Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116180 | XP_013449734.1 | 96.515 | 373 | 11 | 1 | 1 | 371 | 1 | 373 | 0.0 | 730 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116180 | sp|Q8H1F6|DGP3_ARATH | 63.043 | 368 | 118 | 5 | 21 | 370 | 4 | 371 | 6.73e-165 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116180 | A0A072U235 | 96.515 | 373 | 11 | 1 | 1 | 371 | 1 | 373 | 0.0 | 730 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030400 | Msa1116180 | 0.823400 | 1.413450e-53 | -8.615850e-47 |
| Msa0629980 | Msa1116180 | 0.807438 | 5.054214e-50 | -8.615850e-47 |
| Msa0650360 | Msa1116180 | 0.815287 | 9.988303e-52 | -8.615850e-47 |
| Msa0670690 | Msa1116180 | 0.811186 | 7.940205e-51 | -8.615850e-47 |
| Msa0670700 | Msa1116180 | 0.806411 | 8.332626e-50 | -8.615850e-47 |
| Msa0677840 | Msa1116180 | 0.831904 | 1.281087e-55 | -8.615850e-47 |
| Msa0688550 | Msa1116180 | 0.842554 | 2.408513e-58 | -8.615850e-47 |
| Msa0716780 | Msa1116180 | 0.800526 | 1.382945e-48 | -8.615850e-47 |
| Msa0750380 | Msa1116180 | 0.817216 | 3.698915e-52 | -8.615850e-47 |
| Msa0789800 | Msa1116180 | 0.810735 | 9.942178e-51 | -8.615850e-47 |
| Msa0794460 | Msa1116180 | 0.830303 | 3.167690e-55 | -8.615850e-47 |
| Msa0830720 | Msa1116180 | 0.816239 | 6.127974e-52 | -8.615850e-47 |
| Msa0840630 | Msa1116180 | 0.803998 | 2.667184e-49 | -8.615850e-47 |
| Msa0168900 | Msa1116180 | 0.808719 | 2.697639e-50 | -8.615850e-47 |
| Msa0173760 | Msa1116180 | 0.822117 | 2.812136e-53 | -8.615850e-47 |
| Msa0173850 | Msa1116180 | 0.808799 | 2.592775e-50 | -8.615850e-47 |
| Msa0199740 | Msa1116180 | 0.811602 | 6.450597e-51 | -8.615850e-47 |
| Msa1081700 | Msa1116180 | 0.851384 | 9.191159e-61 | -8.615850e-47 |
| Msa1116180 | Msa1204430 | 0.820570 | 6.398235e-53 | -8.615850e-47 |
| Msa1116180 | Msa1212740 | 0.807894 | 4.044065e-50 | -8.615850e-47 |
| Msa1116180 | Msa1412520 | 0.802929 | 4.443250e-49 | -8.615850e-47 |
| Msa1116180 | Msa1430760 | 0.809069 | 2.270336e-50 | -8.615850e-47 |
| Msa0528740 | Msa1116180 | 0.800486 | 1.409348e-48 | -8.615850e-47 |
| Msa0555980 | Msa1116180 | 0.801459 | 8.916504e-49 | -8.615850e-47 |
| Msa0571250 | Msa1116180 | 0.809745 | 1.625588e-50 | -8.615850e-47 |
| Msa0577230 | Msa1116180 | 0.818283 | 2.125006e-52 | -8.615850e-47 |
| Msa0589640 | Msa1116180 | 0.805163 | 1.523930e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116180 | MtrunA17_Chr7g0259841 | 96.515 | 373 | 11 | 1 | 1 | 371 | 1 | 373 | 0.0 | 730 |
| Msa1116180 | MtrunA17_Chr7g0257311 | 30.222 | 225 | 137 | 5 | 95 | 306 | 24 | 241 | 1.41e-23 | 100 |
| Msa1116180 | MtrunA17_Chr4g0042571 | 26.354 | 277 | 170 | 9 | 108 | 371 | 198 | 453 | 4.47e-16 | 79.7 |
| Msa1116180 | MtrunA17_Chr2g0317811 | 25.979 | 281 | 166 | 9 | 108 | 371 | 206 | 461 | 7.48e-16 | 79.0 |
| Msa1116180 | MtrunA17_Chr1g0170031 | 28.873 | 284 | 156 | 12 | 117 | 370 | 144 | 411 | 7.11e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116180 | AT4G02790.1 | 63.043 | 368 | 118 | 5 | 21 | 370 | 4 | 371 | 6.84e-166 | 468 |
| Msa1116180 | AT2G41670.1 | 32.159 | 227 | 130 | 5 | 95 | 306 | 26 | 243 | 1.18e-26 | 109 |
| Msa1116180 | AT3G07050.1 | 30.584 | 291 | 166 | 11 | 107 | 371 | 128 | 408 | 5.45e-20 | 92.0 |
| Msa1116180 | AT4G10650.1 | 28.774 | 212 | 125 | 7 | 96 | 287 | 27 | 232 | 1.68e-14 | 74.7 |
| Msa1116180 | AT1G52980.1 | 26.374 | 273 | 157 | 11 | 108 | 361 | 208 | 455 | 5.66e-14 | 73.6 |
Find 107 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTGGAGATAGAGAATT+TGG | 0.206923 | 7_3:+63815018 | None:intergenic |
| CACTCAATGTTGTAGATAAT+TGG | 0.235236 | 7_3:-63814513 | Msa1116180:intron |
| CATCATCATCATCTTGCTTA+TGG | 0.251466 | 7_3:-63815044 | Msa1116180:CDS |
| ACTCCTGGCCTTGGAGCTGC+TGG | 0.275454 | 7_3:+63812329 | None:intergenic |
| GGTATTGGACAGTGGTTTCC+TGG | 0.286100 | 7_3:-63814313 | Msa1116180:intron |
| TATAAAAGGTGGGTTCGATT+TGG | 0.299968 | 7_3:-63811454 | Msa1116180:intron |
| ATAAAAGGTGGGTTCGATTT+GGG | 0.304483 | 7_3:-63811453 | Msa1116180:intron |
| AATTGTGGAGAAATTGAAAT+TGG | 0.308735 | 7_3:+63815000 | None:intergenic |
| GAGGGACTGGGACCGATCTT+TGG | 0.309126 | 7_3:-63814464 | Msa1116180:CDS |
| ATTGGCAACAACACATTTGA+TGG | 0.320305 | 7_3:-63814495 | Msa1116180:CDS |
| TGGGAAAGATCTTGAATTGC+TGG | 0.327761 | 7_3:-63811434 | Msa1116180:CDS |
| ATCTCAATCTCCCACCATTC+AGG | 0.333290 | 7_3:-63814917 | Msa1116180:intron |
| TAGGTTTGGTTGGACTTCAT+TGG | 0.373097 | 7_3:-63810867 | Msa1116180:CDS |
| CTGCTAATTCCTTTGCTAAC+CGG | 0.374309 | 7_3:+63813186 | None:intergenic |
| AAATTACGCGAGAGATATTC+AGG | 0.380377 | 7_3:-63810783 | Msa1116180:three_prime_UTR |
| GTTGATGGATGTTGTTATAG+AGG | 0.386526 | 7_3:-63814248 | Msa1116180:CDS |
| CTTGCGCTTCATTTGTTCAA+TGG | 0.387909 | 7_3:-63810938 | Msa1116180:CDS |
| GAGCCTCAAATCTTCATAGA+AGG | 0.393839 | 7_3:+63810698 | None:intergenic |
| GTCACAGTATATCAGTATAC+AGG | 0.400702 | 7_3:+63810740 | None:intergenic |
| CTCAGGTCTCTTGTAACTCC+TGG | 0.403116 | 7_3:+63812314 | None:intergenic |
| CTTGAATTGCTGGATTCTCC+TGG | 0.412669 | 7_3:-63811424 | Msa1116180:CDS |
| GTCTTCTCCAATGGGCAGCT+TGG | 0.417848 | 7_3:-63813321 | Msa1116180:CDS |
| CAAGGAACAACTTAAGTTGA+TGG | 0.420000 | 7_3:-63814263 | Msa1116180:CDS |
| TAGGTTCGAGCTGGAATTGT+TGG | 0.421653 | 7_3:-63812410 | Msa1116180:CDS |
| CTCCAATGGGCAGCTTGGAA+TGG | 0.425085 | 7_3:-63813316 | Msa1116180:intron |
| GATGGTTCCGAAGGAGGGAC+TGG | 0.425895 | 7_3:-63814477 | Msa1116180:CDS |
| AAACCTTCTATGAAGATTTG+AGG | 0.426934 | 7_3:-63810701 | Msa1116180:three_prime_UTR |
| AGCGTCAGAGTCTTGCTTCT+AGG | 0.428489 | 7_3:+63810814 | None:intergenic |
| GGAGATTGAGATTGGAGGGT+TGG | 0.441330 | 7_3:+63814928 | None:intergenic |
| CTTCATTGGAGAGGCCTCCT+AGG | 0.445200 | 7_3:-63810853 | Msa1116180:CDS |
| CTCTCCAATGTCATCACATA+TGG | 0.452328 | 7_3:+63811354 | None:intergenic |
| CAGCTGATGTAAATGTTAAA+CGG | 0.455115 | 7_3:-63813166 | Msa1116180:CDS |
| ATCGGTCCCAGTCCCTCCTT+CGG | 0.468176 | 7_3:+63814470 | None:intergenic |
| TGCCCAGCAGCTCCAAGGCC+AGG | 0.470383 | 7_3:-63812332 | Msa1116180:CDS |
| AACTGCAGATCGAAATGCTT+GGG | 0.470581 | 7_3:-63813376 | Msa1116180:CDS |
| TTATTCCCACCCGCAGTAGC+AGG | 0.476643 | 7_3:-63814978 | Msa1116180:CDS |
| TCTCTTGTAACTCCTGGCCT+TGG | 0.478653 | 7_3:+63812320 | None:intergenic |
| TTAGAAAAGGTAGGTTTGGT+TGG | 0.479606 | 7_3:-63810877 | Msa1116180:CDS |
| TCATATTGCAAAAGCAGAAA+AGG | 0.487875 | 7_3:-63814290 | Msa1116180:CDS |
| CAAAGGACTACTTCCTCGTC+CGG | 0.491033 | 7_3:-63813138 | Msa1116180:intron |
| ACAAAGGTTGTCTTCTCCAA+TGG | 0.491090 | 7_3:-63813330 | Msa1116180:CDS |
| CTCCTGGCCTTGGAGCTGCT+GGG | 0.493561 | 7_3:+63812330 | None:intergenic |
| ATAAATTCTATAACTTCTTG+AGG | 0.500346 | 7_3:+63810486 | None:intergenic |
| CGGACGAGGAAGTAGTCCTT+TGG | 0.500629 | 7_3:+63813139 | None:intergenic |
| GAATGGTGGGAGATTGAGAT+TGG | 0.500709 | 7_3:+63814920 | None:intergenic |
| ATGGTTCCGAAGGAGGGACT+GGG | 0.508412 | 7_3:-63814476 | Msa1116180:CDS |
| TTCTATAACTTCTTGAGGAA+AGG | 0.509722 | 7_3:+63810491 | None:intergenic |
| AACCATTCCAAGCTGCCCAT+TGG | 0.512603 | 7_3:+63813314 | None:intergenic |
| TTGACACTGATCTTTATCAC+TGG | 0.513007 | 7_3:-63814434 | Msa1116180:CDS |
| CAAAGGTTGTCTTCTCCAAT+GGG | 0.513498 | 7_3:-63813329 | Msa1116180:CDS |
| TAATGATACATACCTACTGC+TGG | 0.514363 | 7_3:+63811274 | None:intergenic |
| GACTGGTCACTGATTCGCAT+TGG | 0.525801 | 7_3:+63811394 | None:intergenic |
| GGAGAACCTGCTACTGCGGG+TGG | 0.532796 | 7_3:+63814972 | None:intergenic |
| TGTGGAGAAATTGAAATTGG+TGG | 0.533927 | 7_3:+63815003 | None:intergenic |
| TGATATACTGTGACTGTGAA+TGG | 0.540299 | 7_3:-63810731 | Msa1116180:three_prime_UTR |
| CATTTGATGGTTCCGAAGGA+GGG | 0.543043 | 7_3:-63814482 | Msa1116180:CDS |
| GTATACAAGTGTTGTACCAT+AGG | 0.544026 | 7_3:-63810592 | Msa1116180:three_prime_UTR |
| ATGATGCATACAAAATCCTA+TGG | 0.544121 | 7_3:+63810576 | None:intergenic |
| TTGTAGATGAATCTATGGCT+TGG | 0.546155 | 7_3:-63813444 | Msa1116180:intron |
| TTGTTATAGAGGTACGAGAC+GGG | 0.546757 | 7_3:-63814237 | Msa1116180:CDS |
| TGGTGGGAGATTGAGATTGG+AGG | 0.546785 | 7_3:+63814923 | None:intergenic |
| TTGGTTGGACTTCATTGGAG+AGG | 0.547157 | 7_3:-63810862 | Msa1116180:CDS |
| ACTATTGAATAGGTTCGAGC+TGG | 0.549915 | 7_3:-63812419 | Msa1116180:intron |
| CTGCGGGTGGGAATAAATTG+TGG | 0.555305 | 7_3:+63814985 | None:intergenic |
| AAGTGGAGAACCTGCTACTG+CGG | 0.555716 | 7_3:+63814968 | None:intergenic |
| TTGAATTGCTGGATTCTCCT+GGG | 0.556661 | 7_3:-63811423 | Msa1116180:CDS |
| TTCTAAAATCTGACAGGACA+CGG | 0.558450 | 7_3:+63810894 | None:intergenic |
| ACTTACCTGTGGATGACTTG+TGG | 0.559160 | 7_3:+63814201 | None:intergenic |
| ATTCGCATTGGAAGTATCCC+AGG | 0.560318 | 7_3:+63811406 | None:intergenic |
| GGTGGGAGATTGAGATTGGA+GGG | 0.562781 | 7_3:+63814924 | None:intergenic |
| CAACTGCAGATCGAAATGCT+TGG | 0.565332 | 7_3:-63813377 | Msa1116180:CDS |
| ACATTTGATGGTTCCGAAGG+AGG | 0.568118 | 7_3:-63814483 | Msa1116180:CDS |
| CACATACTAAATACCTGCAC+AGG | 0.571976 | 7_3:+63814396 | None:intergenic |
| TAGAAGCAACCTACCGGACG+AGG | 0.573378 | 7_3:+63813125 | None:intergenic |
| AGGGTTGGTGTGGCAGCGAG+AGG | 0.574193 | 7_3:+63814943 | None:intergenic |
| GTCAAGACCAGTCCAAAGAT+CGG | 0.574666 | 7_3:+63814452 | None:intergenic |
| ACATTCTTCTCTTTAACAGA+CGG | 0.577140 | 7_3:+63812354 | None:intergenic |
| TTGAGATTGGAGGGTTGGTG+TGG | 0.584151 | 7_3:+63814933 | None:intergenic |
| AGTGGAGAACCTGCTACTGC+GGG | 0.585138 | 7_3:+63814969 | None:intergenic |
| CTTACAAAGCTTCCAGCAGT+AGG | 0.586408 | 7_3:-63811286 | Msa1116180:intron |
| AACACATTTGATGGTTCCGA+AGG | 0.589714 | 7_3:-63814486 | Msa1116180:CDS |
| AAAAGCAGAAAAGGAACTCA+AGG | 0.594084 | 7_3:-63814281 | Msa1116180:CDS |
| GAATGTGCCCAGCAGCTCCA+AGG | 0.594202 | 7_3:-63812337 | Msa1116180:CDS |
| AATGTTAAACGGAGAGCCAA+AGG | 0.598690 | 7_3:-63813155 | Msa1116180:CDS |
| AGGGCACAATGAAGCTAGGC+CGG | 0.599760 | 7_3:-63813205 | Msa1116180:CDS |
| GAAGCTAGGCCGGTTAGCAA+AGG | 0.601587 | 7_3:-63813195 | Msa1116180:CDS |
| GTACAGGGCACAATGAAGCT+AGG | 0.604959 | 7_3:-63813209 | Msa1116180:intron |
| ACTGGGACCGATCTTTGGAC+TGG | 0.609653 | 7_3:-63814459 | Msa1116180:CDS |
| ATTGTCCACAAGTCATCCAC+AGG | 0.611577 | 7_3:-63814206 | Msa1116180:intron |
| TGATCTTTATCACTGGACAA+AGG | 0.621272 | 7_3:-63814427 | Msa1116180:CDS |
| ACTTCTTGAGGAAAGGCACA+AGG | 0.631248 | 7_3:+63810498 | None:intergenic |
| CTTGCCATATGTGATGACAT+TGG | 0.632886 | 7_3:-63811358 | Msa1116180:CDS |
| TGTGGATGACTTGTGGACAA+TGG | 0.641479 | 7_3:+63814208 | None:intergenic |
| TCACAGTATATCAGTATACA+GGG | 0.643439 | 7_3:+63810741 | None:intergenic |
| AACATCTGACTTCACCTAGG+AGG | 0.645330 | 7_3:+63810839 | None:intergenic |
| TGTGGCAGCGAGAGGTGAAG+TGG | 0.645729 | 7_3:+63814951 | None:intergenic |
| GCACTAGCAGCAAATAAACA+TGG | 0.653502 | 7_3:-63815091 | Msa1116180:exon |
| GAGAACCTGCTACTGCGGGT+GGG | 0.654778 | 7_3:+63814973 | None:intergenic |
| AATTGTTGGATACCCTAATG+TGG | 0.658376 | 7_3:-63812396 | Msa1116180:CDS |
| ATTGTTGGATACCCTAATGT+GGG | 0.670288 | 7_3:-63812395 | Msa1116180:CDS |
| ATTCGTGTAGACAGTGAATG+CGG | 0.692876 | 7_3:-63811128 | Msa1116180:CDS |
| GTAAACATCTGACTTCACCT+AGG | 0.697123 | 7_3:+63810836 | None:intergenic |
| TGGAGAGAGGTCTTATGATG+TGG | 0.703310 | 7_3:-63811338 | Msa1116180:CDS |
| TTATAGAGGTACGAGACGGG+CGG | 0.703873 | 7_3:-63814234 | Msa1116180:CDS |
| TATGTGATGACATTGGAGAG+AGG | 0.708423 | 7_3:-63811351 | Msa1116180:CDS |
| CAGGAGTTACAAGAGACCTG+AGG | 0.711953 | 7_3:-63812313 | Msa1116180:intron |
| GTTGTTATAGAGGTACGAGA+CGG | 0.721407 | 7_3:-63814238 | Msa1116180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTGATATAAATTTAA+GGG | + | chr7_3:63810600-63810619 | None:intergenic | 10.0% |
| !! | GTGAAAAAATAATAATATTA+CGG | + | chr7_3:63811139-63811158 | None:intergenic | 10.0% |
| !!! | AAAAATTTTAAACATTGAAT+TGG | + | chr7_3:63812143-63812162 | None:intergenic | 10.0% |
| !! | TTATAAATTCATTAACAATT+AGG | + | chr7_3:63813488-63813507 | None:intergenic | 10.0% |
| !! | AATAAATAAAACATTAAACA+TGG | + | chr7_3:63813898-63813917 | None:intergenic | 10.0% |
| !! | TATTATTTCCTTAATATAAA+AGG | - | chr7_3:63814260-63814279 | Msa1116180:CDS | 10.0% |
| !!! | TATTTTATTGATATATTTAC+TGG | - | chr7_3:63814657-63814676 | Msa1116180:intron | 10.0% |
| !! | TAAATACATGATATTAAATT+AGG | + | chr7_3:63814746-63814765 | None:intergenic | 10.0% |
| !!! | ATTATCATGTAATTATTTTT+TGG | - | chr7_3:63815091-63815110 | Msa1116180:exon | 10.0% |
| !!! | CGTTTTTTGATATAAATTTA+AGG | + | chr7_3:63810601-63810620 | None:intergenic | 15.0% |
| !! | ATTTCGTATTTACAAAATAA+TGG | - | chr7_3:63812990-63813009 | Msa1116180:intron | 15.0% |
| !!! | AATGATTTGTTAACAATTAA+AGG | + | chr7_3:63813221-63813240 | None:intergenic | 15.0% |
| !!! | AAGCTAGTATTTTTTATAAT+TGG | + | chr7_3:63813976-63813995 | None:intergenic | 15.0% |
| !!! | TTTTCAAAATTTAGTTTCTA+AGG | - | chr7_3:63814056-63814075 | Msa1116180:intron | 15.0% |
| !!! | AAAATCTTTTAGATTGAAGA+AGG | + | chr7_3:63810508-63810527 | None:intergenic | 20.0% |
| !!! | CTTCAATCTAAAAGATTTTA+CGG | - | chr7_3:63810509-63810528 | Msa1116180:three_prime_UTR | 20.0% |
| !!! | AACACATGAAATTCAATTTT+GGG | + | chr7_3:63810840-63810859 | None:intergenic | 20.0% |
| !! | CAAAAAACAGAACTTAAATT+AGG | + | chr7_3:63811067-63811086 | None:intergenic | 20.0% |
| !!! | CTAATTTAAGTTCTGTTTTT+TGG | - | chr7_3:63811065-63811084 | Msa1116180:intron | 20.0% |
| !! | AAATAATAATATTACGGTGA+CGG | + | chr7_3:63811133-63811152 | None:intergenic | 20.0% |
| !! | TAACATTGCTAATAATCTAA+CGG | + | chr7_3:63811178-63811197 | None:intergenic | 20.0% |
| !!! | ACACAATAAATGAACATTTT+TGG | + | chr7_3:63811558-63811577 | None:intergenic | 20.0% |
| !!! | TGTATTTGATTCAATTCTTT+TGG | - | chr7_3:63811814-63811833 | Msa1116180:intron | 20.0% |
| !! | TGAAAAAACATACGAAAAAA+TGG | + | chr7_3:63812019-63812038 | None:intergenic | 20.0% |
| !! | CAACTTAATGAAAAATTAAG+AGG | + | chr7_3:63812252-63812271 | None:intergenic | 20.0% |
| !!! | TGGTAATAAAAAGAGAATTT+TGG | - | chr7_3:63812304-63812323 | Msa1116180:intron | 20.0% |
| !! | ACATTCATAAAACAATGTTT+AGG | + | chr7_3:63812883-63812902 | None:intergenic | 20.0% |
| !! | ATTTCATGTTACTATTGAAT+AGG | - | chr7_3:63813299-63813318 | Msa1116180:intron | 20.0% |
| !! | TAAAATGAATAAATTACCTC+AGG | + | chr7_3:63813434-63813453 | None:intergenic | 20.0% |
| !!! | TATGTTTTGGAAGATATTTA+GGG | + | chr7_3:63813460-63813479 | None:intergenic | 20.0% |
| !!! | TTATGTTTTGGAAGATATTT+AGG | + | chr7_3:63813461-63813480 | None:intergenic | 20.0% |
| !! | AAAACGTCAAAAAATTTGAA+CGG | - | chr7_3:63813638-63813657 | Msa1116180:intron | 20.0% |
| !! | TATTTCCTTAATATAAAAGG+TGG | - | chr7_3:63814263-63814282 | Msa1116180:CDS | 20.0% |
| !! | ATTTCCTTAATATAAAAGGT+GGG | - | chr7_3:63814264-63814283 | Msa1116180:CDS | 20.0% |
| !! | AAATTAGGAAAAAAAATCAC+TGG | + | chr7_3:63814637-63814656 | None:intergenic | 20.0% |
| !! | AAAAGATTTTACGGAACAAA+AGG | - | chr7_3:63810518-63810537 | Msa1116180:three_prime_UTR | 25.0% |
| ! | AATTGTGGAGAAATTGAAAT+TGG | + | chr7_3:63810731-63810750 | None:intergenic | 25.0% |
| !! | GAACACATGAAATTCAATTT+TGG | + | chr7_3:63810841-63810860 | None:intergenic | 25.0% |
| ! | AACATTGGTACATAGAATAA+AGG | + | chr7_3:63811584-63811603 | None:intergenic | 25.0% |
| !!! | GCACAAAGTATTGTAAAATA+GGG | + | chr7_3:63811676-63811695 | None:intergenic | 25.0% |
| !!! | AGCACAAAGTATTGTAAAAT+AGG | + | chr7_3:63811677-63811696 | None:intergenic | 25.0% |
| ! | ATGACAAGCAATTATTGAAT+AGG | + | chr7_3:63811928-63811947 | None:intergenic | 25.0% |
| ! | TACTTATGAAACAGTTATTG+TGG | + | chr7_3:63812108-63812127 | None:intergenic | 25.0% |
| ! | TCACATAATGCTTCTTAATT+AGG | - | chr7_3:63812170-63812189 | Msa1116180:intron | 25.0% |
| ! | TCTTATCATAAAATTAGCAC+AGG | + | chr7_3:63812668-63812687 | None:intergenic | 25.0% |
| !! | CTTTTCTATGTCTAAGAATA+AGG | - | chr7_3:63812694-63812713 | Msa1116180:intron | 25.0% |
| ! | AAGAAATAACTTATTCCTGT+AGG | - | chr7_3:63812742-63812761 | Msa1116180:intron | 25.0% |
| ! | ATTCAAAACCTAATATTAGC+CGG | + | chr7_3:63813075-63813094 | None:intergenic | 25.0% |
| ! | CACATTAATACAATAACAGT+TGG | + | chr7_3:63813139-63813158 | None:intergenic | 25.0% |
| !!! | ATGTGCATTATTTTGTACTA+TGG | - | chr7_3:63813154-63813173 | Msa1116180:CDS | 25.0% |
| !! | CAATTAGGAATGTTATGTTT+TGG | + | chr7_3:63813473-63813492 | None:intergenic | 25.0% |
| !!! | GGTTATTTTGTTGTTTTAAG+TGG | - | chr7_3:63813781-63813800 | Msa1116180:intron | 25.0% |
| ! | TCGCAATCAATCAATTTATT+AGG | - | chr7_3:63813839-63813858 | Msa1116180:intron | 25.0% |
| !! | TGGTTTTTACAAATAAACCT+AGG | + | chr7_3:63813956-63813975 | None:intergenic | 25.0% |
| !! | TATCACAGTTGATTTATTTC+TGG | - | chr7_3:63814168-63814187 | Msa1116180:intron | 25.0% |
| !!! | ATAATTCTCTGTTTTAATGC+AGG | - | chr7_3:63814549-63814568 | Msa1116180:intron | 25.0% |
| ! | TTCTCTATGAATCTACAATT+GGG | + | chr7_3:63814769-63814788 | None:intergenic | 25.0% |
| ! | TCTTGTGTAATTCGTGTTTT+CGG | - | chr7_3:63810867-63810886 | Msa1116180:CDS | 30.0% |
| TTCTATTTGGTCTGAATTGT+GGG | + | chr7_3:63810930-63810949 | None:intergenic | 30.0% | |
| ! | ACATCATGGAGTCTTTTTAT+TGG | - | chr7_3:63810994-63811013 | Msa1116180:intron | 30.0% |
| CACTCAATGTTGTAGATAAT+TGG | - | chr7_3:63811215-63811234 | Msa1116180:intron | 30.0% | |
| TCATATTGCAAAAGCAGAAA+AGG | - | chr7_3:63811438-63811457 | Msa1116180:CDS | 30.0% | |
| GATGATAAAATGTACCAATC+AGG | + | chr7_3:63811875-63811894 | None:intergenic | 30.0% | |
| ! | ATTGGTACATTTTATCATCC+AGG | - | chr7_3:63811876-63811895 | Msa1116180:intron | 30.0% |
| ! | TTGGTACATTTTATCATCCA+GGG | - | chr7_3:63811877-63811896 | Msa1116180:intron | 30.0% |
| TTATAGATAGCTTATGAAGG+TGG | + | chr7_3:63811995-63812014 | None:intergenic | 30.0% | |
| TACATCCAAATACAGTAGTT+AGG | - | chr7_3:63812206-63812225 | Msa1116180:intron | 30.0% | |
| ATAGATTCATCTACAAAAGC+AGG | + | chr7_3:63812280-63812299 | None:intergenic | 30.0% | |
| ! | TGCTTTTGTAGATGAATCTA+TGG | - | chr7_3:63812279-63812298 | Msa1116180:intron | 30.0% |
| ! | TTTTACTAGGTATGGAACAA+AGG | - | chr7_3:63812382-63812401 | Msa1116180:CDS | 30.0% |
| CAGCTGATGTAAATGTTAAA+CGG | - | chr7_3:63812562-63812581 | Msa1116180:intron | 30.0% | |
| GGAAAAAAAAGAATCAGGAT+TGG | + | chr7_3:63812640-63812659 | None:intergenic | 30.0% | |
| AAAGCGGAAAAAAAAGAATC+AGG | + | chr7_3:63812645-63812664 | None:intergenic | 30.0% | |
| ATAAAATTAGCACAGGAAAG+CGG | + | chr7_3:63812661-63812680 | None:intergenic | 30.0% | |
| TAAGGAAACAGATCGTTTAT+TGG | - | chr7_3:63812712-63812731 | Msa1116180:intron | 30.0% | |
| !!! | CAACTCAATTTTGACTTAAG+AGG | - | chr7_3:63812781-63812800 | Msa1116180:intron | 30.0% |
| !! | CTTTTCCATCTCTAGAAATA+AGG | - | chr7_3:63812808-63812827 | Msa1116180:intron | 30.0% |
| !! | CATTTCCTTATTTCTAGAGA+TGG | + | chr7_3:63812816-63812835 | None:intergenic | 30.0% |
| TTCAAAACCTAATATTAGCC+GGG | + | chr7_3:63813074-63813093 | None:intergenic | 30.0% | |
| ACATTCTTCTCTTTAACAGA+CGG | + | chr7_3:63813377-63813396 | None:intergenic | 30.0% | |
| ! | GCGTGTTTAAAACAAAAAAC+AGG | + | chr7_3:63813575-63813594 | None:intergenic | 30.0% |
| ! | GGTATTCTTGATGACATTAT+GGG | + | chr7_3:63813597-63813616 | None:intergenic | 30.0% |
| !!! | GCTTAGGGATTTTATTTTTC+CGG | + | chr7_3:63813705-63813724 | None:intergenic | 30.0% |
| AACAACAAAATAACCAGCAT+TGG | + | chr7_3:63813776-63813795 | None:intergenic | 30.0% | |
| CAATTCCTAGAATGTTAACT+TGG | + | chr7_3:63813865-63813884 | None:intergenic | 30.0% | |
| !!! | ACTAGCTTTTCATTAGCTTT+TGG | - | chr7_3:63813988-63814007 | Msa1116180:intron | 30.0% |
| !!! | CTAGCTTTTCATTAGCTTTT+GGG | - | chr7_3:63813989-63814008 | Msa1116180:intron | 30.0% |
| !!! | GTTTTATTTGTTCTCAACAG+AGG | - | chr7_3:63814078-63814097 | Msa1116180:intron | 30.0% |
| ! | TCAACTGTGATAAACTTTTG+CGG | + | chr7_3:63814160-63814179 | None:intergenic | 30.0% |
| TAACCGAAATATGATTCCAA+GGG | + | chr7_3:63814490-63814509 | None:intergenic | 30.0% | |
| TTAACCGAAATATGATTCCA+AGG | + | chr7_3:63814491-63814510 | None:intergenic | 30.0% | |
| !! | TAAGTTTGAACTTTGAGATC+AGG | + | chr7_3:63814530-63814549 | None:intergenic | 30.0% |
| CTTCTCTATGAATCTACAAT+TGG | + | chr7_3:63814770-63814789 | None:intergenic | 30.0% | |
| !!! | TACCTTTTCTAAAATCTGAC+AGG | + | chr7_3:63814843-63814862 | None:intergenic | 30.0% |
| !! | TGTCAGATTTTAGAAAAGGT+AGG | - | chr7_3:63814842-63814861 | Msa1116180:intron | 30.0% |
| !! | GATTTTAGAAAAGGTAGGTT+TGG | - | chr7_3:63814847-63814866 | Msa1116180:intron | 30.0% |
| TCACAGTATATCAGTATACA+GGG | + | chr7_3:63814990-63815009 | None:intergenic | 30.0% | |
| AAACCTTCTATGAAGATTTG+AGG | - | chr7_3:63815027-63815046 | Msa1116180:CDS | 30.0% | |
| ATGATGCATACAAAATCCTA+TGG | + | chr7_3:63815155-63815174 | None:intergenic | 30.0% | |
| TTCTATAACTTCTTGAGGAA+AGG | + | chr7_3:63815240-63815259 | None:intergenic | 30.0% | |
| CATCATCATCATCTTGCTTA+TGG | - | chr7_3:63810684-63810703 | Msa1116180:three_prime_UTR | 35.0% | |
| ATTGGTGGAGATAGAGAATT+TGG | + | chr7_3:63810713-63810732 | None:intergenic | 35.0% | |
| TGTGGAGAAATTGAAATTGG+TGG | + | chr7_3:63810728-63810747 | None:intergenic | 35.0% | |
| !!! | TCAATTTTGGGTTACCTGAA+TGG | + | chr7_3:63810828-63810847 | None:intergenic | 35.0% |
| CACGAATTACACAAGAATGA+AGG | + | chr7_3:63810863-63810882 | None:intergenic | 35.0% | |
| CTTCTATTTGGTCTGAATTG+TGG | + | chr7_3:63810931-63810950 | None:intergenic | 35.0% | |
| CTTACATCCATTGAACATCA+TGG | - | chr7_3:63810980-63810999 | Msa1116180:intron | 35.0% | |
| AAAGACTCCATGATGTTCAA+TGG | + | chr7_3:63810990-63811009 | None:intergenic | 35.0% | |
| ATTGGCAACAACACATTTGA+TGG | - | chr7_3:63811233-63811252 | Msa1116180:intron | 35.0% | |
| TTGACACTGATCTTTATCAC+TGG | - | chr7_3:63811294-63811313 | Msa1116180:CDS | 35.0% | |
| TGATCTTTATCACTGGACAA+AGG | - | chr7_3:63811301-63811320 | Msa1116180:CDS | 35.0% | |
| TGTGCACTTTATGTGTGTAA+TGG | - | chr7_3:63811351-63811370 | Msa1116180:CDS | 35.0% | |
| AAAAGCAGAAAAGGAACTCA+AGG | - | chr7_3:63811447-63811466 | Msa1116180:CDS | 35.0% | |
| !! | CAAGGAACAACTTAAGTTGA+TGG | - | chr7_3:63811465-63811484 | Msa1116180:intron | 35.0% |
| ! | GTTGATGGATGTTGTTATAG+AGG | - | chr7_3:63811480-63811499 | Msa1116180:intron | 35.0% |
| !!! | TTTTGGTGTTAACTTACCTG+TGG | + | chr7_3:63811541-63811560 | None:intergenic | 35.0% |
| TGTACCAATGTTGTCTATAG+CGG | - | chr7_3:63811592-63811611 | Msa1116180:intron | 35.0% | |
| GTAAAATAGGGTCTATAGCA+GGG | + | chr7_3:63811664-63811683 | None:intergenic | 35.0% | |
| TGTAAAATAGGGTCTATAGC+AGG | + | chr7_3:63811665-63811684 | None:intergenic | 35.0% | |
| TTGTGCTAAATTGCGTATTG+TGG | - | chr7_3:63811690-63811709 | Msa1116180:intron | 35.0% | |
| ! | TGTTTGCTAAAATTCCGCTA+TGG | - | chr7_3:63811722-63811741 | Msa1116180:intron | 35.0% |
| TTTATCATCCAGGGAATGTT+TGG | - | chr7_3:63811886-63811905 | Msa1116180:intron | 35.0% | |
| TTATCATCCAGGGAATGTTT+GGG | - | chr7_3:63811887-63811906 | Msa1116180:intron | 35.0% | |
| GGCTTATAGATAGCTTATGA+AGG | + | chr7_3:63811998-63812017 | None:intergenic | 35.0% | |
| AAAGGCCTAACTACTGTATT+TGG | + | chr7_3:63812214-63812233 | None:intergenic | 35.0% | |
| TTGTAGATGAATCTATGGCT+TGG | - | chr7_3:63812284-63812303 | Msa1116180:intron | 35.0% | |
| !! | GCAGAGTATTTTACTAGGTA+TGG | - | chr7_3:63812374-63812393 | Msa1116180:CDS | 35.0% |
| GGATCAGATATGTTGAACAA+GGG | + | chr7_3:63812489-63812508 | None:intergenic | 35.0% | |
| AGGATCAGATATGTTGAACA+AGG | + | chr7_3:63812490-63812509 | None:intergenic | 35.0% | |
| AGAAACTAGTATATGCCTAC+AGG | + | chr7_3:63812760-63812779 | None:intergenic | 35.0% | |
| GTAAATACGAAATGCAAGAC+AGG | + | chr7_3:63812983-63813002 | None:intergenic | 35.0% | |
| TGCATATAATTGAGTTACCC+CGG | - | chr7_3:63813053-63813072 | Msa1116180:intron | 35.0% | |
| TCAAAACCTAATATTAGCCG+GGG | + | chr7_3:63813073-63813092 | None:intergenic | 35.0% | |
| TTGTACTATGGAAGTAGATG+TGG | - | chr7_3:63813166-63813185 | Msa1116180:CDS | 35.0% | |
| AATTGTTGGATACCCTAATG+TGG | - | chr7_3:63813332-63813351 | Msa1116180:CDS | 35.0% | |
| ATTGTTGGATACCCTAATGT+GGG | - | chr7_3:63813333-63813352 | Msa1116180:CDS | 35.0% | |
| ! | GAGATGATTTTCCCACATTA+GGG | + | chr7_3:63813347-63813366 | None:intergenic | 35.0% |
| ! | AGAGATGATTTTCCCACATT+AGG | + | chr7_3:63813348-63813367 | None:intergenic | 35.0% |
| ! | GGGTATTCTTGATGACATTA+TGG | + | chr7_3:63813598-63813617 | None:intergenic | 35.0% |
| !!! | ACGTTTTAGTTGTTGTGCAT+GGG | + | chr7_3:63813625-63813644 | None:intergenic | 35.0% |
| !! | AAGCTACATTTTTCGGCTTA+GGG | + | chr7_3:63813720-63813739 | None:intergenic | 35.0% |
| !! | AAAGCTACATTTTTCGGCTT+AGG | + | chr7_3:63813721-63813740 | None:intergenic | 35.0% |
| ! | AAGCCGAAAAATGTAGCTTT+TGG | - | chr7_3:63813721-63813740 | Msa1116180:intron | 35.0% |
| ! | AGCCGAAAAATGTAGCTTTT+GGG | - | chr7_3:63813722-63813741 | Msa1116180:intron | 35.0% |
| ! | GTTTTTCTTGCTTTCAACAG+AGG | - | chr7_3:63813746-63813765 | Msa1116180:intron | 35.0% |
| TTAGGCCAAGTTAACATTCT+AGG | - | chr7_3:63813857-63813876 | Msa1116180:intron | 35.0% | |
| GAGAAATGTATAATCGACCT+AGG | - | chr7_3:63813936-63813955 | Msa1116180:intron | 35.0% | |
| ! | TTATTTGGATAGGGAAGCAT+AGG | + | chr7_3:63814021-63814040 | None:intergenic | 35.0% |
| GCTTCCCTATCCAAATAAAA+TGG | - | chr7_3:63814023-63814042 | Msa1116180:intron | 35.0% | |
| TCCCTATCCAAATAAAATGG+TGG | - | chr7_3:63814026-63814045 | Msa1116180:intron | 35.0% | |
| !! | GCCACCATTTTATTTGGATA+GGG | + | chr7_3:63814030-63814049 | None:intergenic | 35.0% |
| !! | TGCCACCATTTTATTTGGAT+AGG | + | chr7_3:63814031-63814050 | None:intergenic | 35.0% |
| ! | GAACTTGCCACCATTTTATT+TGG | + | chr7_3:63814036-63814055 | None:intergenic | 35.0% |
| TCAACAGAGGAAGAAGTTAA+TGG | - | chr7_3:63814091-63814110 | Msa1116180:intron | 35.0% | |
| ! | CAACTGTGATAAACTTTTGC+GGG | + | chr7_3:63814159-63814178 | None:intergenic | 35.0% |
| ! | CGAACCCACCTTTTATATTA+AGG | + | chr7_3:63814271-63814290 | None:intergenic | 35.0% |
| ! | TATAAAAGGTGGGTTCGATT+TGG | - | chr7_3:63814274-63814293 | Msa1116180:CDS | 35.0% |
| ! | ATAAAAGGTGGGTTCGATTT+GGG | - | chr7_3:63814275-63814294 | Msa1116180:CDS | 35.0% |
| TAATGATACATACCTACTGC+TGG | + | chr7_3:63814457-63814476 | None:intergenic | 35.0% | |
| GCAGTAGGTATGTATCATTA+TGG | - | chr7_3:63814457-63814476 | Msa1116180:CDS | 35.0% | |
| CTTCCCTTGGAATCATATTT+CGG | - | chr7_3:63814484-63814503 | Msa1116180:CDS | 35.0% | |
| !! | TTCTAAAATCTGACAGGACA+CGG | + | chr7_3:63814837-63814856 | None:intergenic | 35.0% |
| !! | GTCCTGTCAGATTTTAGAAA+AGG | - | chr7_3:63814838-63814857 | Msa1116180:intron | 35.0% |
| ! | TTAGAAAAGGTAGGTTTGGT+TGG | - | chr7_3:63814851-63814870 | Msa1116180:intron | 35.0% |
| AAATTACGCGAGAGATATTC+AGG | - | chr7_3:63814945-63814964 | Msa1116180:CDS | 35.0% | |
| GTCACAGTATATCAGTATAC+AGG | + | chr7_3:63814991-63815010 | None:intergenic | 35.0% | |
| TGATATACTGTGACTGTGAA+TGG | - | chr7_3:63814997-63815016 | Msa1116180:CDS | 35.0% | |
| ! | GTATACAAGTGTTGTACCAT+AGG | - | chr7_3:63815136-63815155 | Msa1116180:five_prime_UTR | 35.0% |
| GCACTAGCAGCAAATAAACA+TGG | - | chr7_3:63810637-63810656 | Msa1116180:three_prime_UTR | 40.0% | |
| !!! | TTTTGGGTTACCTGAATGGT+GGG | + | chr7_3:63810824-63810843 | None:intergenic | 40.0% |
| !!! | ATTTTGGGTTACCTGAATGG+TGG | + | chr7_3:63810825-63810844 | None:intergenic | 40.0% |
| TTGGTCTGAATTGTGGGTTT+GGG | + | chr7_3:63810924-63810943 | None:intergenic | 40.0% | |
| TTTGGTCTGAATTGTGGGTT+TGG | + | chr7_3:63810925-63810944 | None:intergenic | 40.0% | |
| CTGACAGTGCATCTTCTATT+TGG | + | chr7_3:63810943-63810962 | None:intergenic | 40.0% | |
| ! | AACACATTTGATGGTTCCGA+AGG | - | chr7_3:63811242-63811261 | Msa1116180:intron | 40.0% |
| CACATACTAAATACCTGCAC+AGG | + | chr7_3:63811335-63811354 | None:intergenic | 40.0% | |
| !! | TTTGAGTGCTGATTACTCCT+TGG | - | chr7_3:63811394-63811413 | Msa1116180:CDS | 40.0% |
| ! | TGCTGATTACTCCTTGGTAT+TGG | - | chr7_3:63811400-63811419 | Msa1116180:CDS | 40.0% |
| !! | TCTGCTTTTGCAATATGACC+AGG | + | chr7_3:63811436-63811455 | None:intergenic | 40.0% |
| ! | GTTGTTATAGAGGTACGAGA+CGG | - | chr7_3:63811490-63811509 | Msa1116180:intron | 40.0% |
| ! | TTGTTATAGAGGTACGAGAC+GGG | - | chr7_3:63811491-63811510 | Msa1116180:intron | 40.0% |
| CAATCCGCTATAGACAACAT+TGG | + | chr7_3:63811599-63811618 | None:intergenic | 40.0% | |
| ACTACAACGCTATACCATAG+CGG | + | chr7_3:63811739-63811758 | None:intergenic | 40.0% | |
| CGAAACCATGAGCAATGATA+GGG | + | chr7_3:63811849-63811868 | None:intergenic | 40.0% | |
| ACGAAACCATGAGCAATGAT+AGG | + | chr7_3:63811850-63811869 | None:intergenic | 40.0% | |
| TCATGGTTTCGTTACCTGAT+TGG | - | chr7_3:63811858-63811877 | Msa1116180:intron | 40.0% | |
| TTGATTACCCAAACATTCCC+TGG | + | chr7_3:63811897-63811916 | None:intergenic | 40.0% | |
| ! | AGGTATCGTCGTAGTACAAA+AGG | + | chr7_3:63812232-63812251 | None:intergenic | 40.0% |
| AACTGCAGATCGAAATGCTT+GGG | - | chr7_3:63812352-63812371 | Msa1116180:CDS | 40.0% | |
| !! | CTTGGGCAGAGTATTTTACT+AGG | - | chr7_3:63812369-63812388 | Msa1116180:CDS | 40.0% |
| ACAAAGGTTGTCTTCTCCAA+TGG | - | chr7_3:63812398-63812417 | Msa1116180:CDS | 40.0% | |
| CAAAGGTTGTCTTCTCCAAT+GGG | - | chr7_3:63812399-63812418 | Msa1116180:CDS | 40.0% | |
| GGAGGAGAAAAGATCTTGTT+TGG | + | chr7_3:63812445-63812464 | None:intergenic | 40.0% | |
| ATCTTGAGAACATGTAGAGG+TGG | + | chr7_3:63812466-63812485 | None:intergenic | 40.0% | |
| TGATCCTATGCGTTATGTAC+AGG | - | chr7_3:63812503-63812522 | Msa1116180:intron | 40.0% | |
| GATCCTATGCGTTATGTACA+GGG | - | chr7_3:63812504-63812523 | Msa1116180:intron | 40.0% | |
| CTGCTAATTCCTTTGCTAAC+CGG | + | chr7_3:63812545-63812564 | None:intergenic | 40.0% | |
| AATGTTAAACGGAGAGCCAA+AGG | - | chr7_3:63812573-63812592 | Msa1116180:intron | 40.0% | |
| AATTGCTAGAAGCAACCTAC+CGG | + | chr7_3:63812612-63812631 | None:intergenic | 40.0% | |
| AAACAATGTTTAGGAGCTGC+AGG | + | chr7_3:63812874-63812893 | None:intergenic | 40.0% | |
| ACTATTGAATAGGTTCGAGC+TGG | - | chr7_3:63813309-63813328 | Msa1116180:intron | 40.0% | |
| !!! | GTTTTAGTTGTTGTGCATGG+GGG | + | chr7_3:63813623-63813642 | None:intergenic | 40.0% |
| !!! | CGTTTTAGTTGTTGTGCATG+GGG | + | chr7_3:63813624-63813643 | None:intergenic | 40.0% |
| !!! | GACGTTTTAGTTGTTGTGCA+TGG | + | chr7_3:63813626-63813645 | None:intergenic | 40.0% |
| ! | GAACGGACTTCAAATCCTAA+TGG | - | chr7_3:63813655-63813674 | Msa1116180:intron | 40.0% |
| ACCTGTCTCTTGATATTCAC+CGG | - | chr7_3:63813683-63813702 | Msa1116180:intron | 40.0% | |
| ! | GCCGAAAAATGTAGCTTTTG+GGG | - | chr7_3:63813723-63813742 | Msa1116180:intron | 40.0% |
| ! | CCCCCAAAAGCTACATTTTT+CGG | + | chr7_3:63813727-63813746 | None:intergenic | 40.0% |
| ! | CCGAAAAATGTAGCTTTTGG+GGG | - | chr7_3:63813724-63813743 | Msa1116180:intron | 40.0% |
| GCTCAAGCAAGAAACAATGA+TGG | - | chr7_3:63814203-63814222 | Msa1116180:intron | 40.0% | |
| TGGGAAAGATCTTGAATTGC+TGG | - | chr7_3:63814294-63814313 | Msa1116180:CDS | 40.0% | |
| TTGAATTGCTGGATTCTCCT+GGG | - | chr7_3:63814305-63814324 | Msa1116180:intron | 40.0% | |
| !! | CAAGTTTTATAGCTGCTGAC+TGG | + | chr7_3:63814354-63814373 | None:intergenic | 40.0% |
| CTTGCCATATGTGATGACAT+TGG | - | chr7_3:63814370-63814389 | Msa1116180:intron | 40.0% | |
| CTCTCCAATGTCATCACATA+TGG | + | chr7_3:63814377-63814396 | None:intergenic | 40.0% | |
| TATGTGATGACATTGGAGAG+AGG | - | chr7_3:63814377-63814396 | Msa1116180:intron | 40.0% | |
| ATTCGTGTAGACAGTGAATG+CGG | - | chr7_3:63814600-63814619 | Msa1116180:intron | 40.0% | |
| CTTGCGCTTCATTTGTTCAA+TGG | - | chr7_3:63814790-63814809 | Msa1116180:intron | 40.0% | |
| ! | TAGGTTTGGTTGGACTTCAT+TGG | - | chr7_3:63814861-63814880 | Msa1116180:intron | 40.0% |
| GTAAACATCTGACTTCACCT+AGG | + | chr7_3:63814895-63814914 | None:intergenic | 40.0% | |
| GAGCCTCAAATCTTCATAGA+AGG | + | chr7_3:63815033-63815052 | None:intergenic | 40.0% | |
| ! | GAATGGTGGGAGATTGAGAT+TGG | + | chr7_3:63810811-63810830 | None:intergenic | 45.0% |
| ATCTCAATCTCCCACCATTC+AGG | - | chr7_3:63810811-63810830 | Msa1116180:three_prime_UTR | 45.0% | |
| ! | ACATTTGATGGTTCCGAAGG+AGG | - | chr7_3:63811245-63811264 | Msa1116180:intron | 45.0% |
| ! | CATTTGATGGTTCCGAAGGA+GGG | - | chr7_3:63811246-63811265 | Msa1116180:intron | 45.0% |
| GTCAAGACCAGTCCAAAGAT+CGG | + | chr7_3:63811279-63811298 | None:intergenic | 45.0% | |
| ! | AAAGGTTTTACGACCTGTGC+AGG | - | chr7_3:63811319-63811338 | Msa1116180:CDS | 45.0% |
| ! | TACTCCTTGGTATTGGACAG+TGG | - | chr7_3:63811407-63811426 | Msa1116180:CDS | 45.0% |
| GAAACCACTGTCCAATACCA+AGG | + | chr7_3:63811414-63811433 | None:intergenic | 45.0% | |
| ! | TGTGGATGACTTGTGGACAA+TGG | + | chr7_3:63811523-63811542 | None:intergenic | 45.0% |
| ATTGTCCACAAGTCATCCAC+AGG | - | chr7_3:63811522-63811541 | Msa1116180:intron | 45.0% | |
| ACTTACCTGTGGATGACTTG+TGG | + | chr7_3:63811530-63811549 | None:intergenic | 45.0% | |
| !! | TAGCGGATTGCTGATAACAG+CGG | - | chr7_3:63811609-63811628 | Msa1116180:intron | 45.0% |
| TGCTTCCCTATCATTGCTCA+TGG | - | chr7_3:63811841-63811860 | Msa1116180:intron | 45.0% | |
| AGCTCTTTCAAACACTCCAG+CGG | - | chr7_3:63812068-63812087 | Msa1116180:intron | 45.0% | |
| CAACTGCAGATCGAAATGCT+TGG | - | chr7_3:63812351-63812370 | Msa1116180:CDS | 45.0% | |
| TTGAGAACATGTAGAGGTGG+AGG | + | chr7_3:63812463-63812482 | None:intergenic | 45.0% | |
| GGGATCTTGAGAACATGTAG+AGG | + | chr7_3:63812469-63812488 | None:intergenic | 45.0% | |
| GAGTTACCCCGGCTAATATT+AGG | - | chr7_3:63813064-63813083 | Msa1116180:intron | 45.0% | |
| TAGGTTCGAGCTGGAATTGT+TGG | - | chr7_3:63813318-63813337 | Msa1116180:CDS | 45.0% | |
| TTGTTTCCTGACGCTGATGT+CGG | - | chr7_3:63813522-63813541 | Msa1116180:intron | 45.0% | |
| CGGACTTCAAATCCTAATGG+AGG | - | chr7_3:63813658-63813677 | Msa1116180:intron | 45.0% | |
| TCCGGTGAATATCAAGAGAC+AGG | + | chr7_3:63813687-63813706 | None:intergenic | 45.0% | |
| CTTGAATTGCTGGATTCTCC+TGG | - | chr7_3:63814304-63814323 | Msa1116180:CDS | 45.0% | |
| !! | ATTCGCATTGGAAGTATCCC+AGG | + | chr7_3:63814325-63814344 | None:intergenic | 45.0% |
| ! | TGGAGAGAGGTCTTATGATG+TGG | - | chr7_3:63814390-63814409 | Msa1116180:intron | 45.0% |
| CTTACAAAGCTTCCAGCAGT+AGG | - | chr7_3:63814442-63814461 | Msa1116180:CDS | 45.0% | |
| TCATTATGGCATGCTTCCCT+TGG | - | chr7_3:63814471-63814490 | Msa1116180:CDS | 45.0% | |
| TTGGTTGGACTTCATTGGAG+AGG | - | chr7_3:63814866-63814885 | Msa1116180:intron | 45.0% | |
| AACATCTGACTTCACCTAGG+AGG | + | chr7_3:63814892-63814911 | None:intergenic | 45.0% | |
| ! | ACTTCTTGAGGAAAGGCACA+AGG | + | chr7_3:63815233-63815252 | None:intergenic | 45.0% |
| !!! | TTTAATGTTTTATTTATTTT+AGG | - | chr7_3:63813900-63813919 | Msa1116180:intron | 5.0% |
| !! | TATATCAATAAAATAAAATT+AGG | + | chr7_3:63814652-63814671 | None:intergenic | 5.0% |
| CTGCGGGTGGGAATAAATTG+TGG | + | chr7_3:63810746-63810765 | None:intergenic | 50.0% | |
| AAGTGGAGAACCTGCTACTG+CGG | + | chr7_3:63810763-63810782 | None:intergenic | 50.0% | |
| !! | TTGAGATTGGAGGGTTGGTG+TGG | + | chr7_3:63810798-63810817 | None:intergenic | 50.0% |
| GGAGATTGAGATTGGAGGGT+TGG | + | chr7_3:63810803-63810822 | None:intergenic | 50.0% | |
| GGTGGGAGATTGAGATTGGA+GGG | + | chr7_3:63810807-63810826 | None:intergenic | 50.0% | |
| TGGTGGGAGATTGAGATTGG+AGG | + | chr7_3:63810808-63810827 | None:intergenic | 50.0% | |
| ! | GGTATTGGACAGTGGTTTCC+TGG | - | chr7_3:63811415-63811434 | Msa1116180:CDS | 50.0% |
| ! | TTATAGAGGTACGAGACGGG+CGG | - | chr7_3:63811494-63811513 | Msa1116180:intron | 50.0% |
| !! | AGCGGATTGCTGATAACAGC+GGG | - | chr7_3:63811610-63811629 | Msa1116180:intron | 50.0% |
| GGAAAATGACGTAACACCGC+TGG | + | chr7_3:63812087-63812106 | None:intergenic | 50.0% | |
| AACCATTCCAAGCTGCCCAT+TGG | + | chr7_3:63812417-63812436 | None:intergenic | 50.0% | |
| AATGGGCAGCTTGGAATGGT+TGG | - | chr7_3:63812416-63812435 | Msa1116180:intron | 50.0% | |
| GTGCCCTGTACATAACGCAT+AGG | + | chr7_3:63812510-63812529 | None:intergenic | 50.0% | |
| GTACAGGGCACAATGAAGCT+AGG | - | chr7_3:63812519-63812538 | Msa1116180:intron | 50.0% | |
| CAAAGGACTACTTCCTCGTC+CGG | - | chr7_3:63812590-63812609 | Msa1116180:intron | 50.0% | |
| AGGAGCTGCAGGAAAGTTGT+AGG | + | chr7_3:63812863-63812882 | None:intergenic | 50.0% | |
| TCTCTTGTAACTCCTGGCCT+TGG | + | chr7_3:63813411-63813430 | None:intergenic | 50.0% | |
| CTCAGGTCTCTTGTAACTCC+TGG | + | chr7_3:63813417-63813436 | None:intergenic | 50.0% | |
| CAGGAGTTACAAGAGACCTG+AGG | - | chr7_3:63813415-63813434 | Msa1116180:CDS | 50.0% | |
| TAGTTGTTGTGCATGGGGGA+GGG | + | chr7_3:63813619-63813638 | None:intergenic | 50.0% | |
| TTAGTTGTTGTGCATGGGGG+AGG | + | chr7_3:63813620-63813639 | None:intergenic | 50.0% | |
| AGAGACAGGTTGCCTCCATT+AGG | + | chr7_3:63813673-63813692 | None:intergenic | 50.0% | |
| CAACAGAGGAAAGCCAATGC+TGG | - | chr7_3:63813760-63813779 | Msa1116180:intron | 50.0% | |
| !! | GACTGGTCACTGATTCGCAT+TGG | + | chr7_3:63814337-63814356 | None:intergenic | 50.0% |
| AGCGTCAGAGTCTTGCTTCT+AGG | + | chr7_3:63814917-63814936 | None:intergenic | 50.0% | |
| TTATTCCCACCCGCAGTAGC+AGG | - | chr7_3:63810750-63810769 | Msa1116180:three_prime_UTR | 55.0% | |
| AGTGGAGAACCTGCTACTGC+GGG | + | chr7_3:63810762-63810781 | None:intergenic | 55.0% | |
| ATGGTTCCGAAGGAGGGACT+GGG | - | chr7_3:63811252-63811271 | Msa1116180:intron | 55.0% | |
| ACTGGGACCGATCTTTGGAC+TGG | - | chr7_3:63811269-63811288 | Msa1116180:intron | 55.0% | |
| GTCTTCTCCAATGGGCAGCT+TGG | - | chr7_3:63812407-63812426 | Msa1116180:CDS | 55.0% | |
| CTCCAATGGGCAGCTTGGAA+TGG | - | chr7_3:63812412-63812431 | Msa1116180:intron | 55.0% | |
| AGGGCACAATGAAGCTAGGC+CGG | - | chr7_3:63812523-63812542 | Msa1116180:intron | 55.0% | |
| GAAGCTAGGCCGGTTAGCAA+AGG | - | chr7_3:63812533-63812552 | Msa1116180:intron | 55.0% | |
| CGGACGAGGAAGTAGTCCTT+TGG | + | chr7_3:63812592-63812611 | None:intergenic | 55.0% | |
| TAGAAGCAACCTACCGGACG+AGG | + | chr7_3:63812606-63812625 | None:intergenic | 55.0% | |
| !! | ACAGTACCGACATCAGCGTC+AGG | + | chr7_3:63813531-63813550 | None:intergenic | 55.0% |
| AGTTGTTGTGCATGGGGGAG+GGG | + | chr7_3:63813618-63813637 | None:intergenic | 55.0% | |
| CTTCATTGGAGAGGCCTCCT+AGG | - | chr7_3:63814875-63814894 | Msa1116180:intron | 55.0% | |
| GAGAACCTGCTACTGCGGGT+GGG | + | chr7_3:63810758-63810777 | None:intergenic | 60.0% | |
| TGTGGCAGCGAGAGGTGAAG+TGG | + | chr7_3:63810780-63810799 | None:intergenic | 60.0% | |
| GATGGTTCCGAAGGAGGGAC+TGG | - | chr7_3:63811251-63811270 | Msa1116180:intron | 60.0% | |
| ATCGGTCCCAGTCCCTCCTT+CGG | + | chr7_3:63811261-63811280 | None:intergenic | 60.0% | |
| GAGGGACTGGGACCGATCTT+TGG | - | chr7_3:63811264-63811283 | Msa1116180:intron | 60.0% | |
| GGACTACTTCCTCGTCCGGT+AGG | - | chr7_3:63812594-63812613 | Msa1116180:intron | 60.0% | |
| GAATGTGCCCAGCAGCTCCA+AGG | - | chr7_3:63813391-63813410 | Msa1116180:CDS | 60.0% | |
| GGAGAACCTGCTACTGCGGG+TGG | + | chr7_3:63810759-63810778 | None:intergenic | 65.0% | |
| !! | AGGGTTGGTGTGGCAGCGAG+AGG | + | chr7_3:63810788-63810807 | None:intergenic | 65.0% |
| !! | CTCCTGGCCTTGGAGCTGCT+GGG | + | chr7_3:63813401-63813420 | None:intergenic | 65.0% |
| !! | ACTCCTGGCCTTGGAGCTGC+TGG | + | chr7_3:63813402-63813421 | None:intergenic | 65.0% |
| TGCCCAGCAGCTCCAAGGCC+AGG | - | chr7_3:63813396-63813415 | Msa1116180:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 63810488 | 63815262 | 63810488 | ID=Msa1116180;Name=Msa1116180 |
| chr7_3 | mRNA | 63810488 | 63815262 | 63810488 | ID=Msa1116180-mRNA-1;Parent=Msa1116180;Name=Msa1116180-mRNA-1;_AED=0.36;_eAED=0.36;_QI=168|1|1|1|1|1|9|362|371 |
| chr7_3 | exon | 63810488 | 63810973 | 63810488 | ID=Msa1116180-mRNA-1:exon:15069;Parent=Msa1116180-mRNA-1 |
| chr7_3 | exon | 63811122 | 63811179 | 63811122 | ID=Msa1116180-mRNA-1:exon:15068;Parent=Msa1116180-mRNA-1 |
| chr7_3 | exon | 63811287 | 63811468 | 63811287 | ID=Msa1116180-mRNA-1:exon:15067;Parent=Msa1116180-mRNA-1 |
| chr7_3 | exon | 63812314 | 63812429 | 63812314 | ID=Msa1116180-mRNA-1:exon:15066;Parent=Msa1116180-mRNA-1 |
| chr7_3 | exon | 63813139 | 63813225 | 63813139 | ID=Msa1116180-mRNA-1:exon:15065;Parent=Msa1116180-mRNA-1 |
| chr7_3 | exon | 63813317 | 63813460 | 63813317 | ID=Msa1116180-mRNA-1:exon:15064;Parent=Msa1116180-mRNA-1 |
| chr7_3 | exon | 63814207 | 63814323 | 63814207 | ID=Msa1116180-mRNA-1:exon:15063;Parent=Msa1116180-mRNA-1 |
| chr7_3 | exon | 63814410 | 63814520 | 63814410 | ID=Msa1116180-mRNA-1:exon:15062;Parent=Msa1116180-mRNA-1 |
| chr7_3 | exon | 63814918 | 63815262 | 63814918 | ID=Msa1116180-mRNA-1:exon:15061;Parent=Msa1116180-mRNA-1 |
| chr7_3 | five_prime_UTR | 63815095 | 63815262 | 63815095 | ID=Msa1116180-mRNA-1:five_prime_utr;Parent=Msa1116180-mRNA-1 |
| chr7_3 | CDS | 63814918 | 63815094 | 63814918 | ID=Msa1116180-mRNA-1:cds;Parent=Msa1116180-mRNA-1 |
| chr7_3 | CDS | 63814410 | 63814520 | 63814410 | ID=Msa1116180-mRNA-1:cds;Parent=Msa1116180-mRNA-1 |
| chr7_3 | CDS | 63814207 | 63814323 | 63814207 | ID=Msa1116180-mRNA-1:cds;Parent=Msa1116180-mRNA-1 |
| chr7_3 | CDS | 63813317 | 63813460 | 63813317 | ID=Msa1116180-mRNA-1:cds;Parent=Msa1116180-mRNA-1 |
| chr7_3 | CDS | 63813139 | 63813225 | 63813139 | ID=Msa1116180-mRNA-1:cds;Parent=Msa1116180-mRNA-1 |
| chr7_3 | CDS | 63812314 | 63812429 | 63812314 | ID=Msa1116180-mRNA-1:cds;Parent=Msa1116180-mRNA-1 |
| chr7_3 | CDS | 63811287 | 63811468 | 63811287 | ID=Msa1116180-mRNA-1:cds;Parent=Msa1116180-mRNA-1 |
| chr7_3 | CDS | 63811122 | 63811179 | 63811122 | ID=Msa1116180-mRNA-1:cds;Parent=Msa1116180-mRNA-1 |
| chr7_3 | CDS | 63810850 | 63810973 | 63810850 | ID=Msa1116180-mRNA-1:cds;Parent=Msa1116180-mRNA-1 |
| chr7_3 | three_prime_UTR | 63810488 | 63810849 | 63810488 | ID=Msa1116180-mRNA-1:three_prime_utr;Parent=Msa1116180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
