Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486670 | ACJ85042.1 | 98.958 | 96 | 1 | 0 | 1 | 96 | 1 | 96 | 2.02e-61 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486670 | B7FJW3 | 98.958 | 96 | 1 | 0 | 1 | 96 | 1 | 96 | 9.63e-62 | 199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0486670 | 0.811699 | 6.144878e-51 | -8.615850e-47 |
| Msa0003220 | Msa0486670 | 0.810147 | 1.331937e-50 | -8.615850e-47 |
| Msa0008220 | Msa0486670 | 0.800321 | 1.522728e-48 | -8.615850e-47 |
| Msa0031820 | Msa0486670 | 0.810406 | 1.170907e-50 | -8.615850e-47 |
| Msa0039250 | Msa0486670 | 0.820894 | 5.388776e-53 | -8.615850e-47 |
| Msa0041690 | Msa0486670 | 0.824682 | 7.070139e-54 | -8.615850e-47 |
| Msa0054820 | Msa0486670 | 0.815011 | 1.150194e-51 | -8.615850e-47 |
| Msa0056450 | Msa0486670 | 0.813588 | 2.372631e-51 | -8.615850e-47 |
| Msa0081650 | Msa0486670 | 0.800119 | 1.673486e-48 | -8.615850e-47 |
| Msa0085370 | Msa0486670 | 0.816432 | 5.548170e-52 | -8.615850e-47 |
| Msa0106620 | Msa0486670 | 0.806280 | 8.879669e-50 | -8.615850e-47 |
| Msa0116790 | Msa0486670 | 0.838943 | 2.129155e-57 | -8.615850e-47 |
| Msa0133720 | Msa0486670 | 0.832965 | 6.995650e-56 | -8.615850e-47 |
| Msa0133820 | Msa0486670 | 0.849184 | 3.804674e-60 | -8.615850e-47 |
| Msa0143850 | Msa0486670 | 0.818928 | 1.517437e-52 | -8.615850e-47 |
| Msa0177750 | Msa0486670 | 0.808929 | 2.432366e-50 | -8.615850e-47 |
| Msa0187030 | Msa0486670 | 0.838890 | 2.197339e-57 | -8.615850e-47 |
| Msa0225220 | Msa0486670 | 0.841516 | 4.531537e-58 | -8.615850e-47 |
| Msa0225640 | Msa0486670 | 0.817194 | 3.742595e-52 | -8.615850e-47 |
| Msa0379610 | Msa0486670 | 0.805496 | 1.298163e-49 | -8.615850e-47 |
| Msa0389910 | Msa0486670 | 0.813744 | 2.192073e-51 | -8.615850e-47 |
| Msa0411410 | Msa0486670 | 0.935169 | 1.292681e-96 | -8.615850e-47 |
| Msa0430870 | Msa0486670 | 0.801943 | 7.093398e-49 | -8.615850e-47 |
| Msa0451070 | Msa0486670 | 0.806498 | 7.989843e-50 | -8.615850e-47 |
| Msa0455740 | Msa0486670 | 0.852273 | 5.145404e-61 | -8.615850e-47 |
| Msa0473330 | Msa0486670 | 0.806550 | 7.790399e-50 | -8.615850e-47 |
| Msa0473980 | Msa0486670 | 0.822333 | 2.505014e-53 | -8.615850e-47 |
| Msa0305330 | Msa0486670 | 0.833428 | 5.362884e-56 | -8.615850e-47 |
| Msa0342010 | Msa0486670 | 0.852835 | 3.556522e-61 | -8.615850e-47 |
| Msa0363810 | Msa0486670 | 0.953513 | 2.322088e-111 | -8.615850e-47 |
| Msa0486670 | Msa0576680 | 0.824336 | 8.530017e-54 | -8.615850e-47 |
| Msa0486670 | Msa0579660 | 0.818140 | 2.289157e-52 | -8.615850e-47 |
| Msa0486670 | Msa0597770 | 0.807937 | 3.960570e-50 | -8.615850e-47 |
| Msa0486670 | Msa0661320 | 0.804886 | 1.741586e-49 | -8.615850e-47 |
| Msa0486670 | Msa0679100 | 0.805636 | 1.212843e-49 | -8.615850e-47 |
| Msa0486670 | Msa0689760 | 0.845656 | 3.544394e-59 | -8.615850e-47 |
| Msa0486670 | Msa0698100 | 0.802468 | 5.530714e-49 | -8.615850e-47 |
| Msa0486670 | Msa0712560 | 0.801607 | 8.315375e-49 | -8.615850e-47 |
| Msa0486670 | Msa0716860 | 0.845889 | 3.063999e-59 | -8.615850e-47 |
| Msa0486670 | Msa0749400 | 0.811853 | 5.687597e-51 | -8.615850e-47 |
| Msa0486670 | Msa0751260 | 0.841243 | 5.347084e-58 | -8.615850e-47 |
| Msa0486670 | Msa0757800 | 0.804355 | 2.248255e-49 | -8.615850e-47 |
| Msa0486670 | Msa0789560 | 0.806378 | 8.468605e-50 | -8.615850e-47 |
| Msa0486670 | Msa0795070 | 0.822253 | 2.615285e-53 | -8.615850e-47 |
| Msa0486670 | Msa0800700 | 0.836700 | 8.024448e-57 | -8.615850e-47 |
| Msa0486670 | Msa0868160 | 0.804381 | 2.219907e-49 | -8.615850e-47 |
| Msa0486670 | Msa0932350 | 0.809100 | 2.235417e-50 | -8.615850e-47 |
| Msa0486670 | Msa0965850 | 0.805959 | 1.037520e-49 | -8.615850e-47 |
| Msa0486670 | Msa0969330 | 0.823350 | 1.452405e-53 | -8.615850e-47 |
| Msa0486670 | Msa0971650 | 0.805776 | 1.133569e-49 | -8.615850e-47 |
| Msa0486670 | Msa1003340 | 0.800381 | 1.480350e-48 | -8.615850e-47 |
| Msa0486670 | Msa1010070 | 0.815451 | 9.181706e-52 | -8.615850e-47 |
| Msa0486670 | Msa1027360 | 0.840399 | 8.901278e-58 | -8.615850e-47 |
| Msa0486670 | Msa1046440 | 0.801460 | 8.910072e-49 | -8.615850e-47 |
| Msa0486670 | Msa1095790 | 0.821087 | 4.865839e-53 | -8.615850e-47 |
| Msa0486670 | Msa1098890 | 0.806769 | 7.004539e-50 | -8.615850e-47 |
| Msa0486670 | Msa1129690 | 0.809517 | 1.819280e-50 | -8.615850e-47 |
| Msa0486670 | Msa1201640 | 0.800581 | 1.347439e-48 | -8.615850e-47 |
| Msa0486670 | Msa1208790 | 0.821932 | 3.104273e-53 | -8.615850e-47 |
| Msa0486670 | Msa1211340 | 0.823714 | 1.193835e-53 | -8.615850e-47 |
| Msa0486670 | Msa1259640 | 0.817923 | 2.563553e-52 | -8.615850e-47 |
| Msa0486670 | Msa1299330 | 0.805636 | 1.213384e-49 | -8.615850e-47 |
| Msa0486670 | Msa1320820 | 0.820287 | 7.428984e-53 | -8.615850e-47 |
| Msa0486670 | Msa1329790 | 0.818175 | 2.248531e-52 | -8.615850e-47 |
| Msa0486670 | Msa1338250 | 0.800603 | 1.333760e-48 | -8.615850e-47 |
| Msa0486670 | Msa1344310 | 0.810423 | 1.161416e-50 | -8.615850e-47 |
| Msa0486670 | Msa1420250 | 0.841693 | 4.071546e-58 | -8.615850e-47 |
| Msa0486670 | Msa1446780 | 0.819828 | 9.459345e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486670 | MtrunA17_Chr3g0102691 | 96.939 | 98 | 3 | 0 | 1 | 98 | 1 | 98 | 8.12e-65 | 199 |
| Msa0486670 | MtrunA17_Chr4g0075941 | 60.000 | 100 | 39 | 1 | 1 | 99 | 1 | 100 | 1.43e-39 | 129 |
| Msa0486670 | MtrunA17_Chr4g0076441 | 60.000 | 100 | 39 | 1 | 1 | 99 | 1 | 100 | 6.72e-38 | 129 |
| Msa0486670 | MtrunA17_Chr2g0290661 | 60.606 | 99 | 38 | 1 | 2 | 99 | 7 | 105 | 4.36e-37 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486670 | AT1G55840.1 | 61.616 | 99 | 37 | 1 | 2 | 99 | 7 | 105 | 1.69e-41 | 139 |
| Msa0486670 | AT5G47730.4 | 60.606 | 99 | 38 | 1 | 2 | 99 | 7 | 105 | 1.31e-36 | 126 |
| Msa0486670 | AT5G47730.1 | 60.606 | 99 | 38 | 1 | 2 | 99 | 7 | 105 | 1.31e-36 | 126 |
| Msa0486670 | AT1G55840.2 | 67.532 | 77 | 24 | 1 | 24 | 99 | 2 | 78 | 1.40e-33 | 117 |
| Msa0486670 | AT5G47730.2 | 70.000 | 50 | 14 | 1 | 51 | 99 | 1 | 50 | 9.01e-19 | 78.6 |
| Msa0486670 | AT5G47730.3 | 70.000 | 50 | 14 | 1 | 51 | 99 | 1 | 50 | 9.01e-19 | 78.6 |
Find 25 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGTCTTTGATGGAAAA+TGG | 0.286433 | 3_4:+4726745 | Msa0486670:CDS |
| TAAGCAGTTGCAGTCTTTGA+TGG | 0.306038 | 3_4:+4726738 | Msa0486670:CDS |
| ACTCTATTTATTCATTTGTC+TGG | 0.306882 | 3_4:+4726436 | Msa0486670:five_prime_UTR |
| GCAACAGAAGATTGCATTCA+AGG | 0.343791 | 3_4:+4726868 | Msa0486670:CDS |
| GCTTCCTATGTTGAAACTAT+AGG | 0.401617 | 3_4:-4726512 | None:intergenic |
| TTGTACAAATCCGCAGGAAT+TGG | 0.405764 | 3_4:-4728041 | None:intergenic |
| GTGCGAGATTCTCAACTCAT+AGG | 0.475225 | 3_4:+4728068 | Msa0486670:CDS |
| GGGATACCCTACTGAAATGT+TGG | 0.504243 | 3_4:+4727598 | Msa0486670:CDS |
| TCTCAACTCATAGGAATGTC+CGG | 0.506270 | 3_4:+4728077 | Msa0486670:CDS |
| TATATTTCAGAATCTGCACC+AGG | 0.513856 | 3_4:+4727577 | Msa0486670:intron |
| ACATTTCAGTAGGGTATCCC+TGG | 0.537126 | 3_4:-4727595 | None:intergenic |
| GGCACGATTTCTCAAAGCTA+GGG | 0.540499 | 3_4:+4727619 | Msa0486670:CDS |
| AATCGTGCCAACATTTCAGT+AGG | 0.554479 | 3_4:-4727605 | None:intergenic |
| TGATTGTTTACATTGGAGAG+TGG | 0.555854 | 3_4:+4727781 | Msa0486670:CDS |
| GATTTCTCAAAGCTAGGGAC+GGG | 0.571459 | 3_4:+4727624 | Msa0486670:CDS |
| TGGCACGATTTCTCAAAGCT+AGG | 0.581370 | 3_4:+4727618 | Msa0486670:CDS |
| AATGTCCGGTTACACAAAAG+AGG | 0.582946 | 3_4:+4728091 | Msa0486670:CDS |
| AGTTAATTGATTGTTTACAT+TGG | 0.588126 | 3_4:+4727774 | Msa0486670:intron |
| CGATTTCTCAAAGCTAGGGA+CGG | 0.592978 | 3_4:+4727623 | Msa0486670:CDS |
| ACAGGTTTGTACAAATCCGC+AGG | 0.597594 | 3_4:-4728047 | None:intergenic |
| ATGAGTTGAGAATCTCGCAC+AGG | 0.608198 | 3_4:-4728065 | None:intergenic |
| ACATCCTATAGTTTCAACAT+AGG | 0.611986 | 3_4:+4726508 | Msa0486670:five_prime_UTR |
| ATCGTGCCAACATTTCAGTA+GGG | 0.638800 | 3_4:-4727604 | None:intergenic |
| ATAGCAGAAACCAATTCCTG+CGG | 0.702765 | 3_4:+4728031 | Msa0486670:intron |
| ATATTTCAGAATCTGCACCA+GGG | 0.705098 | 3_4:+4727578 | Msa0486670:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAAAGATTAAATTTTTAC+AGG | - | chr3_4:4726643-4726662 | None:intergenic | 15.0% |
| !! | AAAAATTGAAATTTGCAAAT+GGG | - | chr3_4:4726691-4726710 | None:intergenic | 15.0% |
| !! | AAAAAATTGAAATTTGCAAA+TGG | - | chr3_4:4726692-4726711 | None:intergenic | 15.0% |
| !!! | ATTCTGAAATATAAAATGAA+AGG | - | chr3_4:4727570-4727589 | None:intergenic | 15.0% |
| !!! | GAAAAAGATTAAATTTTTAC+AGG | - | chr3_4:4726643-4726662 | None:intergenic | 15.0% |
| !! | AAAAATTGAAATTTGCAAAT+GGG | - | chr3_4:4726691-4726710 | None:intergenic | 15.0% |
| !! | AAAAAATTGAAATTTGCAAA+TGG | - | chr3_4:4726692-4726711 | None:intergenic | 15.0% |
| !!! | ATTCTGAAATATAAAATGAA+AGG | - | chr3_4:4727570-4727589 | None:intergenic | 15.0% |
| !! | GTAAAGAAAGAAAAATTAGT+GGG | - | chr3_4:4726471-4726490 | None:intergenic | 20.0% |
| !! | TGTAAAGAAAGAAAAATTAG+TGG | - | chr3_4:4726472-4726491 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGTTTTTCACATA+TGG | - | chr3_4:4726565-4726584 | None:intergenic | 20.0% |
| !! | TTACAGCAAAATTAAACTAT+TGG | - | chr3_4:4727004-4727023 | None:intergenic | 20.0% |
| !! | GTAAAATTGATCTTGATTTA+TGG | + | chr3_4:4727020-4727039 | Msa0486670:intron | 20.0% |
| !!! | AAGTTGCTAAGAATTTTTTT+AGG | + | chr3_4:4727050-4727069 | Msa0486670:intron | 20.0% |
| !!! | AGTTGCTAAGAATTTTTTTA+GGG | + | chr3_4:4727051-4727070 | Msa0486670:intron | 20.0% |
| !! | AAATTGAAACATCCTTAATT+AGG | - | chr3_4:4727148-4727167 | None:intergenic | 20.0% |
| !!! | TTTTCATATATGCTATAACT+TGG | - | chr3_4:4727378-4727397 | None:intergenic | 20.0% |
| !!! | TTAAGTTTTTTATTCGAACA+TGG | + | chr3_4:4727470-4727489 | Msa0486670:intron | 20.0% |
| !! | AGTTAATTGATTGTTTACAT+TGG | + | chr3_4:4727774-4727793 | Msa0486670:intron | 20.0% |
| !! | GTAAAGAAAGAAAAATTAGT+GGG | - | chr3_4:4726471-4726490 | None:intergenic | 20.0% |
| !! | TGTAAAGAAAGAAAAATTAG+TGG | - | chr3_4:4726472-4726491 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGTTTTTCACATA+TGG | - | chr3_4:4726565-4726584 | None:intergenic | 20.0% |
| !! | TTACAGCAAAATTAAACTAT+TGG | - | chr3_4:4727004-4727023 | None:intergenic | 20.0% |
| !! | GTAAAATTGATCTTGATTTA+TGG | + | chr3_4:4727020-4727039 | Msa0486670:intron | 20.0% |
| !!! | AAGTTGCTAAGAATTTTTTT+AGG | + | chr3_4:4727050-4727069 | Msa0486670:intron | 20.0% |
| !!! | AGTTGCTAAGAATTTTTTTA+GGG | + | chr3_4:4727051-4727070 | Msa0486670:intron | 20.0% |
| !! | AAATTGAAACATCCTTAATT+AGG | - | chr3_4:4727148-4727167 | None:intergenic | 20.0% |
| !!! | TTTTCATATATGCTATAACT+TGG | - | chr3_4:4727378-4727397 | None:intergenic | 20.0% |
| !!! | TTAAGTTTTTTATTCGAACA+TGG | + | chr3_4:4727470-4727489 | Msa0486670:intron | 20.0% |
| !! | AGTTAATTGATTGTTTACAT+TGG | + | chr3_4:4727774-4727793 | Msa0486670:intron | 20.0% |
| ! | ACTCTATTTATTCATTTGTC+TGG | + | chr3_4:4726436-4726455 | Msa0486670:five_prime_UTR | 25.0% |
| !!! | TTTTTCAGTATAGAAGAAGA+TGG | + | chr3_4:4726708-4726727 | Msa0486670:intron | 25.0% |
| ! | TTGTTGATCATTGACAAATT+TGG | + | chr3_4:4726819-4726838 | Msa0486670:intron | 25.0% |
| ! | TACCAAAACAAAAATTGTAG+AGG | - | chr3_4:4727197-4727216 | None:intergenic | 25.0% |
| !!! | TTTGGTAATTCATTTTTGAC+CGG | + | chr3_4:4727210-4727229 | Msa0486670:intron | 25.0% |
| ! | ACATACTATTTACTTAACTG+AGG | - | chr3_4:4727496-4727515 | None:intergenic | 25.0% |
| ! | AATATAAAATGAAAGGCTTC+AGG | - | chr3_4:4727563-4727582 | None:intergenic | 25.0% |
| ! | AAGAAAAAACTGTGAAATGA+GGG | - | chr3_4:4727840-4727859 | None:intergenic | 25.0% |
| ! | ACTCTATTTATTCATTTGTC+TGG | + | chr3_4:4726436-4726455 | Msa0486670:five_prime_UTR | 25.0% |
| !!! | TTTTTCAGTATAGAAGAAGA+TGG | + | chr3_4:4726708-4726727 | Msa0486670:intron | 25.0% |
| ! | TTGTTGATCATTGACAAATT+TGG | + | chr3_4:4726819-4726838 | Msa0486670:intron | 25.0% |
| ! | TACCAAAACAAAAATTGTAG+AGG | - | chr3_4:4727197-4727216 | None:intergenic | 25.0% |
| !!! | TTTGGTAATTCATTTTTGAC+CGG | + | chr3_4:4727210-4727229 | Msa0486670:intron | 25.0% |
| ! | ACATACTATTTACTTAACTG+AGG | - | chr3_4:4727496-4727515 | None:intergenic | 25.0% |
| ! | AATATAAAATGAAAGGCTTC+AGG | - | chr3_4:4727563-4727582 | None:intergenic | 25.0% |
| ! | AAGAAAAAACTGTGAAATGA+GGG | - | chr3_4:4727840-4727859 | None:intergenic | 25.0% |
| ACATCCTATAGTTTCAACAT+AGG | + | chr3_4:4726508-4726527 | Msa0486670:five_prime_UTR | 30.0% | |
| ! | CATATGGCTATCTATGTTTT+TGG | - | chr3_4:4726549-4726568 | None:intergenic | 30.0% |
| TACAGGATTAAGACAGAAAA+AGG | - | chr3_4:4726626-4726645 | None:intergenic | 30.0% | |
| TAGAAAAACAGAAGAATGCA+AGG | - | chr3_4:4726791-4726810 | None:intergenic | 30.0% | |
| !!! | GCTAAGAATTTTTTTAGGGA+TGG | + | chr3_4:4727055-4727074 | Msa0486670:intron | 30.0% |
| ! | AGTGATTTTGCACCTAATTA+AGG | + | chr3_4:4727133-4727152 | Msa0486670:intron | 30.0% |
| !! | AGCCTCTACAATTTTTGTTT+TGG | + | chr3_4:4727192-4727211 | Msa0486670:intron | 30.0% |
| ! | TTGTTTTCATTAGCAACCAA+AGG | - | chr3_4:4727291-4727310 | None:intergenic | 30.0% |
| GCGAATAATATTAGTAAGAC+GGG | - | chr3_4:4727520-4727539 | None:intergenic | 30.0% | |
| GGCGAATAATATTAGTAAGA+CGG | - | chr3_4:4727521-4727540 | None:intergenic | 30.0% | |
| !!! | ACTAACCATTTTTTGAGCTT+TGG | - | chr3_4:4727657-4727676 | None:intergenic | 30.0% |
| TCTTAGATGGAATTTCAGAT+AGG | + | chr3_4:4727699-4727718 | Msa0486670:intron | 30.0% | |
| !! | TGAGATTGACAAAGTTTTAG+CGG | + | chr3_4:4727808-4727827 | Msa0486670:CDS | 30.0% |
| GAAGAAAAAACTGTGAAATG+AGG | - | chr3_4:4727841-4727860 | None:intergenic | 30.0% | |
| ! | TTACGCATCTGAATCTATTT+TGG | + | chr3_4:4727925-4727944 | Msa0486670:intron | 30.0% |
| TTGGTTTCTGCTATACAAAA+AGG | - | chr3_4:4728025-4728044 | None:intergenic | 30.0% | |
| ACATCCTATAGTTTCAACAT+AGG | + | chr3_4:4726508-4726527 | Msa0486670:five_prime_UTR | 30.0% | |
| ! | CATATGGCTATCTATGTTTT+TGG | - | chr3_4:4726549-4726568 | None:intergenic | 30.0% |
| TACAGGATTAAGACAGAAAA+AGG | - | chr3_4:4726626-4726645 | None:intergenic | 30.0% | |
| TAGAAAAACAGAAGAATGCA+AGG | - | chr3_4:4726791-4726810 | None:intergenic | 30.0% | |
| !!! | GCTAAGAATTTTTTTAGGGA+TGG | + | chr3_4:4727055-4727074 | Msa0486670:intron | 30.0% |
| ! | AGTGATTTTGCACCTAATTA+AGG | + | chr3_4:4727133-4727152 | Msa0486670:intron | 30.0% |
| !! | AGCCTCTACAATTTTTGTTT+TGG | + | chr3_4:4727192-4727211 | Msa0486670:intron | 30.0% |
| ! | TTGTTTTCATTAGCAACCAA+AGG | - | chr3_4:4727291-4727310 | None:intergenic | 30.0% |
| GCGAATAATATTAGTAAGAC+GGG | - | chr3_4:4727520-4727539 | None:intergenic | 30.0% | |
| GGCGAATAATATTAGTAAGA+CGG | - | chr3_4:4727521-4727540 | None:intergenic | 30.0% | |
| !!! | ACTAACCATTTTTTGAGCTT+TGG | - | chr3_4:4727657-4727676 | None:intergenic | 30.0% |
| TCTTAGATGGAATTTCAGAT+AGG | + | chr3_4:4727699-4727718 | Msa0486670:intron | 30.0% | |
| !! | TGAGATTGACAAAGTTTTAG+CGG | + | chr3_4:4727808-4727827 | Msa0486670:CDS | 30.0% |
| GAAGAAAAAACTGTGAAATG+AGG | - | chr3_4:4727841-4727860 | None:intergenic | 30.0% | |
| ! | TTACGCATCTGAATCTATTT+TGG | + | chr3_4:4727925-4727944 | Msa0486670:intron | 30.0% |
| TTGGTTTCTGCTATACAAAA+AGG | - | chr3_4:4728025-4728044 | None:intergenic | 30.0% | |
| GCTTCCTATGTTGAAACTAT+AGG | - | chr3_4:4726515-4726534 | None:intergenic | 35.0% | |
| ! | AGCTAGAATCTTTTCACACA+AGG | + | chr3_4:4726584-4726603 | Msa0486670:five_prime_UTR | 35.0% |
| ! | GCTAGAATCTTTTCACACAA+GGG | + | chr3_4:4726585-4726604 | Msa0486670:five_prime_UTR | 35.0% |
| GGATTAAGACAGAAAAAGGA+AGG | - | chr3_4:4726622-4726641 | None:intergenic | 35.0% | |
| TTGCAGTCTTTGATGGAAAA+TGG | + | chr3_4:4726745-4726764 | Msa0486670:CDS | 35.0% | |
| AGAAGATTGCATTCAAGGTT+TGG | + | chr3_4:4726873-4726892 | Msa0486670:intron | 35.0% | |
| !!! | GTTTGGTTTTTGCTTGATCT+TGG | + | chr3_4:4726890-4726909 | Msa0486670:intron | 35.0% |
| TTAGGGATGGTTGATTGTAA+AGG | + | chr3_4:4727068-4727087 | Msa0486670:intron | 35.0% | |
| TAGGGATGGTTGATTGTAAA+GGG | + | chr3_4:4727069-4727088 | Msa0486670:intron | 35.0% | |
| ACAACTTGCATATCTTCCTT+TGG | + | chr3_4:4727272-4727291 | Msa0486670:intron | 35.0% | |
| CTTGGTTTCATAAGCTATCT+TGG | - | chr3_4:4727360-4727379 | None:intergenic | 35.0% | |
| TTCAGGACCAAAAAAAACTC+AGG | - | chr3_4:4727546-4727565 | None:intergenic | 35.0% | |
| TATATTTCAGAATCTGCACC+AGG | + | chr3_4:4727577-4727596 | Msa0486670:intron | 35.0% | |
| ATATTTCAGAATCTGCACCA+GGG | + | chr3_4:4727578-4727597 | Msa0486670:intron | 35.0% | |
| TGTTGCCAAAGCTCAAAAAA+TGG | + | chr3_4:4727649-4727668 | Msa0486670:CDS | 35.0% | |
| ATGTCTAGTGAAGTCTTAGA+TGG | + | chr3_4:4727686-4727705 | Msa0486670:intron | 35.0% | |
| AGATGGAATTTCAGATAGGT+TGG | + | chr3_4:4727703-4727722 | Msa0486670:intron | 35.0% | |
| TGATTGTTTACATTGGAGAG+TGG | + | chr3_4:4727781-4727800 | Msa0486670:CDS | 35.0% | |
| ! | TAGTACCTCTTTTGTGTAAC+CGG | - | chr3_4:4728099-4728118 | None:intergenic | 35.0% |
| GCTTCCTATGTTGAAACTAT+AGG | - | chr3_4:4726515-4726534 | None:intergenic | 35.0% | |
| ! | AGCTAGAATCTTTTCACACA+AGG | + | chr3_4:4726584-4726603 | Msa0486670:five_prime_UTR | 35.0% |
| ! | GCTAGAATCTTTTCACACAA+GGG | + | chr3_4:4726585-4726604 | Msa0486670:five_prime_UTR | 35.0% |
| GGATTAAGACAGAAAAAGGA+AGG | - | chr3_4:4726622-4726641 | None:intergenic | 35.0% | |
| TTGCAGTCTTTGATGGAAAA+TGG | + | chr3_4:4726745-4726764 | Msa0486670:CDS | 35.0% | |
| AGAAGATTGCATTCAAGGTT+TGG | + | chr3_4:4726873-4726892 | Msa0486670:intron | 35.0% | |
| !!! | GTTTGGTTTTTGCTTGATCT+TGG | + | chr3_4:4726890-4726909 | Msa0486670:intron | 35.0% |
| TTAGGGATGGTTGATTGTAA+AGG | + | chr3_4:4727068-4727087 | Msa0486670:intron | 35.0% | |
| TAGGGATGGTTGATTGTAAA+GGG | + | chr3_4:4727069-4727088 | Msa0486670:intron | 35.0% | |
| ACAACTTGCATATCTTCCTT+TGG | + | chr3_4:4727272-4727291 | Msa0486670:intron | 35.0% | |
| CTTGGTTTCATAAGCTATCT+TGG | - | chr3_4:4727360-4727379 | None:intergenic | 35.0% | |
| TTCAGGACCAAAAAAAACTC+AGG | - | chr3_4:4727546-4727565 | None:intergenic | 35.0% | |
| TATATTTCAGAATCTGCACC+AGG | + | chr3_4:4727577-4727596 | Msa0486670:intron | 35.0% | |
| ATATTTCAGAATCTGCACCA+GGG | + | chr3_4:4727578-4727597 | Msa0486670:intron | 35.0% | |
| TGTTGCCAAAGCTCAAAAAA+TGG | + | chr3_4:4727649-4727668 | Msa0486670:CDS | 35.0% | |
| ATGTCTAGTGAAGTCTTAGA+TGG | + | chr3_4:4727686-4727705 | Msa0486670:intron | 35.0% | |
| AGATGGAATTTCAGATAGGT+TGG | + | chr3_4:4727703-4727722 | Msa0486670:intron | 35.0% | |
| TGATTGTTTACATTGGAGAG+TGG | + | chr3_4:4727781-4727800 | Msa0486670:CDS | 35.0% | |
| ! | TAGTACCTCTTTTGTGTAAC+CGG | - | chr3_4:4728099-4728118 | None:intergenic | 35.0% |
| TAAGCAGTTGCAGTCTTTGA+TGG | + | chr3_4:4726738-4726757 | Msa0486670:CDS | 40.0% | |
| GCAACAGAAGATTGCATTCA+AGG | + | chr3_4:4726868-4726887 | Msa0486670:CDS | 40.0% | |
| GGACCAAAAAAAACTCAGGA+CGG | - | chr3_4:4727542-4727561 | None:intergenic | 40.0% | |
| ATCGTGCCAACATTTCAGTA+GGG | - | chr3_4:4727607-4727626 | None:intergenic | 40.0% | |
| AATCGTGCCAACATTTCAGT+AGG | - | chr3_4:4727608-4727627 | None:intergenic | 40.0% | |
| !! | TCAGATAGGTTGGTTACTCT+TGG | + | chr3_4:4727713-4727732 | Msa0486670:intron | 40.0% |
| ATAGCAGAAACCAATTCCTG+CGG | + | chr3_4:4728031-4728050 | Msa0486670:intron | 40.0% | |
| TTGTACAAATCCGCAGGAAT+TGG | - | chr3_4:4728044-4728063 | None:intergenic | 40.0% | |
| TCTCAACTCATAGGAATGTC+CGG | + | chr3_4:4728077-4728096 | Msa0486670:CDS | 40.0% | |
| AATGTCCGGTTACACAAAAG+AGG | + | chr3_4:4728091-4728110 | Msa0486670:CDS | 40.0% | |
| TAAGCAGTTGCAGTCTTTGA+TGG | + | chr3_4:4726738-4726757 | Msa0486670:CDS | 40.0% | |
| GCAACAGAAGATTGCATTCA+AGG | + | chr3_4:4726868-4726887 | Msa0486670:CDS | 40.0% | |
| GGACCAAAAAAAACTCAGGA+CGG | - | chr3_4:4727542-4727561 | None:intergenic | 40.0% | |
| ATCGTGCCAACATTTCAGTA+GGG | - | chr3_4:4727607-4727626 | None:intergenic | 40.0% | |
| AATCGTGCCAACATTTCAGT+AGG | - | chr3_4:4727608-4727627 | None:intergenic | 40.0% | |
| !! | TCAGATAGGTTGGTTACTCT+TGG | + | chr3_4:4727713-4727732 | Msa0486670:intron | 40.0% |
| ATAGCAGAAACCAATTCCTG+CGG | + | chr3_4:4728031-4728050 | Msa0486670:intron | 40.0% | |
| TTGTACAAATCCGCAGGAAT+TGG | - | chr3_4:4728044-4728063 | None:intergenic | 40.0% | |
| TCTCAACTCATAGGAATGTC+CGG | + | chr3_4:4728077-4728096 | Msa0486670:CDS | 40.0% | |
| AATGTCCGGTTACACAAAAG+AGG | + | chr3_4:4728091-4728110 | Msa0486670:CDS | 40.0% | |
| !! | AGACGCTTTGAGAGAGCTAA+TGG | + | chr3_4:4727247-4727266 | Msa0486670:intron | 45.0% |
| !!! | TCGCCGTCCTGAGTTTTTTT+TGG | + | chr3_4:4727536-4727555 | Msa0486670:intron | 45.0% |
| ! | ACATTTCAGTAGGGTATCCC+TGG | - | chr3_4:4727598-4727617 | None:intergenic | 45.0% |
| GGGATACCCTACTGAAATGT+TGG | + | chr3_4:4727598-4727617 | Msa0486670:CDS | 45.0% | |
| TGGCACGATTTCTCAAAGCT+AGG | + | chr3_4:4727618-4727637 | Msa0486670:CDS | 45.0% | |
| GGCACGATTTCTCAAAGCTA+GGG | + | chr3_4:4727619-4727638 | Msa0486670:CDS | 45.0% | |
| CGATTTCTCAAAGCTAGGGA+CGG | + | chr3_4:4727623-4727642 | Msa0486670:CDS | 45.0% | |
| GATTTCTCAAAGCTAGGGAC+GGG | + | chr3_4:4727624-4727643 | Msa0486670:CDS | 45.0% | |
| ACAGGTTTGTACAAATCCGC+AGG | - | chr3_4:4728050-4728069 | None:intergenic | 45.0% | |
| ! | ATGAGTTGAGAATCTCGCAC+AGG | - | chr3_4:4728068-4728087 | None:intergenic | 45.0% |
| GTGCGAGATTCTCAACTCAT+AGG | + | chr3_4:4728068-4728087 | Msa0486670:CDS | 45.0% | |
| !! | AGACGCTTTGAGAGAGCTAA+TGG | + | chr3_4:4727247-4727266 | Msa0486670:intron | 45.0% |
| !!! | TCGCCGTCCTGAGTTTTTTT+TGG | + | chr3_4:4727536-4727555 | Msa0486670:intron | 45.0% |
| ! | ACATTTCAGTAGGGTATCCC+TGG | - | chr3_4:4727598-4727617 | None:intergenic | 45.0% |
| GGGATACCCTACTGAAATGT+TGG | + | chr3_4:4727598-4727617 | Msa0486670:CDS | 45.0% | |
| TGGCACGATTTCTCAAAGCT+AGG | + | chr3_4:4727618-4727637 | Msa0486670:CDS | 45.0% | |
| GGCACGATTTCTCAAAGCTA+GGG | + | chr3_4:4727619-4727638 | Msa0486670:CDS | 45.0% | |
| CGATTTCTCAAAGCTAGGGA+CGG | + | chr3_4:4727623-4727642 | Msa0486670:CDS | 45.0% | |
| GATTTCTCAAAGCTAGGGAC+GGG | + | chr3_4:4727624-4727643 | Msa0486670:CDS | 45.0% | |
| ACAGGTTTGTACAAATCCGC+AGG | - | chr3_4:4728050-4728069 | None:intergenic | 45.0% | |
| ! | ATGAGTTGAGAATCTCGCAC+AGG | - | chr3_4:4728068-4728087 | None:intergenic | 45.0% |
| GTGCGAGATTCTCAACTCAT+AGG | + | chr3_4:4728068-4728087 | Msa0486670:CDS | 45.0% | |
| !!! | TATTTTAAATTTATTTATGA+AGG | + | chr3_4:4726969-4726988 | Msa0486670:intron | 5.0% |
| !!! | TATTTTAAATTTATTTATGA+AGG | + | chr3_4:4726969-4726988 | Msa0486670:intron | 5.0% |
| ! | CTCTCAAAGCGTCTCACACG+TGG | - | chr3_4:4727241-4727260 | None:intergenic | 55.0% |
| ! | CTCTCAAAGCGTCTCACACG+TGG | - | chr3_4:4727241-4727260 | None:intergenic | 55.0% |
| CGTCTCACACGTGGTTACGC+CGG | - | chr3_4:4727232-4727251 | None:intergenic | 60.0% | |
| CGTCTCACACGTGGTTACGC+CGG | - | chr3_4:4727232-4727251 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 4726407 | 4728130 | 4726407 | ID=Msa0486670;Name=Msa0486670 |
| chr3_4 | mRNA | 4726407 | 4728130 | 4726407 | ID=Msa0486670-mRNA-1;Parent=Msa0486670;Name=Msa0486670-mRNA-1;_AED=0.42;_eAED=0.42;_QI=211|1|0.83|1|0.8|0.66|6|0|99 |
| chr3_4 | exon | 4726407 | 4726606 | 4726407 | ID=Msa0486670-mRNA-1:exon:1819;Parent=Msa0486670-mRNA-1 |
| chr3_4 | exon | 4726716 | 4726766 | 4726716 | ID=Msa0486670-mRNA-1:exon:1820;Parent=Msa0486670-mRNA-1 |
| chr3_4 | exon | 4726861 | 4726889 | 4726861 | ID=Msa0486670-mRNA-1:exon:1821;Parent=Msa0486670-mRNA-1 |
| chr3_4 | exon | 4727587 | 4727670 | 4727587 | ID=Msa0486670-mRNA-1:exon:1822;Parent=Msa0486670-mRNA-1 |
| chr3_4 | exon | 4727776 | 4727829 | 4727776 | ID=Msa0486670-mRNA-1:exon:1823;Parent=Msa0486670-mRNA-1 |
| chr3_4 | exon | 4728038 | 4728130 | 4728038 | ID=Msa0486670-mRNA-1:exon:1824;Parent=Msa0486670-mRNA-1 |
| chr3_4 | five_prime_UTR | 4726407 | 4726606 | 4726407 | ID=Msa0486670-mRNA-1:five_prime_utr;Parent=Msa0486670-mRNA-1 |
| chr3_4 | five_prime_UTR | 4726716 | 4726726 | 4726716 | ID=Msa0486670-mRNA-1:five_prime_utr;Parent=Msa0486670-mRNA-1 |
| chr3_4 | CDS | 4726727 | 4726766 | 4726727 | ID=Msa0486670-mRNA-1:cds;Parent=Msa0486670-mRNA-1 |
| chr3_4 | CDS | 4726861 | 4726889 | 4726861 | ID=Msa0486670-mRNA-1:cds;Parent=Msa0486670-mRNA-1 |
| chr3_4 | CDS | 4727587 | 4727670 | 4727587 | ID=Msa0486670-mRNA-1:cds;Parent=Msa0486670-mRNA-1 |
| chr3_4 | CDS | 4727776 | 4727829 | 4727776 | ID=Msa0486670-mRNA-1:cds;Parent=Msa0486670-mRNA-1 |
| chr3_4 | CDS | 4728038 | 4728130 | 4728038 | ID=Msa0486670-mRNA-1:cds;Parent=Msa0486670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
