AlfalfaGEDB | Msa1003340

M. sativa cultivar zhongmu-4 / Msa1003340

KEGG: K06911
GO: -
PFAM: PF02678.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003340	XP_013447791.1	98.973	292	3	0	1	292	1	292	0.0	600

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003340	sp\|Q9ZW82\|PRNL2_ARATH	72.297	296	78	2	1	292	26	321	3.91e-157	444

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003340	A0A072TVC4	98.973	292	3	0	1	292	1	292	0.0	600

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa1003340	0.830896	2.267918e-55	-8.615850e-47
Msa0002710	Msa1003340	0.815060	1.121815e-51	-8.615850e-47
Msa0003630	Msa1003340	0.805560	1.258421e-49	-8.615850e-47
Msa0016540	Msa1003340	0.804303	2.304907e-49	-8.615850e-47
Msa0041690	Msa1003340	0.825894	3.654975e-54	-8.615850e-47
Msa0047640	Msa1003340	0.803770	2.974694e-49	-8.615850e-47
Msa0058310	Msa1003340	0.806547	7.802074e-50	-8.615850e-47
Msa0070070	Msa1003340	0.809318	2.007982e-50	-8.615850e-47
Msa0105520	Msa1003340	0.803025	4.244943e-49	-8.615850e-47
Msa0106620	Msa1003340	0.835880	1.296910e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003340	MtrunA17_Chr7g0214271	98.973	292	3	0	1	292	1	292	0.0	600
Msa1003340	MtrunA17_Chr5g0445161	64.912	285	98	2	8	291	5	288	2.24e-143	405

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1003340	AT2G43120.1	72.297	296	78	2	1	292	26	321	3.97e-158	444
Msa1003340	AT2G43120.2	72.297	296	78	2	1	292	77	372	9.90e-158	444
Msa1003340	AT3G59220.1	65.827	278	94	1	9	285	7	284	4.72e-139	394
Msa1003340	AT3G59260.1	64.591	257	90	1	37	292	15	271	3.40e-122	350
Msa1003340	AT1G50590.1	56.478	301	121	5	1	292	3	302	9.53e-120	346
Msa1003340	AT1G50590.2	53.947	228	96	4	74	292	1	228	2.57e-85	256
Msa1003340	AT1G50590.3	53.947	228	96	4	74	292	1	228	2.57e-85	256

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Find 80 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATGGACTGCAATTG+TGG	0.498536	7_1:+504932	Msa1003340:CDS
AAACCTCTGTGTGGATGATC+AGG	0.399050	7_1:-504317	None:intergenic
AAACTTGTTAAGAACAAACC+TGG	0.569350	7_1:-503903	None:intergenic
AAAGGACCATATTGAGCAAT+AGG	0.387063	7_1:-505844	None:intergenic
AAATCTCAACGTGAAGGAGA+TGG	0.573455	7_1:+503932	Msa1003340:CDS
AACTTGAGTTCCTGGCATCA+TGG	0.595280	7_1:-505623	None:intergenic
AACTTGTTAAGAACAAACCT+GGG	0.556777	7_1:-503902	None:intergenic
AAGGTGATGGACTTAGTGTT+TGG	0.411445	7_1:+505761	Msa1003340:CDS
AAGTGATCCAACATTAGAAA+AGG	0.502764	7_1:-504145	None:intergenic
AATAAGAACTGGTGATGTTC+AGG	0.449423	7_1:+504743	Msa1003340:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGATCCAACATTAGAAA+AGG	-	chr7_1:504148-504167	None:intergenic	30.0%
ACAAATATAAAACCTCTGTG+TGG	-	chr7_1:504329-504348	None:intergenic	30.0%
TGAAAAAAATGTGGTTGGAA+GGG	-	chr7_1:505091-505110	None:intergenic	30.0%
ACAAAATTCATCACCAATTG+TGG	+	chr7_1:505714-505733	Msa1003340:CDS	30.0%
CTTGAGTGAAAACAATGATA+TGG	-	chr7_1:505744-505763	None:intergenic	30.0%
AATGAACCTATTGCTCAATA+TGG	+	chr7_1:505838-505857	Msa1003340:CDS	30.0%
GATTGTGTATTCATGACAAA+AGG	-	chr7_1:505865-505884	None:intergenic	30.0%
TTGAAGACTATCAATATGGT+AGG	+	chr7_1:505902-505921	Msa1003340:CDS	30.0%
TTGAGATGAGGCTAAATTAT+AGG	+	chr7_1:505932-505951	Msa1003340:CDS	30.0%
TGTTATAAGCATAGCTATCA+AGG	+	chr7_1:506269-506288	Msa1003340:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	503762	506463	503762	ID=Msa1003340;Name=Msa1003340
chr7_1	mRNA	503762	506463	503762	ID=Msa1003340-mRNA-1;Parent=Msa1003340;Name=Msa1003340-mRNA-1;_AED=0.05;_eAED=0.05;_QI=110\|1\|1\|1\|1\|1\|7\|500\|292
chr7_1	exon	503762	503981	503762	ID=Msa1003340-mRNA-1:exon:120;Parent=Msa1003340-mRNA-1
chr7_1	exon	504123	504172	504123	ID=Msa1003340-mRNA-1:exon:121;Parent=Msa1003340-mRNA-1
chr7_1	exon	504297	504335	504297	ID=Msa1003340-mRNA-1:exon:122;Parent=Msa1003340-mRNA-1
chr7_1	exon	504439	504467	504439	ID=Msa1003340-mRNA-1:exon:123;Parent=Msa1003340-mRNA-1
chr7_1	exon	504702	504764	504702	ID=Msa1003340-mRNA-1:exon:124;Parent=Msa1003340-mRNA-1
chr7_1	exon	504880	504980	504880	ID=Msa1003340-mRNA-1:exon:125;Parent=Msa1003340-mRNA-1
chr7_1	exon	505477	506463	505477	ID=Msa1003340-mRNA-1:exon:126;Parent=Msa1003340-mRNA-1
chr7_1	five_prime_UTR	503762	503871	503762	ID=Msa1003340-mRNA-1:five_prime_utr;Parent=Msa1003340-mRNA-1
chr7_1	CDS	503872	503981	503872	ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1
chr7_1	CDS	504123	504172	504123	ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1
chr7_1	CDS	504297	504335	504297	ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1
chr7_1	CDS	504439	504467	504439	ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1
chr7_1	CDS	504702	504764	504702	ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1
chr7_1	CDS	504880	504980	504880	ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1
chr7_1	CDS	505477	505963	505477	ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1
chr7_1	three_prime_UTR	505964	506463	505964	ID=Msa1003340-mRNA-1:three_prime_utr;Parent=Msa1003340-mRNA-1

Gene Sequence

>Msa1003340

ATGTCAGGAATCTGTTCTGCTTTTAACACCCCCAGGTTTGTTCTTAACAAGTTTTTAGCCAAATCTCAACGTGAAGGAGATGGTGCTGTTGTTAGAAGAGGCATTGGAAGAAGTGAGTTGAAGAACTTGGATCCTTTTCTAATGTTGGATCACTTCTCAGTATCTCCTCCTGGAGGATTTCCTGATCATCCACACAGAGGTTTTGAGACAGTCACCTACATGCTAGAGGGAGGTATAACTCACCAAGATTTTGCTGGCCACAAGGGTACAATAAGAACTGGTGATGTTCAGTGGATGACTGCAGGGAGGGGAATTATTCACTCTGAAATGCCTGCAGAAGCAAAAAACAATGGACTGCAATTGTGGATCAATTTAGCAGCTAATGACAAAATGATTGAACCAAACTATCAAGAACTTCTAAGTGAGAACATACCATCAGGAGAAAAAGATGGTGTTGAAGTGAGAGTGATAGCAGGAGAATCAATGGGAGTGAATTCACCTGTCTACACAAGAACACCAACCATGTTCCTTGATTTCACCATGATGCCAGGAACTCAAGTTCATCAAACTATTCCTGAGTCATGGAATTCATTTGCATACATAATTGAAGGAGAAGGTGTTTTTGGTTCACAAAATTCATCACCAATTGTGGCTCACCATATCATTGTTTTCACTCAAGGTGATGGACTTAGTGTTTGGAATAATAACTCTTCAAAGCCTTTGAGGTTTGTGCTCATTGGTGGACAACCATTGAATGAACCTATTGCTCAATATGGTCCTTTTGTCATGAATACACAATCTGAGATTGAGAAGACTATTGAAGACTATCAATATGGTAGGAATGGTTTTGAGATGAGGCTAAATTATAGGTCTCAATAG

Protein sequence

>Msa1003340

MSGICSAFNTPRFVLNKFLAKSQREGDGAVVRRGIGRSELKNLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYMLEGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAEAKNNGLQLWINLAANDKMIEPNYQELLSENIPSGEKDGVEVRVIAGESMGVNSPVYTRTPTMFLDFTMMPGTQVHQTIPESWNSFAYIIEGEGVFGSQNSSPIVAHHIIVFTQGDGLSVWNNNSSKPLRFVLIGGQPLNEPIAQYGPFVMNTQSEIEKTIEDYQYGRNGFEMRLNYRSQ*