+GGG - chr1_1:72118133-72118152 None:intergenic 40.0%
CAGAAAATGCATGTCCATTC+CGG - chr1_1:72118134-72118153 None:intergenic 40.0%
! CGGTTAGTTACCAAGTTTCT+TGG + chr1_1:72118160-72118179 Msa0041690:intron 40.0%
ATTGTCATACCCTCATGAAC+AGG + chr1_1:72118260-72118279 Msa0041690:intron 40.0%
TACCCTCATGAACAGGATAA+TGG + chr1_1:72118267-72118286 Msa0041690:intron 40.0%
CTCCATTATCCTGTTCATGA+GGG - chr1_1:72118272-72118291 None:intergenic 40.0%
!! CTCATGAACAGGATAATGGA+GGG + chr1_1:72118271-72118290 Msa0041690:intron 40.0%
!! TCATGAACAGGATAATGGAG+GGG + chr1_1:72118272-72118291 Msa0041690:intron 40.0%
! GACGGTGTTAAAAATTGTGC+AGG + chr1_1:72118327-72118346 Msa0041690:CDS 40.0%
GGTGTATGTACTTAATGCTC+TGG - chr1_1:72118436-72118455 None:intergenic 40.0%
GGAGAAATTGATGCATACGT+TGG + chr1_1:72118707-72118726 Msa0041690:intron 40.0%
! GATGCATACGTTGGTTACTT+TGG + chr1_1:72118716-72118735 Msa0041690:intron 40.0%
ATATGAGAGCTTCTAAGTCG+AGG + chr1_1:72118926-72118945 Msa0041690:intron 40.0%
!!! ACTGATGGGAAGGGTATTTT+GGG - chr1_1:72119281-72119300 None:intergenic 40.0%
!!! AACTGATGGGAAGGGTATTT+TGG - chr1_1:72119282-72119301 None:intergenic 40.0%
TTGCTTATATTTGAGTCCGG+AGG + chr1_1:72119567-72119586 Msa0041690:intron 40.0%
TGCTTATATTTGAGTCCGGA+GGG + chr1_1:72119568-72119587 Msa0041690:intron 40.0%
TCTGTGAGGAATAAGCACAA+AGG - chr1_1:72119699-72119718 None:intergenic 40.0%
TGCATTCATCAATGTCTGTG+AGG - chr1_1:72119713-72119732 None:intergenic 40.0%
CACAGACATTGATGAATGCA+AGG + chr1_1:72119713-72119732 Msa0041690:intron 40.0%
GTATTCTTGCAGCTACATTC+AGG - chr1_1:72119759-72119778 None:intergenic 40.0%
AATGTAGCTGCAAGAATACC+TGG + chr1_1:72119760-72119779 Msa0041690:CDS 40.0%
ATGTAGCTGCAAGAATACCT+GGG + chr1_1:72119761-72119780 Msa0041690:CDS 40.0%
TGGGGATCTTCTGTATATCA+GGG + chr1_1:72119806-72119825 Msa0041690:CDS 40.0%
ACTCACTTATGCATGCATCA+TGG - chr1_1:72119833-72119852 None:intergenic 40.0%
!! GCATTTTGGGTCATTGTAGT+CGG + chr1_1:72119973-72119992 Msa0041690:CDS 40.0%
GTCATATAACGTCACCAAAC+TGG - chr1_1:72120071-72120090 None:intergenic 40.0%
!! TTCTGAAATAAGGGCCATCA+TGG + chr1_1:72120347-72120366 Msa0041690:CDS 40.0%
ATCGTTGACGCCTTCATCAA+TGG + chr1_1:72114585-72114604 Msa0041690:CDS 45.0%
ATCAATGGCGAAATTCGTGG+TGG + chr1_1:72114600-72114619 Msa0041690:CDS 45.0%
GGAACATACGATAGTGCGAT+TGG + chr1_1:72114664-72114683 Msa0041690:CDS 45.0%
! TTTGGGATACCTCAATACGG+TGG + chr1_1:72114691-72114710 Msa0041690:CDS 45.0%
TGGGAACGTTGTGTATCCAA+AGG + chr1_1:72114723-72114742 Msa0041690:CDS 45.0%
TGTCCATCCAAAAACAGCGT+TGG + chr1_1:72115362-72115381 Msa0041690:intron 45.0%
!!! ACACCAACGCTGTTTTTGGA+TGG - chr1_1:72115368-72115387 None:intergenic 45.0%
AATAACCATGGACACACCTG+AGG + chr1_1:72115692-72115711 Msa0041690:CDS 45.0%
! TTCTTTTCGATGAGAGCCGA+TGG - chr1_1:72115759-72115778 None:intergenic 45.0%
! AGCCATAAGTGGTGGAGATA+TGG + chr1_1:72115800-72115819 Msa0041690:CDS 45.0%
CATACTCCACACGATCATCT+GGG - chr1_1:72115863-72115882 None:intergenic 45.0%
TCATACTCCACACGATCATC+TGG - chr1_1:72115864-72115883 None:intergenic 45.0%
ACCAACAGCAATGATGAGTG+TGG + chr1_1:72115891-72115910 Msa0041690:CDS 45.0%
TCCACACTCATCATTGCTGT+TGG - chr1_1:72115895-72115914 None:intergenic 45.0%
TGAAATCTTGCTCGGGATCT+GGG - chr1_1:72116094-72116113 None:intergenic 45.0%
!! GATTTCAGCACCGGTTATGA+CGG + chr1_1:72116107-72116126 Msa0041690:CDS 45.0%
!! ATTTCAGCACCGGTTATGAC+GGG + chr1_1:72116108-72116127 Msa0041690:CDS 45.0%
CACATCTTTCCCGTCATAAC+CGG - chr1_1:72116120-72116139 None:intergenic 45.0%
CGACTGTTGACAACTAGAGT+AGG - chr1_1:72116610-72116629 None:intergenic 45.0%
GTCAACAGTCGACAATATCG+AGG + chr1_1:72116619-72116638 Msa0041690:CDS 45.0%
GGTGGAGACAAATGAATGCT+TGG + chr1_1:72116908-72116927 Msa0041690:CDS 45.0%
AACTGCACACCATCTACCAA+GGG - chr1_1:72117111-72117130 None:intergenic 45.0%
GTAGATGGTGTGCAGTTCAA+AGG + chr1_1:72117114-72117133 Msa0041690:CDS 45.0%
! CTTCACTTAATGGACAGAGG+GGG + chr1_1:72117376-72117395 Msa0041690:intron 45.0%
GGCCTAATTGAAATCTGAGG+TGG + chr1_1:72117642-72117661 Msa0041690:intron 45.0%
TCACAGTCGAAGAGTCAATC+AGG - chr1_1:72117806-72117825 None:intergenic 45.0%
CAGTATGTATAACTAGGGGG+CGG - chr1_1:72117898-72117917 None:intergenic 45.0%
CCTCCATTATCCTGTTCATG+AGG - chr1_1:72118273-72118292 None:intergenic 45.0%
! CCTCATGAACAGGATAATGG+AGG + chr1_1:72118270-72118289 Msa0041690:intron 45.0%
CACTTTGTAGACATGCCGAA+GGG + chr1_1:72118670-72118689 Msa0041690:intron 45.0%
! CTCTTGGTGTACTAACCCTT+CGG - chr1_1:72118688-72118707 None:intergenic 45.0%
ATCTCAAACATCGGACTGAG+TGG - chr1_1:72119068-72119087 None:intergenic 45.0%
AATAGCATGTCTCGCAAACC+AGG - chr1_1:72119128-72119147 None:intergenic 45.0%
TGTAGCTGCAAGAATACCTG+GGG + chr1_1:72119762-72119781 Msa0041690:CDS 45.0%
AGCTATAACTGCAGTTGCAG+TGG + chr1_1:72119786-72119805 Msa0041690:CDS 45.0%
GCTATAACTGCAGTTGCAGT+GGG + chr1_1:72119787-72119806 Msa0041690:CDS 45.0%
CTATAACTGCAGTTGCAGTG+GGG + chr1_1:72119788-72119807 Msa0041690:CDS 45.0%
GTGGGGATCTTCTGTATATC+AGG + chr1_1:72119805-72119824 Msa0041690:CDS 45.0%
! CATTGTAGTCGGCTTAGTTC+TGG + chr1_1:72119984-72120003 Msa0041690:CDS 45.0%
TTGGTTGCATTCTCCCAGTT+TGG + chr1_1:72120054-72120073 Msa0041690:intron 45.0%
! ACTTCTGATTGGCTGTCCAA+GGG - chr1_1:72120384-72120403 None:intergenic 45.0%
! AACTTCTGATTGGCTGTCCA+AGG - chr1_1:72120385-72120404 None:intergenic 45.0%
AGTGAAACATGTCAGCCTGT+TGG + chr1_1:72120436-72120455 Msa0041690:three_prime_UTR 45.0%
!! TAAATAAATTAAAGTAATAA+AGG - chr1_1:72116479-72116498 None:intergenic 5.0%
!!! ATTACTTTAATTTATTTATT+TGG + chr1_1:72116481-72116500 Msa0041690:intron 5.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr1_1:72114223-72114242 None:intergenic 50.0%
TGGTGGAGAAGAACAGCTTG+AGG + chr1_1:72114617-72114636 Msa0041690:CDS 50.0%
GGTGGAGAAGAACAGCTTGA+GGG + chr1_1:72114618-72114637 Msa0041690:CDS 50.0%
ACCTCAATACGGTGGTAGCA+TGG + chr1_1:72114699-72114718 Msa0041690:CDS 50.0%
AATACGGTGGTAGCATGGCT+GGG + chr1_1:72114704-72114723 Msa0041690:CDS 50.0%
!! ACAATAGTGGGAAGAGCACC+AGG - chr1_1:72114805-72114824 None:intergenic 50.0%
!! AGGGACACCAACGCTGTTTT+TGG - chr1_1:72115372-72115391 None:intergenic 50.0%
AGAAGAAGCTCCAGCCTTCT+GGG - chr1_1:72115640-72115659 None:intergenic 50.0%
ATCGTGTGGAGTATGAGCTG+TGG + chr1_1:72115868-72115887 Msa0041690:CDS 50.0%
GAAATCTTGCTCGGGATCTG+GGG - chr1_1:72116093-72116112 None:intergenic 50.0%
CTGAAATCTTGCTCGGGATC+TGG - chr1_1:72116095-72116114 None:intergenic 50.0%
! ACCGGTGCTGAAATCTTGCT+CGG - chr1_1:72116102-72116121 None:intergenic 50.0%
! CGGTTATGACGGGAAAGATG+TGG + chr1_1:72116118-72116137 Msa0041690:CDS 50.0%
AAACCAAAAAGCCCTGGGTG+TGG + chr1_1:72116186-72116205 Msa0041690:CDS 50.0%
GAAAGAAGAGCAAGATGCCC+AGG + chr1_1:72116449-72116468 Msa0041690:CDS 50.0%
CCACTGCTCAAACAAACAGC+TGG - chr1_1:72116788-72116807 None:intergenic 50.0%
CCAGCTGTTTGTTTGAGCAG+TGG + chr1_1:72116785-72116804 Msa0041690:CDS 50.0%
GTCTCCACCTCTGCCAAATA+AGG - chr1_1:72116897-72116916 None:intergenic 50.0%
GAATGCTTGGAGAACAACGG+TGG + chr1_1:72116921-72116940 Msa0041690:CDS 50.0%
TGGAGAACAACGGTGGTTGT+TGG + chr1_1:72116928-72116947 Msa0041690:CDS 50.0%
GAACAACGGTGGTTGTTGGA+AGG + chr1_1:72116932-72116951 Msa0041690:CDS 50.0%
TGTGAATGCCCCTTGGTAGA+TGG + chr1_1:72117099-72117118 Msa0041690:CDS 50.0%
ACTGCACACCATCTACCAAG+GGG - chr1_1:72117110-72117129 None:intergenic 50.0%
GAACTGCACACCATCTACCA+AGG - chr1_1:72117112-72117131 None:intergenic 50.0%
GGTGTGCAGTTCAAAGGAGA+TGG + chr1_1:72117120-72117139 Msa0041690:CDS 50.0%
! TTAATGGACAGAGGGGGTTC+AGG + chr1_1:72117382-72117401 Msa0041690:intron 50.0%
! TAATGGACAGAGGGGGTTCA+GGG + chr1_1:72117383-72117402 Msa0041690:intron 50.0%
! GCCCTTTTGCTGCAAGTGTT+TGG + chr1_1:72117704-72117723 Msa0041690:intron 50.0%
! TTACAGCTAGTGGACCTGGA+AGG + chr1_1:72118073-72118092 Msa0041690:intron 50.0%
! GAGTGTCCTGCAGGCTTTAA+AGG + chr1_1:72118303-72118322 Msa0041690:CDS 50.0%
!! CCTGCAGGCTTTAAAGGTGA+CGG + chr1_1:72118309-72118328 Msa0041690:CDS 50.0%
CCTTCGGCATGTCTACAAAG+TGG - chr1_1:72118672-72118691 None:intergenic 50.0%
CCACTTTGTAGACATGCCGA+AGG + chr1_1:72118669-72118688 Msa0041690:intron 50.0%
! CGAAGGGTTAGTACACCAAG+AGG + chr1_1:72118686-72118705 Msa0041690:intron 50.0%
AACACAAACCAGCTGAAGCC+TGG + chr1_1:72119107-72119126 Msa0041690:intron 50.0%
ACTGCAGTTATAGCTTCCCC+AGG - chr1_1:72119781-72119800 None:intergenic 50.0%
CTGCAGGTAAAACTGCCAGT+CGG + chr1_1:72119926-72119945 Msa0041690:intron 50.0%
TGCAGGTAAAACTGCCAGTC+GGG + chr1_1:72119927-72119946 Msa0041690:intron 50.0%
GGAAGGAGGAAAGTCTGCTT+GGG + chr1_1:72119948-72119967 Msa0041690:CDS 50.0%
! AGTCTGCTTGGGCTGCATTT+TGG + chr1_1:72119959-72119978 Msa0041690:CDS 50.0%
! GTCTGCTTGGGCTGCATTTT+GGG + chr1_1:72119960-72119979 Msa0041690:CDS 50.0%
GGGCATATACTGTGCCATGA+TGG - chr1_1:72120364-72120383 None:intergenic 50.0%
CATGGCACAGTATATGCCCT+TGG + chr1_1:72120365-72120384 Msa0041690:CDS 50.0%
GAAACATGTCAGCCTGTTGG+CGG + chr1_1:72120439-72120458 Msa0041690:three_prime_UTR 50.0%
GTTGTGTGGGAAATGAGACC+TGG + chr1_1:72120463-72120482 Msa0041690:three_prime_UTR 50.0%
TGGGAAATGAGACCTGGTTG+TGG + chr1_1:72120469-72120488 Msa0041690:three_prime_UTR 50.0%
GTACAAGGTATGCCACAACC+AGG - chr1_1:72120484-72120503 None:intergenic 50.0%
CAGCTTGAGGGTCACTTCAC+CGG + chr1_1:72114630-72114649 Msa0041690:CDS 55.0%
GCCATGCTACCACCGTATTG+AGG - chr1_1:72114703-72114722 None:intergenic 55.0%
CAATACGGTGGTAGCATGGC+TGG + chr1_1:72114703-72114722 Msa0041690:CDS 55.0%
! GAAGGTGTGGAATGCCCAGA+AGG + chr1_1:72115623-72115642 Msa0041690:CDS 55.0%
CAGAAGAAGCTCCAGCCTTC+TGG - chr1_1:72115641-72115660 None:intergenic 55.0%
AACCATGGACACACCTGAGG+AGG + chr1_1:72115695-72115714 Msa0041690:CDS 55.0%
ATCCTCCTCAGGTGTGTCCA+TGG - chr1_1:72115700-72115719 None:intergenic 55.0%
ATGGACACACCTGAGGAGGA+TGG + chr1_1:72115699-72115718 Msa0041690:CDS 55.0%
GCAGATGATCCATCCTCCTC+AGG - chr1_1:72115711-72115730 None:intergenic 55.0%
CCACACGATCATCTGGGTGA+GGG - chr1_1:72115857-72115876 None:intergenic 55.0%
TCCACACGATCATCTGGGTG+AGG - chr1_1:72115858-72115877 None:intergenic 55.0%
CTGGGGCACAGTATCTTCCA+TGG - chr1_1:72116076-72116095 None:intergenic 55.0%
! CCGGTGCTGAAATCTTGCTC+GGG - chr1_1:72116101-72116120 None:intergenic 55.0%
CCCGAGCAAGATTTCAGCAC+CGG + chr1_1:72116098-72116117 Msa0041690:CDS 55.0%
CAAAAAGCCCTGGGTGTGGT+GGG + chr1_1:72116190-72116209 Msa0041690:CDS 55.0%
ACATAGTCCCACCACACCCA+GGG - chr1_1:72116200-72116219 None:intergenic 55.0%
AACATAGTCCCACCACACCC+AGG - chr1_1:72116201-72116220 None:intergenic 55.0%
! TAGGTTGGGAAGGGATCACG+AGG + chr1_1:72116568-72116587 Msa0041690:intron 55.0%
GGCATTCACATACTCGCCCA+CGG - chr1_1:72117089-72117108 None:intergenic 55.0%
GCGAGTATGTGAATGCCCCT+TGG + chr1_1:72117092-72117111 Msa0041690:CDS 55.0%
! GGGTTTACAGCTAGTGGACC+TGG + chr1_1:72118069-72118088 Msa0041690:intron 55.0%
GAGGTTGTTGGCATGAAGCC+CGG + chr1_1:72118112-72118131 Msa0041690:CDS 55.0%
TGTTGGCATGAAGCCCGGAA+TGG + chr1_1:72118117-72118136 Msa0041690:CDS 55.0%
GTTAGATGCGAGTGTCCTGC+AGG + chr1_1:72118294-72118313 Msa0041690:CDS 55.0%
!! CCGTCACCTTTAAAGCCTGC+AGG - chr1_1:72118312-72118331 None:intergenic 55.0%
GGTAAAACTGCCAGTCGGGA+AGG + chr1_1:72119931-72119950 Msa0041690:intron 55.0%
AAAACTGCCAGTCGGGAAGG+AGG + chr1_1:72119934-72119953 Msa0041690:CDS 55.0%
AGACTTTCCTCCTTCCCGAC+TGG - chr1_1:72119944-72119963 None:intergenic 55.0%
GGGAAGGAGGAAAGTCTGCT+TGG + chr1_1:72119947-72119966 Msa0041690:CDS 55.0%
!! GCTTAGTTCTGGCCGCTTCA+GGG + chr1_1:72119995-72120014 Msa0041690:CDS 55.0%
!! CTTAGTTCTGGCCGCTTCAG+GGG + chr1_1:72119996-72120015 Msa0041690:CDS 55.0%
GACAAGGTATGCCCCTGAAG+CGG - chr1_1:72120010-72120029 None:intergenic 55.0%
GTGTGGAATGCCCAGAAGGC+TGG + chr1_1:72115627-72115646 Msa0041690:CDS 60.0%
CCCTCACCCAGATGATCGTG+TGG + chr1_1:72115854-72115873 Msa0041690:CDS 60.0%
! CCACCACACCCAGGGCTTTT+TGG - chr1_1:72116192-72116211 None:intergenic 60.0%
CCAAAAAGCCCTGGGTGTGG+TGG + chr1_1:72116189-72116208 Msa0041690:CDS 60.0%
CTCGCAAACCAGGCTTCAGC+TGG - chr1_1:72119118-72119137 None:intergenic 60.0%
!! GGCTTAGTTCTGGCCGCTTC+AGG + chr1_1:72119994-72120013 Msa0041690:CDS 60.0%
AGCCTGTTGGCGGAGTTGTG+TGG + chr1_1:72120449-72120468 Msa0041690:three_prime_UTR 60.0%
GCCTGTTGGCGGAGTTGTGT+GGG + chr1_1:72120450-72120469 Msa0041690:three_prime_UTR 60.0%
TCCCACACAACTCCGCCAAC+AGG - chr1_1:72120454-72120473 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 72114191 72120763 72114191 ID=Msa0041690;Name=Msa0041690
chr1_1 mRNA 72114191 72120763 72114191 ID=Msa0041690-mRNA-1;Parent=Msa0041690;Name=Msa0041690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=341|0.90|0.83|1|0.90|0.83|12|329|641
chr1_1 exon 72114191 72114841 72114191 ID=Msa0041690-mRNA-1:exon:23972;Parent=Msa0041690-mRNA-1
chr1_1 exon 72115607 72116303 72115607 ID=Msa0041690-mRNA-1:exon:23973;Parent=Msa0041690-mRNA-1
chr1_1 exon 72116359 72116470 72116359 ID=Msa0041690-mRNA-1:exon:23974;Parent=Msa0041690-mRNA-1
chr1_1 exon 72116571 72116640 72116571 ID=Msa0041690-mRNA-1:exon:23975;Parent=Msa0041690-mRNA-1
chr1_1 exon 72116723 72116806 72116723 ID=Msa0041690-mRNA-1:exon:23976;Parent=Msa0041690-mRNA-1
chr1_1 exon 72116907 72116983 72116907 ID=Msa0041690-mRNA-1:exon:23977;Parent=Msa0041690-mRNA-1
chr1_1 exon 72117078 72117159 72117078 ID=Msa0041690-mRNA-1:exon:23978;Parent=Msa0041690-mRNA-1
chr1_1 exon 72118079 72118161 72118079 ID=Msa0041690-mRNA-1:exon:23979;Parent=Msa0041690-mRNA-1
chr1_1 exon 72118282 72118348 72118282 ID=Msa0041690-mRNA-1:exon:23980;Parent=Msa0041690-mRNA-1
chr1_1 exon 72119718 72119846 72119718 ID=Msa0041690-mRNA-1:exon:23981;Parent=Msa0041690-mRNA-1
chr1_1 exon 72119932 72120047 72119932 ID=Msa0041690-mRNA-1:exon:23982;Parent=Msa0041690-mRNA-1
chr1_1 exon 72120336 72120763 72120336 ID=Msa0041690-mRNA-1:exon:23983;Parent=Msa0041690-mRNA-1
chr1_1 five_prime_UTR 72114191 72114531 72114191 ID=Msa0041690-mRNA-1:five_prime_utr;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72114532 72114841 72114532 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72115607 72116303 72115607 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72116359 72116470 72116359 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72116571 72116640 72116571 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72116723 72116806 72116723 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72116907 72116983 72116907 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72117078 72117159 72117078 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72118079 72118161 72118079 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72118282 72118348 72118282 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72119718 72119846 72119718 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72119932 72120047 72119932 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 CDS 72120336 72120434 72120336 ID=Msa0041690-mRNA-1:cds;Parent=Msa0041690-mRNA-1
chr1_1 three_prime_UTR 72120435 72120763 72120435 ID=Msa0041690-mRNA-1:three_prime_utr;Parent=Msa0041690-mRNA-1
Gene Sequence

>Msa0041690

ATGAAAATTCGAAGTTCTTCTTCTATGGGTTTATTTTTAGGGTTTCTGTTACTATCGTTGACGCCTTCATCAATGGCGAAATTCGTGGTGGAGAAGAACAGCTTGAGGGTCACTTCACCGGATAGTATCAAAGGAACATACGATAGTGCGATTGGTAACTTTGGGATACCTCAATACGGTGGTAGCATGGCTGGGAACGTTGTGTATCCAAAGGATAATCAAAAGGGTTGTAAAGAGTTTGATGAGTCTGGGATTTCCTTTAAATCTAAGCCTGGTGCTCTTCCCACTATTGTTTTGCTCGATCGTGGAAGTTGCTTTTTTGCTTTGAAGGTGTGGAATGCCCAGAAGGCTGGAGCTTCTTCTGTTCTTGTTGCGGATGATATTGAAGAAAAATTAATAACCATGGACACACCTGAGGAGGATGGATCATCTGCAAAATATATAGAGAACATAACAATACCATCGGCTCTCATCGAAAAGAATTTTGGTGAAAAATTAAAGAAAGCCATAAGTGGTGGAGATATGGTTAACGTAAATCTTGATTGGAGAGAGGCTGTCCCTCACCCAGATGATCGTGTGGAGTATGAGCTGTGGACCAACAGCAATGATGAGTGTGGAGTTAAATGCGATATGTTGATGGAATTTGTGAAGGATTTTAAGGGTGCGGCACAAATATTAGAGAAAGGTGGTTATGCCCAGTTTACACCCCACTATATTACTTGGTACTGTCCTCAGGCATTCACGTTAAGTAAGCAGTGCAAGTCTCAGTGCATTAACCATGGAAGATACTGTGCCCCAGATCCCGAGCAAGATTTCAGCACCGGTTATGACGGGAAAGATGTGGTTATTGAAAATTTGAGGCAGTTATGTGTTTTCAAGGTTGCAAATGAAACCAAAAAGCCCTGGGTGTGGTGGGACTATGTTACTGATTTTCAAATTAGGTGCCCAATGAAGGAGAAAAAATACAATAAGAAATGTGCAGATGCTGTCATTGAATCACTTGGCAATTATGATTATTCAATATCTGCAGGTCTTGATATTAAAAAGATTGAAAGGTGCATGGGAGATCCAGATGCCGATTCTGAAAATTCTGTTTTGAAAGAAGAGCAAGATGCCCAGGTTGGGAAGGGATCACGAGGTGACGTTACCATATTGCCTACTCTAGTTGTCAACAGTCGACAATATCGAGGAAAATTGGAGAAAGGTGCTGTTATGAAAGCTATTTGTTCTGGTTTTGAAGAAACTACTGAACCAGCTGTTTGTTTGAGCAGTGAGGTGGAGACAAATGAATGCTTGGAGAACAACGGTGGTTGTTGGAAGGATAAAGCAGCTAACATAACTGCATGCAAGGATACTTTCCGTGGGCGAGTATGTGAATGCCCCTTGGTAGATGGTGTGCAGTTCAAAGGAGATGGTTATACGACTTGTGAAGCTAGTGGACCTGGAAGGTGTAAGATAAACAATGGAGGTTGTTGGCATGAAGCCCGGAATGGACATGCATTTTCTGCTTGTTCGGATAATGGAGGGGTTAGATGCGAGTGTCCTGCAGGCTTTAAAGGTGACGGTGTTAAAAATTGTGCAGACATTGATGAATGCAAGGAGAAGAAAGCTTGTCAGTGCCCTGAATGTAGCTGCAAGAATACCTGGGGAAGCTATAACTGCAGTTGCAGTGGGGATCTTCTGTATATCAGGGACCATGATGCATGCATAAGTAAAACTGCCAGTCGGGAAGGAGGAAAGTCTGCTTGGGCTGCATTTTGGGTCATTGTAGTCGGCTTAGTTCTGGCCGCTTCAGGGGCATACCTTGTCTACAAATACAGAATTAGGTCATACATGGATTCTGAAATAAGGGCCATCATGGCACAGTATATGCCCTTGGACAGCCAATCAGAAGTTGTAAATCATGTCAACGATGAAAGAGCATGA
Protein sequence

>Msa0041690

MKIRSSSSMGLFLGFLLLSLTPSSMAKFVVEKNSLRVTSPDSIKGTYDSAIGNFGIPQYGGSMAGNVVYPKDNQKGCKEFDESGISFKSKPGALPTIVLLDRGSCFFALKVWNAQKAGASSVLVADDIEEKLITMDTPEEDGSSAKYIENITIPSALIEKNFGEKLKKAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGYAQFTPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVIENLRQLCVFKVANETKKPWVWWDYVTDFQIRCPMKEKKYNKKCADAVIESLGNYDYSISAGLDIKKIERCMGDPDADSENSVLKEEQDAQVGKGSRGDVTILPTLVVNSRQYRGKLEKGAVMKAICSGFEETTEPAVCLSSEVETNECLENNGGCWKDKAANITACKDTFRGRVCECPLVDGVQFKGDGYTTCEASGPGRCKINNGGCWHEARNGHAFSACSDNGGVRCECPAGFKGDGVKNCADIDECKEKKACQCPECSCKNTWGSYNCSCSGDLLYIRDHDACISKTASREGGKSAWAAFWVIVVGLVLAASGAYLVYKYRIRSYMDSEIRAIMAQYMPLDSQSEVVNHVNDERA*