AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1212740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1212740 MtrunA17_Chr4g0061431 95.217 230 11 0 1 230 1 230 3.84e-165 454
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 76 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTGTAACTTGTAATTT+TGG 0.120175 8_1:-72750331 Msa1212750:three_prime_UTR
AGATGGGAGGTTGGAATATT+TGG 0.159434 8_1:-72748241 Msa1212750:three_prime_UTR
CCTTGCTGTGATTCTGAAAA+AGG 0.193262 8_1:-72748407 Msa1212750:three_prime_UTR
GTGGGTTGGTTTGTAAATTA+AGG 0.194932 8_1:-72748183 Msa1212750:three_prime_UTR
TTTGGAATTGGTTTGTATAT+TGG 0.217078 8_1:+72748559 Msa1212740:CDS
ATTTATTTATTGTTTGTAAA+TGG 0.226227 8_1:+72748112 Msa1212740:five_prime_UTR
GGAATGGAGAAATCAATATT+TGG 0.260276 8_1:+72748541 Msa1212740:CDS
AACAAATCTAGTTGTGGTTT+TGG 0.260787 8_1:+72750542 Msa1212740:three_prime_UTR
TCTTGATGATTCTAGTATTT+CGG 0.269601 8_1:-72748347 Msa1212750:three_prime_UTR
ATCTAACTCACATGCTTGTC+TGG 0.291025 8_1:+72749942 Msa1212740:CDS
TTCTGATCTTTACCATTCTA+AGG 0.302171 8_1:+72748648 Msa1212740:CDS
TGGTTTGTAAATTAAGGTTC+TGG 0.319123 8_1:-72748177 Msa1212750:three_prime_UTR
AAGGTTCTGGCTTAGCTTCA+TGG 0.326775 8_1:-72748164 Msa1212750:three_prime_UTR
GAGAAATCAATATTTGGAAT+TGG 0.332954 8_1:+72748547 Msa1212740:CDS
ATTGCATCAATTCCTCAAAT+AGG 0.333118 8_1:-72750485 Msa1212750:three_prime_UTR
TCTGGTTTGGATTGGTGGGT+TGG 0.337391 8_1:-72748197 Msa1212750:three_prime_UTR
GAAGGGGAGGTAGGGAGAGA+TGG 0.340377 8_1:-72748258 Msa1212750:three_prime_UTR
TTGAAGAACTTATGATAAAA+TGG 0.367734 8_1:+72749996 Msa1212740:CDS
AACTCTGTTGCTAAGTTAGA+TGG 0.372705 8_1:+72750591 Msa1212740:three_prime_UTR
AAGGGGAGGTAGGGAGAGAT+GGG 0.392672 8_1:-72748257 Msa1212750:three_prime_UTR
AAGAGGGAGATGATGAAGTC+TGG 0.398949 8_1:-72748215 Msa1212750:three_prime_UTR
GGAGATGATGAAGTCTGGTT+TGG 0.401750 8_1:-72748210 Msa1212750:three_prime_UTR
GGTAGGGAGAGATGGGAGGT+TGG 0.408763 8_1:-72748250 Msa1212750:three_prime_UTR
TGAAGTCTGGTTTGGATTGG+TGG 0.432119 8_1:-72748202 Msa1212750:three_prime_UTR
AAGTGACTGGTTCATCTGTT+GGG 0.435909 8_1:+72749918 Msa1212740:CDS
GGGAGGTAGGGAGAGATGGG+AGG 0.445867 8_1:-72748254 Msa1212750:three_prime_UTR
ATATAGATTTACAGATTCTC+TGG 0.449109 8_1:+72750420 Msa1212740:three_prime_UTR
TATCATAAGTTCTTCAACAC+TGG 0.457160 8_1:-72749990 Msa1212750:three_prime_UTR
CTGGCTTAGCTTCATGGTGG+AGG 0.465525 8_1:-72748158 None:intergenic
AAGGTACGCTTTCCTATTTG+AGG 0.467002 8_1:+72750473 Msa1212740:three_prime_UTR
GTAAATCTATATGCGCGGTT+TGG 0.469164 8_1:-72750409 Msa1212750:three_prime_UTR
GAAGTCTGGTTTGGATTGGT+GGG 0.474714 8_1:-72748201 Msa1212750:three_prime_UTR
GTTGGAATATTTGGTGAAAG+AGG 0.477675 8_1:-72748232 Msa1212750:three_prime_UTR
TTGGAATATTTGGTGAAAGA+GGG 0.484949 8_1:-72748231 Msa1212750:three_prime_UTR
AAGAGGTAATATTCTTCACT+TGG 0.488829 8_1:+72748489 Msa1212740:CDS
GCTTGGAAAAGCCGAGGGAT+TGG 0.488915 8_1:+72748450 Msa1212740:CDS
CAATAAATAAATAGTAAAGT+AGG 0.503173 8_1:-72748101 None:intergenic
GGATTGGTAAGAATGTGGTT+TGG 0.503248 8_1:+72748466 Msa1212740:CDS
ATTAGGTTCTACACAAGACT+TGG 0.507328 8_1:+72749878 Msa1212740:CDS
CAGAATCACAGCAAGGAGCT+TGG 0.509095 8_1:+72748414 Msa1212740:CDS
GTAAGAATGTGGTTTGGAAG+AGG 0.511446 8_1:+72748472 Msa1212740:CDS
TCTAACTCACATGCTTGTCT+GGG 0.520091 8_1:+72749943 Msa1212740:CDS
GAAGTGACTGGTTCATCTGT+TGG 0.525549 8_1:+72749917 Msa1212740:CDS
ACAAAGAGAAACACTTGGAA+TGG 0.525859 8_1:+72748525 Msa1212740:CDS
ATGCTTGTCTGGGGAGGTGT+TGG 0.529024 8_1:+72749953 Msa1212740:CDS
GTGGAAAACAAATCTAGTTG+TGG 0.534759 8_1:+72750536 Msa1212740:three_prime_UTR
TGGCAACTATGTTATTCCAC+TGG 0.535633 8_1:+72748132 Msa1212740:five_prime_UTR
TCTAGTATTTCGGACATGGT+TGG 0.545589 8_1:-72748337 Msa1212750:three_prime_UTR
TGATGAAGTCTGGTTTGGAT+TGG 0.549707 8_1:-72748205 Msa1212750:three_prime_UTR
GTCCTAGAGTTTGGAGCTGA+AGG 0.555399 8_1:-72748384 Msa1212750:three_prime_UTR
GAAAGAAGAGGACCTTAGAA+TGG 0.557524 8_1:-72748660 Msa1212750:intron
GGGAGGTGTTGGTACTCGCA+TGG 0.557882 8_1:+72749964 Msa1212740:CDS
TGATTCTAGTATTTCGGACA+TGG 0.558688 8_1:-72748341 Msa1212750:three_prime_UTR
CCACATTCTTACCAATCCCT+CGG 0.564065 8_1:-72748461 Msa1212750:three_prime_UTR
TTGGTAACAGATAACGAGCT+TGG 0.577020 8_1:+72748433 Msa1212740:CDS
GTAACTTCTCAAGATTCTGA+AGG 0.580716 8_1:+72750454 Msa1212740:three_prime_UTR
GTGTGTAATGCATGCTACTT+CGG 0.581801 8_1:-72750308 Msa1212750:three_prime_UTR
GACCTTCAGCTCCAAACTCT+AGG 0.585104 8_1:+72748382 Msa1212740:CDS
TGGCAATGAAATTGATTCGT+TGG 0.585470 8_1:-72748317 Msa1212750:three_prime_UTR
ACTCACATGCTTGTCTGGGG+AGG 0.587828 8_1:+72749947 Msa1212740:CDS
AAACCTGTGTATGAAGTGAC+TGG 0.589730 8_1:+72749905 Msa1212740:CDS
TTAGGTTCTACACAAGACTT+GGG 0.594680 8_1:+72749879 Msa1212740:CDS
CCGAGGGATTGGTAAGAATG+TGG 0.599865 8_1:+72748461 Msa1212740:CDS
ATTAGACATGGATATGATTG+TGG 0.601421 8_1:+72748592 Msa1212740:CDS
GGAGCTGTTGCTATTAGACA+TGG 0.604767 8_1:+72748580 Msa1212740:CDS
TAACGAGCTTGGAAAAGCCG+AGG 0.622512 8_1:+72748444 Msa1212740:CDS
GAACCAGTCACTTCATACAC+AGG 0.629180 8_1:-72749908 Msa1212750:three_prime_UTR
AACGAGCTTGGAAAAGCCGA+GGG 0.631401 8_1:+72748445 Msa1212740:CDS
AGTTACAATGATCAATGTGA+AGG 0.633564 8_1:+72750342 Msa1212740:three_prime_UTR
GAAATACTAGAATCATCAAG+AGG 0.638232 8_1:+72748349 Msa1212740:CDS
AAACTACAAAGAGAAACACT+TGG 0.642328 8_1:+72748520 Msa1212740:CDS
GTTCTGGCTTAGCTTCATGG+TGG 0.651358 8_1:-72748161 Msa1212750:three_prime_UTR
AGTGACTGGTTCATCTGTTG+GGG 0.651858 8_1:+72749919 Msa1212740:CDS
CTAACTCACATGCTTGTCTG+GGG 0.662716 8_1:+72749944 Msa1212740:CDS
AATCTGTAAATCTATATGCG+CGG 0.722768 8_1:-72750414 Msa1212750:three_prime_UTR
TTCATGGTGGAGGAAGCCAG+TGG 0.747632 8_1:-72748148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTATTGTTTGTAAA+TGG + chr8_1:72748112-72748131 Msa1212740:five_prime_UTR 10.0%
!! CAGTTTATATATATATATAT+AGG + chr8_1:72750668-72750687 Msa1212740:three_prime_UTR 10.0%
!! CAATAAATAAATAGTAAAGT+AGG - chr8_1:72748104-72748123 None:intergenic 15.0%
!!! TAAAAGATGTAAAATGATTT+TGG + chr8_1:72748827-72748846 Msa1212740:intron 15.0%
!! GTTAACACAATTTAAATAAA+TGG + chr8_1:72749653-72749672 Msa1212740:intron 15.0%
!!! TTTTTTAATAACAGTTGATT+AGG + chr8_1:72749861-72749880 Msa1212740:intron 15.0%
!! AATTATCATGATATACATTT+AGG - chr8_1:72750213-72750232 Msa1212750:intron 15.0%
!!! AAATTACTAAACTTTTTTGA+AGG - chr8_1:72750511-72750530 Msa1212750:exon 15.0%
!! CAATATAAAAGTTAAGGATA+AGG - chr8_1:72748689-72748708 Msa1212750:intron 20.0%
!! AATTTCATTAACCATGAATT+TGG + chr8_1:72749714-72749733 Msa1212740:intron 20.0%
!! TTGAAGAACTTATGATAAAA+TGG + chr8_1:72749996-72750015 Msa1212740:CDS 20.0%
!!! TCATTGTAACTTGTAATTTT+GGG - chr8_1:72750333-72750352 Msa1212750:three_prime_UTR 20.0%
!!! ATCATTGTAACTTGTAATTT+TGG - chr8_1:72750334-72750353 Msa1212750:three_prime_UTR 20.0%
!! ATATATATATATATAGGGCT+TGG + chr8_1:72750674-72750693 Msa1212740:three_prime_UTR 20.0%
!! TTTGAATCTGTTCTTTTGAA+GGG - chr8_1:72748278-72748297 Msa1212750:three_prime_UTR 25.0%
!! ATTTGAATCTGTTCTTTTGA+AGG - chr8_1:72748279-72748298 Msa1212750:three_prime_UTR 25.0%
!! TCTTGATGATTCTAGTATTT+CGG - chr8_1:72748350-72748369 Msa1212750:three_prime_UTR 25.0%
!! GAGAAATCAATATTTGGAAT+TGG + chr8_1:72748547-72748566 Msa1212740:CDS 25.0%
!!! TTTGGAATTGGTTTGTATAT+TGG + chr8_1:72748559-72748578 Msa1212740:CDS 25.0%
! ATAAAAGTTAAGGATAAGGT+TGG - chr8_1:72748685-72748704 Msa1212750:intron 25.0%
! TGCAGACAATATAAAAGTTA+AGG - chr8_1:72748695-72748714 Msa1212750:intron 25.0%
!!! GTCATTTTAATAAGAAAGTC+CGG + chr8_1:72748896-72748915 Msa1212740:intron 25.0%
!! TAAGTTCTTTTTGTACATTC+TGG + chr8_1:72749221-72749240 Msa1212740:intron 25.0%
! CAAAAACACAAAAATCAGAA+TGG - chr8_1:72749291-72749310 Msa1212750:intron 25.0%
!!! TTCTGATTTTTGTGTTTTTG+CGG + chr8_1:72749291-72749310 Msa1212740:intron 25.0%
! GTTATAGAATTAGGATTGTT+AGG + chr8_1:72749465-72749484 Msa1212740:intron 25.0%
!!! GGTTTTTTAATGAGACAATT+TGG + chr8_1:72749489-72749508 Msa1212740:intron 25.0%
! TCAGCAAATATTATTTAGCT+AGG - chr8_1:72749590-72749609 Msa1212750:intron 25.0%
! CTTATATATGTTGCATAAGA+TGG + chr8_1:72750063-72750082 Msa1212740:intron 25.0%
! ATATAGATTTACAGATTCTC+TGG + chr8_1:72750420-72750439 Msa1212740:three_prime_UTR 25.0%
!! AAGTTTAGTAATTTTCCTTG+TGG + chr8_1:72750517-72750536 Msa1212740:three_prime_UTR 25.0%
!!! TTTACAGGAGTTTTTTATTG+TGG - chr8_1:72750618-72750637 Msa1212750:intron 25.0%
! CAATAAAAAACTCCTGTAAA+AGG + chr8_1:72750618-72750637 Msa1212740:three_prime_UTR 25.0%
! TGGTTTGTAAATTAAGGTTC+TGG - chr8_1:72748180-72748199 Msa1212750:three_prime_UTR 30.0%
! TTGGAATATTTGGTGAAAGA+GGG - chr8_1:72748234-72748253 Msa1212750:three_prime_UTR 30.0%
!! TTGAATCTGTTCTTTTGAAG+GGG - chr8_1:72748277-72748296 Msa1212750:three_prime_UTR 30.0%
GAAATACTAGAATCATCAAG+AGG + chr8_1:72748349-72748368 Msa1212740:CDS 30.0%
AAGAGGTAATATTCTTCACT+TGG + chr8_1:72748489-72748508 Msa1212740:CDS 30.0%
AAACTACAAAGAGAAACACT+TGG + chr8_1:72748520-72748539 Msa1212740:CDS 30.0%
GGAATGGAGAAATCAATATT+TGG + chr8_1:72748541-72748560 Msa1212740:CDS 30.0%
ATTAGACATGGATATGATTG+TGG + chr8_1:72748592-72748611 Msa1212740:CDS 30.0%
TTCTGATCTTTACCATTCTA+AGG + chr8_1:72748648-72748667 Msa1212740:CDS 30.0%
! CATCTTTTATACACAGTAAG+TGG - chr8_1:72748816-72748835 Msa1212750:intron 30.0%
AAATGATTCTGTATGTCCAT+TGG + chr8_1:72748857-72748876 Msa1212740:intron 30.0%
AATGATTCTGTATGTCCATT+GGG + chr8_1:72748858-72748877 Msa1212740:intron 30.0%
! TTTTAATAAGAAAGTCCGGA+AGG + chr8_1:72748900-72748919 Msa1212740:intron 30.0%
TTTAATAAGAAAGTCCGGAA+GGG + chr8_1:72748901-72748920 Msa1212740:intron 30.0%
GTTATTTGGAAAGCTAGAAA+TGG + chr8_1:72748955-72748974 Msa1212740:intron 30.0%
TGGAATGATCTTTAACAAAG+CGG + chr8_1:72748975-72748994 Msa1212740:intron 30.0%
TCCTGTTCTGTTATAGAATT+AGG + chr8_1:72749456-72749475 Msa1212740:intron 30.0%
TCCTAATTCTATAACAGAAC+AGG - chr8_1:72749460-72749479 Msa1212750:intron 30.0%
ATAGAATTAGGATTGTTAGG+AGG + chr8_1:72749468-72749487 Msa1212740:intron 30.0%
TTTGAACACTTACTATGAGA+CGG + chr8_1:72749779-72749798 Msa1212740:intron 30.0%
TATCATAAGTTCTTCAACAC+TGG - chr8_1:72749993-72750012 Msa1212750:three_prime_UTR 30.0%
! AATAGACAAGTTTTACAGAC+AGG - chr8_1:72750097-72750116 Msa1212750:intron 30.0%
! TCATGATATACATTTAGGAC+AGG - chr8_1:72750208-72750227 Msa1212750:intron 30.0%
AGTTACAATGATCAATGTGA+AGG + chr8_1:72750342-72750361 Msa1212740:three_prime_UTR 30.0%
AATCTGTAAATCTATATGCG+CGG - chr8_1:72750417-72750436 Msa1212750:three_prime_UTR 30.0%
ATTGCATCAATTCCTCAAAT+AGG - chr8_1:72750488-72750507 Msa1212750:three_prime_UTR 30.0%
!! AACTAGATTTGTTTTCCACA+AGG - chr8_1:72750535-72750554 Msa1212750:CDS 30.0%
! AACAAATCTAGTTGTGGTTT+TGG + chr8_1:72750542-72750561 Msa1212740:three_prime_UTR 30.0%
!!! TGTGGTTTTGGTTGAAAATT+TGG + chr8_1:72750554-72750573 Msa1212740:three_prime_UTR 30.0%
! AACTGTAGATTTCCTTTTAC+AGG - chr8_1:72750633-72750652 Msa1212750:intron 30.0%
!! GTGGGTTGGTTTGTAAATTA+AGG - chr8_1:72748186-72748205 Msa1212750:three_prime_UTR 35.0%
! GTTGGAATATTTGGTGAAAG+AGG - chr8_1:72748235-72748254 Msa1212750:three_prime_UTR 35.0%
!! TGGCAATGAAATTGATTCGT+TGG - chr8_1:72748320-72748339 Msa1212750:three_prime_UTR 35.0%
TGATTCTAGTATTTCGGACA+TGG - chr8_1:72748344-72748363 Msa1212750:three_prime_UTR 35.0%
! CTTGCTGTGATTCTGAAAAA+GGG - chr8_1:72748409-72748428 Msa1212750:three_prime_UTR 35.0%
ACAAAGAGAAACACTTGGAA+TGG + chr8_1:72748525-72748544 Msa1212740:CDS 35.0%
TCTTTAACAAAGCGGTTGTA+AGG + chr8_1:72748983-72749002 Msa1212740:intron 35.0%
GTTAAACCGCTTTAATACTC+CGG + chr8_1:72749053-72749072 Msa1212740:intron 35.0%
TTATCTCATCAAACACTCCA+CGG - chr8_1:72749109-72749128 Msa1212750:intron 35.0%
ACAGAAGAAGAAAACCAGTA+GGG - chr8_1:72749182-72749201 Msa1212750:intron 35.0%
AACAGAAGAAGAAAACCAGT+AGG - chr8_1:72749183-72749202 Msa1212750:intron 35.0%
! TCCTTTTCCTTTTTTTCCAG+CGG + chr8_1:72749358-72749377 Msa1212740:intron 35.0%
! GGTTTAGGCACTTTTCATTT+TGG + chr8_1:72749418-72749437 Msa1212740:intron 35.0%
ATTAACCATGAATTTGGACG+TGG + chr8_1:72749720-72749739 Msa1212740:intron 35.0%
GTTTGAACACCTGCAAATTA+TGG - chr8_1:72749750-72749769 Msa1212750:intron 35.0%
ATTAGGTTCTACACAAGACT+TGG + chr8_1:72749878-72749897 Msa1212740:CDS 35.0%
TTAGGTTCTACACAAGACTT+GGG + chr8_1:72749879-72749898 Msa1212740:CDS 35.0%
! AGATATCTTCTAGCTAGCAA+AGG + chr8_1:72750166-72750185 Msa1212740:intron 35.0%
GTAACTTCTCAAGATTCTGA+AGG + chr8_1:72750454-72750473 Msa1212740:three_prime_UTR 35.0%
GTGGAAAACAAATCTAGTTG+TGG + chr8_1:72750536-72750555 Msa1212740:three_prime_UTR 35.0%
AACTCTGTTGCTAAGTTAGA+TGG + chr8_1:72750591-72750610 Msa1212740:three_prime_UTR 35.0%
TGGCAACTATGTTATTCCAC+TGG + chr8_1:72748132-72748151 Msa1212740:five_prime_UTR 40.0%
!! TGATGAAGTCTGGTTTGGAT+TGG - chr8_1:72748208-72748227 Msa1212750:three_prime_UTR 40.0%
AGATGGGAGGTTGGAATATT+TGG - chr8_1:72748244-72748263 Msa1212750:three_prime_UTR 40.0%
!! AATCTGTTCTTTTGAAGGGG+AGG - chr8_1:72748274-72748293 Msa1212750:three_prime_UTR 40.0%
TCTAGTATTTCGGACATGGT+TGG - chr8_1:72748340-72748359 Msa1212750:three_prime_UTR 40.0%
TGAAAAAGGGTCCTAGAGTT+TGG - chr8_1:72748396-72748415 Msa1212750:three_prime_UTR 40.0%
! CCTTGCTGTGATTCTGAAAA+AGG - chr8_1:72748410-72748429 Msa1212750:three_prime_UTR 40.0%
!!! CCTTTTTCAGAATCACAGCA+AGG + chr8_1:72748407-72748426 Msa1212740:CDS 40.0%
! TTGGTAACAGATAACGAGCT+TGG + chr8_1:72748433-72748452 Msa1212740:CDS 40.0%
! GGATTGGTAAGAATGTGGTT+TGG + chr8_1:72748466-72748485 Msa1212740:CDS 40.0%
! GTAAGAATGTGGTTTGGAAG+AGG + chr8_1:72748472-72748491 Msa1212740:CDS 40.0%
GAAAGAAGAGGACCTTAGAA+TGG - chr8_1:72748663-72748682 Msa1212750:intron 40.0%
AGGATAAGGTTGGAAAGAAG+AGG - chr8_1:72748675-72748694 Msa1212750:intron 40.0%
TGTATGTCCATTGGGAATGT+TGG + chr8_1:72748866-72748885 Msa1212740:intron 40.0%
GTATGTCCATTGGGAATGTT+GGG + chr8_1:72748867-72748886 Msa1212740:intron 40.0%
! AAGCTGCGATTTGGGTTATT+TGG + chr8_1:72748941-72748960 Msa1212740:intron 40.0%
TTAACAAAGCGGTTGTAAGG+TGG + chr8_1:72748986-72749005 Msa1212740:intron 40.0%
TAACAAAGCGGTTGTAAGGT+GGG + chr8_1:72748987-72749006 Msa1212740:intron 40.0%
GGAATTAGTGGAAGAGGTTA+AGG + chr8_1:72749011-72749030 Msa1212740:intron 40.0%
TATCTCATCAAACACTCCAC+GGG - chr8_1:72749108-72749127 Msa1212750:intron 40.0%
!! CATTCTGGCTTTCTGTTCTT+CGG + chr8_1:72749236-72749255 Msa1212740:intron 40.0%
!! TTTGCGGCTTTGTTTACTTC+TGG + chr8_1:72749307-72749326 Msa1212740:intron 40.0%
!! GGCTTTGTTTACTTCTGGTT+AGG + chr8_1:72749312-72749331 Msa1212740:intron 40.0%
ACCGCTGGAAAAAAAGGAAA+AGG - chr8_1:72749362-72749381 Msa1212750:intron 40.0%
! TTTTCCTTTTTTTCCAGCGG+TGG + chr8_1:72749361-72749380 Msa1212740:intron 40.0%
!!! GGTTTGTTTTGTAGGCAGTT+GGG + chr8_1:72749395-72749414 Msa1212740:intron 40.0%
!!! GTTTGTTTTGTAGGCAGTTG+GGG + chr8_1:72749396-72749415 Msa1212740:intron 40.0%
!!! TTTGTTTTGTAGGCAGTTGG+GGG + chr8_1:72749397-72749416 Msa1212740:intron 40.0%
TGATTATGTGCCTTTGATCG+TGG + chr8_1:72749512-72749531 Msa1212740:intron 40.0%
GATTATGTGCCTTTGATCGT+GGG + chr8_1:72749513-72749532 Msa1212740:intron 40.0%
!!! GTACACTTTTTCCTCCTTAG+CGG + chr8_1:72749543-72749562 Msa1212740:intron 40.0%
!!! TACACTTTTTCCTCCTTAGC+GGG + chr8_1:72749544-72749563 Msa1212740:intron 40.0%
GTTAACCACGTCCAAATTCA+TGG - chr8_1:72749728-72749747 Msa1212750:intron 40.0%
! CGTGGTTAACCATAATTTGC+AGG + chr8_1:72749738-72749757 Msa1212740:intron 40.0%
AACACTTACTATGAGACGGA+GGG + chr8_1:72749783-72749802 Msa1212740:intron 40.0%
GGAGTAGTAAGATGGTACAT+GGG + chr8_1:72749804-72749823 Msa1212740:intron 40.0%
AAACCTGTGTATGAAGTGAC+TGG + chr8_1:72749905-72749924 Msa1212740:CDS 40.0%
! AAGTGACTGGTTCATCTGTT+GGG + chr8_1:72749918-72749937 Msa1212740:CDS 40.0%
ATCTAACTCACATGCTTGTC+TGG + chr8_1:72749942-72749961 Msa1212740:CDS 40.0%
TCTAACTCACATGCTTGTCT+GGG + chr8_1:72749943-72749962 Msa1212740:CDS 40.0%
! GTGTGTAATGCATGCTACTT+CGG - chr8_1:72750311-72750330 Msa1212750:three_prime_UTR 40.0%
GTAAATCTATATGCGCGGTT+TGG - chr8_1:72750412-72750431 Msa1212750:three_prime_UTR 40.0%
AAGGTACGCTTTCCTATTTG+AGG + chr8_1:72750473-72750492 Msa1212740:three_prime_UTR 40.0%
!! AAGGTTCTGGCTTAGCTTCA+TGG - chr8_1:72748167-72748186 Msa1212750:three_prime_UTR 45.0%
!! GAAGTCTGGTTTGGATTGGT+GGG - chr8_1:72748204-72748223 Msa1212750:three_prime_UTR 45.0%
!! TGAAGTCTGGTTTGGATTGG+TGG - chr8_1:72748205-72748224 Msa1212750:three_prime_UTR 45.0%
GGAGATGATGAAGTCTGGTT+TGG - chr8_1:72748213-72748232 Msa1212750:three_prime_UTR 45.0%
AAGAGGGAGATGATGAAGTC+TGG - chr8_1:72748218-72748237 Msa1212750:three_prime_UTR 45.0%
!! GTTCTTTTGAAGGGGAGGTA+GGG - chr8_1:72748269-72748288 Msa1212750:three_prime_UTR 45.0%
!! TGTTCTTTTGAAGGGGAGGT+AGG - chr8_1:72748270-72748289 Msa1212750:three_prime_UTR 45.0%
CCACATTCTTACCAATCCCT+CGG - chr8_1:72748464-72748483 Msa1212750:three_prime_UTR 45.0%
! GGAGCTGTTGCTATTAGACA+TGG + chr8_1:72748580-72748599 Msa1212740:CDS 45.0%
AAATCATCCGCAATCCCTTC+CGG - chr8_1:72748918-72748937 Msa1212750:intron 45.0%
! TGATTTGGCAAGCTGCGATT+TGG + chr8_1:72748932-72748951 Msa1212740:intron 45.0%
GATTTGGCAAGCTGCGATTT+GGG + chr8_1:72748933-72748952 Msa1212740:intron 45.0%
TGTAAGGTGGGAGGAATTAG+TGG + chr8_1:72748999-72749018 Msa1212740:intron 45.0%
AAGAGGTTAAGGTGATGTCG+TGG + chr8_1:72749022-72749041 Msa1212740:intron 45.0%
! TGCAAGCCGGAGTATTAAAG+CGG - chr8_1:72749062-72749081 Msa1212750:intron 45.0%
CATTCGTAGAACATGCAAGC+CGG - chr8_1:72749075-72749094 Msa1212750:intron 45.0%
GCATGTTCTACGAATGGAGT+TGG + chr8_1:72749079-72749098 Msa1212740:intron 45.0%
CTGCTGCTGTCTGTTTGTTT+GGG + chr8_1:72749132-72749151 Msa1212740:intron 45.0%
TGCTGCTGTCTGTTTGTTTG+GGG + chr8_1:72749133-72749152 Msa1212740:intron 45.0%
TTCTTCTTCTGTTCCTGCTG+CGG + chr8_1:72749190-72749209 Msa1212740:intron 45.0%
TCTGTTCTTCGGTTGACAGT+AGG + chr8_1:72749247-72749266 Msa1212740:intron 45.0%
CTGTTCTTCGGTTGACAGTA+GGG + chr8_1:72749248-72749267 Msa1212740:intron 45.0%
!!! TGCTGGAGGGTTTGTTTTGT+AGG + chr8_1:72749387-72749406 Msa1212740:intron 45.0%
!!! GGGTTTGTTTTGTAGGCAGT+TGG + chr8_1:72749394-72749413 Msa1212740:intron 45.0%
GGCTAATTGCGTTCAGTAGA+TGG + chr8_1:72749674-72749693 Msa1212740:intron 45.0%
GAACACTTACTATGAGACGG+AGG + chr8_1:72749782-72749801 Msa1212740:intron 45.0%
GGGAGTAGTAAGATGGTACA+TGG + chr8_1:72749803-72749822 Msa1212740:intron 45.0%
GAACCAGTCACTTCATACAC+AGG - chr8_1:72749911-72749930 Msa1212750:three_prime_UTR 45.0%
! GAAGTGACTGGTTCATCTGT+TGG + chr8_1:72749917-72749936 Msa1212740:CDS 45.0%
! AGTGACTGGTTCATCTGTTG+GGG + chr8_1:72749919-72749938 Msa1212740:CDS 45.0%
CTAACTCACATGCTTGTCTG+GGG + chr8_1:72749944-72749963 Msa1212740:CDS 45.0%
!!! CTTTTATTATAATTTTAAAA+TGG + chr8_1:72749631-72749650 Msa1212740:intron 5.0%
!! AGTTTATATATATATATATA+GGG + chr8_1:72750669-72750688 Msa1212740:three_prime_UTR 5.0%
!! GTTCTGGCTTAGCTTCATGG+TGG - chr8_1:72748164-72748183 Msa1212750:three_prime_UTR 50.0%
!! TCTGGTTTGGATTGGTGGGT+TGG - chr8_1:72748200-72748219 Msa1212750:three_prime_UTR 50.0%
GACCTTCAGCTCCAAACTCT+AGG + chr8_1:72748382-72748401 Msa1212740:CDS 50.0%
! GTCCTAGAGTTTGGAGCTGA+AGG - chr8_1:72748387-72748406 Msa1212750:three_prime_UTR 50.0%
CAGAATCACAGCAAGGAGCT+TGG + chr8_1:72748414-72748433 Msa1212740:CDS 50.0%
TAACGAGCTTGGAAAAGCCG+AGG + chr8_1:72748444-72748463 Msa1212740:CDS 50.0%
AACGAGCTTGGAAAAGCCGA+GGG + chr8_1:72748445-72748464 Msa1212740:CDS 50.0%
! CCGAGGGATTGGTAAGAATG+TGG + chr8_1:72748461-72748480 Msa1212740:CDS 50.0%
TGTCCATTGGGAATGTTGGG+TGG + chr8_1:72748870-72748889 Msa1212740:intron 50.0%
GTCCATTGGGAATGTTGGGT+GGG + chr8_1:72748871-72748890 Msa1212740:intron 50.0%
AGAAAGTCCGGAAGGGATTG+CGG + chr8_1:72748908-72748927 Msa1212740:intron 50.0%
GGAAGGGATTGCGGATGATT+TGG + chr8_1:72748917-72748936 Msa1212740:intron 50.0%
GTGGGAGGAATTAGTGGAAG+AGG + chr8_1:72749005-72749024 Msa1212740:intron 50.0%
AGGTTAAGGTGATGTCGTGG+AGG + chr8_1:72749025-72749044 Msa1212740:intron 50.0%
TTAAGGTGATGTCGTGGAGG+TGG + chr8_1:72749028-72749047 Msa1212740:intron 50.0%
CGGCTTGCATGTTCTACGAA+TGG + chr8_1:72749073-72749092 Msa1212740:intron 50.0%
GCTGCTGCTGTCTGTTTGTT+TGG + chr8_1:72749131-72749150 Msa1212740:intron 50.0%
! GTTTGGGGTAGAATTGCAGC+TGG + chr8_1:72749148-72749167 Msa1212740:intron 50.0%
TCTGGTTAGGCTACTGTTGC+TGG + chr8_1:72749325-72749344 Msa1212740:intron 50.0%
ACAGCCACCGCTGGAAAAAA+AGG - chr8_1:72749368-72749387 Msa1212750:intron 50.0%
TTGTAGGCAGTTGGGGGTTT+AGG + chr8_1:72749403-72749422 Msa1212740:intron 50.0%
!! ACAAGAGTGCCCACGATCAA+AGG - chr8_1:72749525-72749544 Msa1212750:intron 50.0%
AAGACGCACTAAACCCGCTA+AGG - chr8_1:72749560-72749579 Msa1212750:intron 50.0%
AGACGGAGGGAGTAGTAAGA+TGG + chr8_1:72749796-72749815 Msa1212740:intron 50.0%
AAAGTGTGATCTGCTGCCTC+AGG + chr8_1:72750272-72750291 Msa1212740:intron 50.0%
CGGTATTTCACGTACACCTG+AGG - chr8_1:72750291-72750310 Msa1212750:intron 50.0%
! TTCATGGTGGAGGAAGCCAG+TGG - chr8_1:72748151-72748170 None:intergenic 55.0%
CTGGCTTAGCTTCATGGTGG+AGG - chr8_1:72748161-72748180 Msa1212750:three_prime_UTR 55.0%
AAGGGGAGGTAGGGAGAGAT+GGG - chr8_1:72748260-72748279 Msa1212750:three_prime_UTR 55.0%
GCTTGGAAAAGCCGAGGGAT+TGG + chr8_1:72748450-72748469 Msa1212740:CDS 55.0%
CTCCCACCCAACATTCCCAA+TGG - chr8_1:72748876-72748895 Msa1212750:intron 55.0%
CATTGGGAATGTTGGGTGGG+AGG + chr8_1:72748874-72748893 Msa1212740:intron 55.0%
CAAAGCGGTTGTAAGGTGGG+AGG + chr8_1:72748990-72749009 Msa1212740:intron 55.0%
GGGTAGAATTGCAGCTGGTG+CGG + chr8_1:72749153-72749172 Msa1212740:intron 55.0%
CTTCTGTTCCTGCTGCGGTT+CGG + chr8_1:72749195-72749214 Msa1212740:intron 55.0%
TTCTGTTCCTGCTGCGGTTC+GGG + chr8_1:72749196-72749215 Msa1212740:intron 55.0%
ACTTAAACCCGAACCGCAGC+AGG - chr8_1:72749206-72749225 Msa1212750:intron 55.0%
ACGCACTAAACCCGCTAAGG+AGG - chr8_1:72749557-72749576 Msa1212750:intron 55.0%
ACTCACATGCTTGTCTGGGG+AGG + chr8_1:72749947-72749966 Msa1212740:CDS 55.0%
! ATGCTTGTCTGGGGAGGTGT+TGG + chr8_1:72749953-72749972 Msa1212740:CDS 55.0%
GGTAGGGAGAGATGGGAGGT+TGG - chr8_1:72748253-72748272 Msa1212750:three_prime_UTR 60.0%
GAAGGGGAGGTAGGGAGAGA+TGG - chr8_1:72748261-72748280 Msa1212750:three_prime_UTR 60.0%
!! CGAATGGAGTTGGTGTCCCG+TGG + chr8_1:72749089-72749108 Msa1212740:intron 60.0%
AGCTGGTGCGGTTTCCCTAC+TGG + chr8_1:72749165-72749184 Msa1212740:intron 60.0%
! TTTTCCAGCGGTGGCTGTGC+TGG + chr8_1:72749370-72749389 Msa1212740:intron 60.0%
!! GGGAGGTGTTGGTACTCGCA+TGG + chr8_1:72749964-72749983 Msa1212740:CDS 60.0%
GGGAGGTAGGGAGAGATGGG+AGG - chr8_1:72748257-72748276 Msa1212750:three_prime_UTR 65.0%
TCCAGCGGTGGCTGTGCTGG+AGG + chr8_1:72749373-72749392 Msa1212740:intron 70.0%
CCAGCGGTGGCTGTGCTGGA+GGG + chr8_1:72749374-72749393 Msa1212740:intron 70.0%
CCCTCCAGCACAGCCACCGC+TGG - chr8_1:72749377-72749396 Msa1212750:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 72748065 72750711 72748065 ID=Msa1212740;Name=Msa1212740
chr8_1 mRNA 72748065 72750711 72748065 ID=Msa1212740-mRNA-1;Parent=Msa1212740;Name=Msa1212740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=101|1|1|1|1|1|3|395|230
chr8_1 exon 72748065 72748669 72748065 ID=Msa1212740-mRNA-1:exon:24560;Parent=Msa1212740-mRNA-1
chr8_1 exon 72749875 72750040 72749875 ID=Msa1212740-mRNA-1:exon:24561;Parent=Msa1212740-mRNA-1
chr8_1 exon 72750294 72750711 72750294 ID=Msa1212740-mRNA-1:exon:24562;Parent=Msa1212740-mRNA-1
chr8_1 five_prime_UTR 72748065 72748165 72748065 ID=Msa1212740-mRNA-1:five_prime_utr;Parent=Msa1212740-mRNA-1
chr8_1 CDS 72748166 72748669 72748166 ID=Msa1212740-mRNA-1:cds;Parent=Msa1212740-mRNA-1
chr8_1 CDS 72749875 72750040 72749875 ID=Msa1212740-mRNA-1:cds;Parent=Msa1212740-mRNA-1
chr8_1 CDS 72750294 72750316 72750294 ID=Msa1212740-mRNA-1:cds;Parent=Msa1212740-mRNA-1
chr8_1 three_prime_UTR 72750317 72750711 72750317 ID=Msa1212740-mRNA-1:three_prime_utr;Parent=Msa1212740-mRNA-1
Gene Sequence

>Msa1212740

ATGAAGCTAAGCCAGAACCTTAATTTACAAACCAACCCACCAATCCAAACCAGACTTCATCATCTCCCTCTTTCACCAAATATTCCAACCTCCCATCTCTCCCTACCTCCCCTTCAAAAGAACAGATTCAAATGCATTACTGTAAAAGCTACCAACGAATCAATTTCATTGCCAACCATGTCCGAAATACTAGAATCATCAAGAGGACAAAAACTCGACCTTCAGCTCCAAACTCTAGGACCCTTTTTCAGAATCACAGCAAGGAGCTTGGTAACAGATAACGAGCTTGGAAAAGCCGAGGGATTGGTAAGAATGTGGTTTGGAAGAGGTAATATTCTTCACTTGGATTCTATCAAACTACAAAGAGAAACACTTGGAATGGAGAAATCAATATTTGGAATTGGTTTGTATATTGGAGCTGTTGCTATTAGACATGGATATGATTGTGGTTGTAAATCAGCTCAGTTACTTGCTATCAATGATTCTGATCTTTACCATTCTAAGTTGATTAGGTTCTACACAAGACTTGGGTTTAAACCTGTGTATGAAGTGACTGGTTCATCTGTTGGGGATCTAACTCACATGCTTGTCTGGGGAGGTGTTGGTACTCGCATGGATGCCAGTGTTGAAGAACTTATGATAAAATGGTGTAAAAGATTTAAAAAAACAAGTGTACGTGAAATACCGAAGTAG

Protein sequence

>Msa1212740

MKLSQNLNLQTNPPIQTRLHHLPLSPNIPTSHLSLPPLQKNRFKCITVKATNESISLPTMSEILESSRGQKLDLQLQTLGPFFRITARSLVTDNELGKAEGLVRMWFGRGNILHLDSIKLQRETLGMEKSIFGIGLYIGAVAIRHGYDCGCKSAQLLAINDSDLYHSKLIRFYTRLGFKPVYEVTGSSVGDLTHMLVWGGVGTRMDASVEELMIKWCKRFKKTSVREIPK*