AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0199740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199740 MtrunA17_Chr2g0294391 94.050 437 14 2 1 437 1 425 0.0 838
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 86 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTGAGCATCTCTTAT+TGG 0.255116 2_1:-19115400 Msa0199740:CDS
AATATTACCTTGCACTTGTA+TGG 0.266728 2_1:+19116916 None:intergenic
GCAGGCTTTCTTCAACTTGC+TGG 0.275625 2_1:-19115891 Msa0199740:intron
AGTCTCTCCAGAGAGGTAAT+TGG 0.280375 2_1:-19118040 Msa0199740:CDS
AGCATCTCTTATTGGCTCTA+AGG 0.283609 2_1:-19115392 Msa0199740:CDS
CTTCAGTACTCTTGGTGTTT+CGG 0.323610 2_1:+19117305 None:intergenic
ACATCTTATGCTGCCTTAGA+AGG 0.333220 2_1:-19117747 Msa0199740:CDS
GAAGAACTATGGCGTGCTTT+AGG 0.333345 2_1:-19116718 Msa0199740:CDS
AAGTTGAAGTTTCTAAGATT+TGG 0.338252 2_1:+19116480 None:intergenic
ATCTTAGAAACTTCAACTTA+TGG 0.342098 2_1:-19116476 Msa0199740:CDS
ATTGTTGAATCTCCAACATT+AGG 0.343139 2_1:+19116537 None:intergenic
AGTTTGGTTTACACTCTTGC+TGG 0.350609 2_1:-19117963 Msa0199740:CDS
TATGCTGCCTTAGAAGGCCT+TGG 0.350897 2_1:-19117741 Msa0199740:CDS
CGTCCGATGAGTGGAGATAT+TGG 0.364584 2_1:-19116331 Msa0199740:CDS
TCATAACCCAAGGCCTTCTA+AGG 0.373122 2_1:+19117734 None:intergenic
AATAGCCTTTGCTGCTCAAT+TGG 0.377573 2_1:-19116287 Msa0199740:CDS
TGCTAATGCAATCTCATTCC+AGG 0.384899 2_1:-19117358 Msa0199740:CDS
GGCATACATGTTCAGATTGT+TGG 0.392739 2_1:-19115477 Msa0199740:intron
ATAGATTATAGACATTTAAC+AGG 0.392814 2_1:+19115348 None:intergenic
ATGCTGCCTTAGAAGGCCTT+GGG 0.406090 2_1:-19117740 Msa0199740:CDS
TCTAAGGGAAGCTCTTGCTT+TGG 0.410450 2_1:-19115376 Msa0199740:CDS
GTAGACTGTTTGAAGAACTA+TGG 0.410606 2_1:-19116729 Msa0199740:CDS
TGAAGCAGCTCCACCATGTT+GGG 0.410865 2_1:+19115431 None:intergenic
TTGTTTGTTTCCAGAATACT+TGG 0.412856 2_1:-19115707 Msa0199740:intron
GTCCGATGAGTGGAGATATT+GGG 0.417237 2_1:-19116330 Msa0199740:CDS
GTTAAAACCTTCAGTACTCT+TGG 0.418097 2_1:+19117297 None:intergenic
AGGGAAGCTCTTGCTTTGGT+TGG 0.427363 2_1:-19115372 Msa0199740:CDS
CAGTCTACTCTGCCTATAGA+AGG 0.430342 2_1:+19116744 None:intergenic
TATTGGGAGAGGAGCAACTA+AGG 0.440476 2_1:-19116314 Msa0199740:CDS
GTGTCGATACATCCTTCTAT+AGG 0.446867 2_1:-19116756 Msa0199740:CDS
CAGGTTAGTTTACCTAATGT+TGG 0.448264 2_1:-19116549 Msa0199740:CDS
GTCTCTCCAGAGAGGTAATT+GGG 0.449708 2_1:-19118039 Msa0199740:CDS
GATGTATCGACACAAGGAAA+TGG 0.452814 2_1:+19116766 None:intergenic
TGGAATGAGATTGCATTAGC+AGG 0.453245 2_1:+19117360 None:intergenic
CTTGATTGAAACTTTGATGT+TGG 0.455698 2_1:-19115306 Msa0199740:three_prime_UTR
TTTGTGAAGTAGATTTCTCC+TGG 0.459138 2_1:+19117340 None:intergenic
GGCTTTCTTCAACTTGCTGG+TGG 0.463509 2_1:-19115888 Msa0199740:CDS
GTGCTTAATTCCAGCAAAAG+TGG 0.464416 2_1:-19118156 Msa0199740:intron
CCATCACACGCTTTAATTAG+CGG 0.467340 2_1:-19115652 Msa0199740:CDS
GATCTTCACTTTCGCAAAGC+CGG 0.473240 2_1:-19117691 Msa0199740:intron
TTAATTAGCGGCATAGCCTA+TGG 0.484285 2_1:-19115640 Msa0199740:CDS
AGAGCCAATAAGAGATGCTC+AGG 0.491628 2_1:+19115396 None:intergenic
ACTAATGCTCACACAATTGA+AGG 0.491760 2_1:-19115864 Msa0199740:CDS
TGTTGAAACAGAGATATTTG+TGG 0.497398 2_1:+19118263 None:intergenic
GCTTCACCCAATTACCTCTC+TGG 0.500095 2_1:+19118033 None:intergenic
GTCATAACGGAGCGCTGCTA+TGG 0.513932 2_1:-19117165 Msa0199740:CDS
CAGTCCGATGGACAGTCCTC+GGG 0.520332 2_1:+19117408 None:intergenic
TAGAAACTTCAACTTATGGC+AGG 0.529444 2_1:-19116472 Msa0199740:intron
ACAGTCCGATGGACAGTCCT+CGG 0.535368 2_1:+19117407 None:intergenic
GAAGAACCTCATCAACACTT+TGG 0.544428 2_1:-19118105 Msa0199740:CDS
TTTAGCCAATTGAGCAGCAA+AGG 0.545220 2_1:+19116282 None:intergenic
AAAGCAAAAGATAGACCTCC+TGG 0.545248 2_1:-19116262 Msa0199740:intron
ACGGAGCGCTGCTATGGCTG+TGG 0.547245 2_1:-19117159 Msa0199740:CDS
TTAGACGGCCGTCCGATGAG+TGG 0.552985 2_1:-19116340 Msa0199740:CDS
GCATCTCTTATTGGCTCTAA+GGG 0.555107 2_1:-19115391 Msa0199740:CDS
TTGAAGCAGCTCCACCATGT+TGG 0.555464 2_1:+19115430 None:intergenic
CTTTCGCGCGTAGCCACCAT+AGG 0.556649 2_1:+19115624 None:intergenic
AATTGGGTGAAGCTCATTTG+TGG 0.561203 2_1:-19118023 Msa0199740:CDS
TCCACCATGTTGGGATTGCA+TGG 0.562511 2_1:+19115440 None:intergenic
CCGCTAATTAAAGCGTGTGA+TGG 0.565743 2_1:+19115652 None:intergenic
CATGCAGGACGGAGTCATAA+CGG 0.567434 2_1:-19117178 Msa0199740:intron
TTGGTTTACACTCTTGCTGG+AGG 0.575304 2_1:-19117960 Msa0199740:intron
GTTGTGAGTGCTGTGAATGA+AGG 0.582088 2_1:-19117787 Msa0199740:CDS
ATGAGTGGAGATATTGGGAG+AGG 0.585956 2_1:-19116325 Msa0199740:CDS
CTATGGTGGCTACGCGCGAA+AGG 0.602405 2_1:-19115623 Msa0199740:intron
CGAAACACCAAGAGTACTGA+AGG 0.602463 2_1:-19117304 Msa0199740:intron
TGATCCCGAGGACTGTCCAT+CGG 0.604988 2_1:-19117412 Msa0199740:CDS
GAAGTGTGTTGTTCATCAGA+AGG 0.605834 2_1:-19118129 Msa0199740:CDS
CTTAACAGAATTTGATCCCG+AGG 0.610386 2_1:-19117424 Msa0199740:intron
GGAATGAGATTGCATTAGCA+GGG 0.613865 2_1:+19117361 None:intergenic
CTCCCAATATCTCCACTCAT+CGG 0.614980 2_1:+19116328 None:intergenic
CAAGGGCGTGAACAGTCCGA+TGG 0.615557 2_1:+19117396 None:intergenic
TAGAAATCCATACAAGTGCA+AGG 0.617877 2_1:-19116923 Msa0199740:intron
GAAGCTCCAAAGTGTTGATG+AGG 0.621149 2_1:+19118099 None:intergenic
GATGATGATGATGAAATGGA+AGG 0.624179 2_1:+19118077 None:intergenic
ATGTATAAACTAAAGTTAGA+CGG 0.636370 2_1:-19116355 Msa0199740:intron
AGATCCATGCAATCCCAACA+TGG 0.647702 2_1:-19115444 Msa0199740:CDS
CCTCTCTGGAGAGACTCAAG+TGG 0.651836 2_1:+19118047 None:intergenic
ATTAGCGGCATAGCCTATGG+TGG 0.654448 2_1:-19115637 Msa0199740:CDS
CAATATCTCCACTCATCGGA+CGG 0.667049 2_1:+19116332 None:intergenic
TAGAAGGATGTATCGACACA+AGG 0.672436 2_1:+19116760 None:intergenic
TTGACACTGATCATAACCCA+AGG 0.690753 2_1:+19117724 None:intergenic
CCACTTGAGTCTCTCCAGAG+AGG 0.698123 2_1:-19118047 Msa0199740:CDS
TCCATGCAATCCCAACATGG+TGG 0.701127 2_1:-19115441 Msa0199740:CDS
TGTGAATGAAGGAATTGAAG+TGG 0.703438 2_1:-19117776 Msa0199740:CDS
TCTGTTTCAACAAAACACAA+CGG 0.706458 2_1:-19118252 Msa0199740:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCTACATTTAAAACTTT+TGG - chr2_1:19115904-19115923 Msa0199740:intron 15.0%
!! TAAGAATTTATAATATCAGA+TGG + chr2_1:19116438-19116457 None:intergenic 15.0%
!! GATATTACACAAATAATTAA+CGG + chr2_1:19116466-19116485 None:intergenic 15.0%
!! TAAAACTTGTAATGTTGAAT+TGG - chr2_1:19116311-19116330 Msa0199740:CDS 20.0%
!!! ATCCTACTTATTTTATCATA+GGG + chr2_1:19116404-19116423 None:intergenic 20.0%
!!! TATCCTACTTATTTTATCAT+AGG + chr2_1:19116405-19116424 None:intergenic 20.0%
!! AATAAACATGGAATAGAATT+TGG + chr2_1:19117123-19117142 None:intergenic 20.0%
!! ATGTATAAACTAAAGTTAGA+CGG - chr2_1:19117163-19117182 Msa0199740:CDS 20.0%
!! ATGATAGATATAAATCCTAA+AGG + chr2_1:19117576-19117595 None:intergenic 20.0%
!! ATAGATTATAGACATTTAAC+AGG + chr2_1:19118173-19118192 None:intergenic 20.0%
! TGATATCAAAAATCTCAGTT+TGG - chr2_1:19115539-19115558 Msa0199740:intron 25.0%
! AATTCAAGAATTGGATTATG+TGG - chr2_1:19115666-19115685 Msa0199740:CDS 25.0%
!!! CTACATTTAAAACTTTTGGA+AGG - chr2_1:19115908-19115927 Msa0199740:intron 25.0%
! AAAGTTTAATCTATGCTTAC+TGG - chr2_1:19116042-19116061 Msa0199740:intron 25.0%
! TTTATAATATCAGATGGAAC+TGG + chr2_1:19116432-19116451 None:intergenic 25.0%
!!! TATACTTTTCATTTTGATCC+AGG - chr2_1:19116504-19116523 Msa0199740:CDS 25.0%
! TAAATATTAGAAGAGGTTGA+AGG + chr2_1:19116867-19116886 None:intergenic 25.0%
! TCAACCTCTTCTAATATTTA+AGG - chr2_1:19116867-19116886 Msa0199740:intron 25.0%
! CAACCTCTTCTAATATTTAA+GGG - chr2_1:19116868-19116887 Msa0199740:intron 25.0%
! AACCTCTTCTAATATTTAAG+GGG - chr2_1:19116869-19116888 Msa0199740:intron 25.0%
! TTCCATAAATACTTGTTTCA+AGG - chr2_1:19116906-19116925 Msa0199740:intron 25.0%
! ATTTACTATTGAAATGATCC+AGG - chr2_1:19116950-19116969 Msa0199740:CDS 25.0%
!!! AAGTTGAAGTTTCTAAGATT+TGG + chr2_1:19117041-19117060 None:intergenic 25.0%
! ATCTTAGAAACTTCAACTTA+TGG - chr2_1:19117042-19117061 Msa0199740:intron 25.0%
!!! TGGGTTTGTTAAAATAAACA+TGG + chr2_1:19117135-19117154 None:intergenic 25.0%
!! GTCTAACTTTAGTTTATACA+TGG + chr2_1:19117164-19117183 None:intergenic 25.0%
! ATTGAAGGATTGAAAAAAGA+AGG - chr2_1:19117669-19117688 Msa0199740:intron 25.0%
!! AATTTAGAACAGAAACAGAA+TGG + chr2_1:19117958-19117977 None:intergenic 25.0%
!!! TTTCTGTTCTAAATTTTCTG+TGG - chr2_1:19117963-19117982 Msa0199740:CDS 25.0%
TGTTGAAACAGAGATATTTG+TGG + chr2_1:19115258-19115277 None:intergenic 30.0%
TCTGTTTCAACAAAACACAA+CGG - chr2_1:19115266-19115285 Msa0199740:three_prime_UTR 30.0%
! TGATGATGATGATGATGAAA+TGG + chr2_1:19115448-19115467 None:intergenic 30.0%
AACCAAGCAAATTCAAGAAT+TGG - chr2_1:19115657-19115676 Msa0199740:CDS 30.0%
! ATCCAATTCTTGAATTTGCT+TGG + chr2_1:19115662-19115681 None:intergenic 30.0%
TTGAATAAGAACTGTCTTAC+CGG + chr2_1:19115849-19115868 None:intergenic 30.0%
! GCGATAAGATTTTTGATGTA+TGG + chr2_1:19115882-19115901 None:intergenic 30.0%
TTGAATTGGATTTAACATGC+AGG - chr2_1:19116325-19116344 Msa0199740:CDS 30.0%
! ATTTTATCATAGGGACAAAC+TGG + chr2_1:19116395-19116414 None:intergenic 30.0%
GTCCCTATGATAAAATAAGT+AGG - chr2_1:19116399-19116418 Msa0199740:intron 30.0%
AATATTACCTTGCACTTGTA+TGG + chr2_1:19116605-19116624 None:intergenic 30.0%
TATTAGTGTCCTGAAATACT+AGG - chr2_1:19116621-19116640 Msa0199740:intron 30.0%
CAGTTATATCCTAGTATTTC+AGG + chr2_1:19116633-19116652 None:intergenic 30.0%
AACCCCTTAAATATTAGAAG+AGG + chr2_1:19116874-19116893 None:intergenic 30.0%
AGCCTTGAAACAAGTATTTA+TGG + chr2_1:19116911-19116930 None:intergenic 30.0%
ATTGTTGAATCTCCAACATT+AGG + chr2_1:19116984-19117003 None:intergenic 30.0%
! GAGAACATTTTGTTCATAGA+AGG + chr2_1:19117008-19117027 None:intergenic 30.0%
AGTTTATACATGGCAAAGAT+GGG + chr2_1:19117154-19117173 None:intergenic 30.0%
TAGTTTATACATGGCAAAGA+TGG + chr2_1:19117155-19117174 None:intergenic 30.0%
TAAAATCTTATCCTGAGTTG+AGG + chr2_1:19117409-19117428 None:intergenic 30.0%
!! GGATAAGATTTTAACGAGAT+AGG - chr2_1:19117416-19117435 Msa0199740:CDS 30.0%
GACATGATATGAATCTATGA+TGG - chr2_1:19117503-19117522 Msa0199740:intron 30.0%
AATGTTTCATTCCCTTAACA+TGG - chr2_1:19117605-19117624 Msa0199740:intron 30.0%
TTGTTTGTTTCCAGAATACT+TGG - chr2_1:19117811-19117830 Msa0199740:CDS 30.0%
! TTTTCATGATCCAAGTATTC+TGG + chr2_1:19117824-19117843 None:intergenic 30.0%
CTTGATTGAAACTTTGATGT+TGG - chr2_1:19118212-19118231 Msa0199740:intron 30.0%
! GATGATGATGATGAAATGGA+AGG + chr2_1:19115444-19115463 None:intergenic 35.0%
TGTGAATGAAGGAATTGAAG+TGG - chr2_1:19115742-19115761 Msa0199740:intron 35.0%
GGGATCAAATTCTGTTAAGA+AGG + chr2_1:19116093-19116112 None:intergenic 35.0%
TTTGTGAAGTAGATTTCTCC+TGG + chr2_1:19116181-19116200 None:intergenic 35.0%
GTTAAAACCTTCAGTACTCT+TGG + chr2_1:19116224-19116243 None:intergenic 35.0%
ATTGGATTTAACATGCAGGA+CGG - chr2_1:19116329-19116348 Msa0199740:CDS 35.0%
!! TTTTCATTTTGATCCAGGAG+AGG - chr2_1:19116509-19116528 Msa0199740:CDS 35.0%
TAGAAATCCATACAAGTGCA+AGG - chr2_1:19116595-19116614 Msa0199740:intron 35.0%
GTAGACTGTTTGAAGAACTA+TGG - chr2_1:19116789-19116808 Msa0199740:intron 35.0%
CAACATTAGGTAAACTAACC+TGG + chr2_1:19116971-19116990 None:intergenic 35.0%
!! CAGGTTAGTTTACCTAATGT+TGG - chr2_1:19116969-19116988 Msa0199740:CDS 35.0%
TAGAAACTTCAACTTATGGC+AGG - chr2_1:19117046-19117065 Msa0199740:intron 35.0%
TTGAATTGTGAATACGAACC+AGG + chr2_1:19117277-19117296 None:intergenic 35.0%
TCTCTATCATGACCATCAAA+CGG + chr2_1:19117330-19117349 None:intergenic 35.0%
! TTTGATGGTCATGATAGAGA+CGG - chr2_1:19117330-19117349 Msa0199740:CDS 35.0%
AAGATCTTATCCTGTCATGT+TGG - chr2_1:19117371-19117390 Msa0199740:CDS 35.0%
!! AAGATTTTAACGAGATAGGC+AGG - chr2_1:19117420-19117439 Msa0199740:intron 35.0%
GTCAAGTTATCGTATCATGA+TGG - chr2_1:19117460-19117479 Msa0199740:intron 35.0%
ATGTCTCAATCCAGTGTTTA+AGG + chr2_1:19117488-19117507 None:intergenic 35.0%
ACTAATGCTCACACAATTGA+AGG - chr2_1:19117654-19117673 Msa0199740:intron 35.0%
ATCACATAATGTGACTCTAG+TGG + chr2_1:19118015-19118034 None:intergenic 35.0%
GTCACATTATGTGATGACAT+TGG - chr2_1:19118020-19118039 Msa0199740:CDS 35.0%
GTGCTTAATTCCAGCAAAAG+TGG - chr2_1:19115362-19115381 Msa0199740:CDS 40.0%
!! CACTTCTTATCCACTTTTGC+TGG + chr2_1:19115375-19115394 None:intergenic 40.0%
! GAAGTGTGTTGTTCATCAGA+AGG - chr2_1:19115389-19115408 Msa0199740:CDS 40.0%
GAAGAACCTCATCAACACTT+TGG - chr2_1:19115413-19115432 Msa0199740:CDS 40.0%
AATTGGGTGAAGCTCATTTG+TGG - chr2_1:19115495-19115514 Msa0199740:intron 40.0%
! CATTTGTGGTGCAAGTTTTG+AGG - chr2_1:19115509-19115528 Msa0199740:intron 40.0%
! AGTTTGGTTTACACTCTTGC+TGG - chr2_1:19115555-19115574 Msa0199740:intron 40.0%
ACATCTTATGCTGCCTTAGA+AGG - chr2_1:19115771-19115790 Msa0199740:intron 40.0%
TTGACACTGATCATAACCCA+AGG + chr2_1:19115797-19115816 None:intergenic 40.0%
CTTAACAGAATTTGATCCCG+AGG - chr2_1:19116094-19116113 Msa0199740:intron 40.0%
GGAATGAGATTGCATTAGCA+GGG + chr2_1:19116160-19116179 None:intergenic 40.0%
TGGAATGAGATTGCATTAGC+AGG + chr2_1:19116161-19116180 None:intergenic 40.0%
TGCTAATGCAATCTCATTCC+AGG - chr2_1:19116160-19116179 Msa0199740:intron 40.0%
!! CTTCAGTACTCTTGGTGTTT+CGG + chr2_1:19116216-19116235 None:intergenic 40.0%
CTTACATATGTTACCTCTCC+TGG + chr2_1:19116525-19116544 None:intergenic 40.0%
! GATGTATCGACACAAGGAAA+TGG + chr2_1:19116755-19116774 None:intergenic 40.0%
! TAGAAGGATGTATCGACACA+AGG + chr2_1:19116761-19116780 None:intergenic 40.0%
! GTGTCGATACATCCTTCTAT+AGG - chr2_1:19116762-19116781 Msa0199740:CDS 40.0%
AATAGCCTTTGCTGCTCAAT+TGG - chr2_1:19117231-19117250 Msa0199740:intron 40.0%
TTTAGCCAATTGAGCAGCAA+AGG + chr2_1:19117239-19117258 None:intergenic 40.0%
AAAGCAAAAGATAGACCTCC+TGG - chr2_1:19117256-19117275 Msa0199740:intron 40.0%
AATTGTGAATACGAACCAGG+AGG + chr2_1:19117274-19117293 None:intergenic 40.0%
CTCTATCATGACCATCAAAC+GGG + chr2_1:19117329-19117348 None:intergenic 40.0%
TGATAGAGACGGATAGGATA+TGG - chr2_1:19117341-19117360 Msa0199740:CDS 40.0%
GATAGAGACGGATAGGATAT+GGG - chr2_1:19117342-19117361 Msa0199740:CDS 40.0%
GAGTTAGAAACCAACATGAC+AGG + chr2_1:19117384-19117403 None:intergenic 40.0%
GCAGGATATGATATGTGACA+TGG - chr2_1:19117438-19117457 Msa0199740:intron 40.0%
TTTCATTCCCTTAACATGGC+AGG - chr2_1:19117609-19117628 Msa0199740:intron 40.0%
AAGAAAGCCTGCCATGTTAA+GGG + chr2_1:19117619-19117638 None:intergenic 40.0%
CCATCACACGCTTTAATTAG+CGG - chr2_1:19117866-19117885 Msa0199740:intron 40.0%
TTAATTAGCGGCATAGCCTA+TGG - chr2_1:19117878-19117897 Msa0199740:intron 40.0%
GGCATACATGTTCAGATTGT+TGG - chr2_1:19118041-19118060 Msa0199740:CDS 40.0%
TCATCCTGAGCATCTCTTAT+TGG - chr2_1:19118118-19118137 Msa0199740:CDS 40.0%
!! AGCATCTCTTATTGGCTCTA+AGG - chr2_1:19118126-19118145 Msa0199740:CDS 40.0%
!! GCATCTCTTATTGGCTCTAA+GGG - chr2_1:19118127-19118146 Msa0199740:CDS 40.0%
!! GAAGCTCCAAAGTGTTGATG+AGG + chr2_1:19115422-19115441 None:intergenic 45.0%
AGTCTCTCCAGAGAGGTAAT+TGG - chr2_1:19115478-19115497 Msa0199740:intron 45.0%
GTCTCTCCAGAGAGGTAATT+GGG - chr2_1:19115479-19115498 Msa0199740:intron 45.0%
TTGGTTTACACTCTTGCTGG+AGG - chr2_1:19115558-19115577 Msa0199740:intron 45.0%
! GTTGTGAGTGCTGTGAATGA+AGG - chr2_1:19115731-19115750 Msa0199740:intron 45.0%
TCATAACCCAAGGCCTTCTA+AGG + chr2_1:19115787-19115806 None:intergenic 45.0%
GATCTTCACTTTCGCAAAGC+CGG - chr2_1:19115827-19115846 Msa0199740:CDS 45.0%
! CAGGGCAAACATTTTCGCAA+GGG + chr2_1:19116142-19116161 None:intergenic 45.0%
!! CGAAACACCAAGAGTACTGA+AGG - chr2_1:19116214-19116233 Msa0199740:intron 45.0%
CAGTCTACTCTGCCTATAGA+AGG + chr2_1:19116777-19116796 None:intergenic 45.0%
GAAGAACTATGGCGTGCTTT+AGG - chr2_1:19116800-19116819 Msa0199740:intron 45.0%
TTGAAGCTAGTAGCCGTAAG+TGG - chr2_1:19116839-19116858 Msa0199740:intron 45.0%
ACTTCAACTTATGGCAGGTG+TGG - chr2_1:19117051-19117070 Msa0199740:intron 45.0%
CAATATCTCCACTCATCGGA+CGG + chr2_1:19117189-19117208 None:intergenic 45.0%
GTCCGATGAGTGGAGATATT+GGG - chr2_1:19117188-19117207 Msa0199740:intron 45.0%
CTCCCAATATCTCCACTCAT+CGG + chr2_1:19117193-19117212 None:intergenic 45.0%
ATGAGTGGAGATATTGGGAG+AGG - chr2_1:19117193-19117212 Msa0199740:intron 45.0%
TATTGGGAGAGGAGCAACTA+AGG - chr2_1:19117204-19117223 Msa0199740:intron 45.0%
TCTTCACAAGACCCGTTTGA+TGG - chr2_1:19117315-19117334 Msa0199740:CDS 45.0%
TGGTCATGATAGAGACGGAT+AGG - chr2_1:19117335-19117354 Msa0199740:CDS 45.0%
TTCTAACTCAGCCTCAACTC+AGG - chr2_1:19117395-19117414 Msa0199740:CDS 45.0%
CATGATGGCTCCTTAAACAC+TGG - chr2_1:19117475-19117494 Msa0199740:intron 45.0%
CAGGATGAGAGAGACATGAT+AGG + chr2_1:19117540-19117559 None:intergenic 45.0%
CTATCATGTCTCTCTCATCC+TGG - chr2_1:19117538-19117557 Msa0199740:intron 45.0%
AATCCTAAAGGCCCGATCAA+TGG + chr2_1:19117564-19117583 None:intergenic 45.0%
GAAGAAAGCCTGCCATGTTA+AGG + chr2_1:19117620-19117639 None:intergenic 45.0%
CCGCTAATTAAAGCGTGTGA+TGG + chr2_1:19117869-19117888 None:intergenic 45.0%
AGATCCATGCAATCCCAACA+TGG - chr2_1:19118074-19118093 Msa0199740:CDS 45.0%
AGAGCCAATAAGAGATGCTC+AGG + chr2_1:19118125-19118144 None:intergenic 45.0%
TCTAAGGGAAGCTCTTGCTT+TGG - chr2_1:19118142-19118161 Msa0199740:CDS 45.0%
GCTTCACCCAATTACCTCTC+TGG + chr2_1:19115488-19115507 None:intergenic 50.0%
TATGCTGCCTTAGAAGGCCT+TGG - chr2_1:19115777-19115796 Msa0199740:intron 50.0%
ATGCTGCCTTAGAAGGCCTT+GGG - chr2_1:19115778-19115797 Msa0199740:intron 50.0%
! GCAGGGCAAACATTTTCGCA+AGG + chr2_1:19116143-19116162 None:intergenic 50.0%
CATGCAGGACGGAGTCATAA+CGG - chr2_1:19116340-19116359 Msa0199740:CDS 50.0%
!! GAGGTTGAAGGCACCACTTA+CGG + chr2_1:19116855-19116874 None:intergenic 50.0%
CGTCCGATGAGTGGAGATAT+TGG - chr2_1:19117187-19117206 Msa0199740:intron 50.0%
CTCTCATCCTGGCCATTGAT+CGG - chr2_1:19117549-19117568 Msa0199740:intron 50.0%
TCTCATCCTGGCCATTGATC+GGG - chr2_1:19117550-19117569 Msa0199740:intron 50.0%
GCAGGCTTTCTTCAACTTGC+TGG - chr2_1:19117627-19117646 Msa0199740:intron 50.0%
!! GGCTTTCTTCAACTTGCTGG+TGG - chr2_1:19117630-19117649 Msa0199740:intron 50.0%
ATTAGCGGCATAGCCTATGG+TGG - chr2_1:19117881-19117900 Msa0199740:intron 50.0%
TCCATGCAATCCCAACATGG+TGG - chr2_1:19118077-19118096 Msa0199740:CDS 50.0%
TCCACCATGTTGGGATTGCA+TGG + chr2_1:19118081-19118100 None:intergenic 50.0%
TGAAGCAGCTCCACCATGTT+GGG + chr2_1:19118090-19118109 None:intergenic 50.0%
TTGAAGCAGCTCCACCATGT+TGG + chr2_1:19118091-19118110 None:intergenic 50.0%
AGGGAAGCTCTTGCTTTGGT+TGG - chr2_1:19118146-19118165 Msa0199740:intron 50.0%
! CCTCTCTGGAGAGACTCAAG+TGG + chr2_1:19115474-19115493 None:intergenic 55.0%
CCACTTGAGTCTCTCCAGAG+AGG - chr2_1:19115471-19115490 Msa0199740:intron 55.0%
TGATCCCGAGGACTGTCCAT+CGG - chr2_1:19116106-19116125 Msa0199740:intron 55.0%
ACAGTCCGATGGACAGTCCT+CGG + chr2_1:19116114-19116133 None:intergenic 55.0%
!! GTCATAACGGAGCGCTGCTA+TGG - chr2_1:19116353-19116372 Msa0199740:intron 55.0%
TAAAGGCCCGATCAATGGCC+AGG + chr2_1:19117559-19117578 None:intergenic 55.0%
TGGCCATTGATCGGGCCTTT+AGG - chr2_1:19117558-19117577 Msa0199740:intron 55.0%
CAGTCCGATGGACAGTCCTC+GGG + chr2_1:19116113-19116132 None:intergenic 60.0%
! CAAGGGCGTGAACAGTCCGA+TGG + chr2_1:19116125-19116144 None:intergenic 60.0%
TTAGACGGCCGTCCGATGAG+TGG - chr2_1:19117178-19117197 Msa0199740:intron 60.0%
CTTTCGCGCGTAGCCACCAT+AGG + chr2_1:19117897-19117916 None:intergenic 60.0%
CTATGGTGGCTACGCGCGAA+AGG - chr2_1:19117895-19117914 Msa0199740:intron 60.0%
!! ACGGAGCGCTGCTATGGCTG+TGG - chr2_1:19116359-19116378 Msa0199740:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 19115230 19118310 19115230 ID=Msa0199740;Name=Msa0199740
chr2_1 mRNA 19115230 19118310 19115230 ID=Msa0199740-mRNA-1;Parent=Msa0199740;Name=Msa0199740-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|1|0.91|1|1|1|12|123|437
chr2_1 exon 19115230 19115484 19115230 ID=Msa0199740-mRNA-1:exon:7997;Parent=Msa0199740-mRNA-1
chr2_1 exon 19115624 19115715 19115624 ID=Msa0199740-mRNA-1:exon:7996;Parent=Msa0199740-mRNA-1
chr2_1 exon 19115826 19115909 19115826 ID=Msa0199740-mRNA-1:exon:7995;Parent=Msa0199740-mRNA-1
chr2_1 exon 19116263 19116362 19116263 ID=Msa0199740-mRNA-1:exon:7994;Parent=Msa0199740-mRNA-1
chr2_1 exon 19116473 19116568 19116473 ID=Msa0199740-mRNA-1:exon:7993;Parent=Msa0199740-mRNA-1
chr2_1 exon 19116687 19116789 19116687 ID=Msa0199740-mRNA-1:exon:7992;Parent=Msa0199740-mRNA-1
chr2_1 exon 19116924 19117014 19116924 ID=Msa0199740-mRNA-1:exon:7991;Parent=Msa0199740-mRNA-1
chr2_1 exon 19117124 19117193 19117124 ID=Msa0199740-mRNA-1:exon:7990;Parent=Msa0199740-mRNA-1
chr2_1 exon 19117305 19117438 19117305 ID=Msa0199740-mRNA-1:exon:7989;Parent=Msa0199740-mRNA-1
chr2_1 exon 19117692 19117841 19117692 ID=Msa0199740-mRNA-1:exon:7988;Parent=Msa0199740-mRNA-1
chr2_1 exon 19117961 19118164 19117961 ID=Msa0199740-mRNA-1:exon:7987;Parent=Msa0199740-mRNA-1
chr2_1 exon 19118253 19118310 19118253 ID=Msa0199740-mRNA-1:exon:7986;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19118253 19118310 19118253 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19117961 19118164 19117961 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19117692 19117841 19117692 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19117305 19117438 19117305 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19117124 19117193 19117124 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19116924 19117014 19116924 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19116687 19116789 19116687 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19116473 19116568 19116473 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19116263 19116362 19116263 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19115826 19115909 19115826 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19115624 19115715 19115624 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 CDS 19115353 19115484 19115353 ID=Msa0199740-mRNA-1:cds;Parent=Msa0199740-mRNA-1
chr2_1 three_prime_UTR 19115230 19115352 19115230 ID=Msa0199740-mRNA-1:three_prime_utr;Parent=Msa0199740-mRNA-1
Gene Sequence

>Msa0199740

ATGGCTAGTCTGAGATTTTTCTGCGCCACAAATATCTCTGTTTCAACAAAACACAACGCAAAAGTGGATAAGAAGTGTGTTGTTCATCAGAAGGTGAAGAACCTCATCAACACTTTGGAGCTTCCTTCCATTTCATCATCATCATCATCAACTCCACTTGAGTCTCTCCAGAGAGGTAATTGGGTGAAGCTCATTTGTGGTGCAAGTTTTGAGGATGTTGTTGATATCAAAAATCTCAGTTTGGTTTACACTCTTGCTGGAGTTGACTGCATTGACTGTGCTGCTGATGCATCTGTTGTGAGTGCTGTGAATGAAGGAATTGAAGTGGCAAGAGACATCTTATGCTGCCTTAGAAGGCCTTGGGTTATGATCAGTGTCAATGATGATAAAGATCTTCACTTTCGCAAAGCCGAATTTGATCCCGAGGACTGTCCATCGGACTGTTCACGCCCTTGCGAAAATGTTTGCCCTGCTAATGCAATCTCATTCCAGGAGAAATCTACTTCACAAACTTCATGTAACACCGAAACACCAAGAGTACTGAAGGACGGAGTCATAACGGAGCGCTGCTATGGCTGTGGTCGCTGTCTTCCAGTTTGTCCCTATGATAAAATAAGAGAGGTAACATATGTAAGAGATGCTGTTACAACTTCTGATCTCATCAAGAGAAACGATGTTGATGCTATAGAAATCCATACAAGTGCAAGTCCATTTCCTTGTGTCGATACATCCTTCTATAGGCAGAGTAGACTGTTTGAAGAACTATGGCGTGCTTTAGGAGATTCAGTAGAAAATTTGAAGCTAGTAGCCGTTAGTTTACCTAATGTTGGAGATTCAACAATACCTTCTATGAACAAAATGTTCTCTATTATGAAACCAAATCTTAGAAACTTCAACTTATGGCAGTTAGACGGCCGTCCGATGAGTGGAGATATTGGGAGAGGAGCAACTAAGGAGTCAATAGCCTTTGCTGCTCAATTGGCTAAAGCAAAAGATAGACCTCCTGGCTTTCTTCAACTTGCTGGTGGAACTAATGCTCACACAATTGAAGGATTGAAAAAAGAAGGACTCTTTCAAACAACTAGTTTAAAATACTTGGATCATGAAAATTCAACAATCAGTACATCTAATCCATCACACGCTTTAATTAGCGGCATAGCCTATGGTGGCTACGCGCGAAAGATTGTTGGTAGAGTATTGAGATCCATGCAATCCCAACATGGTGGAGCTGCTTCAATTGAAGATCATCCTGAGCATCTCTTATTGGCTCTAAGGGAAGCTCTTGCTTTGGTTGGACCTGTTAAATGTCTATAA

Protein sequence

>Msa0199740

MASLRFFCATNISVSTKHNAKVDKKCVVHQKVKNLINTLELPSISSSSSSTPLESLQRGNWVKLICGASFEDVVDIKNLSLVYTLAGVDCIDCAADASVVSAVNEGIEVARDILCCLRRPWVMISVNDDKDLHFRKAEFDPEDCPSDCSRPCENVCPANAISFQEKSTSQTSCNTETPRVLKDGVITERCYGCGRCLPVCPYDKIREVTYVRDAVTTSDLIKRNDVDAIEIHTSASPFPCVDTSFYRQSRLFEELWRALGDSVENLKLVAVSLPNVGDSTIPSMNKMFSIMKPNLRNFNLWQLDGRPMSGDIGRGATKESIAFAAQLAKAKDRPPGFLQLAGGTNAHTIEGLKKEGLFQTTSLKYLDHENSTISTSNPSHALISGIAYGGYARKIVGRVLRSMQSQHGGAASIEDHPEHLLLALREALALVGPVKCL*