AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434570 MtrunA17_Chr3g0140951 96.599 441 14 1 1 440 1 441 0.0 889
Msa0434570 MtrunA17_Chr3g0140001 41.593 452 228 9 1 436 1 432 1.35e-111 335
Msa0434570 MtrunA17_Chr7g0263751 36.639 363 187 7 54 412 2 325 1.96e-72 231
Msa0434570 MtrunA17_Chr5g0401811 28.041 296 162 9 187 440 151 437 1.33e-24 106
Msa0434570 MtrunA17_Chr4g0053291 27.848 316 179 9 167 440 130 438 1.15e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434570 AT1G27600.2 56.433 443 141 8 1 440 1 394 6.00e-172 488
Msa0434570 AT1G27600.1 56.433 443 141 8 1 440 1 394 6.00e-172 488
Msa0434570 AT2G37090.1 35.638 376 186 12 57 414 4 341 1.08e-70 227
Msa0434570 AT5G67230.1 30.479 292 163 9 187 440 152 441 1.23e-29 120
Msa0434570 AT4G36890.1 28.754 313 171 10 171 440 148 451 1.13e-26 112

Find 136 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTTTGTGCAAGAAAATT+TGG 0.094968 3_2:-87472475 None:intergenic
ATTACAAATAAAATTCTTTA+TGG 0.108209 3_2:-87472074 None:intergenic
CGGAATGACGCCATTAATTT+AGG 0.156462 3_2:-87469223 None:intergenic
AAGCAAGAACAAGGCTATTT+TGG 0.178767 3_2:+87471550 Msa0434570:CDS
TCTTGAACTACATGAATTTC+AGG 0.191022 3_2:-87472294 None:intergenic
TGAAAAGTTTGTCTTATTCT+AGG 0.191970 3_2:+87472177 Msa0434570:three_prime_UTR
ATTTCAATCCCTAGATTTCT+AGG 0.225591 3_2:+87469180 Msa0434570:five_prime_UTR
TCTTCATGTACCTAAATTAA+TGG 0.228573 3_2:+87469213 Msa0434570:exon
TAAAATTGTATGAAATAAAA+AGG 0.277506 3_2:-87468881 None:intergenic
TTCCACCAATTGTTCAATAA+AGG 0.288276 3_2:-87471857 None:intergenic
TCCCTAGATTTCTAGGGTTT+CGG 0.291271 3_2:+87469187 Msa0434570:five_prime_UTR
GGAAATGAATTCTGCTTCTA+TGG 0.295993 3_2:+87469903 Msa0434570:CDS
GCGATTATTGAGAATTGATT+TGG 0.304122 3_2:-87469587 None:intergenic
AGATTTCATGTTGATATGTC+TGG 0.307522 3_2:+87471641 Msa0434570:CDS
ACTGAGTCTAATTGCCGTAT+AGG 0.330564 3_2:-87471725 None:intergenic
GTAGGGCGCCGCCACCGCTT+TGG 0.351660 3_2:-87471695 None:intergenic
CATGAATTTCAGGTTGTTGC+TGG 0.352673 3_2:-87472284 None:intergenic
TGCGTTCTCTGTTTCTTCGT+TGG 0.355661 3_2:+87469448 Msa0434570:CDS
ATCCGAAACCCTAGAAATCT+AGG 0.355859 3_2:-87469189 None:intergenic
GATCAAAAGACAAGTTAAAT+TGG 0.360375 3_2:-87472353 None:intergenic
AACTTTGTGCAAGAAAATTT+GGG 0.366052 3_2:-87472474 None:intergenic
GACCACCTTTATTGAACAAT+TGG 0.367701 3_2:+87471852 Msa0434570:CDS
TAACCTGTTTCTGTCTTGTT+GGG 0.369942 3_2:-87472439 None:intergenic
GTAACCTGTTTCTGTCTTGT+TGG 0.377556 3_2:-87472440 None:intergenic
TTCTTCATTACACAGGTTAC+CGG 0.380960 3_2:+87468997 Msa0434570:five_prime_UTR
TTCTCAAGCATCCAACCCTT+TGG 0.387858 3_2:-87471967 None:intergenic
GCGTTCTCTGTTTCTTCGTT+GGG 0.390433 3_2:+87469449 Msa0434570:CDS
TATCACACACTCTATAGAAT+TGG 0.394651 3_2:-87472028 None:intergenic
ATTGAACATCATAAACTTGA+TGG 0.398247 3_2:+87470042 Msa0434570:CDS
GCCCTACTTCAAATCCTATA+CGG 0.399233 3_2:+87471711 Msa0434570:CDS
TCGTCGTTTCAGAGATTAAT+CGG 0.401703 3_2:+87469367 Msa0434570:CDS
TTCAGACAATCAGAGATATC+AGG 0.403188 3_2:+87470112 Msa0434570:CDS
AAAATAGCCTTGTTCTTGCT+TGG 0.406483 3_2:-87471548 None:intergenic
TTATTAGGTATGTTCCCTTT+CGG 0.411490 3_2:+87469475 Msa0434570:CDS
CACGTCAGCGTCGGTGGTGG+TGG 0.416469 3_2:+87469622 Msa0434570:CDS
CTGTGTAATGAAGAAATTAC+AGG 0.420105 3_2:-87468989 None:intergenic
GGATAAGGATAAGAAGAGTA+AGG 0.423109 3_2:+87469654 Msa0434570:CDS
TTGCCCAACAAGACAGAAAC+AGG 0.429872 3_2:+87472436 Msa0434570:three_prime_UTR
GTTGCAAGAAAATAATGAAT+TGG 0.437417 3_2:+87471911 Msa0434570:CDS
CACGACCGTCACTACATAAA+CGG 0.444334 3_2:+87469268 Msa0434570:CDS
AATTCTATAGAGTGTGTGAT+AGG 0.451944 3_2:+87472030 Msa0434570:three_prime_UTR
AATGGCGAAAAGTTGCTTTC+AGG 0.453308 3_2:+87469425 Msa0434570:CDS
CACAAACTTCCATCTTCAAA+CGG 0.454365 3_2:+87469325 Msa0434570:CDS
AACTGAGATTTAGAAGTTAG+CGG 0.466415 3_2:-87472116 None:intergenic
TCAACGGATGTGAAGGATAG+AGG 0.473437 3_2:+87469988 Msa0434570:CDS
CACAAAGTTATTTGCAGAGG+TGG 0.474603 3_2:+87472488 Msa0434570:three_prime_UTR
CATAATATAGTTTATCCAAA+GGG 0.474680 3_2:+87471952 Msa0434570:CDS
GTTGCTGGGACCCAAAGAAT+GGG 0.475869 3_2:-87472269 None:intergenic
GAGTAGTTTCCGTTTGAAGA+TGG 0.479126 3_2:-87469334 None:intergenic
GATTTCATGTTGATATGTCT+GGG 0.481532 3_2:+87471642 Msa0434570:CDS
TGTGGGATCCAAAGCGGTGG+CGG 0.482823 3_2:+87471687 Msa0434570:CDS
AGATGGAGACGACGGTGAAA+AGG 0.484318 3_2:-87469302 None:intergenic
TGTTGCTGGGACCCAAAGAA+TGG 0.485589 3_2:-87472270 None:intergenic
CACCTTTATTGAACAATTGG+TGG 0.486008 3_2:+87471855 Msa0434570:CDS
TGACGTGGATGACAGCATCT+AGG 0.490726 3_2:-87471993 None:intergenic
GGTGTCTGTGGTTATGAGTA+TGG 0.493038 3_2:-87469046 None:intergenic
TGGTGGTGATGATGAGGATA+AGG 0.495077 3_2:+87469639 Msa0434570:CDS
CTTGGTGCAAGCATGGCGAC+AGG 0.495355 3_2:-87471530 None:intergenic
ATGAATTTCAGGTTGTTGCT+GGG 0.496226 3_2:-87472283 None:intergenic
TGTGGTTATGAGTATGGATT+CGG 0.500729 3_2:-87469040 None:intergenic
GCCGTATAGGATTTGAAGTA+GGG 0.501903 3_2:-87471712 None:intergenic
ATAATGAAAAGCTGAAAGAG+AGG 0.501926 3_2:+87469728 Msa0434570:CDS
CATGAATGAGATTACCGAAA+GGG 0.506123 3_2:-87469489 None:intergenic
TAGTGACGGTCGTGATATGC+CGG 0.506800 3_2:-87469259 None:intergenic
CAACATAGCATTAGTGCCAC+TGG 0.513166 3_2:-87472416 None:intergenic
ATTCCGACGGACGTTATCTC+CGG 0.516727 3_2:+87469240 Msa0434570:CDS
GAAGATGGAAGTTTGTGAGA+TGG 0.518700 3_2:-87469319 None:intergenic
GTTCTTGCTTGGTGCAAGCA+TGG 0.519522 3_2:-87471537 None:intergenic
TGCCGTATAGGATTTGAAGT+AGG 0.523006 3_2:-87471713 None:intergenic
CACACACTCTATAGAATTGG+TGG 0.524728 3_2:-87472025 None:intergenic
TCTCTCTCTTCACACGAAGA+AGG 0.525805 3_2:+87469081 Msa0434570:five_prime_UTR
TTGAACATCATAAACTTGAT+GGG 0.527171 3_2:+87470043 Msa0434570:CDS
TATGGATTCGGTTCGGATCG+AGG 0.530374 3_2:-87469028 None:intergenic
TTTCAATCCCTAGATTTCTA+GGG 0.530676 3_2:+87469181 Msa0434570:five_prime_UTR
AAGCACGTCAGCGTCGGTGG+TGG 0.531902 3_2:+87469619 Msa0434570:CDS
GGGTGTGATGTATAGGCATT+TGG 0.535560 3_2:+87469951 Msa0434570:CDS
GCAATTAGACTCAGTGAAAG+AGG 0.535687 3_2:+87471733 Msa0434570:CDS
ATATAGTTTATCCAAAGGGT+TGG 0.536359 3_2:+87471956 Msa0434570:CDS
TGCAATGGAAGCCAAGTGCT+TGG 0.537309 3_2:+87471584 Msa0434570:CDS
ATTGATTTGGCATCAGATTG+TGG 0.537571 3_2:-87469574 None:intergenic
GATAAGGATAAGAAGAGTAA+GGG 0.537759 3_2:+87469655 Msa0434570:CDS
TTGTATGCCACCCAAGCACT+TGG 0.538534 3_2:-87471595 None:intergenic
GGTGGAAGATGAGAGTCAAA+TGG 0.541257 3_2:+87471873 Msa0434570:CDS
ATCTGAGAAAATTGATATTG+TGG 0.542030 3_2:+87469762 Msa0434570:CDS
TTATGAGTATGGATTCGGTT+CGG 0.543767 3_2:-87469035 None:intergenic
TCAAATGGAAGGTTCGCCAC+CGG 0.544013 3_2:+87471888 Msa0434570:CDS
CACCAATTGTTCAATAAAGG+TGG 0.551699 3_2:-87471854 None:intergenic
CAAATGGAAGGTTCGCCACC+GGG 0.554822 3_2:+87471889 Msa0434570:CDS
GCAATGGAAGCCAAGTGCTT+GGG 0.557871 3_2:+87471585 Msa0434570:CDS
TAATGAAAAGCTGAAAGAGA+GGG 0.563255 3_2:+87469729 Msa0434570:CDS
TAAGAATTCAACGGATGTGA+AGG 0.565155 3_2:+87469981 Msa0434570:CDS
TTGGAGGGTCCGGTATGCAA+TGG 0.566859 3_2:+87471569 Msa0434570:CDS
ACTTGGCTTCCATTGCATAC+CGG 0.569129 3_2:-87471578 None:intergenic
TATAGAGTGTGTGATAGGTA+TGG 0.570408 3_2:+87472035 Msa0434570:three_prime_UTR
TCATCAGAGGAATAAAGCAT+TGG 0.572046 3_2:+87470014 Msa0434570:CDS
ACCACCCATAAAAGCGGCGG+CGG 0.572761 3_2:-87469877 None:intergenic
GAGAGAGAAGACGGTGTCTG+TGG 0.577430 3_2:-87469058 None:intergenic
TGAAAAGCGCGGTTATAAGT+CGG 0.578372 3_2:-87469811 None:intergenic
ATGCGACGATACAATCGAAA+GGG 0.578550 3_2:+87469400 Msa0434570:CDS
CTGTAATTTCTTCATTACAC+AGG 0.579666 3_2:+87468990 Msa0434570:five_prime_UTR
AATTAATGGCGTCATTCCGA+CGG 0.581992 3_2:+87469227 Msa0434570:exon
CATTCAACAGCACAATCCTG+TGG 0.583078 3_2:+87471669 Msa0434570:CDS
CTCAAACATGAACGCTGAGA+AGG 0.583981 3_2:+87469705 Msa0434570:CDS
TCATAATATAGTTTATCCAA+AGG 0.585209 3_2:+87471951 Msa0434570:CDS
GATACAATCGAAAGGGACAA+TGG 0.588516 3_2:+87469407 Msa0434570:CDS
TCCGAAACCCTAGAAATCTA+GGG 0.591119 3_2:-87469188 None:intergenic
TTGCACAAAGTTATTTGCAG+AGG 0.595116 3_2:+87472485 Msa0434570:three_prime_UTR
CGGTGGTGGTGGTGATGATG+AGG 0.599517 3_2:+87469633 Msa0434570:CDS
CAATTAGACTCAGTGAAAGA+GGG 0.602242 3_2:+87471734 Msa0434570:CDS
GCTTGCACCAAGCAAGAACA+AGG 0.606742 3_2:+87471541 Msa0434570:CDS
TCCTGTGGGATCCAAAGCGG+TGG 0.608772 3_2:+87471684 Msa0434570:CDS
GCCACCGCTTTGGATCCCAC+AGG 0.619308 3_2:-87471685 None:intergenic
TCGGATCGAGGTTGAAACTC+CGG 0.621620 3_2:-87469016 None:intergenic
AGGATAGAGGAGTTCATCAG+AGG 0.628437 3_2:+87470001 Msa0434570:CDS
CGTCACTACATAAACGGCGG+TGG 0.628520 3_2:+87469274 Msa0434570:CDS
ATGGAAGCCAAGTGCTTGGG+TGG 0.635295 3_2:+87471588 Msa0434570:CDS
TCCACCACCACCCATAAAAG+CGG 0.639611 3_2:-87469883 None:intergenic
TGGTGGAAGATTACTTGACG+TGG 0.643604 3_2:-87472008 None:intergenic
CATGCGACGATACAATCGAA+AGG 0.645339 3_2:+87469399 Msa0434570:CDS
TGGAGACGACGGTGAAAAGG+CGG 0.646294 3_2:-87469299 None:intergenic
GCTCATCAGTTAGCCACCAG+TGG 0.647141 3_2:+87472400 Msa0434570:three_prime_UTR
CACCGCCGTTTATGTAGTGA+CGG 0.648586 3_2:-87469273 None:intergenic
TCATGAATGAGATTACCGAA+AGG 0.650007 3_2:-87469490 None:intergenic
ATTCAACAGCACAATCCTGT+GGG 0.650054 3_2:+87471670 Msa0434570:CDS
AGAAAATTGATATTGTGGCG+AGG 0.651531 3_2:+87469767 Msa0434570:CDS
TTGCTGGGACCCAAAGAATG+GGG 0.653893 3_2:-87472268 None:intergenic
GAAGATGAGAGTCAAATGGA+AGG 0.657273 3_2:+87471877 Msa0434570:CDS
GGATACTCTTACAATTACAA+CGG 0.657840 3_2:-87472200 None:intergenic
ACCACCACCCATAAAAGCGG+CGG 0.658671 3_2:-87469880 None:intergenic
CATAGCATTAGTGCCACTGG+TGG 0.676902 3_2:-87472413 None:intergenic
TCGTTTCAGAGATTAATCGG+TGG 0.678331 3_2:+87469370 Msa0434570:CDS
GGTGTGTACTAAGAATTCAA+CGG 0.679123 3_2:+87469972 Msa0434570:CDS
ATGCCGGAGATAACGTCCGT+CGG 0.686418 3_2:-87469243 None:intergenic
GACCGTCACTACATAAACGG+CGG 0.698582 3_2:+87469271 Msa0434570:CDS
CAATCCTGTGGGATCCAAAG+CGG 0.703864 3_2:+87471681 Msa0434570:CDS
AGTTTGTGAGATGGAGACGA+CGG 0.778732 3_2:-87469310 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTGTATGAAATAAAA+AGG - chr3_2:87468884-87468903 None:intergenic 10.0%
!! ATATTTGAAAAATTCAAATT+TGG - chr3_2:87471248-87471267 None:intergenic 10.0%
!! ATTACAAATAAAATTCTTTA+TGG - chr3_2:87472077-87472096 None:intergenic 10.0%
!! AATAATAATCCTAAAAAAGT+AGG - chr3_2:87470169-87470188 None:intergenic 15.0%
!!! ACTTTTTTAGGATTATTATT+CGG + chr3_2:87470169-87470188 Msa0434570:intron 15.0%
!! AACTTTAAGTATAAATTCAA+AGG - chr3_2:87470200-87470219 None:intergenic 15.0%
!! AAAAAAAAAACAATCATCAA+GGG - chr3_2:87470427-87470446 None:intergenic 15.0%
!!! TTTTTTCTCTTAAATATCTT+TGG + chr3_2:87470441-87470460 Msa0434570:intron 15.0%
!! ATAAAATTCATACAAAGAAA+CGG - chr3_2:87470473-87470492 None:intergenic 15.0%
!!! TCTTTGTATGAATTTTATAA+CGG + chr3_2:87470475-87470494 Msa0434570:intron 15.0%
!! AAATCAAAACAATACAAATT+AGG - chr3_2:87470759-87470778 None:intergenic 15.0%
!!! ATTTTCCTTTTTTAATGAAA+TGG + chr3_2:87471219-87471238 Msa0434570:intron 15.0%
!! ATTAAATAAATTTGTGTGTT+TGG + chr3_2:87471278-87471297 Msa0434570:intron 15.0%
!!! TTCAGTCATATTTTTTGAAT+AGG + chr3_2:87469830-87469849 Msa0434570:CDS 20.0%
!!! TCATATTTTTTGAATAGGTT+AGG + chr3_2:87469835-87469854 Msa0434570:CDS 20.0%
!!! CATATTTTTTGAATAGGTTA+GGG + chr3_2:87469836-87469855 Msa0434570:CDS 20.0%
!!! TAAAGTTATATTGCTTGTTT+TGG + chr3_2:87470213-87470232 Msa0434570:intron 20.0%
!! GAAAAAAAAAACAATCATCA+AGG - chr3_2:87470428-87470447 None:intergenic 20.0%
!!! CTTTGTATGAATTTTATAAC+GGG + chr3_2:87470476-87470495 Msa0434570:intron 20.0%
!! AATCAATACATAACAATCAA+AGG - chr3_2:87471197-87471216 None:intergenic 20.0%
!! TAAATAAAAGTAATGATAGG+AGG - chr3_2:87471772-87471791 None:intergenic 20.0%
!! GTGTAAATAAAAGTAATGAT+AGG - chr3_2:87471775-87471794 None:intergenic 20.0%
!! TCATAATATAGTTTATCCAA+AGG + chr3_2:87471951-87471970 Msa0434570:CDS 20.0%
!! CATAATATAGTTTATCCAAA+GGG + chr3_2:87471952-87471971 Msa0434570:CDS 20.0%
!!! TGTAGTTCAAGAAATTTTTA+TGG + chr3_2:87472305-87472324 Msa0434570:three_prime_UTR 20.0%
!!! GTAGTTCAAGAAATTTTTAT+GGG + chr3_2:87472306-87472325 Msa0434570:three_prime_UTR 20.0%
! TCTTCATGTACCTAAATTAA+TGG + chr3_2:87469213-87469232 Msa0434570:exon 25.0%
! ATCTGAGAAAATTGATATTG+TGG + chr3_2:87469762-87469781 Msa0434570:CDS 25.0%
! ATTGAACATCATAAACTTGA+TGG + chr3_2:87470042-87470061 Msa0434570:CDS 25.0%
! TTGAACATCATAAACTTGAT+GGG + chr3_2:87470043-87470062 Msa0434570:CDS 25.0%
!!! TGTGTTATACCTACTTTTTT+AGG + chr3_2:87470157-87470176 Msa0434570:intron 25.0%
! AAAACATGCTAATGTAACAA+AGG - chr3_2:87470858-87470877 None:intergenic 25.0%
! GGTGAAAACAAGATTTATAA+AGG - chr3_2:87470891-87470910 None:intergenic 25.0%
! CAGGAAATAAAGTGAAAATA+CGG + chr3_2:87470935-87470954 Msa0434570:intron 25.0%
!!! TTCCCTTTTTAATTAAGTGT+AGG + chr3_2:87471036-87471055 Msa0434570:intron 25.0%
! CTCCTACACTTAATTAAAAA+GGG - chr3_2:87471041-87471060 None:intergenic 25.0%
! GGATTCCATTTCATTAAAAA+AGG - chr3_2:87471227-87471246 None:intergenic 25.0%
!! ATAATACCTTTAACTTTGAC+AGG + chr3_2:87471828-87471847 Msa0434570:intron 25.0%
! GTTGCAAGAAAATAATGAAT+TGG + chr3_2:87471911-87471930 Msa0434570:CDS 25.0%
!! TGAAAAGTTTGTCTTATTCT+AGG + chr3_2:87472177-87472196 Msa0434570:three_prime_UTR 25.0%
!! TTTTTCTCTCTCTCTTTTTT+GGG - chr3_2:87472246-87472265 None:intergenic 25.0%
!! ATTTTTCTCTCTCTCTTTTT+TGG - chr3_2:87472247-87472266 None:intergenic 25.0%
!!! GGTTTGTTATACTTTTTAAC+TGG + chr3_2:87472327-87472346 Msa0434570:three_prime_UTR 25.0%
! GATCAAAAGACAAGTTAAAT+TGG - chr3_2:87472356-87472375 None:intergenic 25.0%
!! TCATGACAATTTTCTCATAT+TGG + chr3_2:87472374-87472393 Msa0434570:three_prime_UTR 25.0%
!! CATGACAATTTTCTCATATT+GGG + chr3_2:87472375-87472394 Msa0434570:three_prime_UTR 25.0%
! AACTTTGTGCAAGAAAATTT+GGG - chr3_2:87472477-87472496 None:intergenic 25.0%
! TAACTTTGTGCAAGAAAATT+TGG - chr3_2:87472478-87472497 None:intergenic 25.0%
!! TATTGAGAAAGATTTTGCAA+AGG + chr3_2:87472534-87472553 Msa0434570:three_prime_UTR 25.0%
CTGTGTAATGAAGAAATTAC+AGG - chr3_2:87468992-87469011 None:intergenic 30.0%
CTGTAATTTCTTCATTACAC+AGG + chr3_2:87468990-87469009 Msa0434570:five_prime_UTR 30.0%
ATTTCAATCCCTAGATTTCT+AGG + chr3_2:87469180-87469199 Msa0434570:five_prime_UTR 30.0%
TTTCAATCCCTAGATTTCTA+GGG + chr3_2:87469181-87469200 Msa0434570:five_prime_UTR 30.0%
! TTCTTCGTTGGGTTTTTATT+AGG + chr3_2:87469460-87469479 Msa0434570:CDS 30.0%
TTATTAGGTATGTTCCCTTT+CGG + chr3_2:87469475-87469494 Msa0434570:CDS 30.0%
GCGATTATTGAGAATTGATT+TGG - chr3_2:87469590-87469609 None:intergenic 30.0%
GATAAGGATAAGAAGAGTAA+GGG + chr3_2:87469655-87469674 Msa0434570:CDS 30.0%
ATAATGAAAAGCTGAAAGAG+AGG + chr3_2:87469728-87469747 Msa0434570:CDS 30.0%
TAATGAAAAGCTGAAAGAGA+GGG + chr3_2:87469729-87469748 Msa0434570:CDS 30.0%
AAAAATATGACTGAAAAGCG+CGG - chr3_2:87469825-87469844 None:intergenic 30.0%
TGCTGAATTGTTGAGAAAAA+CGG + chr3_2:87469930-87469949 Msa0434570:CDS 30.0%
AAAAGTAGGTATAACACAAC+AGG - chr3_2:87470155-87470174 None:intergenic 30.0%
!!! AGTTATATTGCTTGTTTTGG+AGG + chr3_2:87470216-87470235 Msa0434570:intron 30.0%
AAAAAACAATCATCAAGGGA+GGG - chr3_2:87470423-87470442 None:intergenic 30.0%
AAAAAAACAATCATCAAGGG+AGG - chr3_2:87470424-87470443 None:intergenic 30.0%
!! TGTATGAATTTTATAACGGG+CGG + chr3_2:87470479-87470498 Msa0434570:intron 30.0%
AGTTATGAAGGTGACATTTA+CGG - chr3_2:87470616-87470635 None:intergenic 30.0%
TCGAGAATTTATGAAGGAAA+AGG - chr3_2:87470912-87470931 None:intergenic 30.0%
!! CTGTTTTCGAGAATTTATGA+AGG - chr3_2:87470918-87470937 None:intergenic 30.0%
CTTCATAAATTCTCGAAAAC+AGG + chr3_2:87470916-87470935 Msa0434570:intron 30.0%
!!! ACTTTTTTCCCTTCCATTTT+CGG - chr3_2:87471008-87471027 None:intergenic 30.0%
CCTCCTACACTTAATTAAAA+AGG - chr3_2:87471042-87471061 None:intergenic 30.0%
!! CCTTTTTAATTAAGTGTAGG+AGG + chr3_2:87471039-87471058 Msa0434570:intron 30.0%
TTTAATTAAGTGTAGGAGGA+AGG + chr3_2:87471043-87471062 Msa0434570:intron 30.0%
AAAAACACAATTGCCAAAGA+TGG - chr3_2:87471174-87471193 None:intergenic 30.0%
AAGTTAAATGATGTACACAG+AGG - chr3_2:87471402-87471421 None:intergenic 30.0%
TTGGATGACACAATTCATAA+AGG - chr3_2:87471442-87471461 None:intergenic 30.0%
CAGTTCAACATTAGAACATA+GGG - chr3_2:87471485-87471504 None:intergenic 30.0%
!!! AACTGGTTTTATAGTCGTTT+TGG + chr3_2:87471500-87471519 Msa0434570:intron 30.0%
AGATTTCATGTTGATATGTC+TGG + chr3_2:87471641-87471660 Msa0434570:CDS 30.0%
GATTTCATGTTGATATGTCT+GGG + chr3_2:87471642-87471661 Msa0434570:CDS 30.0%
TATCAGATAATACGAATTGC+AGG - chr3_2:87471811-87471830 None:intergenic 30.0%
TTCCACCAATTGTTCAATAA+AGG - chr3_2:87471860-87471879 None:intergenic 30.0%
! TTCATTATTTTCTTGCAACC+CGG - chr3_2:87471910-87471929 None:intergenic 30.0%
ATATAGTTTATCCAAAGGGT+TGG + chr3_2:87471956-87471975 Msa0434570:CDS 30.0%
TATCACACACTCTATAGAAT+TGG - chr3_2:87472031-87472050 None:intergenic 30.0%
AATTCTATAGAGTGTGTGAT+AGG + chr3_2:87472030-87472049 Msa0434570:three_prime_UTR 30.0%
AACTGAGATTTAGAAGTTAG+CGG - chr3_2:87472119-87472138 None:intergenic 30.0%
!!! CTAAATCTCAGTTTTGTTAG+TGG + chr3_2:87472126-87472145 Msa0434570:three_prime_UTR 30.0%
GGATACTCTTACAATTACAA+CGG - chr3_2:87472203-87472222 None:intergenic 30.0%
!! TTTTCTCTCTCTCTTTTTTG+GGG - chr3_2:87472245-87472264 None:intergenic 30.0%
AGAAAAATTCCCCATTCTTT+GGG + chr3_2:87472259-87472278 Msa0434570:three_prime_UTR 30.0%
TCTTGAACTACATGAATTTC+AGG - chr3_2:87472297-87472316 None:intergenic 30.0%
TTCTTCATTACACAGGTTAC+CGG + chr3_2:87468997-87469016 Msa0434570:five_prime_UTR 35.0%
! TTATGAGTATGGATTCGGTT+CGG - chr3_2:87469038-87469057 None:intergenic 35.0%
TGTGGTTATGAGTATGGATT+CGG - chr3_2:87469043-87469062 None:intergenic 35.0%
CACAAACTTCCATCTTCAAA+CGG + chr3_2:87469325-87469344 Msa0434570:CDS 35.0%
TCGTCGTTTCAGAGATTAAT+CGG + chr3_2:87469367-87469386 Msa0434570:CDS 35.0%
CATGAATGAGATTACCGAAA+GGG - chr3_2:87469492-87469511 None:intergenic 35.0%
TCATGAATGAGATTACCGAA+AGG - chr3_2:87469493-87469512 None:intergenic 35.0%
! TTGTTTTCACGATGTTGTTG+AGG - chr3_2:87469520-87469539 None:intergenic 35.0%
!! ATTGATTTGGCATCAGATTG+TGG - chr3_2:87469577-87469596 None:intergenic 35.0%
GGATAAGGATAAGAAGAGTA+AGG + chr3_2:87469654-87469673 Msa0434570:CDS 35.0%
AGAAAATTGATATTGTGGCG+AGG + chr3_2:87469767-87469786 Msa0434570:CDS 35.0%
!!! TTTTTTGAATAGGTTAGGGC+AGG + chr3_2:87469840-87469859 Msa0434570:CDS 35.0%
GGAAATGAATTCTGCTTCTA+TGG + chr3_2:87469903-87469922 Msa0434570:CDS 35.0%
GCTGAATTGTTGAGAAAAAC+GGG + chr3_2:87469931-87469950 Msa0434570:CDS 35.0%
GGTGTGTACTAAGAATTCAA+CGG + chr3_2:87469972-87469991 Msa0434570:CDS 35.0%
TAAGAATTCAACGGATGTGA+AGG + chr3_2:87469981-87470000 Msa0434570:CDS 35.0%
TCATCAGAGGAATAAAGCAT+TGG + chr3_2:87470014-87470033 Msa0434570:CDS 35.0%
TTCAGACAATCAGAGATATC+AGG + chr3_2:87470112-87470131 Msa0434570:CDS 35.0%
!!! TATTGCTTGTTTTGGAGGTA+TGG + chr3_2:87470221-87470240 Msa0434570:intron 35.0%
!! ATCGTTTGCCTTTTGTTTGT+TGG + chr3_2:87470265-87470284 Msa0434570:intron 35.0%
ACCAAAAGCCAACAAACAAA+AGG - chr3_2:87470276-87470295 None:intergenic 35.0%
!! ATTTGGGAGTTTGGGTTTTT+GGG + chr3_2:87470391-87470410 Msa0434570:intron 35.0%
!!! GTATGAATTTTATAACGGGC+GGG + chr3_2:87470480-87470499 Msa0434570:intron 35.0%
CTTGTGAATACCCAAAAACA+AGG - chr3_2:87470804-87470823 None:intergenic 35.0%
! AATGACGTATTGACCGAAAA+TGG + chr3_2:87470992-87471011 Msa0434570:intron 35.0%
GTAGATACAACTCAGAAAAC+TGG - chr3_2:87471316-87471335 None:intergenic 35.0%
! GTTTTCTGAGTTGTATCTAC+TGG + chr3_2:87471316-87471335 Msa0434570:intron 35.0%
AAATGATGTACACAGAGGAT+GGG - chr3_2:87471397-87471416 None:intergenic 35.0%
TAAATGATGTACACAGAGGA+TGG - chr3_2:87471398-87471417 None:intergenic 35.0%
TAGGAACTGAATGAACAAGT+TGG - chr3_2:87471461-87471480 None:intergenic 35.0%
CAACATTAGAACATAGGGTT+AGG - chr3_2:87471480-87471499 None:intergenic 35.0%
CCAGTTCAACATTAGAACAT+AGG - chr3_2:87471486-87471505 None:intergenic 35.0%
CCTATGTTCTAATGTTGAAC+TGG + chr3_2:87471483-87471502 Msa0434570:intron 35.0%
!! TTTATAGTCGTTTTGGCACT+TGG + chr3_2:87471507-87471526 Msa0434570:intron 35.0%
!! AAAATAGCCTTGTTCTTGCT+TGG - chr3_2:87471551-87471570 None:intergenic 35.0%
! AAGCAAGAACAAGGCTATTT+TGG + chr3_2:87471550-87471569 Msa0434570:CDS 35.0%
!! AAGAACAAGGCTATTTTGGA+GGG + chr3_2:87471554-87471573 Msa0434570:CDS 35.0%
CAATTAGACTCAGTGAAAGA+GGG + chr3_2:87471734-87471753 Msa0434570:CDS 35.0%
ATACGAATTGCAGGTGATAT+GGG - chr3_2:87471802-87471821 None:intergenic 35.0%
AATACGAATTGCAGGTGATA+TGG - chr3_2:87471803-87471822 None:intergenic 35.0%
GACCACCTTTATTGAACAAT+TGG + chr3_2:87471852-87471871 Msa0434570:CDS 35.0%
CACCAATTGTTCAATAAAGG+TGG - chr3_2:87471857-87471876 None:intergenic 35.0%
CACCTTTATTGAACAATTGG+TGG + chr3_2:87471855-87471874 Msa0434570:CDS 35.0%
TATAGAGTGTGTGATAGGTA+TGG + chr3_2:87472035-87472054 Msa0434570:three_prime_UTR 35.0%
!!! TTTCTCTCTCTCTTTTTTGG+GGG - chr3_2:87472244-87472263 None:intergenic 35.0%
GAGAAAAATTCCCCATTCTT+TGG + chr3_2:87472258-87472277 Msa0434570:three_prime_UTR 35.0%
!! ATGAATTTCAGGTTGTTGCT+GGG - chr3_2:87472286-87472305 None:intergenic 35.0%
!! TAACCTGTTTCTGTCTTGTT+GGG - chr3_2:87472442-87472461 None:intergenic 35.0%
TTGCACAAAGTTATTTGCAG+AGG + chr3_2:87472485-87472504 Msa0434570:three_prime_UTR 35.0%
!! TCCCTAGATTTCTAGGGTTT+CGG + chr3_2:87469187-87469206 Msa0434570:five_prime_UTR 40.0%
TCCGAAACCCTAGAAATCTA+GGG - chr3_2:87469191-87469210 None:intergenic 40.0%
ATCCGAAACCCTAGAAATCT+AGG - chr3_2:87469192-87469211 None:intergenic 40.0%
CGGAATGACGCCATTAATTT+AGG - chr3_2:87469226-87469245 None:intergenic 40.0%
AATTAATGGCGTCATTCCGA+CGG + chr3_2:87469227-87469246 Msa0434570:exon 40.0%
GAAGATGGAAGTTTGTGAGA+TGG - chr3_2:87469322-87469341 None:intergenic 40.0%
GAGTAGTTTCCGTTTGAAGA+TGG - chr3_2:87469337-87469356 None:intergenic 40.0%
TCGTTTCAGAGATTAATCGG+TGG + chr3_2:87469370-87469389 Msa0434570:CDS 40.0%
ATGCGACGATACAATCGAAA+GGG + chr3_2:87469400-87469419 Msa0434570:CDS 40.0%
GATACAATCGAAAGGGACAA+TGG + chr3_2:87469407-87469426 Msa0434570:CDS 40.0%
! AATGGCGAAAAGTTGCTTTC+AGG + chr3_2:87469425-87469444 Msa0434570:CDS 40.0%
! TGAAAAGCGCGGTTATAAGT+CGG - chr3_2:87469814-87469833 None:intergenic 40.0%
GAAAAACGGGTGTGATGTAT+AGG + chr3_2:87469944-87469963 Msa0434570:CDS 40.0%
!!! GCCTTTTGTTTGTTGGCTTT+TGG + chr3_2:87470272-87470291 Msa0434570:intron 40.0%
TGTCTCAATGCAGTTGTAGT+TGG + chr3_2:87470312-87470331 Msa0434570:intron 40.0%
!!! AGTTGGTACTGTTGGCTTTT+AGG + chr3_2:87470329-87470348 Msa0434570:intron 40.0%
!!! GTTGGTACTGTTGGCTTTTA+GGG + chr3_2:87470330-87470349 Msa0434570:intron 40.0%
ATGTGTAGCATGTAAGTTCG+TGG + chr3_2:87470361-87470380 Msa0434570:intron 40.0%
TGTGTAGCATGTAAGTTCGT+GGG + chr3_2:87470362-87470381 Msa0434570:intron 40.0%
AAGTTCGTGGGATTGTGATT+TGG + chr3_2:87470374-87470393 Msa0434570:intron 40.0%
AGTTCGTGGGATTGTGATTT+GGG + chr3_2:87470375-87470394 Msa0434570:intron 40.0%
! GGATTGTGATTTGGGAGTTT+GGG + chr3_2:87470383-87470402 Msa0434570:intron 40.0%
!! GATTTGGGAGTTTGGGTTTT+TGG + chr3_2:87470390-87470409 Msa0434570:intron 40.0%
CCGTTAGACTACAAGTGTAT+CGG - chr3_2:87470508-87470527 None:intergenic 40.0%
CCGATACACTTGTAGTCTAA+CGG + chr3_2:87470505-87470524 Msa0434570:intron 40.0%
TACACTTGTAGTCTAACGGT+TGG + chr3_2:87470509-87470528 Msa0434570:intron 40.0%
TCTGCATTATCCAATGAGTC+TGG + chr3_2:87470543-87470562 Msa0434570:intron 40.0%
GGTTACAGTTATTGAGGCAT+TGG + chr3_2:87470567-87470586 Msa0434570:intron 40.0%
!! TACAGTTATTGAGGCATTGG+TGG + chr3_2:87470570-87470589 Msa0434570:intron 40.0%
TTGTCGGTAGCAAGTTATGA+AGG - chr3_2:87470628-87470647 None:intergenic 40.0%
!! ATAACTTGCTACCGACAAGT+TGG + chr3_2:87470630-87470649 Msa0434570:intron 40.0%
CTCAAGAACAACCAACTTGT+CGG - chr3_2:87470644-87470663 None:intergenic 40.0%
!! ACAAGTTGGTTGTTCTTGAG+AGG + chr3_2:87470644-87470663 Msa0434570:intron 40.0%
GTTCTTGAGAGGAGTTAATG+TGG + chr3_2:87470655-87470674 Msa0434570:intron 40.0%
GTTAATGTGGCCGAAATTTG+CGG + chr3_2:87470668-87470687 Msa0434570:intron 40.0%
!!! TGACTAATGCGCCTTGTTTT+TGG + chr3_2:87470790-87470809 Msa0434570:intron 40.0%
!!! GACTAATGCGCCTTGTTTTT+GGG + chr3_2:87470791-87470810 Msa0434570:intron 40.0%
! ACGTATTGACCGAAAATGGA+AGG + chr3_2:87470996-87471015 Msa0434570:intron 40.0%
! CGTATTGACCGAAAATGGAA+GGG + chr3_2:87470997-87471016 Msa0434570:intron 40.0%
ATTAAGTGTAGGAGGAAGGT+AGG + chr3_2:87471047-87471066 Msa0434570:intron 40.0%
TGAACCTTCATTGAAGCATG+TGG - chr3_2:87471100-87471119 None:intergenic 40.0%
GCTTCAATGAAGGTTCATAG+TGG + chr3_2:87471103-87471122 Msa0434570:intron 40.0%
ACACAATTGCCAAAGATGGT+TGG - chr3_2:87471170-87471189 None:intergenic 40.0%
!! CAAGAACAAGGCTATTTTGG+AGG + chr3_2:87471553-87471572 Msa0434570:CDS 40.0%
ATTCAACAGCACAATCCTGT+GGG + chr3_2:87471670-87471689 Msa0434570:CDS 40.0%
GCCCTACTTCAAATCCTATA+CGG + chr3_2:87471711-87471730 Msa0434570:CDS 40.0%
! GCCGTATAGGATTTGAAGTA+GGG - chr3_2:87471715-87471734 None:intergenic 40.0%
! TGCCGTATAGGATTTGAAGT+AGG - chr3_2:87471716-87471735 None:intergenic 40.0%
ACTGAGTCTAATTGCCGTAT+AGG - chr3_2:87471728-87471747 None:intergenic 40.0%
GCAATTAGACTCAGTGAAAG+AGG + chr3_2:87471733-87471752 Msa0434570:CDS 40.0%
TACGAATTGCAGGTGATATG+GGG - chr3_2:87471801-87471820 None:intergenic 40.0%
TGGTCTCCTGTCAAAGTTAA+AGG - chr3_2:87471837-87471856 None:intergenic 40.0%
GAAGATGAGAGTCAAATGGA+AGG + chr3_2:87471877-87471896 Msa0434570:CDS 40.0%
! ATTATTTTCTTGCAACCCGG+TGG - chr3_2:87471907-87471926 None:intergenic 40.0%
CACACACTCTATAGAATTGG+TGG - chr3_2:87472028-87472047 None:intergenic 40.0%
!! CATGAATTTCAGGTTGTTGC+TGG - chr3_2:87472287-87472306 None:intergenic 40.0%
!! GTAACCTGTTTCTGTCTTGT+TGG - chr3_2:87472443-87472462 None:intergenic 40.0%
CACAAAGTTATTTGCAGAGG+TGG + chr3_2:87472488-87472507 Msa0434570:three_prime_UTR 40.0%
GGTGTCTGTGGTTATGAGTA+TGG - chr3_2:87469049-87469068 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAAGA+CGG - chr3_2:87469070-87469089 None:intergenic 45.0%
TCTCTCTCTTCACACGAAGA+AGG + chr3_2:87469081-87469100 Msa0434570:five_prime_UTR 45.0%
CACGACCGTCACTACATAAA+CGG + chr3_2:87469268-87469287 Msa0434570:CDS 45.0%
AGTTTGTGAGATGGAGACGA+CGG - chr3_2:87469313-87469332 None:intergenic 45.0%
CATGCGACGATACAATCGAA+AGG + chr3_2:87469399-87469418 Msa0434570:CDS 45.0%
! TGCGTTCTCTGTTTCTTCGT+TGG + chr3_2:87469448-87469467 Msa0434570:CDS 45.0%
! GCGTTCTCTGTTTCTTCGTT+GGG + chr3_2:87469449-87469468 Msa0434570:CDS 45.0%
! TTGAAAAAGCACGTCAGCGT+CGG + chr3_2:87469613-87469632 Msa0434570:CDS 45.0%
! TGGTGGTGATGATGAGGATA+AGG + chr3_2:87469639-87469658 Msa0434570:CDS 45.0%
CTCAAACATGAACGCTGAGA+AGG + chr3_2:87469705-87469724 Msa0434570:CDS 45.0%
! ATAGGTTAGGGCAGGTTTTG+AGG + chr3_2:87469848-87469867 Msa0434570:CDS 45.0%
GGGTGTGATGTATAGGCATT+TGG + chr3_2:87469951-87469970 Msa0434570:CDS 45.0%
TCAACGGATGTGAAGGATAG+AGG + chr3_2:87469988-87470007 Msa0434570:CDS 45.0%
AGGATAGAGGAGTTCATCAG+AGG + chr3_2:87470001-87470020 Msa0434570:CDS 45.0%
! GCAGTTGTAGTTGGTACTGT+TGG + chr3_2:87470321-87470340 Msa0434570:intron 45.0%
! GGGATTGTGATTTGGGAGTT+TGG + chr3_2:87470382-87470401 Msa0434570:intron 45.0%
GCATTATCCAATGAGTCTGG+CGG + chr3_2:87470546-87470565 Msa0434570:intron 45.0%
TCTGGCGGTTACAGTTATTG+AGG + chr3_2:87470561-87470580 Msa0434570:intron 45.0%
GCCGAAATTTGCGGTTCTTT+GGG + chr3_2:87470677-87470696 Msa0434570:intron 45.0%
CCCCAAAGAACCGCAAATTT+CGG - chr3_2:87470681-87470700 None:intergenic 45.0%
CCGAAATTTGCGGTTCTTTG+GGG + chr3_2:87470678-87470697 Msa0434570:intron 45.0%
CGAAATTTGCGGTTCTTTGG+GGG + chr3_2:87470679-87470698 Msa0434570:intron 45.0%
! GGTTCTTTGGGGGATCAATT+CGG + chr3_2:87470689-87470708 Msa0434570:intron 45.0%
! GTTCTTTGGGGGATCAATTC+GGG + chr3_2:87470690-87470709 Msa0434570:intron 45.0%
! TTCTTTGGGGGATCAATTCG+GGG + chr3_2:87470691-87470710 Msa0434570:intron 45.0%
! TCGGGGTTTTTACATACGCA+AGG + chr3_2:87470708-87470727 Msa0434570:intron 45.0%
TGGGTATTCACAAGCTTGTC+TGG + chr3_2:87470810-87470829 Msa0434570:intron 45.0%
GGGTATTCACAAGCTTGTCT+GGG + chr3_2:87470811-87470830 Msa0434570:intron 45.0%
ACTTGGCTTCCATTGCATAC+CGG - chr3_2:87471581-87471600 None:intergenic 45.0%
CATTCAACAGCACAATCCTG+TGG + chr3_2:87471669-87471688 Msa0434570:CDS 45.0%
! CTCAGTGAAAGAGGGTTTTC+AGG + chr3_2:87471742-87471761 Msa0434570:CDS 45.0%
ACGAATTGCAGGTGATATGG+GGG - chr3_2:87471800-87471819 None:intergenic 45.0%
GGTGGAAGATGAGAGTCAAA+TGG + chr3_2:87471873-87471892 Msa0434570:CDS 45.0%
TTCTCAAGCATCCAACCCTT+TGG - chr3_2:87471970-87471989 None:intergenic 45.0%
TGGTGGAAGATTACTTGACG+TGG - chr3_2:87472011-87472030 None:intergenic 45.0%
!!! TCTCTCTCTTTTTTGGGGGA+GGG - chr3_2:87472240-87472259 None:intergenic 45.0%
CAACATAGCATTAGTGCCAC+TGG - chr3_2:87472419-87472438 None:intergenic 45.0%
TTGCCCAACAAGACAGAAAC+AGG + chr3_2:87472436-87472455 Msa0434570:three_prime_UTR 45.0%
TCGGATCGAGGTTGAAACTC+CGG - chr3_2:87469019-87469038 None:intergenic 50.0%
!! TATGGATTCGGTTCGGATCG+AGG - chr3_2:87469031-87469050 None:intergenic 50.0%
ATTCCGACGGACGTTATCTC+CGG + chr3_2:87469240-87469259 Msa0434570:CDS 50.0%
TAGTGACGGTCGTGATATGC+CGG - chr3_2:87469262-87469281 None:intergenic 50.0%
GACCGTCACTACATAAACGG+CGG + chr3_2:87469271-87469290 Msa0434570:CDS 50.0%
CACCGCCGTTTATGTAGTGA+CGG - chr3_2:87469276-87469295 None:intergenic 50.0%
AGATGGAGACGACGGTGAAA+AGG - chr3_2:87469305-87469324 None:intergenic 50.0%
!!! GTTAGGGCAGGTTTTGAGGT+TGG + chr3_2:87469852-87469871 Msa0434570:CDS 50.0%
TCCACCACCACCCATAAAAG+CGG - chr3_2:87469886-87469905 None:intergenic 50.0%
ACTGTAACCGCCAGACTCAT+TGG - chr3_2:87470556-87470575 None:intergenic 50.0%
ACGGCGCACAAGTGTTTAAC+TGG - chr3_2:87470597-87470616 None:intergenic 50.0%
GGCCGAAATTTGCGGTTCTT+TGG + chr3_2:87470676-87470695 Msa0434570:intron 50.0%
CAGGCCACATGCTTCAATGA+AGG + chr3_2:87471093-87471112 Msa0434570:intron 50.0%
! CCAAAGATGGTTGGCTCAGT+AGG - chr3_2:87471161-87471180 None:intergenic 50.0%
CCTACTGAGCCAACCATCTT+TGG + chr3_2:87471158-87471177 Msa0434570:intron 50.0%
!! GTTCTTGCTTGGTGCAAGCA+TGG - chr3_2:87471540-87471559 None:intergenic 50.0%
GCTTGCACCAAGCAAGAACA+AGG + chr3_2:87471541-87471560 Msa0434570:CDS 50.0%
!! CAAGGCTATTTTGGAGGGTC+CGG + chr3_2:87471559-87471578 Msa0434570:CDS 50.0%
TGCAATGGAAGCCAAGTGCT+TGG + chr3_2:87471584-87471603 Msa0434570:CDS 50.0%
GCAATGGAAGCCAAGTGCTT+GGG + chr3_2:87471585-87471604 Msa0434570:CDS 50.0%
TTGTATGCCACCCAAGCACT+TGG - chr3_2:87471598-87471617 None:intergenic 50.0%
CAATCCTGTGGGATCCAAAG+CGG + chr3_2:87471681-87471700 Msa0434570:CDS 50.0%
AATTGCAGGTGATATGGGGG+TGG - chr3_2:87471797-87471816 None:intergenic 50.0%
TCAAATGGAAGGTTCGCCAC+CGG + chr3_2:87471888-87471907 Msa0434570:CDS 50.0%
TGACGTGGATGACAGCATCT+AGG - chr3_2:87471996-87472015 None:intergenic 50.0%
!!! TCTCTCTTTTTTGGGGGAGG+GGG - chr3_2:87472238-87472257 None:intergenic 50.0%
!!! CTCTCTCTTTTTTGGGGGAG+GGG - chr3_2:87472239-87472258 None:intergenic 50.0%
!!! CTCTCTCTCTTTTTTGGGGG+AGG - chr3_2:87472241-87472260 None:intergenic 50.0%
TTGCTGGGACCCAAAGAATG+GGG - chr3_2:87472271-87472290 None:intergenic 50.0%
GTTGCTGGGACCCAAAGAAT+GGG - chr3_2:87472272-87472291 None:intergenic 50.0%
TGTTGCTGGGACCCAAAGAA+TGG - chr3_2:87472273-87472292 None:intergenic 50.0%
! CATAGCATTAGTGCCACTGG+TGG - chr3_2:87472416-87472435 None:intergenic 50.0%
GAGAGAGAAGACGGTGTCTG+TGG - chr3_2:87469061-87469080 None:intergenic 55.0%
ATGCCGGAGATAACGTCCGT+CGG - chr3_2:87469246-87469265 None:intergenic 55.0%
CGTCACTACATAAACGGCGG+TGG + chr3_2:87469274-87469293 Msa0434570:CDS 55.0%
TGGAGACGACGGTGAAAAGG+CGG - chr3_2:87469302-87469321 None:intergenic 55.0%
! AAAAAGCACGTCAGCGTCGG+TGG + chr3_2:87469616-87469635 Msa0434570:CDS 55.0%
ACCACCACCCATAAAAGCGG+CGG - chr3_2:87469883-87469902 None:intergenic 55.0%
ATGTGGCCTGTCTCGACCAT+GGG - chr3_2:87471083-87471102 None:intergenic 55.0%
TTGGAGGGTCCGGTATGCAA+TGG + chr3_2:87471569-87471588 Msa0434570:CDS 55.0%
ATGGAAGCCAAGTGCTTGGG+TGG + chr3_2:87471588-87471607 Msa0434570:CDS 55.0%
CAAATGGAAGGTTCGCCACC+GGG + chr3_2:87471889-87471908 Msa0434570:CDS 55.0%
!!! TTTTTTGGGGGAGGGGGCTA+AGG - chr3_2:87472232-87472251 None:intergenic 55.0%
GCTCATCAGTTAGCCACCAG+TGG + chr3_2:87472400-87472419 Msa0434570:three_prime_UTR 55.0%
!! CGGTGGTGGTGGTGATGATG+AGG + chr3_2:87469633-87469652 Msa0434570:CDS 60.0%
ACCACCCATAAAAGCGGCGG+CGG - chr3_2:87469880-87469899 None:intergenic 60.0%
!!! GCCGCTTTTATGGGTGGTGG+TGG + chr3_2:87469882-87469901 Msa0434570:CDS 60.0%
! GGTAGGTTGACCCACTCCCA+TGG + chr3_2:87471064-87471083 Msa0434570:intron 60.0%
CCTGTCTCGACCATGGGAGT+GGG - chr3_2:87471077-87471096 None:intergenic 60.0%
CATGTGGCCTGTCTCGACCA+TGG - chr3_2:87471084-87471103 None:intergenic 60.0%
! CTTGGTGCAAGCATGGCGAC+AGG - chr3_2:87471533-87471552 None:intergenic 60.0%
TCCTGTGGGATCCAAAGCGG+TGG + chr3_2:87471684-87471703 Msa0434570:CDS 60.0%
TGTGGGATCCAAAGCGGTGG+CGG + chr3_2:87471687-87471706 Msa0434570:CDS 60.0%
!! AAGCACGTCAGCGTCGGTGG+TGG + chr3_2:87469619-87469638 Msa0434570:CDS 65.0%
!!! TGGTGCCGCCGCCGCTTTTA+TGG + chr3_2:87469872-87469891 Msa0434570:CDS 65.0%
!!! GGTGCCGCCGCCGCTTTTAT+GGG + chr3_2:87469873-87469892 Msa0434570:CDS 65.0%
!!! GCCGCCGCTTTTATGGGTGG+TGG + chr3_2:87469879-87469898 Msa0434570:CDS 65.0%
CCCACTCCCATGGTCGAGAC+AGG + chr3_2:87471074-87471093 Msa0434570:intron 65.0%
GCCTGTCTCGACCATGGGAG+TGG - chr3_2:87471078-87471097 None:intergenic 65.0%
! GCCACCGCTTTGGATCCCAC+AGG - chr3_2:87471688-87471707 None:intergenic 65.0%
GGGAGGGGGCTAAGGATGAC+GGG - chr3_2:87472224-87472243 None:intergenic 65.0%
GGGGAGGGGGCTAAGGATGA+CGG - chr3_2:87472225-87472244 None:intergenic 65.0%
!! CACGTCAGCGTCGGTGGTGG+TGG + chr3_2:87469622-87469641 Msa0434570:CDS 70.0%
!!! GCCGCCGCCGCTTTTATGGG+TGG + chr3_2:87469876-87469895 Msa0434570:CDS 70.0%
!! GTAGGGCGCCGCCACCGCTT+TGG - chr3_2:87471698-87471717 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 87468823 87472611 87468823 ID=Msa0434570;Name=Msa0434570
chr3_2 mRNA 87468823 87472611 87468823 ID=Msa0434570-mRNA-1;Parent=Msa0434570;Name=Msa0434570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=409|1|1|1|1|1|3|591|440
chr3_2 exon 87468823 87470133 87468823 ID=Msa0434570-mRNA-1:exon:25504;Parent=Msa0434570-mRNA-1
chr3_2 exon 87471514 87471763 87471514 ID=Msa0434570-mRNA-1:exon:25505;Parent=Msa0434570-mRNA-1
chr3_2 exon 87471850 87472611 87471850 ID=Msa0434570-mRNA-1:exon:25506;Parent=Msa0434570-mRNA-1
chr3_2 five_prime_UTR 87468823 87469231 87468823 ID=Msa0434570-mRNA-1:five_prime_utr;Parent=Msa0434570-mRNA-1
chr3_2 CDS 87469232 87470133 87469232 ID=Msa0434570-mRNA-1:cds;Parent=Msa0434570-mRNA-1
chr3_2 CDS 87471514 87471763 87471514 ID=Msa0434570-mRNA-1:cds;Parent=Msa0434570-mRNA-1
chr3_2 CDS 87471850 87472020 87471850 ID=Msa0434570-mRNA-1:cds;Parent=Msa0434570-mRNA-1
chr3_2 three_prime_UTR 87472021 87472611 87472021 ID=Msa0434570-mRNA-1:three_prime_utr;Parent=Msa0434570-mRNA-1
Gene Sequence

>Msa0434570

ATGGCGTCATTCCGACGGACGTTATCTCCGGCATATCACGACCGTCACTACATAAACGGCGGTGGTGCCGCCTTTTCACCGTCGTCTCCATCTCACAAACTTCCATCTTCAAACGGAAACTACTCTGCAATAGCTTCGTCGTTTCAGAGATTAATCGGTGGCGTTTTCATGCGACGATACAATCGAAAGGGACAATGGCGAAAAGTTGCTTTCAGGTGCGTTCTCTGTTTCTTCGTTGGGTTTTTATTAGGTATGTTCCCTTTCGGTAATCTCATTCATGAAATTCCTCAACAACATCGTGAAAACAACAACAATATCATTGCTTTTGATATCAATAAAACTCCACAATCTGATGCCAAATCAATTCTCAATAATCGCGTTTTGAAAAAGCACGTCAGCGTCGGTGGTGGTGGTGATGATGAGGATAAGGATAAGAAGAGTAAGGGTTTTTTGATTGAACAAGTAAGTTTGAGCTCAAACATGAACGCTGAGAAGGATAATGAAAAGCTGAAAGAGAGGGAATTGATCGAATCTGAGAAAATTGATATTGTGGCGAGGAAGCAATTGATTATTGTGACACCGACTTATAACCGCGCTTTTCAGTCATATTTTTTGAATAGGTTAGGGCAGGTTTTGAGGTTGGTGCCGCCGCCGCTTTTATGGGTGGTGGTGGAAATGAATTCTGCTTCTATGGAAACTGCTGAATTGTTGAGAAAAACGGGTGTGATGTATAGGCATTTGGTGTGTACTAAGAATTCAACGGATGTGAAGGATAGAGGAGTTCATCAGAGGAATAAAGCATTGGAGCATATTGAACATCATAAACTTGATGGGATTGTTTACTTTGCTGATGATGATAATGTATATTCTCTTGAATTGTTTCAGACAATCAGAGATATCAGTCGTTTTGGCACTTGGCCTGTCGCCATGCTTGCACCAAGCAAGAACAAGGCTATTTTGGAGGGTCCGGTATGCAATGGAAGCCAAGTGCTTGGGTGGCATACAAATGAGAAAAGTAAAAGACTTCGAAGATTTCATGTTGATATGTCTGGGTTTGCATTCAACAGCACAATCCTGTGGGATCCAAAGCGGTGGCGGCGCCCTACTTCAAATCCTATACGGCAATTAGACTCAGTGAAAGAGGGTTTTCAGGAGACCACCTTTATTGAACAATTGGTGGAAGATGAGAGTCAAATGGAAGGTTCGCCACCGGGTTGCAAGAAAATAATGAATTGGCATCTTCATTTGAATGTTCATAATATAGTTTATCCAAAGGGTTGGATGCTTGAGAAAAACCTAGATGCTGTCATCCACGTCAAGTAA

Protein sequence

>Msa0434570

MASFRRTLSPAYHDRHYINGGGAAFSPSSPSHKLPSSNGNYSAIASSFQRLIGGVFMRRYNRKGQWRKVAFRCVLCFFVGFLLGMFPFGNLIHEIPQQHRENNNNIIAFDINKTPQSDAKSILNNRVLKKHVSVGGGGDDEDKDKKSKGFLIEQVSLSSNMNAEKDNEKLKERELIESEKIDIVARKQLIIVTPTYNRAFQSYFLNRLGQVLRLVPPPLLWVVVEMNSASMETAELLRKTGVMYRHLVCTKNSTDVKDRGVHQRNKALEHIEHHKLDGIVYFADDDNVYSLELFQTIRDISRFGTWPVAMLAPSKNKAILEGPVCNGSQVLGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPTSNPIRQLDSVKEGFQETTFIEQLVEDESQMEGSPPGCKKIMNWHLHLNVHNIVYPKGWMLEKNLDAVIHVK*