AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0688550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 87 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGAACTTTATGTATTT+TGG 0.087585 4_4:-54637231 Msa0688550:three_prime_UTR
CAAAATCTTCGTTCCTCTTC+TGG 0.189240 4_4:+54637579 None:intergenic
ATTGCTAGTTAGTTGTAAAA+AGG 0.242009 4_4:+54637503 None:intergenic
TGATCAGTTCACAGAAGTTT+TGG 0.257845 4_4:+54638311 None:intergenic
AGTTGATGTACTGAACATTT+TGG 0.258107 4_4:-54637334 Msa0688550:three_prime_UTR
ATGATTAAGGTTTGTTCGTT+AGG 0.350942 4_4:-54637054 Msa0688550:three_prime_UTR
TGCCTCCTCTGTCGAGATCT+TGG 0.371412 4_4:-54639352 Msa0688550:intron
TGTTGGTAGTCTGAACCTTT+TGG 0.371496 4_4:-54637267 Msa0688550:three_prime_UTR
ACGAAAGCAGCATATCACTA+TGG 0.398317 4_4:-54638394 Msa0688550:CDS
GAGGTTGGAGAGGAGTTAAT+AGG 0.412700 4_4:-54638187 Msa0688550:three_prime_UTR
GCATTTGGTTGCAACATACT+TGG 0.419781 4_4:-54637116 Msa0688550:three_prime_UTR
TTTGTCAACTATCTCTGAAA+AGG 0.431947 4_4:-54637448 Msa0688550:three_prime_UTR
CTGCTCTCCCTCCCCTCTCA+TGG 0.441584 4_4:-54639399 Msa0688550:CDS
ATGGCATGATTCGGTGGTTA+CGG 0.445969 4_4:-54637616 Msa0688550:three_prime_UTR
GAGGAGTTAATAGGAGAAGA+AGG 0.445991 4_4:-54638178 Msa0688550:three_prime_UTR
GACTGAACTATGGCATGATT+CGG 0.452119 4_4:-54637625 Msa0688550:three_prime_UTR
ATAGGAGAAGAAGGTGGCAG+AGG 0.454543 4_4:-54638169 Msa0688550:three_prime_UTR
GCAGTCTTCAACCAGCTTCA+AGG 0.457614 4_4:+54637415 None:intergenic
TTGAAGACTGCGACAACATA+TGG 0.463057 4_4:-54637403 Msa0688550:three_prime_UTR
TTCAACCAGCTTCAAGGATG+TGG 0.465702 4_4:+54637421 None:intergenic
TGGGAGAGAGCAACGGAGGT+TGG 0.478823 4_4:-54638202 Msa0688550:three_prime_UTR
TTTGTGAGTTCTAAGGTAGA+TGG 0.487420 4_4:-54638588 Msa0688550:CDS
TGATTCGGTGGTTACGGAGG+TGG 0.493479 4_4:-54637610 Msa0688550:three_prime_UTR
TTATAGTAGATGCTTGATAA+TGG 0.494407 4_4:-54637476 Msa0688550:three_prime_UTR
TAGGAGAAGAAGGTGGCAGA+GGG 0.494590 4_4:-54638168 Msa0688550:three_prime_UTR
CTCCCACCTCACCACTATCA+TGG 0.495212 4_4:+54638219 None:intergenic
GAGAAGAAGGTGGCAGAGGG+AGG 0.498422 4_4:-54638165 Msa0688550:intron
AGTGTGCTGCATATGGCATT+TGG 0.502436 4_4:-54637131 Msa0688550:three_prime_UTR
ATACCATTCCCTACACCAAA+AGG 0.504862 4_4:+54637252 None:intergenic
GAGATGAAAACGATAACAAT+GGG 0.508666 4_4:+54639428 None:intergenic
CAATGACGGTGTCTGAGGAC+GGG 0.511301 4_4:-54638245 Msa0688550:three_prime_UTR
GAAAGGAAGATGCCATGAGA+GGG 0.517135 4_4:+54639387 None:intergenic
CGAGGTGGTGGTATGATTTG+AGG 0.518770 4_4:-54638277 Msa0688550:three_prime_UTR
AGAAAGGAAGATGCCATGAG+AGG 0.523382 4_4:+54639386 None:intergenic
ATAGTTCAGTCTAAACCTCC+TGG 0.528493 4_4:+54637637 None:intergenic
AGGCAAGGTAGAGCAGAGAA+AGG 0.529328 4_4:+54639370 None:intergenic
ATGAGCAAGTGTGCTGCATA+TGG 0.530569 4_4:-54637138 Msa0688550:three_prime_UTR
AGGAGGTTTAGACTGAACTA+TGG 0.538594 4_4:-54637635 Msa0688550:three_prime_UTR
GGCTTTGACAAGGTCAGCGG+TGG 0.545196 4_4:-54637550 Msa0688550:three_prime_UTR
GAGAAATAGAAAATGAAAGA+TGG 0.546411 4_4:-54637661 Msa0688550:three_prime_UTR
GAAGATGCCATGAGAGGGGA+GGG 0.548739 4_4:+54639392 None:intergenic
GCAATGACGGTGTCTGAGGA+CGG 0.548919 4_4:-54638246 Msa0688550:three_prime_UTR
ATGATTTGAGAGCGAGGTGG+TGG 0.550445 4_4:-54638289 Msa0688550:three_prime_UTR
AGGACGGGCAGCCATGATAG+TGG 0.551298 4_4:-54638230 Msa0688550:three_prime_UTR
GAGAACCACATCCTTGAAGC+TGG 0.555008 4_4:-54637426 Msa0688550:three_prime_UTR
TAGAAAATGAAAGATGGTCC+AGG 0.561434 4_4:-54637655 Msa0688550:three_prime_UTR
GAGAGCAACGGAGGTTGGAG+AGG 0.562647 4_4:-54638197 Msa0688550:three_prime_UTR
TGAGATGAAAACGATAACAA+TGG 0.565809 4_4:+54639427 None:intergenic
CAGCCATGATAGTGGTGAGG+TGG 0.566700 4_4:-54638222 Msa0688550:three_prime_UTR
CGAAAGCAGCATATCACTAT+GGG 0.571952 4_4:-54638393 Msa0688550:CDS
GGTGGTTACGGAGGTGGTGA+CGG 0.577502 4_4:-54637604 Msa0688550:three_prime_UTR
GGAAGATGCCATGAGAGGGG+AGG 0.579223 4_4:+54639391 None:intergenic
GGTGGTGACGGTGCCAGAAG+AGG 0.583848 4_4:-54637592 Msa0688550:three_prime_UTR
TGCGACTCACTAAGAAAAGG+TGG 0.584679 4_4:-54638356 Msa0688550:CDS
AGATCTCGACAGAGGAGGCA+AGG 0.585218 4_4:+54639355 None:intergenic
TGACAAGGTCAGCGGTGGAG+TGG 0.588046 4_4:-54637545 Msa0688550:three_prime_UTR
GGTATGATTTGAGGTGAGGA+TGG 0.589014 4_4:-54638268 Msa0688550:three_prime_UTR
AGGCGTAATCAGAGTCATGT+TGG 0.590722 4_4:-54637284 Msa0688550:three_prime_UTR
AGTTGCGACTCACTAAGAAA+AGG 0.593642 4_4:-54638359 Msa0688550:CDS
CTTAAAGTGAACATACGTGC+TGG 0.595313 4_4:-54638429 Msa0688550:intron
GGTGAGGTGGGAGAGAGCAA+CGG 0.601847 4_4:-54638209 Msa0688550:three_prime_UTR
ACTAAAAGATGCTAAGCGTG+TGG 0.603624 4_4:+54637378 None:intergenic
AGCCATGATAGTGGTGAGGT+GGG 0.604715 4_4:-54638221 Msa0688550:three_prime_UTR
TTTGATTGGTGGCTTTGACA+AGG 0.607573 4_4:-54637560 Msa0688550:three_prime_UTR
TTAAAGTGAACATACGTGCT+GGG 0.612799 4_4:-54638428 Msa0688550:intron
TGGTGGTATGATTTGAGGTG+AGG 0.620316 4_4:-54638272 Msa0688550:three_prime_UTR
AAGGTGGGAATAAACCATGA+TGG 0.621476 4_4:-54638340 Msa0688550:exon
CTAAAAGATGCTAAGCGTGT+GGG 0.623101 4_4:+54637379 None:intergenic
GGTGGCTTTGACAAGGTCAG+CGG 0.623212 4_4:-54637553 Msa0688550:three_prime_UTR
TGAGAGGGGAGGGAGAGCAG+AGG 0.628773 4_4:+54639402 None:intergenic
TGAACTATGGCATGATTCGG+TGG 0.628811 4_4:-54637622 Msa0688550:three_prime_UTR
GCATGATTCGGTGGTTACGG+AGG 0.632234 4_4:-54637613 Msa0688550:three_prime_UTR
TGAGGTGAGGATGGCAATGA+CGG 0.637651 4_4:-54638259 Msa0688550:three_prime_UTR
GACCAAGATCTCGACAGAGG+AGG 0.638280 4_4:+54639350 None:intergenic
GATGGCAATGACGGTGTCTG+AGG 0.638923 4_4:-54638250 Msa0688550:three_prime_UTR
AGCACACTTGCTCATAAACA+AGG 0.646044 4_4:+54637146 None:intergenic
GAGTTAATAGGAGAAGAAGG+TGG 0.646429 4_4:-54638175 Msa0688550:three_prime_UTR
GCGACTCACTAAGAAAAGGT+GGG 0.647264 4_4:-54638355 Msa0688550:CDS
AAAGGAAGATGCCATGAGAG+GGG 0.654025 4_4:+54639388 None:intergenic
AGTAATGTTGTAACACCATG+AGG 0.668059 4_4:+54637170 None:intergenic
CTGATCATGATTTGAGAGCG+AGG 0.671210 4_4:-54638295 Msa0688550:three_prime_UTR
GAGGTGGGAGAGAGCAACGG+AGG 0.689396 4_4:-54638206 Msa0688550:three_prime_UTR
GGGCAGCCATGATAGTGGTG+AGG 0.692492 4_4:-54638225 Msa0688550:three_prime_UTR
AAAATGAAAGATGGTCCAGG+AGG 0.692780 4_4:-54637652 Msa0688550:three_prime_UTR
ATTGACCAAGATCTCGACAG+AGG 0.716405 4_4:+54639347 None:intergenic
ATCATGATTTGAGAGCGAGG+TGG 0.795850 4_4:-54638292 Msa0688550:three_prime_UTR
AGATTGAATTGTGAACAACA+TGG 0.838604 4_4:-54638561 Msa0688550:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATGAAAAAAATAGTATTT+AGG + chr4_4:54637462-54637481 None:intergenic 15.0%
!!! TTAGTTTCTTTAATTTCAAT+TGG - chr4_4:54637523-54637542 Msa0688550:three_prime_UTR 15.0%
!!! TAGTTTCTTTAATTTCAATT+GGG - chr4_4:54637524-54637543 Msa0688550:three_prime_UTR 15.0%
!! AAAAAAAAGATTATAAGGAA+AGG + chr4_4:54638347-54638366 None:intergenic 15.0%
!! TATATATTCAAGATTGTAAA+TGG - chr4_4:54638564-54638583 Msa0688550:CDS 15.0%
!! ATATATTCAAGATTGTAAAT+GGG - chr4_4:54638565-54638584 Msa0688550:CDS 15.0%
!!! TTAGTTTGAGTTTTATATTT+TGG - chr4_4:54639060-54639079 Msa0688550:intron 15.0%
!!! ATTATGAACTTTATGTATTT+TGG - chr4_4:54639189-54639208 Msa0688550:intron 15.0%
!!! ATCATAGATCATTTTTTAAA+AGG + chr4_4:54639351-54639370 None:intergenic 15.0%
!! TAAAAAATGATCTATGATTA+AGG - chr4_4:54639353-54639372 Msa0688550:CDS 15.0%
!! AAAAAAATAGTATTTAGGAG+AGG + chr4_4:54637457-54637476 None:intergenic 20.0%
!! AATACACAAAAACAAATCAA+GGG + chr4_4:54637608-54637627 None:intergenic 20.0%
!! AAAAAAACATAACTTTAGAC+CGG + chr4_4:54637631-54637650 None:intergenic 20.0%
!! AAGTTACAATTTGACAATAA+AGG + chr4_4:54637710-54637729 None:intergenic 20.0%
!! AAGAAATGAAAAAGAAAATG+AGG + chr4_4:54638302-54638321 None:intergenic 20.0%
!! ATATATTTACAAGTGTTTGT+TGG - chr4_4:54638423-54638442 Msa0688550:CDS 20.0%
!! AGAAAAATAAATCACAAAGA+TGG + chr4_4:54638540-54638559 None:intergenic 20.0%
!!! TTGGTTTCAATCAATTTTTT+TGG - chr4_4:54639323-54639342 Msa0688550:intron 20.0%
! AATAAGAGAAAAGAGAAAAG+AGG + chr4_4:54637102-54637121 None:intergenic 25.0%
! ACATGAAGATTGAATGAATT+TGG + chr4_4:54637129-54637148 None:intergenic 25.0%
! AAATTCATTCAATCTTCATG+TGG - chr4_4:54637128-54637147 Msa0688550:three_prime_UTR 25.0%
!!! TTTAACGAATGTCATTTTGT+GGG + chr4_4:54637384-54637403 None:intergenic 25.0%
!!! TTTTAACGAATGTCATTTTG+TGG + chr4_4:54637385-54637404 None:intergenic 25.0%
! GAATACACAAAAACAAATCA+AGG + chr4_4:54637609-54637628 None:intergenic 25.0%
!!! TGATTTGTTTTTGTGTATTC+CGG - chr4_4:54637609-54637628 Msa0688550:three_prime_UTR 25.0%
!!! GGTCTAAAGTTATGTTTTTT+TGG - chr4_4:54637630-54637649 Msa0688550:three_prime_UTR 25.0%
! AGTAACATTGACACAAAATA+GGG + chr4_4:54637780-54637799 None:intergenic 25.0%
! AAGTAACATTGACACAAAAT+AGG + chr4_4:54637781-54637800 None:intergenic 25.0%
!!! GAGTTGATTTTATGCTAATT+TGG - chr4_4:54637922-54637941 Msa0688550:intron 25.0%
! GGAGGAAAAAAAAGATTATA+AGG + chr4_4:54638352-54638371 None:intergenic 25.0%
! GAGAAATAGAAAATGAAAGA+TGG - chr4_4:54638759-54638778 Msa0688550:intron 25.0%
! ATTGCTAGTTAGTTGTAAAA+AGG + chr4_4:54638920-54638939 None:intergenic 25.0%
! TTATAGTAGATGCTTGATAA+TGG - chr4_4:54638944-54638963 Msa0688550:intron 25.0%
GAGATGAAAACGATAACAAT+GGG + chr4_4:54636995-54637014 None:intergenic 30.0%
TGAGATGAAAACGATAACAA+TGG + chr4_4:54636996-54637015 None:intergenic 30.0%
! ATGTTTAAGGTTGAAGTTGT+CGG + chr4_4:54637163-54637182 None:intergenic 30.0%
! GATTTTTATTCTCAGCACAT+AGG - chr4_4:54637500-54637519 Msa0688550:three_prime_UTR 30.0%
TTTCACTTAGATTTGATCTG+TGG - chr4_4:54637656-54637675 Msa0688550:three_prime_UTR 30.0%
! TCGAAATTTGTGTTTTCAAC+AGG - chr4_4:54637805-54637824 Msa0688550:intron 30.0%
AGATTGAATTGTGAACAACA+TGG - chr4_4:54637859-54637878 Msa0688550:intron 30.0%
! ATGCAATTGATTGCTCTAAA+TGG + chr4_4:54638474-54638493 None:intergenic 30.0%
AATTAGAGAATGATACCTAC+TGG + chr4_4:54638629-54638648 None:intergenic 30.0%
GGTATCATTCTCTAATTGTT+TGG - chr4_4:54638632-54638651 Msa0688550:intron 30.0%
ATAGATAGTATTCTTCTCCA+AGG - chr4_4:54638731-54638750 Msa0688550:intron 30.0%
! TTTCTATTTCTCTACTACCT+TGG + chr4_4:54638751-54638770 None:intergenic 30.0%
! TTTGTCAACTATCTCTGAAA+AGG - chr4_4:54638972-54638991 Msa0688550:intron 30.0%
!! AGTTGATGTACTGAACATTT+TGG - chr4_4:54639086-54639105 Msa0688550:intron 30.0%
! ATGATTAAGGTTTGTTCGTT+AGG - chr4_4:54639366-54639385 Msa0688550:CDS 30.0%
!!! TCGCTTCAATCGATGTTTTT+TGG - chr4_4:54637311-54637330 Msa0688550:three_prime_UTR 35.0%
ATCATCTTCCTCATGGAAAT+CGG + chr4_4:54637339-54637358 None:intergenic 35.0%
TTTCCATGAGGAAGATGATT+CGG - chr4_4:54637340-54637359 Msa0688550:three_prime_UTR 35.0%
AGTATTTAGGAGAGGAAGAA+GGG + chr4_4:54637449-54637468 None:intergenic 35.0%
TAGTATTTAGGAGAGGAAGA+AGG + chr4_4:54637450-54637469 None:intergenic 35.0%
!! AGGTGTTTTTGTGAGTTCTA+AGG - chr4_4:54637825-54637844 Msa0688550:intron 35.0%
!! TTTGTGAGTTCTAAGGTAGA+TGG - chr4_4:54637832-54637851 Msa0688550:intron 35.0%
!!! GGTGAGTTTTGTTTAATCGT+TGG - chr4_4:54637880-54637899 Msa0688550:intron 35.0%
CAAATGAGCATGGAATCAAA+CGG + chr4_4:54637963-54637982 None:intergenic 35.0%
AGCACAAAATCAAATGAGCA+TGG + chr4_4:54637973-54637992 None:intergenic 35.0%
TTAAAGTGAACATACGTGCT+GGG - chr4_4:54637992-54638011 Msa0688550:intron 35.0%
! TGATCAGTTCACAGAAGTTT+TGG + chr4_4:54638112-54638131 None:intergenic 35.0%
CCATTCAATAGTGAAGTGAA+GGG + chr4_4:54638373-54638392 None:intergenic 35.0%
GGAGAAGAATACTATCTATG+AGG + chr4_4:54638730-54638749 None:intergenic 35.0%
TAGAAAATGAAAGATGGTCC+AGG - chr4_4:54638765-54638784 Msa0688550:intron 35.0%
!! AGAGGAACGAAGATTTTGAT+TGG - chr4_4:54638846-54638865 Msa0688550:intron 35.0%
!! CATTTTGGTATAGTTTGTCG+AGG - chr4_4:54639101-54639120 Msa0688550:intron 35.0%
! ATTTTGCATTGCATTCCTCA+TGG - chr4_4:54639235-54639254 Msa0688550:intron 35.0%
AGTAATGTTGTAACACCATG+AGG + chr4_4:54639253-54639272 None:intergenic 35.0%
ACGACTCAAGCAGATGTTTA+AGG + chr4_4:54637176-54637195 None:intergenic 40.0%
ATCGATGTCAGGTTTAGATG+CGG + chr4_4:54637252-54637271 None:intergenic 40.0%
!!! TTTTGGTTCCGATTTCCATG+AGG - chr4_4:54637328-54637347 Msa0688550:three_prime_UTR 40.0%
CTTAAAGTGAACATACGTGC+TGG - chr4_4:54637991-54638010 Msa0688550:intron 40.0%
ACGAAAGCAGCATATCACTA+TGG - chr4_4:54638026-54638045 Msa0688550:intron 40.0%
CGAAAGCAGCATATCACTAT+GGG - chr4_4:54638027-54638046 Msa0688550:intron 40.0%
AGTTGCGACTCACTAAGAAA+AGG - chr4_4:54638061-54638080 Msa0688550:intron 40.0%
AAGGTGGGAATAAACCATGA+TGG - chr4_4:54638080-54638099 Msa0688550:intron 40.0%
!!! AGTTTTGGAGAGAACCATCA+TGG + chr4_4:54638097-54638116 None:intergenic 40.0%
GAGGAGTTAATAGGAGAAGA+AGG - chr4_4:54638242-54638261 Msa0688550:three_prime_UTR 40.0%
GAGTTAATAGGAGAAGAAGG+TGG - chr4_4:54638245-54638264 Msa0688550:three_prime_UTR 40.0%
TTCAATAGTGAAGTGAAGGG+AGG + chr4_4:54638370-54638389 None:intergenic 40.0%
CCCTTCACTTCACTATTGAA+TGG - chr4_4:54638370-54638389 Msa0688550:CDS 40.0%
GCCATTCAATAGTGAAGTGA+AGG + chr4_4:54638374-54638393 None:intergenic 40.0%
CTGCATGGCATAAAACTACA+TGG + chr4_4:54638596-54638615 None:intergenic 40.0%
ACTGGCATCATAAAACTGCA+TGG + chr4_4:54638611-54638630 None:intergenic 40.0%
!! TGCAGTTTTATGATGCCAGT+AGG - chr4_4:54638611-54638630 Msa0688550:intron 40.0%
AAAATGAAAGATGGTCCAGG+AGG - chr4_4:54638768-54638787 Msa0688550:intron 40.0%
ATAGTTCAGTCTAAACCTCC+TGG + chr4_4:54638786-54638805 None:intergenic 40.0%
AGGAGGTTTAGACTGAACTA+TGG - chr4_4:54638785-54638804 Msa0688550:intron 40.0%
GACTGAACTATGGCATGATT+CGG - chr4_4:54638795-54638814 Msa0688550:intron 40.0%
CAAAATCTTCGTTCCTCTTC+TGG + chr4_4:54638844-54638863 None:intergenic 40.0%
!!! GGAACGAAGATTTTGATTGG+TGG - chr4_4:54638849-54638868 Msa0688550:intron 40.0%
!! TTTGATTGGTGGCTTTGACA+AGG - chr4_4:54638860-54638879 Msa0688550:intron 40.0%
TTGAAGACTGCGACAACATA+TGG - chr4_4:54639017-54639036 Msa0688550:intron 40.0%
CTAAAAGATGCTAAGCGTGT+GGG + chr4_4:54639044-54639063 None:intergenic 40.0%
ACTAAAAGATGCTAAGCGTG+TGG + chr4_4:54639045-54639064 None:intergenic 40.0%
!!! TGTCGAGGTGTTGTGTTTTA+AGG - chr4_4:54639116-54639135 Msa0688550:intron 40.0%
!!! TGTTGGTAGTCTGAACCTTT+TGG - chr4_4:54639153-54639172 Msa0688550:intron 40.0%
!! TAGTCTGAACCTTTTGGTGT+AGG - chr4_4:54639159-54639178 Msa0688550:intron 40.0%
!! AGTCTGAACCTTTTGGTGTA+GGG - chr4_4:54639160-54639179 Msa0688550:intron 40.0%
ATACCATTCCCTACACCAAA+AGG + chr4_4:54639171-54639190 None:intergenic 40.0%
AGCACACTTGCTCATAAACA+AGG + chr4_4:54639277-54639296 None:intergenic 40.0%
GCATTTGGTTGCAACATACT+TGG - chr4_4:54639304-54639323 Msa0688550:intron 40.0%
AAAGGAAGATGCCATGAGAG+GGG + chr4_4:54637035-54637054 None:intergenic 45.0%
GAAAGGAAGATGCCATGAGA+GGG + chr4_4:54637036-54637055 None:intergenic 45.0%
AGAAAGGAAGATGCCATGAG+AGG + chr4_4:54637037-54637056 None:intergenic 45.0%
ATTGACCAAGATCTCGACAG+AGG + chr4_4:54637076-54637095 None:intergenic 45.0%
GGATGATTTGAGTGAACGGA+CGG + chr4_4:54637228-54637247 None:intergenic 45.0%
CGGAGGATGATTTGAGTGAA+CGG + chr4_4:54637232-54637251 None:intergenic 45.0%
TGAACAGCAACATCGATGTC+AGG + chr4_4:54637263-54637282 None:intergenic 45.0%
TCACCGAATCATCTTCCTCA+TGG + chr4_4:54637346-54637365 None:intergenic 45.0%
TGCGACTCACTAAGAAAAGG+TGG - chr4_4:54638064-54638083 Msa0688550:intron 45.0%
GCGACTCACTAAGAAAAGGT+GGG - chr4_4:54638065-54638084 Msa0688550:intron 45.0%
CTGATCATGATTTGAGAGCG+AGG - chr4_4:54638125-54638144 Msa0688550:intron 45.0%
ATCATGATTTGAGAGCGAGG+TGG - chr4_4:54638128-54638147 Msa0688550:intron 45.0%
! TGGTGGTATGATTTGAGGTG+AGG - chr4_4:54638148-54638167 Msa0688550:intron 45.0%
! GGTATGATTTGAGGTGAGGA+TGG - chr4_4:54638152-54638171 Msa0688550:intron 45.0%
GAGGTTGGAGAGGAGTTAAT+AGG - chr4_4:54638233-54638252 Msa0688550:three_prime_UTR 45.0%
! TGAACTATGGCATGATTCGG+TGG - chr4_4:54638798-54638817 Msa0688550:intron 45.0%
!! ATGGCATGATTCGGTGGTTA+CGG - chr4_4:54638804-54638823 Msa0688550:intron 45.0%
TTCAACCAGCTTCAAGGATG+TGG + chr4_4:54639002-54639021 None:intergenic 45.0%
AGGCGTAATCAGAGTCATGT+TGG - chr4_4:54639136-54639155 Msa0688550:intron 45.0%
!! GAACCTTTTGGTGTAGGGAA+TGG - chr4_4:54639165-54639184 Msa0688550:intron 45.0%
ATGAGCAAGTGTGCTGCATA+TGG - chr4_4:54639282-54639301 Msa0688550:intron 45.0%
AGTGTGCTGCATATGGCATT+TGG - chr4_4:54639289-54639308 Msa0688550:intron 45.0%
AGGCAAGGTAGAGCAGAGAA+AGG + chr4_4:54637053-54637072 None:intergenic 50.0%
! AACGGACGGTGTTAGAAGGA+AGG + chr4_4:54637214-54637233 None:intergenic 50.0%
! AGTGAACGGACGGTGTTAGA+AGG + chr4_4:54637218-54637237 None:intergenic 50.0%
GATGTCAGGTTTAGATGCGG+AGG + chr4_4:54637249-54637268 None:intergenic 50.0%
AGCGTTCTGCAACCTTTCCA+TGG - chr4_4:54637412-54637431 Msa0688550:three_prime_UTR 50.0%
GTTGCGACGTTACCATGGAA+AGG + chr4_4:54637427-54637446 None:intergenic 50.0%
ATGATTTGAGAGCGAGGTGG+TGG - chr4_4:54638131-54638150 Msa0688550:intron 50.0%
! CGAGGTGGTGGTATGATTTG+AGG - chr4_4:54638143-54638162 Msa0688550:intron 50.0%
TGAGGTGAGGATGGCAATGA+CGG - chr4_4:54638161-54638180 Msa0688550:intron 50.0%
!! AGCCATGATAGTGGTGAGGT+GGG - chr4_4:54638199-54638218 Msa0688550:three_prime_UTR 50.0%
ATAGGAGAAGAAGGTGGCAG+AGG - chr4_4:54638251-54638270 Msa0688550:three_prime_UTR 50.0%
TAGGAGAAGAAGGTGGCAGA+GGG - chr4_4:54638252-54638271 Msa0688550:three_prime_UTR 50.0%
GAGAACCACATCCTTGAAGC+TGG - chr4_4:54638994-54639013 Msa0688550:intron 50.0%
GCAGTCTTCAACCAGCTTCA+AGG + chr4_4:54639008-54639027 None:intergenic 50.0%
GAAGATGCCATGAGAGGGGA+GGG + chr4_4:54637031-54637050 None:intergenic 55.0%
AGATCTCGACAGAGGAGGCA+AGG + chr4_4:54637068-54637087 None:intergenic 55.0%
TGCCTCCTCTGTCGAGATCT+TGG - chr4_4:54637068-54637087 Msa0688550:three_prime_UTR 55.0%
GACCAAGATCTCGACAGAGG+AGG + chr4_4:54637073-54637092 None:intergenic 55.0%
GAAGGGTTGCGACGTTACCA+TGG + chr4_4:54637432-54637451 None:intergenic 55.0%
GATGGCAATGACGGTGTCTG+AGG - chr4_4:54638170-54638189 Msa0688550:three_prime_UTR 55.0%
GCAATGACGGTGTCTGAGGA+CGG - chr4_4:54638174-54638193 Msa0688550:three_prime_UTR 55.0%
CAATGACGGTGTCTGAGGAC+GGG - chr4_4:54638175-54638194 Msa0688550:three_prime_UTR 55.0%
!! CAGCCATGATAGTGGTGAGG+TGG - chr4_4:54638198-54638217 Msa0688550:three_prime_UTR 55.0%
CTCCCACCTCACCACTATCA+TGG + chr4_4:54638204-54638223 None:intergenic 55.0%
!! GCATGATTCGGTGGTTACGG+AGG - chr4_4:54638807-54638826 Msa0688550:intron 55.0%
!! TGATTCGGTGGTTACGGAGG+TGG - chr4_4:54638810-54638829 Msa0688550:intron 55.0%
!! GGTGGCTTTGACAAGGTCAG+CGG - chr4_4:54638867-54638886 Msa0688550:intron 55.0%
GGAAGATGCCATGAGAGGGG+AGG + chr4_4:54637032-54637051 None:intergenic 60.0%
AGGACGGGCAGCCATGATAG+TGG - chr4_4:54638190-54638209 Msa0688550:three_prime_UTR 60.0%
!! GGGCAGCCATGATAGTGGTG+AGG - chr4_4:54638195-54638214 Msa0688550:three_prime_UTR 60.0%
GGTGAGGTGGGAGAGAGCAA+CGG - chr4_4:54638211-54638230 Msa0688550:three_prime_UTR 60.0%
TGGGAGAGAGCAACGGAGGT+TGG - chr4_4:54638218-54638237 Msa0688550:three_prime_UTR 60.0%
GAGAGCAACGGAGGTTGGAG+AGG - chr4_4:54638223-54638242 Msa0688550:three_prime_UTR 60.0%
GAGAAGAAGGTGGCAGAGGG+AGG - chr4_4:54638255-54638274 Msa0688550:three_prime_UTR 60.0%
GGTGGTTACGGAGGTGGTGA+CGG - chr4_4:54638816-54638835 Msa0688550:intron 60.0%
! GGCTTTGACAAGGTCAGCGG+TGG - chr4_4:54638870-54638889 Msa0688550:intron 60.0%
TGACAAGGTCAGCGGTGGAG+TGG - chr4_4:54638875-54638894 Msa0688550:intron 60.0%
TGAGAGGGGAGGGAGAGCAG+AGG + chr4_4:54637021-54637040 None:intergenic 65.0%
CTGCTCTCCCTCCCCTCTCA+TGG - chr4_4:54637021-54637040 Msa0688550:three_prime_UTR 65.0%
GAGGTGGGAGAGAGCAACGG+AGG - chr4_4:54638214-54638233 Msa0688550:three_prime_UTR 65.0%
!! GGTGGTGACGGTGCCAGAAG+AGG - chr4_4:54638828-54638847 Msa0688550:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 54636984 54639458 54636984 ID=Msa0688550;Name=Msa0688550
chr4_4 mRNA 54636984 54639458 54636984 ID=Msa0688550-mRNA-1;Parent=Msa0688550;Name=Msa0688550-mRNA-1;_AED=0.23;_eAED=0.30;_QI=0|0.66|0.75|1|0|0|4|890|84
chr4_4 exon 54636984 54637689 54636984 ID=Msa0688550-mRNA-1:exon:14402;Parent=Msa0688550-mRNA-1
chr4_4 exon 54638166 54638444 54638166 ID=Msa0688550-mRNA-1:exon:14401;Parent=Msa0688550-mRNA-1
chr4_4 exon 54638562 54638615 54638562 ID=Msa0688550-mRNA-1:exon:14400;Parent=Msa0688550-mRNA-1
chr4_4 exon 54639353 54639458 54639353 ID=Msa0688550-mRNA-1:exon:14399;Parent=Msa0688550-mRNA-1
chr4_4 CDS 54639353 54639458 54639353 ID=Msa0688550-mRNA-1:cds;Parent=Msa0688550-mRNA-1
chr4_4 CDS 54638562 54638615 54638562 ID=Msa0688550-mRNA-1:cds;Parent=Msa0688550-mRNA-1
chr4_4 CDS 54638350 54638444 54638350 ID=Msa0688550-mRNA-1:cds;Parent=Msa0688550-mRNA-1
chr4_4 three_prime_UTR 54638166 54638349 54638166 ID=Msa0688550-mRNA-1:three_prime_utr;Parent=Msa0688550-mRNA-1
chr4_4 three_prime_UTR 54636984 54637689 54636984 ID=Msa0688550-mRNA-1:three_prime_utr;Parent=Msa0688550-mRNA-1
Gene Sequence

>Msa0688550

ATGAGAGACCCATTGTTATCGTTTTCATCTCAATCCTCTGCTCTCCCTCCCCTCTCATGGCATCTTCCTTTCTCTGCTCTACCTTGCCTCCTCTGTCGAGATCTTGGTGTTTTTGTGAGTTCTAAGGTAGATGGTAGAAGATTGAATTGTGAACAACATGTGAACATACGTGCTGGGAGATGTTCTGAACGAAAGCAGCATATCACTATGGGACACAAGATGAAGTTGCGACTCACTAAGAAAAGGTGGGAATAA

Protein sequence

>Msa0688550

MRDPLLSFSSQSSALPPLSWHLPFSALPCLLCRDLGVFVSSKVDGRRLNCEQHVNIRAGRCSERKQHITMGHKMKLRLTKKRWE*