AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1412520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412520 MtrunA17_Chr4g0005861 94.203 276 12 3 1 273 1 275 0.0 528
Msa1412520 MtrunA17_Chr7g0241731 60.870 253 84 8 13 263 2 241 2.84e-84 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412520 AT3G09050.1 52.263 243 101 5 29 262 7 243 6.12e-73 224

Find 56 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCGTCTTACGGATTATT+TGG 0.131531 tig0023923:+11554 Msa1412520:CDS
CTGAATTTGTAACTTATATT+TGG 0.134552 tig0023923:+13455 Msa1412520:three_prime_UTR
ATTGGTGAAGATGCTCTTAA+AGG 0.254433 tig0023923:+11636 Msa1412520:CDS
AATGTTTACTTATTCTTCAT+TGG 0.294155 tig0023923:+12948 Msa1412520:CDS
TGGAAGAAAGTTGCAGTTCT+TGG 0.299282 tig0023923:+13029 Msa1412520:CDS
CCAAGTGAGTGCTTACAAAT+TGG 0.300920 tig0023923:+13218 Msa1412520:three_prime_UTR
CCAGGTTGTGAAGTATTATC+AGG 0.334032 tig0023923:-11474 None:intergenic
GAAACACGAGGATAAAACTA+TGG 0.335146 tig0023923:+11275 Msa1412520:exon
GTTGATAGAAGAAGGATAGA+AGG 0.335400 tig0023923:-11364 None:intergenic
GTAACAACAAATGAGGAAAA+TGG 0.350272 tig0023923:+12909 Msa1412520:CDS
TCTGAATACTTGACACAGTT+TGG 0.366087 tig0023923:+11585 Msa1412520:CDS
GAGTGAGATGCTAGCATTTG+AGG 0.367845 tig0023923:+12713 Msa1412520:CDS
ATTAGATGTTTCAGTTTATG+AGG 0.372304 tig0023923:+13171 Msa1412520:three_prime_UTR
TCTCATAAATGAGCACTTGA+TGG 0.378203 tig0023923:-13387 None:intergenic
TTCTTCTTGTGTTGTGGTGG+GGG 0.383441 tig0023923:-11410 None:intergenic
AAGTTACAAATTCAGTGGTT+AGG 0.396419 tig0023923:-13447 None:intergenic
TGAAATACAGCCGATAATAT+TGG 0.398165 tig0023923:+13272 Msa1412520:three_prime_UTR
ATAGAAGGAAGGGTGAAATA+TGG 0.405812 tig0023923:-11349 None:intergenic
AACTTAGTCACCAATATTAT+CGG 0.415936 tig0023923:-13282 None:intergenic
CAAGTTGAGCTAGTAGCTCT+TGG 0.422521 tig0023923:-11512 None:intergenic
ACTTCTTCTTGTGTTGTGGT+GGG 0.425298 tig0023923:-11412 None:intergenic
CTTCTTCTTGTGTTGTGGTG+GGG 0.430419 tig0023923:-11411 None:intergenic
AGTATTATCAGGTTCATCAT+TGG 0.435688 tig0023923:-11463 None:intergenic
AATGGAGATTGAAGGACAAA+TGG 0.440803 tig0023923:+12785 Msa1412520:CDS
GGACTATTCTTTAAGAACTT+AGG 0.444508 tig0023923:+12825 Msa1412520:CDS
CCAATTTGTAAGCACTCACT+TGG 0.447191 tig0023923:-13218 None:intergenic
AACTTCTTCTTGTGTTGTGG+TGG 0.447722 tig0023923:-11413 None:intergenic
CATCATTAAGTAGTACTGAT+TGG 0.456180 tig0023923:+13009 Msa1412520:CDS
ACTAGACAGAGTAGAGTTTG+AGG 0.456846 tig0023923:+12746 Msa1412520:CDS
TGGCTTTGAACATCACCTCC+AGG 0.458846 tig0023923:-11492 None:intergenic
AAAGCTGAAATTGATAAGAT+TGG 0.462568 tig0023923:+11618 Msa1412520:CDS
TTTAAGAACTTAGGACAGAA+AGG 0.478730 tig0023923:+12834 Msa1412520:CDS
ATAGAAGAAGGATAGAAGGA+AGG 0.483138 tig0023923:-11360 None:intergenic
ATCAGGTTCATCATTGGAGT+TGG 0.486180 tig0023923:-11457 None:intergenic
CAGAACTTCTTCTTGTGTTG+TGG 0.493087 tig0023923:-11416 None:intergenic
GGAAAGTGAAAGCAAAGTAA+TGG 0.500197 tig0023923:+12767 Msa1412520:CDS
TAGAAGAAGGATAGAAGGAA+GGG 0.500325 tig0023923:-11359 None:intergenic
CAATTTGTAAGCACTCACTT+GGG 0.502986 tig0023923:-13217 None:intergenic
TGAAGATGCTCTTAAAGGAT+TGG 0.511035 tig0023923:+11641 Msa1412520:CDS
ATGGAAGTTGACAGAAATGA+AGG 0.525154 tig0023923:+12804 Msa1412520:CDS
GTGGTGGTGTTGATAGAAGA+AGG 0.543371 tig0023923:-11372 None:intergenic
GAAAGATGTAACAACAAATG+AGG 0.557127 tig0023923:+12902 Msa1412520:CDS
TTAGATGTTTCAGTTTATGA+GGG 0.559230 tig0023923:+13172 Msa1412520:three_prime_UTR
AGCAAAGTAATGGAGATTGA+AGG 0.564863 tig0023923:+12777 Msa1412520:CDS
AATATAAGTTACAAATTCAG+TGG 0.566872 tig0023923:-13452 None:intergenic
AAAGATGATGAACAATGAAG+AGG 0.571685 tig0023923:+13113 Msa1412520:exon
CCTGATAATACTTCACAACC+TGG 0.574595 tig0023923:+11474 Msa1412520:CDS
GGGGTGCAGAGTAGTAAAAG+TGG 0.581339 tig0023923:-11391 None:intergenic
AGTTCTTGGAGCTATTCTTG+TGG 0.591041 tig0023923:+13043 Msa1412520:CDS
AAACACGAGGATAAAACTAT+GGG 0.595359 tig0023923:+11276 Msa1412520:exon
AATTTGTAAGCACTCACTTG+GGG 0.602776 tig0023923:-13216 None:intergenic
ACTATGGGAGCTGACATACA+TGG 0.635758 tig0023923:+11291 Msa1412520:exon
TGCAATTCAGCAGTATAACA+TGG 0.647077 tig0023923:-13306 None:intergenic
GTGCAGAGTAGTAAAAGTGG+TGG 0.674073 tig0023923:-11388 None:intergenic
GATAATACTTCACAACCTGG+AGG 0.739356 tig0023923:+11477 Msa1412520:CDS
ATAATGTACAAAGAAACACG+AGG 0.838573 tig0023923:+11263 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATCTTATAAAAAAATA+TGG - tig0023923:12453-12472 None:intergenic 10.0%
!! ACATATCTTATAAAAAAATA+TGG - tig0023923:12453-12472 None:intergenic 10.0%
!!! ATACTTTAAAAACTGAATTA+TGG - tig0023923:11791-11810 None:intergenic 15.0%
!!! ATACTTTAAAAACTGAATTA+TGG - tig0023923:11791-11810 None:intergenic 15.0%
!! AATCACAAATGAATGTAAAA+GGG - tig0023923:12671-12690 None:intergenic 20.0%
!! TAATCACAAATGAATGTAAA+AGG - tig0023923:12672-12691 None:intergenic 20.0%
!! AATGTTTACTTATTCTTCAT+TGG + tig0023923:12948-12967 Msa1412520:CDS 20.0%
!!! TCAAATCATTGATTTTGTAA+CGG + tig0023923:13415-13434 Msa1412520:three_prime_UTR 20.0%
!! AATATAAGTTACAAATTCAG+TGG - tig0023923:13455-13474 None:intergenic 20.0%
!! CTGAATTTGTAACTTATATT+TGG + tig0023923:13455-13474 Msa1412520:three_prime_UTR 20.0%
!! AATCACAAATGAATGTAAAA+GGG - tig0023923:12671-12690 None:intergenic 20.0%
!! TAATCACAAATGAATGTAAA+AGG - tig0023923:12672-12691 None:intergenic 20.0%
!! AATGTTTACTTATTCTTCAT+TGG + tig0023923:12948-12967 Msa1412520:CDS 20.0%
!!! TCAAATCATTGATTTTGTAA+CGG + tig0023923:13415-13434 Msa1412520:three_prime_UTR 20.0%
!! AATATAAGTTACAAATTCAG+TGG - tig0023923:13455-13474 None:intergenic 20.0%
!! CTGAATTTGTAACTTATATT+TGG + tig0023923:13455-13474 Msa1412520:three_prime_UTR 20.0%
! AAAGCTGAAATTGATAAGAT+TGG + tig0023923:11618-11637 Msa1412520:CDS 25.0%
! AAAACTGAATTATGGTTTAC+TGG - tig0023923:11783-11802 None:intergenic 25.0%
! TTAAAGTATAGTTCCTACTA+GGG - tig0023923:11892-11911 None:intergenic 25.0%
!! TTTAAAGTATAGTTCCTACT+AGG - tig0023923:11893-11912 None:intergenic 25.0%
! TACTTTGTACACTTATCATA+TGG + tig0023923:12564-12583 Msa1412520:intron 25.0%
!!! CATCTTTTCTATTTCTTCTT+TGG - tig0023923:12883-12902 None:intergenic 25.0%
!!! TTCATTGGTCTTTTTACATA+TGG + tig0023923:12963-12982 Msa1412520:CDS 25.0%
!! CTTTTTACATATGGAATAGT+TGG + tig0023923:12972-12991 Msa1412520:CDS 25.0%
! ATTAGATGTTTCAGTTTATG+AGG + tig0023923:13171-13190 Msa1412520:three_prime_UTR 25.0%
! TTAGATGTTTCAGTTTATGA+GGG + tig0023923:13172-13191 Msa1412520:three_prime_UTR 25.0%
! AACTTAGTCACCAATATTAT+CGG - tig0023923:13285-13304 None:intergenic 25.0%
! AAAGCTGAAATTGATAAGAT+TGG + tig0023923:11618-11637 Msa1412520:CDS 25.0%
! AAAACTGAATTATGGTTTAC+TGG - tig0023923:11783-11802 None:intergenic 25.0%
! TTAAAGTATAGTTCCTACTA+GGG - tig0023923:11892-11911 None:intergenic 25.0%
!! TTTAAAGTATAGTTCCTACT+AGG - tig0023923:11893-11912 None:intergenic 25.0%
! TACTTTGTACACTTATCATA+TGG + tig0023923:12564-12583 Msa1412520:intron 25.0%
!!! CATCTTTTCTATTTCTTCTT+TGG - tig0023923:12883-12902 None:intergenic 25.0%
!!! TTCATTGGTCTTTTTACATA+TGG + tig0023923:12963-12982 Msa1412520:CDS 25.0%
!! CTTTTTACATATGGAATAGT+TGG + tig0023923:12972-12991 Msa1412520:CDS 25.0%
! ATTAGATGTTTCAGTTTATG+AGG + tig0023923:13171-13190 Msa1412520:three_prime_UTR 25.0%
! TTAGATGTTTCAGTTTATGA+GGG + tig0023923:13172-13191 Msa1412520:three_prime_UTR 25.0%
! AACTTAGTCACCAATATTAT+CGG - tig0023923:13285-13304 None:intergenic 25.0%
AAACACGAGGATAAAACTAT+GGG + tig0023923:11276-11295 Msa1412520:exon 30.0%
AGTATTATCAGGTTCATCAT+TGG - tig0023923:11466-11485 None:intergenic 30.0%
TCATTATGTTAATCCCTAGT+AGG + tig0023923:11876-11895 Msa1412520:intron 30.0%
AGATAAAATGAGAGAGAGAT+TGG + tig0023923:11934-11953 Msa1412520:intron 30.0%
ATTGGACTATAATGTTAGTC+AGG + tig0023923:11952-11971 Msa1412520:intron 30.0%
AAACTGTAGTTTGAATCCTA+GGG + tig0023923:12008-12027 Msa1412520:intron 30.0%
! TTGAGAATTAGTCTCATAGT+CGG + tig0023923:12086-12105 Msa1412520:intron 30.0%
!!! TTTGTTTTGTCAAGATGCTA+GGG - tig0023923:12207-12226 None:intergenic 30.0%
! GGACTATTCTTTAAGAACTT+AGG + tig0023923:12825-12844 Msa1412520:CDS 30.0%
TTTAAGAACTTAGGACAGAA+AGG + tig0023923:12834-12853 Msa1412520:CDS 30.0%
! GCTTTTGCTTTATCAACATT+AGG - tig0023923:12861-12880 None:intergenic 30.0%
GAAAGATGTAACAACAAATG+AGG + tig0023923:12902-12921 Msa1412520:CDS 30.0%
GTAACAACAAATGAGGAAAA+TGG + tig0023923:12909-12928 Msa1412520:CDS 30.0%
AGGAAAATGGAAGAAAAACA+AGG + tig0023923:12922-12941 Msa1412520:CDS 30.0%
!! CATCATTAAGTAGTACTGAT+TGG + tig0023923:13009-13028 Msa1412520:CDS 30.0%
AAAGATGATGAACAATGAAG+AGG + tig0023923:13113-13132 Msa1412520:exon 30.0%
! ATATATCAAGCAGCTTTTCT+TGG + tig0023923:13246-13265 Msa1412520:three_prime_UTR 30.0%
! TATATCAAGCAGCTTTTCTT+GGG + tig0023923:13247-13266 Msa1412520:three_prime_UTR 30.0%
TGAAATACAGCCGATAATAT+TGG + tig0023923:13272-13291 Msa1412520:three_prime_UTR 30.0%
AAGTTACAAATTCAGTGGTT+AGG - tig0023923:13450-13469 None:intergenic 30.0%
AAACACGAGGATAAAACTAT+GGG + tig0023923:11276-11295 Msa1412520:exon 30.0%
AGTATTATCAGGTTCATCAT+TGG - tig0023923:11466-11485 None:intergenic 30.0%
TCATTATGTTAATCCCTAGT+AGG + tig0023923:11876-11895 Msa1412520:intron 30.0%
AGATAAAATGAGAGAGAGAT+TGG + tig0023923:11934-11953 Msa1412520:intron 30.0%
ATTGGACTATAATGTTAGTC+AGG + tig0023923:11952-11971 Msa1412520:intron 30.0%
AAACTGTAGTTTGAATCCTA+GGG + tig0023923:12008-12027 Msa1412520:intron 30.0%
! TTGAGAATTAGTCTCATAGT+CGG + tig0023923:12086-12105 Msa1412520:intron 30.0%
!!! TTTGTTTTGTCAAGATGCTA+GGG - tig0023923:12207-12226 None:intergenic 30.0%
! GGACTATTCTTTAAGAACTT+AGG + tig0023923:12825-12844 Msa1412520:CDS 30.0%
TTTAAGAACTTAGGACAGAA+AGG + tig0023923:12834-12853 Msa1412520:CDS 30.0%
! GCTTTTGCTTTATCAACATT+AGG - tig0023923:12861-12880 None:intergenic 30.0%
GAAAGATGTAACAACAAATG+AGG + tig0023923:12902-12921 Msa1412520:CDS 30.0%
GTAACAACAAATGAGGAAAA+TGG + tig0023923:12909-12928 Msa1412520:CDS 30.0%
AGGAAAATGGAAGAAAAACA+AGG + tig0023923:12922-12941 Msa1412520:CDS 30.0%
!! CATCATTAAGTAGTACTGAT+TGG + tig0023923:13009-13028 Msa1412520:CDS 30.0%
AAAGATGATGAACAATGAAG+AGG + tig0023923:13113-13132 Msa1412520:exon 30.0%
! ATATATCAAGCAGCTTTTCT+TGG + tig0023923:13246-13265 Msa1412520:three_prime_UTR 30.0%
! TATATCAAGCAGCTTTTCTT+GGG + tig0023923:13247-13266 Msa1412520:three_prime_UTR 30.0%
TGAAATACAGCCGATAATAT+TGG + tig0023923:13272-13291 Msa1412520:three_prime_UTR 30.0%
AAGTTACAAATTCAGTGGTT+AGG - tig0023923:13450-13469 None:intergenic 30.0%
GAAACACGAGGATAAAACTA+TGG + tig0023923:11275-11294 Msa1412520:exon 35.0%
ATAGAAGGAAGGGTGAAATA+TGG - tig0023923:11352-11371 None:intergenic 35.0%
TAGAAGAAGGATAGAAGGAA+GGG - tig0023923:11362-11381 None:intergenic 35.0%
ATAGAAGAAGGATAGAAGGA+AGG - tig0023923:11363-11382 None:intergenic 35.0%
! GTTGATAGAAGAAGGATAGA+AGG - tig0023923:11367-11386 None:intergenic 35.0%
GACAGAAAAAGTTCGTCTTA+CGG + tig0023923:11545-11564 Msa1412520:CDS 35.0%
! AGTTCGTCTTACGGATTATT+TGG + tig0023923:11554-11573 Msa1412520:CDS 35.0%
TCTGAATACTTGACACAGTT+TGG + tig0023923:11585-11604 Msa1412520:CDS 35.0%
ATTGGTGAAGATGCTCTTAA+AGG + tig0023923:11636-11655 Msa1412520:CDS 35.0%
TGAAGATGCTCTTAAAGGAT+TGG + tig0023923:11641-11660 Msa1412520:CDS 35.0%
AGCTAACTAGAATCTATGCA+TGG - tig0023923:11730-11749 None:intergenic 35.0%
GAAACTGTAGTTTGAATCCT+AGG + tig0023923:12007-12026 Msa1412520:intron 35.0%
AACTGTAGTTTGAATCCTAG+GGG + tig0023923:12009-12028 Msa1412520:intron 35.0%
!!! CTTTGTTTTGTCAAGATGCT+AGG - tig0023923:12208-12227 None:intergenic 35.0%
!! CTCAAAGTCTCAATTTTGGT+GGG - tig0023923:12306-12325 None:intergenic 35.0%
! TCTCCTCAAAGTCTCAATTT+TGG - tig0023923:12310-12329 None:intergenic 35.0%
!! GCATAAGTACTGCTTTTAAC+AGG - tig0023923:12617-12636 None:intergenic 35.0%
GGAAAGTGAAAGCAAAGTAA+TGG + tig0023923:12767-12786 Msa1412520:CDS 35.0%
! AGCAAAGTAATGGAGATTGA+AGG + tig0023923:12777-12796 Msa1412520:CDS 35.0%
AATGGAGATTGAAGGACAAA+TGG + tig0023923:12785-12804 Msa1412520:CDS 35.0%
ATGGAAGTTGACAGAAATGA+AGG + tig0023923:12804-12823 Msa1412520:CDS 35.0%
AATTTGTAAGCACTCACTTG+GGG - tig0023923:13219-13238 None:intergenic 35.0%
CAATTTGTAAGCACTCACTT+GGG - tig0023923:13220-13239 None:intergenic 35.0%
TGCAATTCAGCAGTATAACA+TGG - tig0023923:13309-13328 None:intergenic 35.0%
TCTCATAAATGAGCACTTGA+TGG - tig0023923:13390-13409 None:intergenic 35.0%
GAAACACGAGGATAAAACTA+TGG + tig0023923:11275-11294 Msa1412520:exon 35.0%
ATAGAAGGAAGGGTGAAATA+TGG - tig0023923:11352-11371 None:intergenic 35.0%
TAGAAGAAGGATAGAAGGAA+GGG - tig0023923:11362-11381 None:intergenic 35.0%
ATAGAAGAAGGATAGAAGGA+AGG - tig0023923:11363-11382 None:intergenic 35.0%
! GTTGATAGAAGAAGGATAGA+AGG - tig0023923:11367-11386 None:intergenic 35.0%
GACAGAAAAAGTTCGTCTTA+CGG + tig0023923:11545-11564 Msa1412520:CDS 35.0%
! AGTTCGTCTTACGGATTATT+TGG + tig0023923:11554-11573 Msa1412520:CDS 35.0%
TCTGAATACTTGACACAGTT+TGG + tig0023923:11585-11604 Msa1412520:CDS 35.0%
ATTGGTGAAGATGCTCTTAA+AGG + tig0023923:11636-11655 Msa1412520:CDS 35.0%
TGAAGATGCTCTTAAAGGAT+TGG + tig0023923:11641-11660 Msa1412520:CDS 35.0%
AGCTAACTAGAATCTATGCA+TGG - tig0023923:11730-11749 None:intergenic 35.0%
GAAACTGTAGTTTGAATCCT+AGG + tig0023923:12007-12026 Msa1412520:intron 35.0%
AACTGTAGTTTGAATCCTAG+GGG + tig0023923:12009-12028 Msa1412520:intron 35.0%
!!! CTTTGTTTTGTCAAGATGCT+AGG - tig0023923:12208-12227 None:intergenic 35.0%
!! CTCAAAGTCTCAATTTTGGT+GGG - tig0023923:12306-12325 None:intergenic 35.0%
! TCTCCTCAAAGTCTCAATTT+TGG - tig0023923:12310-12329 None:intergenic 35.0%
!! GCATAAGTACTGCTTTTAAC+AGG - tig0023923:12617-12636 None:intergenic 35.0%
GGAAAGTGAAAGCAAAGTAA+TGG + tig0023923:12767-12786 Msa1412520:CDS 35.0%
! AGCAAAGTAATGGAGATTGA+AGG + tig0023923:12777-12796 Msa1412520:CDS 35.0%
AATGGAGATTGAAGGACAAA+TGG + tig0023923:12785-12804 Msa1412520:CDS 35.0%
ATGGAAGTTGACAGAAATGA+AGG + tig0023923:12804-12823 Msa1412520:CDS 35.0%
AATTTGTAAGCACTCACTTG+GGG - tig0023923:13219-13238 None:intergenic 35.0%
CAATTTGTAAGCACTCACTT+GGG - tig0023923:13220-13239 None:intergenic 35.0%
TGCAATTCAGCAGTATAACA+TGG - tig0023923:13309-13328 None:intergenic 35.0%
TCTCATAAATGAGCACTTGA+TGG - tig0023923:13390-13409 None:intergenic 35.0%
ACTTCTTCTTGTGTTGTGGT+GGG - tig0023923:11415-11434 None:intergenic 40.0%
AACTTCTTCTTGTGTTGTGG+TGG - tig0023923:11416-11435 None:intergenic 40.0%
CAGAACTTCTTCTTGTGTTG+TGG - tig0023923:11419-11438 None:intergenic 40.0%
ATCAGGTTCATCATTGGAGT+TGG - tig0023923:11460-11479 None:intergenic 40.0%
! CCAGGTTGTGAAGTATTATC+AGG - tig0023923:11477-11496 None:intergenic 40.0%
CCTGATAATACTTCACAACC+TGG + tig0023923:11474-11493 Msa1412520:CDS 40.0%
GATAATACTTCACAACCTGG+AGG + tig0023923:11477-11496 Msa1412520:CDS 40.0%
GGACTATAATGTTAGTCAGG+TGG + tig0023923:11955-11974 Msa1412520:intron 40.0%
AGTTTCTCAGATACTCCTAC+GGG - tig0023923:11993-12012 None:intergenic 40.0%
CAGTTTCTCAGATACTCCTA+CGG - tig0023923:11994-12013 None:intergenic 40.0%
GATGCTAGGGACTAATACAA+AGG - tig0023923:12194-12213 None:intergenic 40.0%
! CCTCAAAGTCTCAATTTTGG+TGG - tig0023923:12307-12326 None:intergenic 40.0%
CCACCAAAATTGAGACTTTG+AGG + tig0023923:12304-12323 Msa1412520:intron 40.0%
ACTAGACAGAGTAGAGTTTG+AGG + tig0023923:12746-12765 Msa1412520:CDS 40.0%
TGGAAGAAAGTTGCAGTTCT+TGG + tig0023923:13029-13048 Msa1412520:CDS 40.0%
AGTTCTTGGAGCTATTCTTG+TGG + tig0023923:13043-13062 Msa1412520:CDS 40.0%
CCAATTTGTAAGCACTCACT+TGG - tig0023923:13221-13240 None:intergenic 40.0%
CCAAGTGAGTGCTTACAAAT+TGG + tig0023923:13218-13237 Msa1412520:three_prime_UTR 40.0%
ACTTCTTCTTGTGTTGTGGT+GGG - tig0023923:11415-11434 None:intergenic 40.0%
AACTTCTTCTTGTGTTGTGG+TGG - tig0023923:11416-11435 None:intergenic 40.0%
CAGAACTTCTTCTTGTGTTG+TGG - tig0023923:11419-11438 None:intergenic 40.0%
ATCAGGTTCATCATTGGAGT+TGG - tig0023923:11460-11479 None:intergenic 40.0%
! CCAGGTTGTGAAGTATTATC+AGG - tig0023923:11477-11496 None:intergenic 40.0%
CCTGATAATACTTCACAACC+TGG + tig0023923:11474-11493 Msa1412520:CDS 40.0%
GATAATACTTCACAACCTGG+AGG + tig0023923:11477-11496 Msa1412520:CDS 40.0%
GGACTATAATGTTAGTCAGG+TGG + tig0023923:11955-11974 Msa1412520:intron 40.0%
AGTTTCTCAGATACTCCTAC+GGG - tig0023923:11993-12012 None:intergenic 40.0%
CAGTTTCTCAGATACTCCTA+CGG - tig0023923:11994-12013 None:intergenic 40.0%
GATGCTAGGGACTAATACAA+AGG - tig0023923:12194-12213 None:intergenic 40.0%
! CCTCAAAGTCTCAATTTTGG+TGG - tig0023923:12307-12326 None:intergenic 40.0%
CCACCAAAATTGAGACTTTG+AGG + tig0023923:12304-12323 Msa1412520:intron 40.0%
ACTAGACAGAGTAGAGTTTG+AGG + tig0023923:12746-12765 Msa1412520:CDS 40.0%
TGGAAGAAAGTTGCAGTTCT+TGG + tig0023923:13029-13048 Msa1412520:CDS 40.0%
AGTTCTTGGAGCTATTCTTG+TGG + tig0023923:13043-13062 Msa1412520:CDS 40.0%
CCAATTTGTAAGCACTCACT+TGG - tig0023923:13221-13240 None:intergenic 40.0%
CCAAGTGAGTGCTTACAAAT+TGG + tig0023923:13218-13237 Msa1412520:three_prime_UTR 40.0%
ACTATGGGAGCTGACATACA+TGG + tig0023923:11291-11310 Msa1412520:exon 45.0%
!! GTGGTGGTGTTGATAGAAGA+AGG - tig0023923:11375-11394 None:intergenic 45.0%
GTGCAGAGTAGTAAAAGTGG+TGG - tig0023923:11391-11410 None:intergenic 45.0%
TTCTTCTTGTGTTGTGGTGG+GGG - tig0023923:11413-11432 None:intergenic 45.0%
CTTCTTCTTGTGTTGTGGTG+GGG - tig0023923:11414-11433 None:intergenic 45.0%
! CAAGTTGAGCTAGTAGCTCT+TGG - tig0023923:11515-11534 None:intergenic 45.0%
GTTTCTCAGATACTCCTACG+GGG - tig0023923:11992-12011 None:intergenic 45.0%
CTTTCGTTCTCAACCTCCAT+GGG - tig0023923:12040-12059 None:intergenic 45.0%
GGTCCAAATGACTGAAGTAG+CGG + tig0023923:12107-12126 Msa1412520:intron 45.0%
GTCCAAATGACTGAAGTAGC+GGG + tig0023923:12108-12127 Msa1412520:intron 45.0%
TCCAAATGACTGAAGTAGCG+GGG + tig0023923:12109-12128 Msa1412520:intron 45.0%
GAGTGAGATGCTAGCATTTG+AGG + tig0023923:12713-12732 Msa1412520:CDS 45.0%
ACTATGGGAGCTGACATACA+TGG + tig0023923:11291-11310 Msa1412520:exon 45.0%
!! GTGGTGGTGTTGATAGAAGA+AGG - tig0023923:11375-11394 None:intergenic 45.0%
GTGCAGAGTAGTAAAAGTGG+TGG - tig0023923:11391-11410 None:intergenic 45.0%
TTCTTCTTGTGTTGTGGTGG+GGG - tig0023923:11413-11432 None:intergenic 45.0%
CTTCTTCTTGTGTTGTGGTG+GGG - tig0023923:11414-11433 None:intergenic 45.0%
! CAAGTTGAGCTAGTAGCTCT+TGG - tig0023923:11515-11534 None:intergenic 45.0%
GTTTCTCAGATACTCCTACG+GGG - tig0023923:11992-12011 None:intergenic 45.0%
CTTTCGTTCTCAACCTCCAT+GGG - tig0023923:12040-12059 None:intergenic 45.0%
GGTCCAAATGACTGAAGTAG+CGG + tig0023923:12107-12126 Msa1412520:intron 45.0%
GTCCAAATGACTGAAGTAGC+GGG + tig0023923:12108-12127 Msa1412520:intron 45.0%
TCCAAATGACTGAAGTAGCG+GGG + tig0023923:12109-12128 Msa1412520:intron 45.0%
GAGTGAGATGCTAGCATTTG+AGG + tig0023923:12713-12732 Msa1412520:CDS 45.0%
GGGGTGCAGAGTAGTAAAAG+TGG - tig0023923:11394-11413 None:intergenic 50.0%
!! TGGCTTTGAACATCACCTCC+AGG - tig0023923:11495-11514 None:intergenic 50.0%
TGGAAGCAATTTGACCCCGT+AGG + tig0023923:11975-11994 Msa1412520:intron 50.0%
AATCCTAGGGGAGTAACCCA+TGG + tig0023923:12021-12040 Msa1412520:intron 50.0%
CCTTTCGTTCTCAACCTCCA+TGG - tig0023923:12041-12060 None:intergenic 50.0%
CCATGGAGGTTGAGAACGAA+AGG + tig0023923:12038-12057 Msa1412520:intron 50.0%
TCCCCGCTACTTCAGTCATT+TGG - tig0023923:12113-12132 None:intergenic 50.0%
!! ATGCCATGGTGGACTCATTG+TGG + tig0023923:12132-12151 Msa1412520:intron 50.0%
! TGGACTCATTGTGGTGCCAA+AGG + tig0023923:12141-12160 Msa1412520:intron 50.0%
! GGTGCCAAAGGCTCTAATCA+CGG + tig0023923:12153-12172 Msa1412520:intron 50.0%
CTCACCGTGATTAGAGCCTT+TGG - tig0023923:12160-12179 None:intergenic 50.0%
GGGGTGCAGAGTAGTAAAAG+TGG - tig0023923:11394-11413 None:intergenic 50.0%
!! TGGCTTTGAACATCACCTCC+AGG - tig0023923:11495-11514 None:intergenic 50.0%
TGGAAGCAATTTGACCCCGT+AGG + tig0023923:11975-11994 Msa1412520:intron 50.0%
AATCCTAGGGGAGTAACCCA+TGG + tig0023923:12021-12040 Msa1412520:intron 50.0%
CCTTTCGTTCTCAACCTCCA+TGG - tig0023923:12041-12060 None:intergenic 50.0%
CCATGGAGGTTGAGAACGAA+AGG + tig0023923:12038-12057 Msa1412520:intron 50.0%
TCCCCGCTACTTCAGTCATT+TGG - tig0023923:12113-12132 None:intergenic 50.0%
!! ATGCCATGGTGGACTCATTG+TGG + tig0023923:12132-12151 Msa1412520:intron 50.0%
! TGGACTCATTGTGGTGCCAA+AGG + tig0023923:12141-12160 Msa1412520:intron 50.0%
! GGTGCCAAAGGCTCTAATCA+CGG + tig0023923:12153-12172 Msa1412520:intron 50.0%
CTCACCGTGATTAGAGCCTT+TGG - tig0023923:12160-12179 None:intergenic 50.0%
GCACCACAATGAGTCCACCA+TGG - tig0023923:12138-12157 None:intergenic 55.0%
GCACCACAATGAGTCCACCA+TGG - tig0023923:12138-12157 None:intergenic 55.0%
! CCTCCATGGGTTACTCCCCT+AGG - tig0023923:12027-12046 None:intergenic 60.0%
CCTAGGGGAGTAACCCATGG+AGG + tig0023923:12024-12043 Msa1412520:intron 60.0%
! CTGAAGTAGCGGGGATGCCA+TGG + tig0023923:12118-12137 Msa1412520:intron 60.0%
! AAGTAGCGGGGATGCCATGG+TGG + tig0023923:12121-12140 Msa1412520:intron 60.0%
! CCTCCATGGGTTACTCCCCT+AGG - tig0023923:12027-12046 None:intergenic 60.0%
CCTAGGGGAGTAACCCATGG+AGG + tig0023923:12024-12043 Msa1412520:intron 60.0%
! CTGAAGTAGCGGGGATGCCA+TGG + tig0023923:12118-12137 Msa1412520:intron 60.0%
! AAGTAGCGGGGATGCCATGG+TGG + tig0023923:12121-12140 Msa1412520:intron 60.0%
Chromosome Type Strat End Strand Name
tig0023923 gene 11273 13503 11273 ID=Msa1412520;Name=Msa1412520
tig0023923 mRNA 11273 13503 11273 ID=Msa1412520-mRNA-1;Parent=Msa1412520;Name=Msa1412520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=21|1|1|1|1|1|2|373|273
tig0023923 exon 11273 11680 11273 ID=Msa1412520-mRNA-1:exon:20658;Parent=Msa1412520-mRNA-1
tig0023923 exon 12696 13503 12696 ID=Msa1412520-mRNA-1:exon:20659;Parent=Msa1412520-mRNA-1
tig0023923 five_prime_UTR 11273 11293 11273 ID=Msa1412520-mRNA-1:five_prime_utr;Parent=Msa1412520-mRNA-1
tig0023923 CDS 11294 11680 11294 ID=Msa1412520-mRNA-1:cds;Parent=Msa1412520-mRNA-1
tig0023923 CDS 12696 13130 12696 ID=Msa1412520-mRNA-1:cds;Parent=Msa1412520-mRNA-1
tig0023923 three_prime_UTR 13131 13503 13131 ID=Msa1412520-mRNA-1:three_prime_utr;Parent=Msa1412520-mRNA-1
Gene Sequence

>Msa1412520

ATGGGAGCTGACATACATGGCATCACTTTAGTTGACAAGATGATTGCTCTCAAAGCCATATTTCACCCTTCCTTCTATCCTTCTTCTATCAACACCACCACTTTTACTACTCTGCACCCCCACCACAACACAAGAAGAAGTTCTGTTTTTCTCTGTCTTTGTACCAACTCCAATGATGAACCTGATAATACTTCACAACCTGGAGGTGATGTTCAAAGCCAAGAGCTACTAGCTCAACTTGCAATGCTTGAGACAGAAAAAGTTCGTCTTACGGATTATTTGGATGAAAGATCTGAATACTTGACACAGTTTGGTGAAGAAGCTAAAGCTGAAATTGATAAGATTGGTGAAGATGCTCTTAAAGGATTGGATGAAGCTAGTGATAGAATAACAGCAAAAATAGAGAGTGAGATGCTAGCATTTGAGGAATCAAATGAACTAGACAGAGTAGAGTTTGAGGAAAGTGAAAGCAAAGTAATGGAGATTGAAGGACAAATGGAAGTTGACAGAAATGAAGGACTATTCTTTAAGAACTTAGGACAGAAAGGACCTAATGTTGATAAAGCAAAAGCCAAAGAAGAAATAGAAAAGATGAAAGATGTAACAACAAATGAGGAAAATGGAAGAAAAACAAGGAAAAATGTTTACTTATTCTTCATTGGTCTTTTTACATATGGAATAGTTGGTTCTATTAATGTCTCATCATTAAGTAGTACTGATTGGAAGAAAGTTGCAGTTCTTGGAGCTATTCTTGTGGCTTTGTTTTCTCAGTTCATTTATGAACAAAATAAAGACAATAATCAGAAAGATGATGAACAATGA

Protein sequence

>Msa1412520

MGADIHGITLVDKMIALKAIFHPSFYPSSINTTTFTTLHPHHNTRRSSVFLCLCTNSNDEPDNTSQPGGDVQSQELLAQLAMLETEKVRLTDYLDERSEYLTQFGEEAKAEIDKIGEDALKGLDEASDRITAKIESEMLAFEESNELDRVEFEESESKVMEIEGQMEVDRNEGLFFKNLGQKGPNVDKAKAKEEIEKMKDVTTNEENGRKTRKNVYLFFIGLFTYGIVGSINVSSLSSTDWKKVAVLGAILVALFSQFIYEQNKDNNQKDDEQ*