Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003340 | XP_013447791.1 | 98.973 | 292 | 3 | 0 | 1 | 292 | 1 | 292 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003340 | sp|Q9ZW82|PRNL2_ARATH | 72.297 | 296 | 78 | 2 | 1 | 292 | 26 | 321 | 3.91e-157 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003340 | A0A072TVC4 | 98.973 | 292 | 3 | 0 | 1 | 292 | 1 | 292 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa1003340 | 0.830896 | 2.267918e-55 | -8.615850e-47 |
| Msa0002710 | Msa1003340 | 0.815060 | 1.121815e-51 | -8.615850e-47 |
| Msa0003630 | Msa1003340 | 0.805560 | 1.258421e-49 | -8.615850e-47 |
| Msa0016540 | Msa1003340 | 0.804303 | 2.304907e-49 | -8.615850e-47 |
| Msa0041690 | Msa1003340 | 0.825894 | 3.654975e-54 | -8.615850e-47 |
| Msa0047640 | Msa1003340 | 0.803770 | 2.974694e-49 | -8.615850e-47 |
| Msa0058310 | Msa1003340 | 0.806547 | 7.802074e-50 | -8.615850e-47 |
| Msa0070070 | Msa1003340 | 0.809318 | 2.007982e-50 | -8.615850e-47 |
| Msa0105520 | Msa1003340 | 0.803025 | 4.244943e-49 | -8.615850e-47 |
| Msa0106620 | Msa1003340 | 0.835880 | 1.296910e-56 | -8.615850e-47 |
| Msa0106710 | Msa1003340 | 0.819008 | 1.454913e-52 | -8.615850e-47 |
| Msa0116790 | Msa1003340 | 0.837570 | 4.807844e-57 | -8.615850e-47 |
| Msa0630940 | Msa1003340 | 0.800745 | 1.247854e-48 | -8.615850e-47 |
| Msa0662940 | Msa1003340 | 0.834051 | 3.747208e-56 | -8.615850e-47 |
| Msa0669180 | Msa1003340 | 0.809342 | 1.984162e-50 | -8.615850e-47 |
| Msa0673270 | Msa1003340 | 0.812128 | 4.953617e-51 | -8.615850e-47 |
| Msa0689760 | Msa1003340 | 0.807888 | 4.055138e-50 | -8.615850e-47 |
| Msa0698100 | Msa1003340 | 0.817661 | 2.937796e-52 | -8.615850e-47 |
| Msa0712560 | Msa1003340 | 0.807237 | 5.574703e-50 | -8.615850e-47 |
| Msa0716860 | Msa1003340 | 0.804580 | 2.017891e-49 | -8.615850e-47 |
| Msa0744100 | Msa1003340 | 0.810554 | 1.088308e-50 | -8.615850e-47 |
| Msa0750250 | Msa1003340 | 0.809543 | 1.796734e-50 | -8.615850e-47 |
| Msa0758250 | Msa1003340 | 0.800571 | 1.353987e-48 | -8.615850e-47 |
| Msa0791090 | Msa1003340 | 0.809794 | 1.586576e-50 | -8.615850e-47 |
| Msa0825270 | Msa1003340 | 0.804247 | 2.366974e-49 | -8.615850e-47 |
| Msa0138640 | Msa1003340 | 0.808427 | 3.114566e-50 | -8.615850e-47 |
| Msa0192640 | Msa1003340 | 0.806811 | 6.862496e-50 | -8.615850e-47 |
| Msa0372810 | Msa1003340 | 0.803475 | 3.425207e-49 | -8.615850e-47 |
| Msa0389910 | Msa1003340 | 0.810880 | 9.251423e-51 | -8.615850e-47 |
| Msa0411410 | Msa1003340 | 0.809382 | 1.945051e-50 | -8.615850e-47 |
| Msa0434570 | Msa1003340 | 0.820341 | 7.220475e-53 | -8.615850e-47 |
| Msa0434770 | Msa1003340 | 0.812210 | 4.755153e-51 | -8.615850e-47 |
| Msa1003340 | Msa1043330 | 0.843511 | 1.339658e-58 | -8.615850e-47 |
| Msa1003340 | Msa1046440 | 0.986953 | 1.525465e-168 | -8.615850e-47 |
| Msa1003340 | Msa1088410 | 0.819571 | 1.082758e-52 | -8.615850e-47 |
| Msa1003340 | Msa1126240 | 0.815894 | 7.317780e-52 | -8.615850e-47 |
| Msa1003340 | Msa1214320 | 0.803205 | 3.896451e-49 | -8.615850e-47 |
| Msa1003340 | Msa1320820 | 0.807938 | 3.958748e-50 | -8.615850e-47 |
| Msa1003340 | Msa1344310 | 0.815712 | 8.031913e-52 | -8.615850e-47 |
| Msa1003340 | Msa1359920 | 0.801516 | 8.680095e-49 | -8.615850e-47 |
| Msa1003340 | Msa1413380 | 0.814681 | 1.361363e-51 | -8.615850e-47 |
| Msa1003340 | Msa1420250 | 0.803781 | 2.958617e-49 | -8.615850e-47 |
| Msa1003340 | Msa1424350 | 0.801889 | 7.275813e-49 | -8.615850e-47 |
| Msa0312910 | Msa1003340 | 0.810852 | 9.378649e-51 | -8.615850e-47 |
| Msa0322900 | Msa1003340 | 0.809901 | 1.504627e-50 | -8.615850e-47 |
| Msa0363060 | Msa1003340 | 0.816974 | 4.192732e-52 | -8.615850e-47 |
| Msa0363810 | Msa1003340 | 0.819032 | 1.436795e-52 | -8.615850e-47 |
| Msa0486670 | Msa1003340 | 0.800381 | 1.480350e-48 | -8.615850e-47 |
| Msa0538800 | Msa1003340 | 0.816397 | 5.648730e-52 | -8.615850e-47 |
| Msa0542470 | Msa1003340 | 0.841582 | 4.355504e-58 | -8.615850e-47 |
| Msa0597770 | Msa1003340 | 0.820739 | 5.850729e-53 | -8.615850e-47 |
| Msa0598520 | Msa1003340 | 0.833869 | 4.163088e-56 | -8.615850e-47 |
| Msa0864420 | Msa1003340 | 0.805207 | 1.492165e-49 | -8.615850e-47 |
| Msa0870650 | Msa1003340 | 0.807622 | 4.619111e-50 | -8.615850e-47 |
| Msa0934140 | Msa1003340 | 0.800225 | 1.592304e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003340 | MtrunA17_Chr7g0214271 | 98.973 | 292 | 3 | 0 | 1 | 292 | 1 | 292 | 0.0 | 600 |
| Msa1003340 | MtrunA17_Chr5g0445161 | 64.912 | 285 | 98 | 2 | 8 | 291 | 5 | 288 | 2.24e-143 | 405 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003340 | AT2G43120.1 | 72.297 | 296 | 78 | 2 | 1 | 292 | 26 | 321 | 3.97e-158 | 444 |
| Msa1003340 | AT2G43120.2 | 72.297 | 296 | 78 | 2 | 1 | 292 | 77 | 372 | 9.90e-158 | 444 |
| Msa1003340 | AT3G59220.1 | 65.827 | 278 | 94 | 1 | 9 | 285 | 7 | 284 | 4.72e-139 | 394 |
| Msa1003340 | AT3G59260.1 | 64.591 | 257 | 90 | 1 | 37 | 292 | 15 | 271 | 3.40e-122 | 350 |
| Msa1003340 | AT1G50590.1 | 56.478 | 301 | 121 | 5 | 1 | 292 | 3 | 302 | 9.53e-120 | 346 |
| Msa1003340 | AT1G50590.2 | 53.947 | 228 | 96 | 4 | 74 | 292 | 1 | 228 | 2.57e-85 | 256 |
| Msa1003340 | AT1G50590.3 | 53.947 | 228 | 96 | 4 | 74 | 292 | 1 | 228 | 2.57e-85 | 256 |
Find 80 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGATGAGGCTAAATTAT+AGG | 0.245605 | 7_1:+505932 | Msa1003340:CDS |
| CTTAGAAGTTCTTGATAGTT+TGG | 0.247944 | 7_1:-505484 | None:intergenic |
| ACAGTTTAAATTATTTATAT+TGG | 0.248743 | 7_1:+506165 | Msa1003340:three_prime_UTR |
| GTTTGATGAACTTGAGTTCC+TGG | 0.312165 | 7_1:-505631 | None:intergenic |
| ATCTCCTTCACGTTGAGATT+TGG | 0.320492 | 7_1:-503930 | None:intergenic |
| AGGAGCTGAAAAGATATCTT+TGG | 0.374089 | 7_1:+506296 | Msa1003340:three_prime_UTR |
| AAAGGACCATATTGAGCAAT+AGG | 0.387063 | 7_1:-505844 | None:intergenic |
| AATGAACCTATTGCTCAATA+TGG | 0.391955 | 7_1:+505838 | Msa1003340:CDS |
| CTAATGTTGGATCACTTCTC+AGG | 0.398272 | 7_1:+504151 | Msa1003340:CDS |
| GACTTTGCAGTATCTCCTCC+TGG | 0.398797 | 7_1:+504287 | Msa1003340:intron |
| AAACCTCTGTGTGGATGATC+AGG | 0.399050 | 7_1:-504317 | None:intergenic |
| ACTATTGAAGACTATCAATA+TGG | 0.403357 | 7_1:+505898 | Msa1003340:CDS |
| CAGAAGTGAGTTGAAGAACT+TGG | 0.405137 | 7_1:+504120 | Msa1003340:intron |
| ATAACTCTTCAAAGCCTTTG+AGG | 0.406915 | 7_1:+505788 | Msa1003340:CDS |
| CCTTTGAGGTTTGTGCTCAT+TGG | 0.408779 | 7_1:+505802 | Msa1003340:CDS |
| AAGGTGATGGACTTAGTGTT+TGG | 0.411445 | 7_1:+505761 | Msa1003340:CDS |
| AGTGATAGCAGGAGAATCAA+TGG | 0.413770 | 7_1:+505549 | Msa1003340:CDS |
| TCATTTGCATACATAATTGA+AGG | 0.440817 | 7_1:+505673 | Msa1003340:CDS |
| CTTGAGTGAAAACAATGATA+TGG | 0.447295 | 7_1:-505741 | None:intergenic |
| TTGAGGTTTGTGCTCATTGG+TGG | 0.448207 | 7_1:+505805 | Msa1003340:CDS |
| AATAAGAACTGGTGATGTTC+AGG | 0.449423 | 7_1:+504743 | Msa1003340:CDS |
| CTTGATTTCACCATGATGCC+AGG | 0.451578 | 7_1:+505613 | Msa1003340:CDS |
| TAGAAGATTTAAATTGCTGC+TGG | 0.458283 | 7_1:+506358 | Msa1003340:three_prime_UTR |
| GAGAGAAAGTGGTCATGAAA+GGG | 0.462559 | 7_1:-506443 | None:intergenic |
| AGCATAGCTATCAAGGTAGT+AGG | 0.463815 | 7_1:+506276 | Msa1003340:three_prime_UTR |
| TGAGCAATAGGTTCATTCAA+TGG | 0.465412 | 7_1:-505832 | None:intergenic |
| CCTTGTGGCCAGCAAAATCT+TGG | 0.466878 | 7_1:-504716 | None:intergenic |
| TGTTATAAGCATAGCTATCA+AGG | 0.470214 | 7_1:+506269 | Msa1003340:three_prime_UTR |
| ACAAAATTCATCACCAATTG+TGG | 0.472578 | 7_1:+505714 | Msa1003340:CDS |
| TTTGTGCAGTGGATGACTGC+AGG | 0.479673 | 7_1:+504871 | Msa1003340:intron |
| GGAGAGAAAGTGGTCATGAA+AGG | 0.492113 | 7_1:-506444 | None:intergenic |
| CACAAGGGTACAATAAGAAC+TGG | 0.492820 | 7_1:+504732 | Msa1003340:CDS |
| ATTTGTCTCTCAAGTCATCA+TGG | 0.494981 | 7_1:+506397 | Msa1003340:three_prime_UTR |
| AAAACAATGGACTGCAATTG+TGG | 0.498536 | 7_1:+504932 | Msa1003340:CDS |
| AAGTGATCCAACATTAGAAA+AGG | 0.502764 | 7_1:-504145 | None:intergenic |
| AGAAACTTAGTACATGGAAA+AGG | 0.505568 | 7_1:-506336 | None:intergenic |
| GACTATCAATATGGTAGGAA+TGG | 0.507862 | 7_1:+505907 | Msa1003340:CDS |
| CTGGCATCATGGTGAAATCA+AGG | 0.508793 | 7_1:-505612 | None:intergenic |
| GATTGTGTATTCATGACAAA+AGG | 0.515755 | 7_1:-505862 | None:intergenic |
| GTTGGTGTTCTTGTGTAGAC+AGG | 0.520089 | 7_1:-505583 | None:intergenic |
| AGAGAAAGTGGTCATGAAAG+GGG | 0.527622 | 7_1:-506442 | None:intergenic |
| GTGATAGCAGGAGAATCAAT+GGG | 0.534226 | 7_1:+505550 | Msa1003340:CDS |
| CTAATTATTAGGAGAGAAAG+TGG | 0.534254 | 7_1:-506454 | None:intergenic |
| CTATGCTTATAACATTGAAA+AGG | 0.536014 | 7_1:-506260 | None:intergenic |
| ATGATATGGTGAGCCACAAT+TGG | 0.536674 | 7_1:-505727 | None:intergenic |
| CAGTTCTTATTGTACCCTTG+TGG | 0.546116 | 7_1:-504731 | None:intergenic |
| GCAAATGAATTCCATGACTC+AGG | 0.546190 | 7_1:-505658 | None:intergenic |
| ATCAAACTATTCCTGAGTCA+TGG | 0.547660 | 7_1:+505647 | Msa1003340:CDS |
| TCTTCTAGAAACTTAGTACA+TGG | 0.551120 | 7_1:-506342 | None:intergenic |
| AACTTGTTAAGAACAAACCT+GGG | 0.556777 | 7_1:-503902 | None:intergenic |
| GCTGTTGTTAGAAGAGGCAT+TGG | 0.557157 | 7_1:+503956 | Msa1003340:CDS |
| CTAAGTGAGAACATACCATC+AGG | 0.564908 | 7_1:+505502 | Msa1003340:CDS |
| GAGAAAGTGGTCATGAAAGG+GGG | 0.567915 | 7_1:-506441 | None:intergenic |
| AAACTTGTTAAGAACAAACC+TGG | 0.569350 | 7_1:-503903 | None:intergenic |
| TTGTGCAGTGGATGACTGCA+GGG | 0.569971 | 7_1:+504872 | Msa1003340:intron |
| AAATCTCAACGTGAAGGAGA+TGG | 0.573455 | 7_1:+503932 | Msa1003340:CDS |
| TTAGCCAAATCTCAACGTGA+AGG | 0.576381 | 7_1:+503926 | Msa1003340:CDS |
| TTGAAGACTATCAATATGGT+AGG | 0.576598 | 7_1:+505902 | Msa1003340:CDS |
| GTTGAAGTGAGAGTGATAGC+AGG | 0.579971 | 7_1:+505538 | Msa1003340:CDS |
| GATGGTGCTGTTGTTAGAAG+AGG | 0.580369 | 7_1:+503950 | Msa1003340:CDS |
| TTGTTAGAAGAGGCATTGGA+AGG | 0.587330 | 7_1:+503960 | Msa1003340:CDS |
| GCATACATAATTGAAGGAGA+AGG | 0.591101 | 7_1:+505679 | Msa1003340:CDS |
| GGATGATCAGGAAATCCTCC+AGG | 0.591695 | 7_1:-504305 | None:intergenic |
| GCAGTGGATGACTGCAGGGA+GGG | 0.592783 | 7_1:+504876 | Msa1003340:intron |
| AACTTGAGTTCCTGGCATCA+TGG | 0.595280 | 7_1:-505623 | None:intergenic |
| TTTGTCTCTCAAGTCATCAT+GGG | 0.597393 | 7_1:+506398 | Msa1003340:three_prime_UTR |
| CAGTGGATGACTGCAGGGAG+GGG | 0.597592 | 7_1:+504877 | Msa1003340:intron |
| CATGGTGAAATCAAGGAACA+TGG | 0.604059 | 7_1:-505605 | None:intergenic |
| CCAATGAGCACAAACCTCAA+AGG | 0.613431 | 7_1:-505802 | None:intergenic |
| GATACATACCTCTAGCATGT+AGG | 0.619014 | 7_1:-504454 | None:intergenic |
| TGCAGTGGATGACTGCAGGG+AGG | 0.648962 | 7_1:+504875 | Msa1003340:intron |
| TTTGCAGTATCTCCTCCTGG+AGG | 0.671519 | 7_1:+504290 | Msa1003340:intron |
| GTGAAATCAAGGAACATGGT+TGG | 0.672435 | 7_1:-505601 | None:intergenic |
| GACAGTCACCTACATGCTAG+AGG | 0.675614 | 7_1:+504446 | Msa1003340:CDS |
| ACTTGTTAAGAACAAACCTG+GGG | 0.678566 | 7_1:-503901 | None:intergenic |
| ACAAATATAAAACCTCTGTG+TGG | 0.680198 | 7_1:-504326 | None:intergenic |
| AATGTTTGAACAAATTTACG+CGG | 0.681725 | 7_1:-506049 | None:intergenic |
| TGATCAGGAAATCCTCCAGG+AGG | 0.721413 | 7_1:-504302 | None:intergenic |
| TTTCCTGATCATCCACACAG+AGG | 0.724938 | 7_1:+504314 | Msa1003340:CDS |
| CTTGTTAAGAACAAACCTGG+GGG | 0.779406 | 7_1:-503900 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTAATTATTTTAT+TGG | + | chr7_1:504996-505015 | Msa1003340:intron | 0.0% |
| !! | TTATTCAAAAGAAAAATAAA+TGG | - | chr7_1:504051-504070 | None:intergenic | 10.0% |
| !! | AATTATAATCTATAATCTAT+AGG | + | chr7_1:505313-505332 | Msa1003340:intron | 10.0% |
| !! | ATTATAATCTATAATCTATA+GGG | + | chr7_1:505314-505333 | Msa1003340:intron | 10.0% |
| !! | ACAGTTTAAATTATTTATAT+TGG | + | chr7_1:506165-506184 | Msa1003340:three_prime_UTR | 10.0% |
| !! | TATGAAATAAAAAAATAACA+AGG | + | chr7_1:506222-506241 | Msa1003340:three_prime_UTR | 10.0% |
| !! | AATATATGTATAAAATGTTG+AGG | - | chr7_1:504373-504392 | None:intergenic | 15.0% |
| !! | CTACATATAATTAAATGTGT+CGG | - | chr7_1:504523-504542 | None:intergenic | 20.0% |
| !!! | ATTTAATTTACCTTCAACAT+TGG | + | chr7_1:504628-504647 | Msa1003340:intron | 20.0% |
| !!! | TTATGATCAATTAGTGTTTT+TGG | - | chr7_1:504779-504798 | None:intergenic | 20.0% |
| !! | AAAAACATAAGAAGCTTAAA+TGG | + | chr7_1:504809-504828 | Msa1003340:intron | 20.0% |
| !! | AGATTTAGACTTCTTAAATA+AGG | - | chr7_1:505136-505155 | None:intergenic | 20.0% |
| !! | AATGCAATATATATAGTGTA+AGG | + | chr7_1:505176-505195 | Msa1003340:intron | 20.0% |
| !! | TAATCTATAGGGATAAAAAT+TGG | + | chr7_1:505325-505344 | Msa1003340:intron | 20.0% |
| !! | GTAAAAATAATGACCTTAAT+CGG | - | chr7_1:505418-505437 | None:intergenic | 20.0% |
| ! | TATGTATAAAATGTTGAGGA+AGG | - | chr7_1:504369-504388 | None:intergenic | 25.0% |
| ! | TACCAAAATCTATATAGTGT+CGG | + | chr7_1:504566-504585 | Msa1003340:intron | 25.0% |
| ! | CAATAATATACCAATGTTGA+AGG | - | chr7_1:504641-504660 | None:intergenic | 25.0% |
| ! | TAAGAAGCTTAAATGGAATT+TGG | + | chr7_1:504816-504835 | Msa1003340:intron | 25.0% |
| !! | TTGGTGCAAAGTATATTTTA+CGG | + | chr7_1:505015-505034 | Msa1003340:intron | 25.0% |
| !! | TTTTGTGAGTGAAAAAAATG+TGG | - | chr7_1:505100-505119 | None:intergenic | 25.0% |
| !!! | TCTTTTTCAATTCTTCTCTA+GGG | + | chr7_1:505277-505296 | Msa1003340:intron | 25.0% |
| !!! | CTTTGTTTAACTTTTGATTC+AGG | + | chr7_1:505455-505474 | Msa1003340:intron | 25.0% |
| ! | TCATTTGCATACATAATTGA+AGG | + | chr7_1:505673-505692 | Msa1003340:CDS | 25.0% |
| ! | ACTATTGAAGACTATCAATA+TGG | + | chr7_1:505898-505917 | Msa1003340:CDS | 25.0% |
| ! | AATGTTTGAACAAATTTACG+CGG | - | chr7_1:506052-506071 | None:intergenic | 25.0% |
| ! | CTATGCTTATAACATTGAAA+AGG | - | chr7_1:506263-506282 | None:intergenic | 25.0% |
| !!! | TCTGTATCTTTTTCAATGTC+AGG | + | chr7_1:503857-503876 | Msa1003340:exon | 30.0% |
| !! | AACTTGTTAAGAACAAACCT+GGG | - | chr7_1:503905-503924 | None:intergenic | 30.0% |
| !! | AAACTTGTTAAGAACAAACC+TGG | - | chr7_1:503906-503925 | None:intergenic | 30.0% |
| AAGTGATCCAACATTAGAAA+AGG | - | chr7_1:504148-504167 | None:intergenic | 30.0% | |
| ! | TATGTTTGAGATTGAGAGTA+AGG | + | chr7_1:504198-504217 | Msa1003340:intron | 30.0% |
| !!! | TAAGGCTTTGTTTGTTTTGT+TGG | + | chr7_1:504216-504235 | Msa1003340:intron | 30.0% |
| !!! | TTGTTTGTTTTGTTGGCTTT+TGG | + | chr7_1:504223-504242 | Msa1003340:intron | 30.0% |
| ACAAATATAAAACCTCTGTG+TGG | - | chr7_1:504329-504348 | None:intergenic | 30.0% | |
| ! | AGTTTTACATTGCTTGATTC+AGG | + | chr7_1:504680-504699 | Msa1003340:intron | 30.0% |
| ! | GTTTTACATTGCTTGATTCA+GGG | + | chr7_1:504681-504700 | Msa1003340:intron | 30.0% |
| !!! | TATTTGTCTTTTTTGTGCAG+TGG | + | chr7_1:504860-504879 | Msa1003340:intron | 30.0% |
| TGAAAAAAATGTGGTTGGAA+GGG | - | chr7_1:505091-505110 | None:intergenic | 30.0% | |
| !!! | GTCTTTTTCAATTCTTCTCT+AGG | + | chr7_1:505276-505295 | Msa1003340:intron | 30.0% |
| !!! | ACAAAGTTTTGAACCGATTA+AGG | + | chr7_1:505402-505421 | Msa1003340:intron | 30.0% |
| ! | CTTAGAAGTTCTTGATAGTT+TGG | - | chr7_1:505487-505506 | None:intergenic | 30.0% |
| ACAAAATTCATCACCAATTG+TGG | + | chr7_1:505714-505733 | Msa1003340:CDS | 30.0% | |
| CTTGAGTGAAAACAATGATA+TGG | - | chr7_1:505744-505763 | None:intergenic | 30.0% | |
| ! | CATATCATTGTTTTCACTCA+AGG | + | chr7_1:505742-505761 | Msa1003340:CDS | 30.0% |
| AATGAACCTATTGCTCAATA+TGG | + | chr7_1:505838-505857 | Msa1003340:CDS | 30.0% | |
| GATTGTGTATTCATGACAAA+AGG | - | chr7_1:505865-505884 | None:intergenic | 30.0% | |
| TTGAAGACTATCAATATGGT+AGG | + | chr7_1:505902-505921 | Msa1003340:CDS | 30.0% | |
| TTGAGATGAGGCTAAATTAT+AGG | + | chr7_1:505932-505951 | Msa1003340:CDS | 30.0% | |
| TGTTATAAGCATAGCTATCA+AGG | + | chr7_1:506269-506288 | Msa1003340:three_prime_UTR | 30.0% | |
| AGAAACTTAGTACATGGAAA+AGG | - | chr7_1:506339-506358 | None:intergenic | 30.0% | |
| ! | TCTTCTAGAAACTTAGTACA+TGG | - | chr7_1:506345-506364 | None:intergenic | 30.0% |
| TAGAAGATTTAAATTGCTGC+TGG | + | chr7_1:506358-506377 | Msa1003340:three_prime_UTR | 30.0% | |
| ! | ACTTGTTAAGAACAAACCTG+GGG | - | chr7_1:503904-503923 | None:intergenic | 35.0% |
| ! | CTTGGATCCTTTTCTAATGT+TGG | + | chr7_1:504138-504157 | Msa1003340:CDS | 35.0% |
| ! | GATTTGCATATCTCTTTTGC+AGG | + | chr7_1:504417-504436 | Msa1003340:intron | 35.0% |
| AAACATCGGAAACACAAAGA+TGG | - | chr7_1:504491-504510 | None:intergenic | 35.0% | |
| GTCGGTATCATGTTAAACAT+CGG | - | chr7_1:504505-504524 | None:intergenic | 35.0% | |
| ! | CACCGACACTATATAGATTT+TGG | - | chr7_1:504571-504590 | None:intergenic | 35.0% |
| ! | ATAACTCACCAAGATTTTGC+TGG | + | chr7_1:504708-504727 | Msa1003340:CDS | 35.0% |
| ! | AATAAGAACTGGTGATGTTC+AGG | + | chr7_1:504743-504762 | Msa1003340:CDS | 35.0% |
| !! | AAAACAATGGACTGCAATTG+TGG | + | chr7_1:504932-504951 | Msa1003340:CDS | 35.0% |
| TACGGATAATTAATCTCCGT+TGG | + | chr7_1:505033-505052 | Msa1003340:intron | 35.0% | |
| !! | CTGGCTAATCAATTTTAGCA+CGG | + | chr7_1:505061-505080 | Msa1003340:intron | 35.0% |
| GAAAAAAATGTGGTTGGAAG+GGG | - | chr7_1:505090-505109 | None:intergenic | 35.0% | |
| GTGAAAAAAATGTGGTTGGA+AGG | - | chr7_1:505092-505111 | None:intergenic | 35.0% | |
| GTGAGTGAAAAAAATGTGGT+TGG | - | chr7_1:505096-505115 | None:intergenic | 35.0% | |
| ! | ATCGGTTCAAAACTTTGTCA+TGG | - | chr7_1:505400-505419 | None:intergenic | 35.0% |
| ATACCATCAGGAGAAAAAGA+TGG | + | chr7_1:505514-505533 | Msa1003340:CDS | 35.0% | |
| ATCAAACTATTCCTGAGTCA+TGG | + | chr7_1:505647-505666 | Msa1003340:CDS | 35.0% | |
| GCATACATAATTGAAGGAGA+AGG | + | chr7_1:505679-505698 | Msa1003340:CDS | 35.0% | |
| !!! | ATTGAAGGAGAAGGTGTTTT+TGG | + | chr7_1:505688-505707 | Msa1003340:CDS | 35.0% |
| ! | ATTGTTTTCACTCAAGGTGA+TGG | + | chr7_1:505748-505767 | Msa1003340:CDS | 35.0% |
| ATAACTCTTCAAAGCCTTTG+AGG | + | chr7_1:505788-505807 | Msa1003340:CDS | 35.0% | |
| TGAGCAATAGGTTCATTCAA+TGG | - | chr7_1:505835-505854 | None:intergenic | 35.0% | |
| AAAGGACCATATTGAGCAAT+AGG | - | chr7_1:505847-505866 | None:intergenic | 35.0% | |
| GACTATCAATATGGTAGGAA+TGG | + | chr7_1:505907-505926 | Msa1003340:CDS | 35.0% | |
| AGGAGCTGAAAAGATATCTT+TGG | + | chr7_1:506296-506315 | Msa1003340:three_prime_UTR | 35.0% | |
| ATTTGTCTCTCAAGTCATCA+TGG | + | chr7_1:506397-506416 | Msa1003340:three_prime_UTR | 35.0% | |
| TTTGTCTCTCAAGTCATCAT+GGG | + | chr7_1:506398-506417 | Msa1003340:three_prime_UTR | 35.0% | |
| CTTGTTAAGAACAAACCTGG+GGG | - | chr7_1:503903-503922 | None:intergenic | 40.0% | |
| TTAGCCAAATCTCAACGTGA+AGG | + | chr7_1:503926-503945 | Msa1003340:CDS | 40.0% | |
| ATCTCCTTCACGTTGAGATT+TGG | - | chr7_1:503933-503952 | None:intergenic | 40.0% | |
| AAATCTCAACGTGAAGGAGA+TGG | + | chr7_1:503932-503951 | Msa1003340:CDS | 40.0% | |
| !! | TTGTTAGAAGAGGCATTGGA+AGG | + | chr7_1:503960-503979 | Msa1003340:CDS | 40.0% |
| ! | CAGAAGTGAGTTGAAGAACT+TGG | + | chr7_1:504120-504139 | Msa1003340:intron | 40.0% |
| CTAATGTTGGATCACTTCTC+AGG | + | chr7_1:504151-504170 | Msa1003340:CDS | 40.0% | |
| GATACATACCTCTAGCATGT+AGG | - | chr7_1:504457-504476 | None:intergenic | 40.0% | |
| TTACATTGCTTGATTCAGGG+AGG | + | chr7_1:504684-504703 | Msa1003340:intron | 40.0% | |
| CAGTTCTTATTGTACCCTTG+TGG | - | chr7_1:504734-504753 | None:intergenic | 40.0% | |
| ! | CACAAGGGTACAATAAGAAC+TGG | + | chr7_1:504732-504751 | Msa1003340:CDS | 40.0% |
| !!! | CCATTGTTTTTTGCTTCTGC+AGG | - | chr7_1:504922-504941 | None:intergenic | 40.0% |
| CCTGCAGAAGCAAAAAACAA+TGG | + | chr7_1:504919-504938 | Msa1003340:CDS | 40.0% | |
| TTAATCTCCGTTGGAGAATC+TGG | + | chr7_1:505042-505061 | Msa1003340:intron | 40.0% | |
| ! | TGATTAGCCAGATTCTCCAA+CGG | - | chr7_1:505052-505071 | None:intergenic | 40.0% |
| CTAAGTGAGAACATACCATC+AGG | + | chr7_1:505502-505521 | Msa1003340:CDS | 40.0% | |
| ! | ACACCATCTTTTTCTCCTGA+TGG | - | chr7_1:505520-505539 | None:intergenic | 40.0% |
| AGTGATAGCAGGAGAATCAA+TGG | + | chr7_1:505549-505568 | Msa1003340:CDS | 40.0% | |
| GTGATAGCAGGAGAATCAAT+GGG | + | chr7_1:505550-505569 | Msa1003340:CDS | 40.0% | |
| GTGAAATCAAGGAACATGGT+TGG | - | chr7_1:505604-505623 | None:intergenic | 40.0% | |
| CATGGTGAAATCAAGGAACA+TGG | - | chr7_1:505608-505627 | None:intergenic | 40.0% | |
| GTTTGATGAACTTGAGTTCC+TGG | - | chr7_1:505634-505653 | None:intergenic | 40.0% | |
| GCAAATGAATTCCATGACTC+AGG | - | chr7_1:505661-505680 | None:intergenic | 40.0% | |
| ATGATATGGTGAGCCACAAT+TGG | - | chr7_1:505730-505749 | None:intergenic | 40.0% | |
| !! | AAGGTGATGGACTTAGTGTT+TGG | + | chr7_1:505761-505780 | Msa1003340:CDS | 40.0% |
| !!! | GTAGGAATGGTTTTGAGATG+AGG | + | chr7_1:505920-505939 | Msa1003340:CDS | 40.0% |
| AGCATAGCTATCAAGGTAGT+AGG | + | chr7_1:506276-506295 | Msa1003340:three_prime_UTR | 40.0% | |
| !! | GATGGTGCTGTTGTTAGAAG+AGG | + | chr7_1:503950-503969 | Msa1003340:CDS | 45.0% |
| ! | GCTGTTGTTAGAAGAGGCAT+TGG | + | chr7_1:503956-503975 | Msa1003340:CDS | 45.0% |
| TTTCCTGATCATCCACACAG+AGG | + | chr7_1:504314-504333 | Msa1003340:CDS | 45.0% | |
| AAACCTCTGTGTGGATGATC+AGG | - | chr7_1:504320-504339 | None:intergenic | 45.0% | |
| ! | CAAGATTTTGCTGGCCACAA+GGG | + | chr7_1:504717-504736 | Msa1003340:CDS | 45.0% |
| ! | AGAACTGGTGATGTTCAGGT+AGG | + | chr7_1:504747-504766 | Msa1003340:intron | 45.0% |
| GTTGAAGTGAGAGTGATAGC+AGG | + | chr7_1:505538-505557 | Msa1003340:CDS | 45.0% | |
| ! | GTTGGTGTTCTTGTGTAGAC+AGG | - | chr7_1:505586-505605 | None:intergenic | 45.0% |
| CTGGCATCATGGTGAAATCA+AGG | - | chr7_1:505615-505634 | None:intergenic | 45.0% | |
| CTTGATTTCACCATGATGCC+AGG | + | chr7_1:505613-505632 | Msa1003340:CDS | 45.0% | |
| AACTTGAGTTCCTGGCATCA+TGG | - | chr7_1:505626-505645 | None:intergenic | 45.0% | |
| CCAATGAGCACAAACCTCAA+AGG | - | chr7_1:505805-505824 | None:intergenic | 45.0% | |
| !! | CCTTTGAGGTTTGTGCTCAT+TGG | + | chr7_1:505802-505821 | Msa1003340:CDS | 45.0% |
| TTGAGGTTTGTGCTCATTGG+TGG | + | chr7_1:505805-505824 | Msa1003340:CDS | 45.0% | |
| GAGAAAGTGGTCATGAAAGG+GGG | - | chr7_1:506444-506463 | None:intergenic | 45.0% | |
| !! | CTATTATAATATAAAATATA+TGG | + | chr7_1:505372-505391 | Msa1003340:intron | 5.0% |
| !! | GTTCTGCTTTTAACACCCCC+AGG | + | chr7_1:503885-503904 | Msa1003340:CDS | 50.0% |
| GACTTTGCAGTATCTCCTCC+TGG | + | chr7_1:504287-504306 | Msa1003340:intron | 50.0% | |
| TTTGCAGTATCTCCTCCTGG+AGG | + | chr7_1:504290-504309 | Msa1003340:intron | 50.0% | |
| TGATCAGGAAATCCTCCAGG+AGG | - | chr7_1:504305-504324 | None:intergenic | 50.0% | |
| GGATGATCAGGAAATCCTCC+AGG | - | chr7_1:504308-504327 | None:intergenic | 50.0% | |
| GACAGTCACCTACATGCTAG+AGG | + | chr7_1:504446-504465 | Msa1003340:CDS | 50.0% | |
| CCTTGTGGCCAGCAAAATCT+TGG | - | chr7_1:504719-504738 | None:intergenic | 50.0% | |
| ! | CCAAGATTTTGCTGGCCACA+AGG | + | chr7_1:504716-504735 | Msa1003340:CDS | 50.0% |
| TTTGTGCAGTGGATGACTGC+AGG | + | chr7_1:504871-504890 | Msa1003340:intron | 50.0% | |
| TTGTGCAGTGGATGACTGCA+GGG | + | chr7_1:504872-504891 | Msa1003340:intron | 50.0% | |
| GTGGTCATGAAAGGGGGAAA+AGG | - | chr7_1:506438-506457 | None:intergenic | 50.0% | |
| TGCAGTGGATGACTGCAGGG+AGG | + | chr7_1:504875-504894 | Msa1003340:intron | 60.0% | |
| GCAGTGGATGACTGCAGGGA+GGG | + | chr7_1:504876-504895 | Msa1003340:intron | 60.0% | |
| CAGTGGATGACTGCAGGGAG+GGG | + | chr7_1:504877-504896 | Msa1003340:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 503762 | 506463 | 503762 | ID=Msa1003340;Name=Msa1003340 |
| chr7_1 | mRNA | 503762 | 506463 | 503762 | ID=Msa1003340-mRNA-1;Parent=Msa1003340;Name=Msa1003340-mRNA-1;_AED=0.05;_eAED=0.05;_QI=110|1|1|1|1|1|7|500|292 |
| chr7_1 | exon | 503762 | 503981 | 503762 | ID=Msa1003340-mRNA-1:exon:120;Parent=Msa1003340-mRNA-1 |
| chr7_1 | exon | 504123 | 504172 | 504123 | ID=Msa1003340-mRNA-1:exon:121;Parent=Msa1003340-mRNA-1 |
| chr7_1 | exon | 504297 | 504335 | 504297 | ID=Msa1003340-mRNA-1:exon:122;Parent=Msa1003340-mRNA-1 |
| chr7_1 | exon | 504439 | 504467 | 504439 | ID=Msa1003340-mRNA-1:exon:123;Parent=Msa1003340-mRNA-1 |
| chr7_1 | exon | 504702 | 504764 | 504702 | ID=Msa1003340-mRNA-1:exon:124;Parent=Msa1003340-mRNA-1 |
| chr7_1 | exon | 504880 | 504980 | 504880 | ID=Msa1003340-mRNA-1:exon:125;Parent=Msa1003340-mRNA-1 |
| chr7_1 | exon | 505477 | 506463 | 505477 | ID=Msa1003340-mRNA-1:exon:126;Parent=Msa1003340-mRNA-1 |
| chr7_1 | five_prime_UTR | 503762 | 503871 | 503762 | ID=Msa1003340-mRNA-1:five_prime_utr;Parent=Msa1003340-mRNA-1 |
| chr7_1 | CDS | 503872 | 503981 | 503872 | ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1 |
| chr7_1 | CDS | 504123 | 504172 | 504123 | ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1 |
| chr7_1 | CDS | 504297 | 504335 | 504297 | ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1 |
| chr7_1 | CDS | 504439 | 504467 | 504439 | ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1 |
| chr7_1 | CDS | 504702 | 504764 | 504702 | ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1 |
| chr7_1 | CDS | 504880 | 504980 | 504880 | ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1 |
| chr7_1 | CDS | 505477 | 505963 | 505477 | ID=Msa1003340-mRNA-1:cds;Parent=Msa1003340-mRNA-1 |
| chr7_1 | three_prime_UTR | 505964 | 506463 | 505964 | ID=Msa1003340-mRNA-1:three_prime_utr;Parent=Msa1003340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
