Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538800 | XP_003605403.4 | 95.756 | 542 | 22 | 1 | 17 | 558 | 47 | 587 | 0.0 | 1054 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538800 | sp|F4I8I0|SUN4_ARATH | 47.737 | 486 | 235 | 5 | 99 | 579 | 125 | 596 | 1.72e-145 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538800 | I3S0K2 | 95.756 | 542 | 22 | 1 | 17 | 558 | 47 | 587 | 0.0 | 1054 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003630 | Msa0538800 | 0.809799 | 1.582682e-50 | -8.615850e-47 |
| Msa0005270 | Msa0538800 | 0.807899 | 4.034778e-50 | -8.615850e-47 |
| Msa0010770 | Msa0538800 | 0.821804 | 3.323658e-53 | -8.615850e-47 |
| Msa0041690 | Msa0538800 | 0.807323 | 5.347577e-50 | -8.615850e-47 |
| Msa0057590 | Msa0538800 | 0.806611 | 7.562096e-50 | -8.615850e-47 |
| Msa0058310 | Msa0538800 | 0.809973 | 1.451609e-50 | -8.615850e-47 |
| Msa0059890 | Msa0538800 | 0.805663 | 1.197512e-49 | -8.615850e-47 |
| Msa0071250 | Msa0538800 | 0.806809 | 6.870065e-50 | -8.615850e-47 |
| Msa0096580 | Msa0538800 | 0.804863 | 1.761036e-49 | -8.615850e-47 |
| Msa0097950 | Msa0538800 | 0.832004 | 1.210576e-55 | -8.615850e-47 |
| Msa0100160 | Msa0538800 | 0.801486 | 8.803501e-49 | -8.615850e-47 |
| Msa0105520 | Msa0538800 | 0.813805 | 2.125750e-51 | -8.615850e-47 |
| Msa0106620 | Msa0538800 | 0.817499 | 3.195111e-52 | -8.615850e-47 |
| Msa0106710 | Msa0538800 | 0.802979 | 4.337441e-49 | -8.615850e-47 |
| Msa0136120 | Msa0538800 | 0.806638 | 7.464886e-50 | -8.615850e-47 |
| Msa0138640 | Msa0538800 | 0.808253 | 3.391696e-50 | -8.615850e-47 |
| Msa0143850 | Msa0538800 | 0.800750 | 1.244901e-48 | -8.615850e-47 |
| Msa0145740 | Msa0538800 | 0.810781 | 9.717899e-51 | -8.615850e-47 |
| Msa0177210 | Msa0538800 | 0.810755 | 9.842409e-51 | -8.615850e-47 |
| Msa0183420 | Msa0538800 | 0.800802 | 1.215041e-48 | -8.615850e-47 |
| Msa0185510 | Msa0538800 | 0.812268 | 4.617771e-51 | -8.615850e-47 |
| Msa0187030 | Msa0538800 | 0.807680 | 4.491188e-50 | -8.615850e-47 |
| Msa0192640 | Msa0538800 | 0.804397 | 2.203510e-49 | -8.615850e-47 |
| Msa0193540 | Msa0538800 | 0.812400 | 4.321971e-51 | -8.615850e-47 |
| Msa0202090 | Msa0538800 | 0.800289 | 1.545652e-48 | -8.615850e-47 |
| Msa0205010 | Msa0538800 | 0.803762 | 2.986354e-49 | -8.615850e-47 |
| Msa0207030 | Msa0538800 | 0.814843 | 1.253329e-51 | -8.615850e-47 |
| Msa0225640 | Msa0538800 | 0.817055 | 4.020227e-52 | -8.615850e-47 |
| Msa0235470 | Msa0538800 | 0.814829 | 1.261972e-51 | -8.615850e-47 |
| Msa0381000 | Msa0538800 | 0.841010 | 6.156689e-58 | -8.615850e-47 |
| Msa0381080 | Msa0538800 | 0.837505 | 4.996656e-57 | -8.615850e-47 |
| Msa0389910 | Msa0538800 | 0.825084 | 5.684182e-54 | -8.615850e-47 |
| Msa0397820 | Msa0538800 | 0.844999 | 5.338480e-59 | -8.615850e-47 |
| Msa0411410 | Msa0538800 | 0.800690 | 1.280402e-48 | -8.615850e-47 |
| Msa0413730 | Msa0538800 | 0.803014 | 4.266630e-49 | -8.615850e-47 |
| Msa0430870 | Msa0538800 | 0.834895 | 2.299737e-56 | -8.615850e-47 |
| Msa0437400 | Msa0538800 | 0.808883 | 2.488065e-50 | -8.615850e-47 |
| Msa0461590 | Msa0538800 | 0.803328 | 3.674195e-49 | -8.615850e-47 |
| Msa0474700 | Msa0538800 | 0.838424 | 2.899605e-57 | -8.615850e-47 |
| Msa0244980 | Msa0538800 | 0.806967 | 6.361036e-50 | -8.615850e-47 |
| Msa0274630 | Msa0538800 | 0.816100 | 6.582380e-52 | -8.615850e-47 |
| Msa0285330 | Msa0538800 | 0.808251 | 3.394563e-50 | -8.615850e-47 |
| Msa0312910 | Msa0538800 | 0.801135 | 1.038652e-48 | -8.615850e-47 |
| Msa0314060 | Msa0538800 | 0.809943 | 1.473903e-50 | -8.615850e-47 |
| Msa0321690 | Msa0538800 | 0.813052 | 3.111501e-51 | -8.615850e-47 |
| Msa0324240 | Msa0538800 | 0.822132 | 2.788964e-53 | -8.615850e-47 |
| Msa0363060 | Msa0538800 | 0.803022 | 4.251166e-49 | -8.615850e-47 |
| Msa0484840 | Msa0538800 | 0.802118 | 6.528279e-49 | -8.615850e-47 |
| Msa0505380 | Msa0538800 | 0.802165 | 6.385620e-49 | -8.615850e-47 |
| Msa0517640 | Msa0538800 | 0.800927 | 1.145282e-48 | -8.615850e-47 |
| Msa0523050 | Msa0538800 | 0.828829 | 7.230998e-55 | -8.615850e-47 |
| Msa0526020 | Msa0538800 | 0.801651 | 8.141127e-49 | -8.615850e-47 |
| Msa0531250 | Msa0538800 | 0.802004 | 6.892445e-49 | -8.615850e-47 |
| Msa0538800 | Msa0546570 | 0.806491 | 8.016782e-50 | -8.615850e-47 |
| Msa0538800 | Msa0588090 | 0.810911 | 9.108075e-51 | -8.615850e-47 |
| Msa0538800 | Msa0594800 | 0.802058 | 6.716598e-49 | -8.615850e-47 |
| Msa0538800 | Msa0628420 | 0.800344 | 1.506480e-48 | -8.615850e-47 |
| Msa0538800 | Msa0634490 | 0.821513 | 3.880446e-53 | -8.615850e-47 |
| Msa0538800 | Msa0643320 | 0.808972 | 2.381520e-50 | -8.615850e-47 |
| Msa0538800 | Msa0673270 | 0.904035 | 1.868538e-79 | -8.615850e-47 |
| Msa0538800 | Msa0682090 | 0.804467 | 2.130463e-49 | -8.615850e-47 |
| Msa0538800 | Msa0682140 | 0.809531 | 1.806834e-50 | -8.615850e-47 |
| Msa0538800 | Msa0683140 | 0.812272 | 4.607547e-51 | -8.615850e-47 |
| Msa0538800 | Msa0709160 | 0.802339 | 5.880619e-49 | -8.615850e-47 |
| Msa0538800 | Msa0712560 | 0.842482 | 2.516551e-58 | -8.615850e-47 |
| Msa0538800 | Msa0721280 | 0.811691 | 6.168741e-51 | -8.615850e-47 |
| Msa0538800 | Msa0744090 | 0.805302 | 1.425276e-49 | -8.615850e-47 |
| Msa0538800 | Msa0744100 | 0.822008 | 2.980950e-53 | -8.615850e-47 |
| Msa0538800 | Msa0788110 | 0.825585 | 4.326752e-54 | -8.615850e-47 |
| Msa0538800 | Msa0788120 | 0.825995 | 3.458111e-54 | -8.615850e-47 |
| Msa0538800 | Msa0791090 | 0.816640 | 4.982403e-52 | -8.615850e-47 |
| Msa0538800 | Msa0796440 | 0.806269 | 8.927862e-50 | -8.615850e-47 |
| Msa0538800 | Msa0811040 | 0.807685 | 4.478816e-50 | -8.615850e-47 |
| Msa0538800 | Msa0825270 | 0.822212 | 2.673207e-53 | -8.615850e-47 |
| Msa0538800 | Msa0825280 | 0.808385 | 3.179126e-50 | -8.615850e-47 |
| Msa0538800 | Msa0830390 | 0.812975 | 3.233668e-51 | -8.615850e-47 |
| Msa0538800 | Msa0851470 | 0.811514 | 6.739981e-51 | -8.615850e-47 |
| Msa0538800 | Msa0859180 | 0.808048 | 3.750935e-50 | -8.615850e-47 |
| Msa0538800 | Msa0864420 | 0.809468 | 1.863994e-50 | -8.615850e-47 |
| Msa0538800 | Msa0866400 | 0.809108 | 2.227475e-50 | -8.615850e-47 |
| Msa0538800 | Msa0965020 | 0.812455 | 4.203407e-51 | -8.615850e-47 |
| Msa0538800 | Msa0981430 | 0.840855 | 6.761078e-58 | -8.615850e-47 |
| Msa0538800 | Msa0990580 | 0.800204 | 1.608264e-48 | -8.615850e-47 |
| Msa0538800 | Msa1003340 | 0.816397 | 5.648730e-52 | -8.615850e-47 |
| Msa0538800 | Msa1008750 | 0.805808 | 1.116266e-49 | -8.615850e-47 |
| Msa0538800 | Msa1046440 | 0.800672 | 1.291590e-48 | -8.615850e-47 |
| Msa0538800 | Msa1050700 | 0.806246 | 9.028273e-50 | -8.615850e-47 |
| Msa0538800 | Msa1053200 | 0.824805 | 6.615943e-54 | -8.615850e-47 |
| Msa0538800 | Msa1063420 | 0.823842 | 1.114332e-53 | -8.615850e-47 |
| Msa0538800 | Msa1095620 | 0.813147 | 2.964848e-51 | -8.615850e-47 |
| Msa0538800 | Msa1096060 | 0.812681 | 3.751917e-51 | -8.615850e-47 |
| Msa0538800 | Msa1126240 | 0.820200 | 7.778729e-53 | -8.615850e-47 |
| Msa0538800 | Msa1130530 | 0.805766 | 1.139291e-49 | -8.615850e-47 |
| Msa0538800 | Msa1188600 | -0.802724 | 4.897023e-49 | -8.615850e-47 |
| Msa0538800 | Msa1205850 | 0.804721 | 1.885275e-49 | -8.615850e-47 |
| Msa0538800 | Msa1226610 | 0.802420 | 5.657192e-49 | -8.615850e-47 |
| Msa0538800 | Msa1240510 | 0.800571 | 1.354031e-48 | -8.615850e-47 |
| Msa0538800 | Msa1320820 | 0.802731 | 4.880922e-49 | -8.615850e-47 |
| Msa0538800 | Msa1341490 | 0.819539 | 1.101526e-52 | -8.615850e-47 |
| Msa0538800 | Msa1344310 | 0.805731 | 1.158896e-49 | -8.615850e-47 |
| Msa0538800 | Msa1349520 | 0.819876 | 9.226072e-53 | -8.615850e-47 |
| Msa0538800 | Msa1357080 | 0.817757 | 2.794077e-52 | -8.615850e-47 |
| Msa0538800 | Msa1357890 | 0.809794 | 1.586923e-50 | -8.615850e-47 |
| Msa0538800 | Msa1359920 | 0.806672 | 7.342437e-50 | -8.615850e-47 |
| Msa0538800 | Msa1383740 | 0.827509 | 1.504437e-54 | -8.615850e-47 |
| Msa0538800 | Msa1393430 | 0.812834 | 3.472184e-51 | -8.615850e-47 |
| Msa0538800 | Msa1398090 | 0.800859 | 1.182853e-48 | -8.615850e-47 |
| Msa0538800 | Msa1426570 | 0.818395 | 2.004907e-52 | -8.615850e-47 |
| Msa0538800 | Msa1432480 | 0.806351 | 8.580051e-50 | -8.615850e-47 |
| Msa0538800 | Msa1451150 | 0.801542 | 8.573599e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538800 | MtrunA17_Chr4g0013761 | 95.756 | 542 | 22 | 1 | 17 | 558 | 47 | 587 | 0.0 | 1054 |
| Msa0538800 | MtrunA17_Chr1g0183121 | 83.971 | 549 | 86 | 2 | 17 | 564 | 36 | 583 | 0.0 | 915 |
| Msa0538800 | MtrunA17_Chr3g0078011 | 62.081 | 567 | 191 | 9 | 19 | 577 | 38 | 588 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538800 | AT1G71360.1 | 47.737 | 486 | 235 | 5 | 99 | 579 | 125 | 596 | 1.75e-146 | 436 |
| Msa0538800 | AT1G71360.2 | 47.737 | 486 | 235 | 5 | 99 | 579 | 151 | 622 | 4.12e-146 | 436 |
| Msa0538800 | AT1G22882.1 | 43.322 | 614 | 261 | 13 | 20 | 579 | 80 | 660 | 8.94e-146 | 436 |
| Msa0538800 | AT4G23950.1 | 41.805 | 421 | 205 | 7 | 169 | 579 | 170 | 560 | 3.95e-97 | 307 |
| Msa0538800 | AT4G23950.2 | 41.706 | 422 | 205 | 8 | 169 | 579 | 170 | 561 | 2.00e-95 | 303 |
Find 115 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTATCTCACCCATTT+TGG | 0.194693 | 4_1:-18500450 | None:intergenic |
| AGACGTAAATTTATTTGTTT+TGG | 0.203943 | 4_1:+18500842 | Msa0538800:CDS |
| CTATTTGAGTCTATCTAAAA+AGG | 0.218359 | 4_1:-18499558 | None:intergenic |
| TGCTGTGTTATGGCTATCTT+TGG | 0.237402 | 4_1:+18502554 | Msa0538800:CDS |
| TTGTTCTTAAAGAGCCAAAA+TGG | 0.262822 | 4_1:+18500436 | Msa0538800:CDS |
| ATCCCTGCTTAATATATTAG+AGG | 0.264131 | 4_1:-18500193 | None:intergenic |
| GGCTTTGAAGATTCAACTTC+AGG | 0.266206 | 4_1:-18500467 | None:intergenic |
| TTTCGGTTGGATTATCAAAA+TGG | 0.280038 | 4_1:+18499695 | Msa0538800:CDS |
| GATTTCAAAGTCTTTCAAAT+TGG | 0.322234 | 4_1:-18500331 | None:intergenic |
| TGAACTTTCCAACAGATGTT+TGG | 0.325943 | 4_1:+18500364 | Msa0538800:CDS |
| TTATTATCTTTGTATGTAGA+TGG | 0.326236 | 4_1:+18499661 | Msa0538800:CDS |
| AAGTACGAACTTTCTGCATT+AGG | 0.328303 | 4_1:-18500818 | None:intergenic |
| ACATGAAACGGCAAACATTA+AGG | 0.334447 | 4_1:+18500728 | Msa0538800:CDS |
| ATGCCAGTGATCTCAATTCT+TGG | 0.334479 | 4_1:+18501115 | Msa0538800:CDS |
| GAACTTTCCAACAGATGTTT+GGG | 0.347879 | 4_1:+18500365 | Msa0538800:CDS |
| GTGCGGGTAGCAGCTCTTCC+TGG | 0.352659 | 4_1:+18502640 | Msa0538800:CDS |
| TTTCATTGATTGCTGTGTTA+TGG | 0.354747 | 4_1:+18502544 | Msa0538800:CDS |
| GTTATGGCTATCTTTGGATT+TGG | 0.359446 | 4_1:+18502560 | Msa0538800:CDS |
| AATGTTTGCCGTTTCATGTT+TGG | 0.366928 | 4_1:-18500724 | None:intergenic |
| CAACAAGTTGGCAGGATGCC+TGG | 0.376214 | 4_1:+18500777 | Msa0538800:CDS |
| CGGATTTCTTCAACTGGATC+AGG | 0.377073 | 4_1:-18500753 | None:intergenic |
| TTTATTAGAAGCTAAAACTT+TGG | 0.377508 | 4_1:-18500157 | None:intergenic |
| TCGAAGTGTAATACATAGAT+TGG | 0.392545 | 4_1:+18500089 | Msa0538800:CDS |
| CAGATGTTTGGGATTTCCTT+GGG | 0.397990 | 4_1:+18500376 | Msa0538800:CDS |
| CATATCTCATAGTCTTATAT+TGG | 0.398009 | 4_1:+18499633 | Msa0538800:CDS |
| AAAGAATCTCATTGATCATC+AGG | 0.399245 | 4_1:+18500971 | Msa0538800:CDS |
| TGTTGACGGATTTCTTCAAC+TGG | 0.401246 | 4_1:-18500759 | None:intergenic |
| GCTACCCGCACAAAATTTCC+TGG | 0.417360 | 4_1:-18502628 | None:intergenic |
| ACAGATGTTTGGGATTTCCT+TGG | 0.426261 | 4_1:+18500375 | Msa0538800:CDS |
| TTATCTCGGGCTGTGCCTCT+TGG | 0.428365 | 4_1:+18500006 | Msa0538800:CDS |
| AGATGGATCTGAAGAGCTTT+CGG | 0.433864 | 4_1:+18499678 | Msa0538800:CDS |
| CCAAAGTGACCTGCTTCTCT+CGG | 0.437233 | 4_1:-18502482 | None:intergenic |
| TTGAAAGACTTTGAAATCCA+TGG | 0.438972 | 4_1:+18500336 | Msa0538800:CDS |
| CAAGACAATCTACTTGCATC+TGG | 0.441632 | 4_1:+18500582 | Msa0538800:CDS |
| TTGAATCTTCAAAGCCACTA+TGG | 0.444477 | 4_1:+18500474 | Msa0538800:CDS |
| GGTGGAGATGCCGAGGCTAA+TGG | 0.450979 | 4_1:+18499823 | Msa0538800:CDS |
| CAATTATGCTTCGGCATCAA+AGG | 0.453952 | 4_1:+18500131 | Msa0538800:CDS |
| GTGCCTCTAATATATTAAGC+AGG | 0.461361 | 4_1:+18500190 | Msa0538800:CDS |
| AACAAGTTGGCAGGATGCCT+GGG | 0.465917 | 4_1:+18500778 | Msa0538800:CDS |
| CTCATCTTCCAAACATGAAA+CGG | 0.467529 | 4_1:+18500716 | Msa0538800:CDS |
| TGAAAAGGTCCGAGAGAAGC+AGG | 0.467740 | 4_1:+18502473 | Msa0538800:CDS |
| TTGAGCATGCCTCACATTCG+AGG | 0.476058 | 4_1:-18500409 | None:intergenic |
| AAAAGTCTGATATCTTATCT+CGG | 0.477926 | 4_1:+18499992 | Msa0538800:CDS |
| ATCAGTTCTAAAGTTAAGTC+AGG | 0.481166 | 4_1:+18500054 | Msa0538800:CDS |
| TAGAGAACACTGATAACTTT+AGG | 0.484732 | 4_1:+18499514 | Msa0538800:five_prime_UTR |
| TGTTCAATCACAGCAGGATC+AGG | 0.490358 | 4_1:-18500642 | None:intergenic |
| CGATGCTTGCTTTCCGTCGG+AGG | 0.491001 | 4_1:+18499783 | Msa0538800:CDS |
| CCGAGAGAAGCAGGTCACTT+TGG | 0.496396 | 4_1:+18502482 | Msa0538800:CDS |
| ATCCAGGTCCGAGGTTGAAA+AGG | 0.496660 | 4_1:+18502458 | Msa0538800:intron |
| GGATCTGAAGAGCTTTCGGT+TGG | 0.496922 | 4_1:+18499682 | Msa0538800:CDS |
| TCGAAATCCGTGTTCTGTGG+TGG | 0.498513 | 4_1:+18500230 | Msa0538800:CDS |
| GCTTCTAATAAAGAAGGAAA+AGG | 0.498751 | 4_1:+18500168 | Msa0538800:CDS |
| TTAGTTAGTGAGTCACAAAC+TGG | 0.499388 | 4_1:+18499847 | Msa0538800:CDS |
| TGTTCTTAAAGAGCCAAAAT+GGG | 0.500054 | 4_1:+18500437 | Msa0538800:CDS |
| GCATCCTGCCAACTTGTTGA+CGG | 0.500920 | 4_1:-18500773 | None:intergenic |
| AAAGTCTGATATCTTATCTC+GGG | 0.500962 | 4_1:+18499993 | Msa0538800:CDS |
| GTCTTGATGAATTCAAGAGC+AGG | 0.506199 | 4_1:+18500028 | Msa0538800:CDS |
| AGGAAATCCCAAACATCTGT+TGG | 0.507573 | 4_1:-18500372 | None:intergenic |
| GAAGATGAGATATCTGAAGC+AGG | 0.514073 | 4_1:-18500702 | None:intergenic |
| GAGGCTTTAATATATTCTAA+AGG | 0.521045 | 4_1:+18499802 | Msa0538800:CDS |
| TGCAGAATACAATTATGCTT+CGG | 0.521102 | 4_1:+18500122 | Msa0538800:CDS |
| TTGGAAAGTTCAGACTTCCA+TGG | 0.523368 | 4_1:-18500353 | None:intergenic |
| CGAAATCCGTGTTCTGTGGT+GGG | 0.532246 | 4_1:+18500231 | Msa0538800:CDS |
| CAGAGATTTCACAAAATCCA+TGG | 0.536981 | 4_1:-18499729 | None:intergenic |
| TGAACATGTTCAATCACAGC+AGG | 0.538033 | 4_1:-18500648 | None:intergenic |
| TCACAAACTGGTAGGGAAAG+TGG | 0.547155 | 4_1:+18499859 | Msa0538800:CDS |
| AAATCCGTCAACAAGTTGGC+AGG | 0.547210 | 4_1:+18500769 | Msa0538800:CDS |
| AATTATGCTTCGGCATCAAA+GGG | 0.548259 | 4_1:+18500132 | Msa0538800:CDS |
| GCAGGTCACTTTGGAAAACA+AGG | 0.551081 | 4_1:+18502491 | Msa0538800:CDS |
| TTGATAGAACAAATAACTCC+AGG | 0.552685 | 4_1:+18502610 | Msa0538800:CDS |
| AGTCTTTCAAATTGGAAGAG+TGG | 0.555467 | 4_1:-18500323 | None:intergenic |
| GGTGGGTAAATTTGTCATCA+TGG | 0.555748 | 4_1:+18500248 | Msa0538800:CDS |
| TAATTGTATTCTGCACCGCC+AGG | 0.555812 | 4_1:-18500114 | None:intergenic |
| AATCTACTTGCATCTGGAGA+AGG | 0.555840 | 4_1:+18500588 | Msa0538800:CDS |
| CTTCCAAGAATTGAGATCAC+TGG | 0.557290 | 4_1:-18501118 | None:intergenic |
| CAATCACAGCAGGATCAGGA+TGG | 0.558041 | 4_1:-18500638 | None:intergenic |
| GGAACTTTCAGAAGAAACCT+TGG | 0.560587 | 4_1:+18500269 | Msa0538800:CDS |
| TAGTGAGTCACAAACTGGTA+GGG | 0.560835 | 4_1:+18499852 | Msa0538800:CDS |
| AGTGGTGCTTATGCGGTACC+TGG | 0.565403 | 4_1:+18499877 | Msa0538800:CDS |
| TCTAAAGTTAAGTCAGGCAC+TGG | 0.565512 | 4_1:+18500060 | Msa0538800:CDS |
| CGAATGTGAGGCATGCTCAA+AGG | 0.565768 | 4_1:+18500412 | Msa0538800:CDS |
| AATCACAGCAGGATCAGGAT+GGG | 0.580916 | 4_1:-18500637 | None:intergenic |
| AATAAAATTCAGAACCATAG+TGG | 0.582520 | 4_1:-18500488 | None:intergenic |
| TTAGTGAGTCACAAACTGGT+AGG | 0.583204 | 4_1:+18499851 | Msa0538800:CDS |
| TGAGATATCTGAAGCAGGGA+CGG | 0.584287 | 4_1:-18500697 | None:intergenic |
| ATCCTCCAGCATCCTCTCAA+CGG | 0.584718 | 4_1:-18500547 | None:intergenic |
| ATCTTGAGAACAGTATCCCC+AGG | 0.590052 | 4_1:-18500795 | None:intergenic |
| GAATATATTAAAGCCTCCGA+CGG | 0.590248 | 4_1:-18499796 | None:intergenic |
| AATTTACCCACCACAGAACA+CGG | 0.592732 | 4_1:-18500237 | None:intergenic |
| GAAGAAATCCGTCAACAAGT+TGG | 0.592762 | 4_1:+18500765 | Msa0538800:CDS |
| GCTTTAATATATTCTAAAGG+TGG | 0.593320 | 4_1:+18499805 | Msa0538800:CDS |
| TGCCTCTAATATATTAAGCA+GGG | 0.599484 | 4_1:+18500191 | Msa0538800:CDS |
| GGATGCCGTTGAGAGGATGC+TGG | 0.600025 | 4_1:+18500542 | Msa0538800:CDS |
| GTAATACATAGATTGGAGCC+TGG | 0.603227 | 4_1:+18500096 | Msa0538800:CDS |
| TTCTTAATAATCCAGGTCCG+AGG | 0.603681 | 4_1:+18502449 | Msa0538800:intron |
| TTCTAAAGGTGGAGATGCCG+AGG | 0.608474 | 4_1:+18499816 | Msa0538800:CDS |
| AATCGATGCTTGCTTTCCGT+CGG | 0.608628 | 4_1:+18499780 | Msa0538800:CDS |
| ATCACAGCAGGATCAGGATG+GGG | 0.610550 | 4_1:-18500636 | None:intergenic |
| TACTGATTCTGCTAATAGAG+AGG | 0.611265 | 4_1:+18499918 | Msa0538800:CDS |
| TTGGTGTGGATGCCGTTGAG+AGG | 0.612570 | 4_1:+18500535 | Msa0538800:CDS |
| ACTAACTAAACCATTAGCCT+CGG | 0.613554 | 4_1:-18499833 | None:intergenic |
| TATTTCTATAGTATCTACCA+AGG | 0.616012 | 4_1:-18500286 | None:intergenic |
| AAAGAGTATAGCAAAGACAC+AGG | 0.618523 | 4_1:+18500909 | Msa0538800:CDS |
| TCTTCGAAATCCGTGTTCTG+TGG | 0.620035 | 4_1:+18500227 | Msa0538800:CDS |
| TCTTGATGAATTCAAGAGCA+GGG | 0.621293 | 4_1:+18500029 | Msa0538800:CDS |
| AAATGGAATGAAGTGAACCA+TGG | 0.624684 | 4_1:+18499712 | Msa0538800:CDS |
| AAGATGAGATATCTGAAGCA+GGG | 0.630230 | 4_1:-18500701 | None:intergenic |
| TAGGGAAAGTGGTGCTTATG+CGG | 0.633054 | 4_1:+18499870 | Msa0538800:CDS |
| TCGAGGCAGTAAAATTCCCA+AGG | 0.650182 | 4_1:-18500392 | None:intergenic |
| TTGAATTCATCAAGACCAAG+AGG | 0.657165 | 4_1:-18500021 | None:intergenic |
| ACTCAGTAAAAGAAGAAACC+AGG | 0.664514 | 4_1:-18502658 | None:intergenic |
| ACAAGTTGGCAGGATGCCTG+GGG | 0.671945 | 4_1:+18500779 | Msa0538800:CDS |
| CAGGTCACTTTGGAAAACAA+GGG | 0.692624 | 4_1:+18502492 | Msa0538800:CDS |
| TGCCGTTGAGAGGATGCTGG+AGG | 0.725275 | 4_1:+18500545 | Msa0538800:CDS |
| ATACATAGATTGGAGCCTGG+CGG | 0.731549 | 4_1:+18500099 | Msa0538800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATAGAAAGTAGTA+TGG | - | chr4_1:18501064-18501083 | None:intergenic | 15.0% |
| !!! | ATACTACTTTCTATTAATTT+TGG | + | chr4_1:18501063-18501082 | Msa0538800:intron | 15.0% |
| !!! | TTAATTTTGGAAATGATTTT+TGG | + | chr4_1:18501076-18501095 | Msa0538800:intron | 15.0% |
| !!! | TAAACCAAATTTTCAATTTA+AGG | + | chr4_1:18501753-18501772 | Msa0538800:intron | 15.0% |
| !! | TACAGAAACTAAAATTTAAA+AGG | + | chr4_1:18501825-18501844 | Msa0538800:intron | 15.0% |
| !! | TATTTGAGTCTATCTAAAAA+GGG | - | chr4_1:18499560-18499579 | None:intergenic | 20.0% |
| !! | TTATTATCTTTGTATGTAGA+TGG | + | chr4_1:18499661-18499680 | Msa0538800:CDS | 20.0% |
| !!! | TTTTCTTTATTTATATCACC+AGG | - | chr4_1:18499898-18499917 | None:intergenic | 20.0% |
| !! | TTTATTAGAAGCTAAAACTT+TGG | - | chr4_1:18500160-18500179 | None:intergenic | 20.0% |
| !!! | AGACGTAAATTTATTTGTTT+TGG | + | chr4_1:18500842-18500861 | Msa0538800:CDS | 20.0% |
| !!! | TAAATTTATTTGTTTTGGAG+CGG | + | chr4_1:18500847-18500866 | Msa0538800:CDS | 20.0% |
| !! | AACTACTTAATTACTTACAA+CGG | + | chr4_1:18501360-18501379 | Msa0538800:intron | 20.0% |
| !! | AAACTTTATAAGAACTACTT+AGG | - | chr4_1:18501653-18501672 | None:intergenic | 20.0% |
| !! | TAAGTAGTTCTTATAAAGTT+TGG | + | chr4_1:18501652-18501671 | Msa0538800:intron | 20.0% |
| !! | AAGTAGTTCTTATAAAGTTT+GGG | + | chr4_1:18501653-18501672 | Msa0538800:intron | 20.0% |
| !!! | ATTTTAGTTTCTGTATCTTA+TGG | - | chr4_1:18501820-18501839 | None:intergenic | 20.0% |
| !! | AGGAATATAAAGATTATCTT+TGG | + | chr4_1:18502408-18502427 | Msa0538800:intron | 20.0% |
| !!! | TTTTCTTTTCTTAATAATCC+AGG | + | chr4_1:18502442-18502461 | Msa0538800:intron | 20.0% |
| ! | CTATTTGAGTCTATCTAAAA+AGG | - | chr4_1:18499561-18499580 | None:intergenic | 25.0% |
| !! | CTTTTTAGATAGACTCAAAT+AGG | + | chr4_1:18499559-18499578 | Msa0538800:five_prime_UTR | 25.0% |
| !!! | CATATCTCATAGTCTTATAT+TGG | + | chr4_1:18499633-18499652 | Msa0538800:CDS | 25.0% |
| !! | GAGGCTTTAATATATTCTAA+AGG | + | chr4_1:18499802-18499821 | Msa0538800:CDS | 25.0% |
| !! | GCTTTAATATATTCTAAAGG+TGG | + | chr4_1:18499805-18499824 | Msa0538800:CDS | 25.0% |
| ! | AAAAGTCTGATATCTTATCT+CGG | + | chr4_1:18499992-18500011 | Msa0538800:CDS | 25.0% |
| !!! | GTTTTAGCTTCTAATAAAGA+AGG | + | chr4_1:18500162-18500181 | Msa0538800:CDS | 25.0% |
| !! | TATTTCTATAGTATCTACCA+AGG | - | chr4_1:18500289-18500308 | None:intergenic | 25.0% |
| ! | GATTTCAAAGTCTTTCAAAT+TGG | - | chr4_1:18500334-18500353 | None:intergenic | 25.0% |
| ! | AATAAAATTCAGAACCATAG+TGG | - | chr4_1:18500491-18500510 | None:intergenic | 25.0% |
| ! | TGTTCATAAAAAAACTCTTG+AGG | + | chr4_1:18500665-18500684 | Msa0538800:CDS | 25.0% |
| ! | GTTCATAAAAAAACTCTTGA+GGG | + | chr4_1:18500666-18500685 | Msa0538800:CDS | 25.0% |
| ! | TTCATAAAAAAACTCTTGAG+GGG | + | chr4_1:18500667-18500686 | Msa0538800:CDS | 25.0% |
| !! | ACTTTTATCGAAAACATAGA+AGG | + | chr4_1:18501426-18501445 | Msa0538800:intron | 25.0% |
| ! | ACTATACCTTAAAGTAATCA+AGG | + | chr4_1:18501483-18501502 | Msa0538800:intron | 25.0% |
| ! | CCATCCTTAAATTGAAAATT+TGG | - | chr4_1:18501760-18501779 | None:intergenic | 25.0% |
| !! | CCAAATTTTCAATTTAAGGA+TGG | + | chr4_1:18501757-18501776 | Msa0538800:intron | 25.0% |
| ! | TTTATTTACAAACTGATGCA+TGG | + | chr4_1:18501792-18501811 | Msa0538800:intron | 25.0% |
| !!! | AATTTTTTTCTCGGTCATAA+AGG | - | chr4_1:18501936-18501955 | None:intergenic | 25.0% |
| !!! | TTCTCTCAGAATTTTTTTCT+CGG | - | chr4_1:18501945-18501964 | None:intergenic | 25.0% |
| !! | AAAATTCTGAGAGAAAAAGA+AGG | + | chr4_1:18501950-18501969 | Msa0538800:intron | 25.0% |
| ! | AAAATTAGAGAAAACCCAAT+TGG | + | chr4_1:18501975-18501994 | Msa0538800:intron | 25.0% |
| ! | TTGTAATTAGACGTATGTTA+GGG | - | chr4_1:18502050-18502069 | None:intergenic | 25.0% |
| ! | ATTGTAATTAGACGTATGTT+AGG | - | chr4_1:18502051-18502070 | None:intergenic | 25.0% |
| !! | ATCTTGAAAAACTTGTTCAT+GGG | + | chr4_1:18502240-18502259 | Msa0538800:intron | 25.0% |
| ! | GGAATAAAAATGTATTCTGT+CGG | + | chr4_1:18502261-18502280 | Msa0538800:intron | 25.0% |
| ! | TTTATATTCCTTAACAAGCT+CGG | - | chr4_1:18502399-18502418 | None:intergenic | 25.0% |
| TAGAGAACACTGATAACTTT+AGG | + | chr4_1:18499514-18499533 | Msa0538800:five_prime_UTR | 30.0% | |
| TTTCGGTTGGATTATCAAAA+TGG | + | chr4_1:18499695-18499714 | Msa0538800:CDS | 30.0% | |
| AAAGTCTGATATCTTATCTC+GGG | + | chr4_1:18499993-18500012 | Msa0538800:CDS | 30.0% | |
| !! | ATCAGTTCTAAAGTTAAGTC+AGG | + | chr4_1:18500054-18500073 | Msa0538800:CDS | 30.0% |
| TCGAAGTGTAATACATAGAT+TGG | + | chr4_1:18500089-18500108 | Msa0538800:CDS | 30.0% | |
| TGCAGAATACAATTATGCTT+CGG | + | chr4_1:18500122-18500141 | Msa0538800:CDS | 30.0% | |
| GCTTCTAATAAAGAAGGAAA+AGG | + | chr4_1:18500168-18500187 | Msa0538800:CDS | 30.0% | |
| TGCCTCTAATATATTAAGCA+GGG | + | chr4_1:18500191-18500210 | Msa0538800:CDS | 30.0% | |
| ATCCCTGCTTAATATATTAG+AGG | - | chr4_1:18500196-18500215 | None:intergenic | 30.0% | |
| !! | TTGAAAGACTTTGAAATCCA+TGG | + | chr4_1:18500336-18500355 | Msa0538800:CDS | 30.0% |
| TTGTTCTTAAAGAGCCAAAA+TGG | + | chr4_1:18500436-18500455 | Msa0538800:CDS | 30.0% | |
| TGTTCTTAAAGAGCCAAAAT+GGG | + | chr4_1:18500437-18500456 | Msa0538800:CDS | 30.0% | |
| AAAGAATCTCATTGATCATC+AGG | + | chr4_1:18500971-18500990 | Msa0538800:CDS | 30.0% | |
| !!! | TTCAAGATAATGCTGTTTTG+AGG | + | chr4_1:18501172-18501191 | Msa0538800:CDS | 30.0% |
| ACACATCCTTGATTACTTTA+AGG | - | chr4_1:18501492-18501511 | None:intergenic | 30.0% | |
| TCTCATACCTAAAACAATGA+AGG | - | chr4_1:18501595-18501614 | None:intergenic | 30.0% | |
| !!! | TTCATTGTTTTAGGTATGAG+AGG | + | chr4_1:18501594-18501613 | Msa0538800:intron | 30.0% |
| TTGAGATATGACCTAATACT+CGG | + | chr4_1:18501697-18501716 | Msa0538800:intron | 30.0% | |
| ! | AAAATTTGGTTTAGCAACAG+AGG | - | chr4_1:18501746-18501765 | None:intergenic | 30.0% |
| GTCATAAAGGATCTATCAAT+TGG | - | chr4_1:18501923-18501942 | None:intergenic | 30.0% | |
| CATTTAGAAAATTCCTCCAT+TGG | - | chr4_1:18502011-18502030 | None:intergenic | 30.0% | |
| TCAGTTAGTTGGATTATTAG+AGG | - | chr4_1:18502114-18502133 | None:intergenic | 30.0% | |
| !! | AGTGTGTTCTAGAAGAAAAA+GGG | - | chr4_1:18502156-18502175 | None:intergenic | 30.0% |
| !! | AAGTGTGTTCTAGAAGAAAA+AGG | - | chr4_1:18502157-18502176 | None:intergenic | 30.0% |
| CTAGAACACACTTCTAATTT+CGG | + | chr4_1:18502164-18502183 | Msa0538800:intron | 30.0% | |
| TAGAACACACTTCTAATTTC+GGG | + | chr4_1:18502165-18502184 | Msa0538800:intron | 30.0% | |
| ! | GATCTTGAAAAACTTGTTCA+TGG | + | chr4_1:18502239-18502258 | Msa0538800:intron | 30.0% |
| TTATATTCCTTAACAAGCTC+GGG | - | chr4_1:18502398-18502417 | None:intergenic | 30.0% | |
| ! | TTTCATTGATTGCTGTGTTA+TGG | + | chr4_1:18502544-18502563 | Msa0538800:CDS | 30.0% |
| TTGATAGAACAAATAACTCC+AGG | + | chr4_1:18502610-18502629 | Msa0538800:CDS | 30.0% | |
| AAATGGAATGAAGTGAACCA+TGG | + | chr4_1:18499712-18499731 | Msa0538800:CDS | 35.0% | |
| CAGAGATTTCACAAAATCCA+TGG | - | chr4_1:18499732-18499751 | None:intergenic | 35.0% | |
| GAATATATTAAAGCCTCCGA+CGG | - | chr4_1:18499799-18499818 | None:intergenic | 35.0% | |
| ! | ACTAACTAAACCATTAGCCT+CGG | - | chr4_1:18499836-18499855 | None:intergenic | 35.0% |
| TTAGTTAGTGAGTCACAAAC+TGG | + | chr4_1:18499847-18499866 | Msa0538800:CDS | 35.0% | |
| !! | TACTGATTCTGCTAATAGAG+AGG | + | chr4_1:18499918-18499937 | Msa0538800:CDS | 35.0% |
| TTGAATTCATCAAGACCAAG+AGG | - | chr4_1:18500024-18500043 | None:intergenic | 35.0% | |
| TCTTGATGAATTCAAGAGCA+GGG | + | chr4_1:18500029-18500048 | Msa0538800:CDS | 35.0% | |
| AATTATGCTTCGGCATCAAA+GGG | + | chr4_1:18500132-18500151 | Msa0538800:CDS | 35.0% | |
| GTGCCTCTAATATATTAAGC+AGG | + | chr4_1:18500190-18500209 | Msa0538800:CDS | 35.0% | |
| AGTCTTTCAAATTGGAAGAG+TGG | - | chr4_1:18500326-18500345 | None:intergenic | 35.0% | |
| TGAACTTTCCAACAGATGTT+TGG | + | chr4_1:18500364-18500383 | Msa0538800:CDS | 35.0% | |
| GAACTTTCCAACAGATGTTT+GGG | + | chr4_1:18500365-18500384 | Msa0538800:CDS | 35.0% | |
| TTGAATCTTCAAAGCCACTA+TGG | + | chr4_1:18500474-18500493 | Msa0538800:CDS | 35.0% | |
| !! | CTAAGCGTTGTTGAAGTTTT+TGG | + | chr4_1:18500516-18500535 | Msa0538800:CDS | 35.0% |
| ! | AAGATGAGATATCTGAAGCA+GGG | - | chr4_1:18500704-18500723 | None:intergenic | 35.0% |
| CTCATCTTCCAAACATGAAA+CGG | + | chr4_1:18500716-18500735 | Msa0538800:CDS | 35.0% | |
| ! | AATGTTTGCCGTTTCATGTT+TGG | - | chr4_1:18500727-18500746 | None:intergenic | 35.0% |
| ACATGAAACGGCAAACATTA+AGG | + | chr4_1:18500728-18500747 | Msa0538800:CDS | 35.0% | |
| AAGTACGAACTTTCTGCATT+AGG | - | chr4_1:18500821-18500840 | None:intergenic | 35.0% | |
| !!! | ATTTGTTTTGGAGCGGTATA+TGG | + | chr4_1:18500854-18500873 | Msa0538800:CDS | 35.0% |
| ! | AAAGAGTATAGCAAAGACAC+AGG | + | chr4_1:18500909-18500928 | Msa0538800:CDS | 35.0% |
| !!! | AAATGATTTTTGGCTCATGC+AGG | + | chr4_1:18501086-18501105 | Msa0538800:intron | 35.0% |
| ATCAAGGATGTGTTTGAACT+TGG | + | chr4_1:18501499-18501518 | Msa0538800:intron | 35.0% | |
| ! | TAAAACAATGAAGGTGATGG+AGG | - | chr4_1:18501586-18501605 | None:intergenic | 35.0% |
| ! | TCCATCACCTTCATTGTTTT+AGG | + | chr4_1:18501585-18501604 | Msa0538800:intron | 35.0% |
| ACCTAAAACAATGAAGGTGA+TGG | - | chr4_1:18501589-18501608 | None:intergenic | 35.0% | |
| !!! | TTGTTTTAGGTATGAGAGGA+TGG | + | chr4_1:18501598-18501617 | Msa0538800:intron | 35.0% |
| ACTACTTAGGTCATATCTCA+AGG | - | chr4_1:18501640-18501659 | None:intergenic | 35.0% | |
| TCATATCTCAAGGCAATGTA+AGG | - | chr4_1:18501688-18501707 | None:intergenic | 35.0% | |
| GAGTATTAGGTCATATCTCA+AGG | - | chr4_1:18501698-18501717 | None:intergenic | 35.0% | |
| TTAGAAAATTCCTCCATTGG+CGG | - | chr4_1:18502008-18502027 | None:intergenic | 35.0% | |
| AGTTAGCTAGTTAGCTAAAG+TGG | - | chr4_1:18502082-18502101 | None:intergenic | 35.0% | |
| CTAGAAGAAAAAGGGATCAA+GGG | - | chr4_1:18502148-18502167 | None:intergenic | 35.0% | |
| TCTAGAAGAAAAAGGGATCA+AGG | - | chr4_1:18502149-18502168 | None:intergenic | 35.0% | |
| AGTGTATTATCGTCATGTGT+AGG | - | chr4_1:18502290-18502309 | None:intergenic | 35.0% | |
| CACATGACGATAATACACTT+AGG | + | chr4_1:18502291-18502310 | Msa0538800:intron | 35.0% | |
| AGAACACAGAAACCACTAAA+CGG | - | chr4_1:18502354-18502373 | None:intergenic | 35.0% | |
| GTTATGGCTATCTTTGGATT+TGG | + | chr4_1:18502560-18502579 | Msa0538800:CDS | 35.0% | |
| ! | TAACTCCAGGAAATTTTGTG+CGG | + | chr4_1:18502623-18502642 | Msa0538800:CDS | 35.0% |
| ACTCAGTAAAAGAAGAAACC+AGG | - | chr4_1:18502661-18502680 | None:intergenic | 35.0% | |
| AGATGGATCTGAAGAGCTTT+CGG | + | chr4_1:18499678-18499697 | Msa0538800:CDS | 40.0% | |
| TTAGTGAGTCACAAACTGGT+AGG | + | chr4_1:18499851-18499870 | Msa0538800:CDS | 40.0% | |
| TAGTGAGTCACAAACTGGTA+GGG | + | chr4_1:18499852-18499871 | Msa0538800:CDS | 40.0% | |
| GTCTTGATGAATTCAAGAGC+AGG | + | chr4_1:18500028-18500047 | Msa0538800:CDS | 40.0% | |
| ! | TCTAAAGTTAAGTCAGGCAC+TGG | + | chr4_1:18500060-18500079 | Msa0538800:CDS | 40.0% |
| GTAATACATAGATTGGAGCC+TGG | + | chr4_1:18500096-18500115 | Msa0538800:CDS | 40.0% | |
| CAATTATGCTTCGGCATCAA+AGG | + | chr4_1:18500131-18500150 | Msa0538800:CDS | 40.0% | |
| AATTTACCCACCACAGAACA+CGG | - | chr4_1:18500240-18500259 | None:intergenic | 40.0% | |
| GGTGGGTAAATTTGTCATCA+TGG | + | chr4_1:18500248-18500267 | Msa0538800:CDS | 40.0% | |
| GGAACTTTCAGAAGAAACCT+TGG | + | chr4_1:18500269-18500288 | Msa0538800:CDS | 40.0% | |
| TTGGAAAGTTCAGACTTCCA+TGG | - | chr4_1:18500356-18500375 | None:intergenic | 40.0% | |
| AGGAAATCCCAAACATCTGT+TGG | - | chr4_1:18500375-18500394 | None:intergenic | 40.0% | |
| ! | ACAGATGTTTGGGATTTCCT+TGG | + | chr4_1:18500375-18500394 | Msa0538800:CDS | 40.0% |
| ! | CAGATGTTTGGGATTTCCTT+GGG | + | chr4_1:18500376-18500395 | Msa0538800:CDS | 40.0% |
| ! | ATTTTACTGCCTCGAATGTG+AGG | + | chr4_1:18500400-18500419 | Msa0538800:CDS | 40.0% |
| ! | TTCAGGTATCTCACCCATTT+TGG | - | chr4_1:18500453-18500472 | None:intergenic | 40.0% |
| !! | GGCTTTGAAGATTCAACTTC+AGG | - | chr4_1:18500470-18500489 | None:intergenic | 40.0% |
| !!! | CGTTGTTGAAGTTTTTGGTG+TGG | + | chr4_1:18500521-18500540 | Msa0538800:CDS | 40.0% |
| CAAGACAATCTACTTGCATC+TGG | + | chr4_1:18500582-18500601 | Msa0538800:CDS | 40.0% | |
| AATCTACTTGCATCTGGAGA+AGG | + | chr4_1:18500588-18500607 | Msa0538800:CDS | 40.0% | |
| TGAACATGTTCAATCACAGC+AGG | - | chr4_1:18500651-18500670 | None:intergenic | 40.0% | |
| ! | GAAGATGAGATATCTGAAGC+AGG | - | chr4_1:18500705-18500724 | None:intergenic | 40.0% |
| !! | TGTTGACGGATTTCTTCAAC+TGG | - | chr4_1:18500762-18500781 | None:intergenic | 40.0% |
| GAAGAAATCCGTCAACAAGT+TGG | + | chr4_1:18500765-18500784 | Msa0538800:CDS | 40.0% | |
| ATGCCAGTGATCTCAATTCT+TGG | + | chr4_1:18501115-18501134 | Msa0538800:CDS | 40.0% | |
| CTTCCAAGAATTGAGATCAC+TGG | - | chr4_1:18501121-18501140 | None:intergenic | 40.0% | |
| GTCTTTCTCTCAGTGTTCTA+TGG | + | chr4_1:18501309-18501328 | Msa0538800:intron | 40.0% | |
| ! | TTTTGCCAGACTAACAAGTC+CGG | - | chr4_1:18501340-18501359 | None:intergenic | 40.0% |
| !! | TTCACTTGTTGTGCTAGACT+TGG | - | chr4_1:18501407-18501426 | None:intergenic | 40.0% |
| !! | GATGTGTTTGAACTTGGTGT+TGG | + | chr4_1:18501505-18501524 | Msa0538800:intron | 40.0% |
| TGCACTTAGGTGGCAAATTA+AGG | - | chr4_1:18501539-18501558 | None:intergenic | 40.0% | |
| !! | TTAATTTGCCACCTAAGTGC+AGG | + | chr4_1:18501538-18501557 | Msa0538800:intron | 40.0% |
| ATCAGCAAATGCCGAGTATT+AGG | - | chr4_1:18501711-18501730 | None:intergenic | 40.0% | |
| ATCTATCAATTGGTCCAACC+TGG | - | chr4_1:18501913-18501932 | None:intergenic | 40.0% | |
| CAGTTAGGTAGTCAGTTAGT+TGG | - | chr4_1:18502125-18502144 | None:intergenic | 40.0% | |
| CTTCTAATTTCGGGACTTCT+AGG | + | chr4_1:18502174-18502193 | Msa0538800:intron | 40.0% | |
| TTTACGAGTCTCGTCGTATT+AGG | - | chr4_1:18502202-18502221 | None:intergenic | 40.0% | |
| TTCTTAATAATCCAGGTCCG+AGG | + | chr4_1:18502449-18502468 | Msa0538800:intron | 40.0% | |
| ! | CAGGTCACTTTGGAAAACAA+GGG | + | chr4_1:18502492-18502511 | Msa0538800:CDS | 40.0% |
| TGCTGTGTTATGGCTATCTT+TGG | + | chr4_1:18502554-18502573 | Msa0538800:CDS | 40.0% | |
| ! | AACTCCAGGAAATTTTGTGC+GGG | + | chr4_1:18502624-18502643 | Msa0538800:CDS | 40.0% |
| AATCGATGCTTGCTTTCCGT+CGG | + | chr4_1:18499780-18499799 | Msa0538800:CDS | 45.0% | |
| TCACAAACTGGTAGGGAAAG+TGG | + | chr4_1:18499859-18499878 | Msa0538800:CDS | 45.0% | |
| TAGGGAAAGTGGTGCTTATG+CGG | + | chr4_1:18499870-18499889 | Msa0538800:CDS | 45.0% | |
| ATACATAGATTGGAGCCTGG+CGG | + | chr4_1:18500099-18500118 | Msa0538800:CDS | 45.0% | |
| TAATTGTATTCTGCACCGCC+AGG | - | chr4_1:18500117-18500136 | None:intergenic | 45.0% | |
| TCTTCGAAATCCGTGTTCTG+TGG | + | chr4_1:18500227-18500246 | Msa0538800:CDS | 45.0% | |
| TCGAGGCAGTAAAATTCCCA+AGG | - | chr4_1:18500395-18500414 | None:intergenic | 45.0% | |
| AATCACAGCAGGATCAGGAT+GGG | - | chr4_1:18500640-18500659 | None:intergenic | 45.0% | |
| TGTTCAATCACAGCAGGATC+AGG | - | chr4_1:18500645-18500664 | None:intergenic | 45.0% | |
| ! | TGAGATATCTGAAGCAGGGA+CGG | - | chr4_1:18500700-18500719 | None:intergenic | 45.0% |
| CGGATTTCTTCAACTGGATC+AGG | - | chr4_1:18500756-18500775 | None:intergenic | 45.0% | |
| ! | AAATCCGTCAACAAGTTGGC+AGG | + | chr4_1:18500769-18500788 | Msa0538800:CDS | 45.0% |
| ATCTTGAGAACAGTATCCCC+AGG | - | chr4_1:18500798-18500817 | None:intergenic | 45.0% | |
| CTGAGAGAAAGACCAAGACA+GGG | - | chr4_1:18501302-18501321 | None:intergenic | 45.0% | |
| ACTGAGAGAAAGACCAAGAC+AGG | - | chr4_1:18501303-18501322 | None:intergenic | 45.0% | |
| TCAGTGTTCTATGGCCAAAC+CGG | + | chr4_1:18501318-18501337 | Msa0538800:intron | 45.0% | |
| GAAACCCAAATCCTGCACTT+AGG | - | chr4_1:18501552-18501571 | None:intergenic | 45.0% | |
| TCTCAAGGCAATGTAAGGTG+AGG | - | chr4_1:18501683-18501702 | None:intergenic | 45.0% | |
| ! | AATTTGAGTACTGCTCACCC+TGG | + | chr4_1:18501866-18501885 | Msa0538800:intron | 45.0% |
| TTGGCGGAGCAAAACCAATT+GGG | - | chr4_1:18501992-18502011 | None:intergenic | 45.0% | |
| ATTGGCGGAGCAAAACCAAT+TGG | - | chr4_1:18501993-18502012 | None:intergenic | 45.0% | |
| !!! | AATTGGTTTTGCTCCGCCAA+TGG | + | chr4_1:18501992-18502011 | Msa0538800:intron | 45.0% |
| AAAAGGGATCAAGGGCAGTT+AGG | - | chr4_1:18502140-18502159 | None:intergenic | 45.0% | |
| CACAGAAACCACTAAACGGA+GGG | - | chr4_1:18502350-18502369 | None:intergenic | 45.0% | |
| ACACAGAAACCACTAAACGG+AGG | - | chr4_1:18502351-18502370 | None:intergenic | 45.0% | |
| !! | TTTGTCACCCGAGCTTGTTA+AGG | + | chr4_1:18502388-18502407 | Msa0538800:intron | 45.0% |
| ! | GCAGGTCACTTTGGAAAACA+AGG | + | chr4_1:18502491-18502510 | Msa0538800:CDS | 45.0% |
| GGATCTGAAGAGCTTTCGGT+TGG | + | chr4_1:18499682-18499701 | Msa0538800:CDS | 50.0% | |
| ! | TTCTAAAGGTGGAGATGCCG+AGG | + | chr4_1:18499816-18499835 | Msa0538800:CDS | 50.0% |
| TCGAAATCCGTGTTCTGTGG+TGG | + | chr4_1:18500230-18500249 | Msa0538800:CDS | 50.0% | |
| CGAAATCCGTGTTCTGTGGT+GGG | + | chr4_1:18500231-18500250 | Msa0538800:CDS | 50.0% | |
| TTGAGCATGCCTCACATTCG+AGG | - | chr4_1:18500412-18500431 | None:intergenic | 50.0% | |
| CGAATGTGAGGCATGCTCAA+AGG | + | chr4_1:18500412-18500431 | Msa0538800:CDS | 50.0% | |
| ATCCTCCAGCATCCTCTCAA+CGG | - | chr4_1:18500550-18500569 | None:intergenic | 50.0% | |
| ATCACAGCAGGATCAGGATG+GGG | - | chr4_1:18500639-18500658 | None:intergenic | 50.0% | |
| CAATCACAGCAGGATCAGGA+TGG | - | chr4_1:18500641-18500660 | None:intergenic | 50.0% | |
| !! | GCATCCTGCCAACTTGTTGA+CGG | - | chr4_1:18500776-18500795 | None:intergenic | 50.0% |
| ! | AACAAGTTGGCAGGATGCCT+GGG | + | chr4_1:18500778-18500797 | Msa0538800:CDS | 50.0% |
| CCAGACTAACAAGTCCGGTT+TGG | - | chr4_1:18501335-18501354 | None:intergenic | 50.0% | |
| !! | CCAAACCGGACTTGTTAGTC+TGG | + | chr4_1:18501332-18501351 | Msa0538800:intron | 50.0% |
| ! | CTTGTTGTGCTAGACTTGGC+TGG | - | chr4_1:18501403-18501422 | None:intergenic | 50.0% |
| TGCCACCTAAGTGCAGGATT+TGG | + | chr4_1:18501544-18501563 | Msa0538800:intron | 50.0% | |
| GCCACCTAAGTGCAGGATTT+GGG | + | chr4_1:18501545-18501564 | Msa0538800:intron | 50.0% | |
| ACCCAAATCCTGCACTTAGG+TGG | - | chr4_1:18501549-18501568 | None:intergenic | 50.0% | |
| AGTCTTTGCCCTCCGTTTAG+TGG | + | chr4_1:18502339-18502358 | Msa0538800:intron | 50.0% | |
| ATCCAGGTCCGAGGTTGAAA+AGG | + | chr4_1:18502458-18502477 | Msa0538800:intron | 50.0% | |
| ! | CTCTCGGACCTTTTCAACCT+CGG | - | chr4_1:18502469-18502488 | None:intergenic | 50.0% |
| TGAAAAGGTCCGAGAGAAGC+AGG | + | chr4_1:18502473-18502492 | Msa0538800:CDS | 50.0% | |
| CCAAAGTGACCTGCTTCTCT+CGG | - | chr4_1:18502485-18502504 | None:intergenic | 50.0% | |
| GCTACCCGCACAAAATTTCC+TGG | - | chr4_1:18502631-18502650 | None:intergenic | 50.0% | |
| AGTGGTGCTTATGCGGTACC+TGG | + | chr4_1:18499877-18499896 | Msa0538800:CDS | 55.0% | |
| TTATCTCGGGCTGTGCCTCT+TGG | + | chr4_1:18500006-18500025 | Msa0538800:CDS | 55.0% | |
| TTGGTGTGGATGCCGTTGAG+AGG | + | chr4_1:18500535-18500554 | Msa0538800:CDS | 55.0% | |
| ! | CAACAAGTTGGCAGGATGCC+TGG | + | chr4_1:18500777-18500796 | Msa0538800:CDS | 55.0% |
| ! | ACAAGTTGGCAGGATGCCTG+GGG | + | chr4_1:18500779-18500798 | Msa0538800:CDS | 55.0% |
| !! | GGTGATGGAGGCTGCAATGA+AGG | - | chr4_1:18501574-18501593 | None:intergenic | 55.0% |
| !! | TTTCGAGGGAGGGAGTACCA+GGG | - | chr4_1:18501886-18501905 | None:intergenic | 55.0% |
| !!! | TTTTCGAGGGAGGGAGTACC+AGG | - | chr4_1:18501887-18501906 | None:intergenic | 55.0% |
| ! | TCCAACCTGGCGCTTTTCGA+GGG | - | chr4_1:18501900-18501919 | None:intergenic | 55.0% |
| !! | TGGTTTTGCTCCGCCAATGG+AGG | + | chr4_1:18501995-18502014 | Msa0538800:intron | 55.0% |
| ! | GACCTTTTCAACCTCGGACC+TGG | - | chr4_1:18502463-18502482 | None:intergenic | 55.0% |
| CCGAGAGAAGCAGGTCACTT+TGG | + | chr4_1:18502482-18502501 | Msa0538800:CDS | 55.0% | |
| CGATGCTTGCTTTCCGTCGG+AGG | + | chr4_1:18499783-18499802 | Msa0538800:CDS | 60.0% | |
| GGTGGAGATGCCGAGGCTAA+TGG | + | chr4_1:18499823-18499842 | Msa0538800:CDS | 60.0% | |
| GGATGCCGTTGAGAGGATGC+TGG | + | chr4_1:18500542-18500561 | Msa0538800:CDS | 60.0% | |
| TGCCGTTGAGAGGATGCTGG+AGG | + | chr4_1:18500545-18500564 | Msa0538800:CDS | 60.0% | |
| !! | ACCTGGCGCTTTTCGAGGGA+GGG | - | chr4_1:18501896-18501915 | None:intergenic | 60.0% |
| !! | AACCTGGCGCTTTTCGAGGG+AGG | - | chr4_1:18501897-18501916 | None:intergenic | 60.0% |
| !! | TCCCTCGAAAAGCGCCAGGT+TGG | + | chr4_1:18501896-18501915 | Msa0538800:intron | 60.0% |
| ! | GTCCAACCTGGCGCTTTTCG+AGG | - | chr4_1:18501901-18501920 | None:intergenic | 60.0% |
| CAGCGCGTGTCTCCCTGTCT+TGG | + | chr4_1:18501287-18501306 | Msa0538800:intron | 65.0% | |
| !! | TCCCTCCCTCGAAAAGCGCC+AGG | + | chr4_1:18501892-18501911 | Msa0538800:intron | 65.0% |
| GTGCGGGTAGCAGCTCTTCC+TGG | + | chr4_1:18502640-18502659 | Msa0538800:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 18499494 | 18502721 | 18499494 | ID=Msa0538800;Name=Msa0538800 |
| chr4_1 | mRNA | 18499494 | 18502721 | 18499494 | ID=Msa0538800-mRNA-1;Parent=Msa0538800;Name=Msa0538800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=104|1|1|1|0.5|0.66|3|8|579 |
| chr4_1 | exon | 18499494 | 18501001 | 18499494 | ID=Msa0538800-mRNA-1:exon:5468;Parent=Msa0538800-mRNA-1 |
| chr4_1 | exon | 18501108 | 18501193 | 18501108 | ID=Msa0538800-mRNA-1:exon:5469;Parent=Msa0538800-mRNA-1 |
| chr4_1 | exon | 18502464 | 18502721 | 18502464 | ID=Msa0538800-mRNA-1:exon:5470;Parent=Msa0538800-mRNA-1 |
| chr4_1 | five_prime_UTR | 18499494 | 18499597 | 18499494 | ID=Msa0538800-mRNA-1:five_prime_utr;Parent=Msa0538800-mRNA-1 |
| chr4_1 | CDS | 18499598 | 18501001 | 18499598 | ID=Msa0538800-mRNA-1:cds;Parent=Msa0538800-mRNA-1 |
| chr4_1 | CDS | 18501108 | 18501193 | 18501108 | ID=Msa0538800-mRNA-1:cds;Parent=Msa0538800-mRNA-1 |
| chr4_1 | CDS | 18502464 | 18502713 | 18502464 | ID=Msa0538800-mRNA-1:cds;Parent=Msa0538800-mRNA-1 |
| chr4_1 | three_prime_UTR | 18502714 | 18502721 | 18502714 | ID=Msa0538800-mRNA-1:three_prime_utr;Parent=Msa0538800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
