AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331350 MtrunA17_Chr4g0056191 99.559 227 1 0 1 227 1 227 2.18e-167 460
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331350 AT3G13200.1 73.913 230 57 1 1 227 1 230 5.46e-105 303

Find 65 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAATTGCTTTCACAAAT+AGG 0.209078 8_4:-50873301 None:intergenic
TTTAGATCCAAATCATAAAT+TGG 0.236784 8_4:-50873239 None:intergenic
TATAATTGCTTTCACAAATA+GGG 0.271523 8_4:-50873300 None:intergenic
ACGTTGTCCAATTTATGATT+TGG 0.308262 8_4:+50873232 Msa1331350:three_prime_UTR
GCCTTGTTCGTTTCCACCTT+TGG 0.329362 8_4:-50869819 None:intergenic
AATGTAATATATTGTGTTGA+TGG 0.340079 8_4:+50873168 Msa1331350:three_prime_UTR
TGTCAGAAACCTGAGTTGTT+TGG 0.354566 8_4:+50873114 Msa1331350:three_prime_UTR
TATAAACCATAAGTTTCTTC+AGG 0.365747 8_4:-50873139 None:intergenic
GGATGACACTGAAGCTTTGC+TGG 0.370195 8_4:+50871823 Msa1331350:CDS
TTGGAGCCTGAAGAAACTTA+TGG 0.386666 8_4:+50873133 Msa1331350:three_prime_UTR
GATGAATCGCTTTGCGAGCT+TGG 0.402778 8_4:-50873027 None:intergenic
CATCTTTCAGTGTCAAAAGA+AGG 0.407995 8_4:+50872433 Msa1331350:CDS
TCCTTCCTTTCTTCAATCAC+CGG 0.423596 8_4:+50869721 Msa1331350:five_prime_UTR
TCCATGCTTTGACAGATGAC+AGG 0.425910 8_4:+50871065 Msa1331350:intron
CCTTTGGCCGGTGCCCATGT+TGG 0.438499 8_4:-50869803 None:intergenic
TTGGGTACTTAGCAGGTTAG+AGG 0.440145 8_4:+50873339 Msa1331350:three_prime_UTR
TGCGAGCTTGGTTTCTCCAC+GGG 0.448028 8_4:-50873015 None:intergenic
CTTACTTCATGTATTTGTGC+AGG 0.449310 8_4:-50873085 None:intergenic
AATGTACTTGGGTACTTAGC+AGG 0.450760 8_4:+50873332 Msa1331350:three_prime_UTR
TGTTCGTTTCCACCTTTGGC+CGG 0.457672 8_4:-50869815 None:intergenic
ATGTCGGGTTATTGATCAAA+GGG 0.461011 8_4:-50872413 None:intergenic
TTGACAGATGACAGGGATCA+TGG 0.467290 8_4:+50871073 Msa1331350:intron
ATTTGTGCAGGAATTTCCTA+TGG 0.474919 8_4:-50873073 None:intergenic
AGAGGAAGATCTTAAAGTAA+AGG 0.493826 8_4:+50872368 Msa1331350:CDS
GATTCATCAATGACACCATC+AGG 0.497137 8_4:+50873042 Msa1331350:CDS
CTTCAGGCTCCAAACAACTC+AGG 0.508450 8_4:-50873123 None:intergenic
TTGCGAGCTTGGTTTCTCCA+CGG 0.514076 8_4:-50873016 None:intergenic
TTGAACAAATAAAGAAGGAA+AGG 0.524193 8_4:+50871852 Msa1331350:CDS
CGCTAGACCAACATGGGCAC+CGG 0.524224 8_4:+50869796 Msa1331350:CDS
TGAACAAATAAAGAAGGAAA+GGG 0.539554 8_4:+50871853 Msa1331350:CDS
TGAGCTTGAACAAATAAAGA+AGG 0.544665 8_4:+50871847 Msa1331350:CDS
CCATGCTTTGACAGATGACA+GGG 0.549331 8_4:+50871066 Msa1331350:intron
AATAAAGAAGGAAAGGGCAC+AGG 0.549972 8_4:+50871859 Msa1331350:CDS
GATGACAGGGATCATGGAAG+GGG 0.552181 8_4:+50871079 Msa1331350:intron
GAAAGACGGGCAGGATACAC+AGG 0.556936 8_4:+50870829 Msa1331350:CDS
CGACCGCCGCTAGACCAACA+TGG 0.559680 8_4:+50869789 Msa1331350:CDS
TCCGGTGATTGAAGAAAGGA+AGG 0.560695 8_4:-50869722 None:intergenic
GATGTCGGGTTATTGATCAA+AGG 0.561231 8_4:-50872414 None:intergenic
ACATGGGCACCGGCCAAAGG+TGG 0.565377 8_4:+50869806 Msa1331350:CDS
GACAGGGATCATGGAAGGGG+CGG 0.566656 8_4:+50871082 Msa1331350:CDS
GGAAGATCTTAAAGTAAAGG+AGG 0.567127 8_4:+50872371 Msa1331350:CDS
CGCACACCACTCTCAAACCT+AGG 0.567486 8_4:+50869894 Msa1331350:CDS
CAGATGACAGGGATCATGGA+AGG 0.571029 8_4:+50871077 Msa1331350:intron
CACAGGATGAGTTAAAGAGA+AGG 0.579428 8_4:+50870846 Msa1331350:CDS
GCCAAAGGTGGAAACGAACA+AGG 0.588363 8_4:+50869818 Msa1331350:CDS
CCATCAGGAATGATTTCCAT+AGG 0.597909 8_4:+50873057 Msa1331350:CDS
AGATGACAGGGATCATGGAA+GGG 0.602143 8_4:+50871078 Msa1331350:intron
CCTATGGAAATCATTCCTGA+TGG 0.606526 8_4:-50873057 None:intergenic
CAGTGATGACGACGACGATG+AGG 0.607786 8_4:+50871802 Msa1331350:intron
GTATAGGTGGGATGATGATG+TGG 0.611321 8_4:+50872977 Msa1331350:intron
GACCGCCGCTAGACCAACAT+GGG 0.618179 8_4:+50869790 Msa1331350:CDS
CGGTGCCCATGTTGGTCTAG+CGG 0.624635 8_4:-50869795 None:intergenic
GCAGGAACAACAACAACAAG+AGG 0.626881 8_4:+50872350 Msa1331350:intron
GGCACAGGAAAAGCTGCGCA+AGG 0.629250 8_4:+50871874 Msa1331350:CDS
AACTTGATGAACGTGAAAGG+AGG 0.632430 8_4:+50870882 Msa1331350:CDS
AAGTCAACAGTGATGATGAA+AGG 0.633175 8_4:+50871332 Msa1331350:CDS
ATGAACTTGATGAACGTGAA+AGG 0.638541 8_4:+50870879 Msa1331350:CDS
CGGCGGTCGTCATCGGATCG+AGG 0.639598 8_4:-50869775 None:intergenic
CAATCACCGGAAAACAAAGT+CGG 0.651013 8_4:+50869734 Msa1331350:five_prime_UTR
AAGGAGGCAGAGCTTATGCG+TGG 0.661072 8_4:+50872387 Msa1331350:CDS
AACCTACCTAGGTTTGAGAG+TGG 0.662167 8_4:-50869900 None:intergenic
ACTTGGTTGGAACACACAAG+TGG 0.664795 8_4:-50873383 None:intergenic
TCATCTGCATCAACACTGCG+TGG 0.670152 8_4:-50871298 None:intergenic
GTTCATCAAGTTCATCACGT+AGG 0.710689 8_4:-50870871 None:intergenic
AAAGGTGGAAACGAACAAGG+CGG 0.806134 8_4:+50869821 Msa1331350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAATTTACATTTTAAATAA+GGG - chr8_4:50872324-50872343 None:intergenic 10.0%
!!! CATTTTTTTAAAAATTTGTT+TGG + chr8_4:50872955-50872974 Msa1331350:intron 10.0%
!! ATCAAAATCAACAAAAAATT+GGG - chr8_4:50869932-50869951 None:intergenic 15.0%
!! AATCAAAATCAACAAAAAAT+TGG - chr8_4:50869933-50869952 None:intergenic 15.0%
!! TAATTCAAATCAAATTTGAA+GGG - chr8_4:50870366-50870385 None:intergenic 15.0%
!! TCAAAAAATAAATCGTATAA+TGG + chr8_4:50870914-50870933 Msa1331350:CDS 15.0%
!!! ATAACGTTTTTTTTTTTAAG+AGG - chr8_4:50871575-50871594 None:intergenic 15.0%
!!! GACAATTTACATTTTAAATA+AGG - chr8_4:50872325-50872344 None:intergenic 15.0%
!! TAATTTGAATCTTGATATTT+AGG + chr8_4:50872688-50872707 Msa1331350:intron 15.0%
!!! TTTAAAAATTTGTTTGGTAT+AGG + chr8_4:50872961-50872980 Msa1331350:intron 15.0%
!!! ACACAATATATTACATTTTA+AGG - chr8_4:50873165-50873184 None:intergenic 15.0%
!! ATAAAAATTACAAATGTACT+TGG + chr8_4:50873320-50873339 Msa1331350:three_prime_UTR 15.0%
!! TAAAAATTACAAATGTACTT+GGG + chr8_4:50873321-50873340 Msa1331350:three_prime_UTR 15.0%
!! TCAAAATCAACAAAAAATTG+GGG - chr8_4:50869931-50869950 None:intergenic 20.0%
!! TATGGGTAATTAAAATTCAT+TGG + chr8_4:50870057-50870076 Msa1331350:intron 20.0%
!!! TTGATAAGTTAGTTTTTTCA+TGG + chr8_4:50870137-50870156 Msa1331350:intron 20.0%
!!! TGATAAGTTAGTTTTTTCAT+GGG + chr8_4:50870138-50870157 Msa1331350:intron 20.0%
!! AATTTCTCAATGTTATTGAT+AGG + chr8_4:50870161-50870180 Msa1331350:intron 20.0%
!! AATTCAAATCAAATTTGAAG+GGG - chr8_4:50870365-50870384 None:intergenic 20.0%
!! CTAATTCAAATCAAATTTGA+AGG - chr8_4:50870367-50870386 None:intergenic 20.0%
!!! CTTCAAATTTGATTTGAATT+AGG + chr8_4:50870365-50870384 Msa1331350:intron 20.0%
!! ACATTAAGTGATATAATTCA+TGG - chr8_4:50870475-50870494 None:intergenic 20.0%
!! ATGTAAAAAACATGATAACA+TGG - chr8_4:50870787-50870806 None:intergenic 20.0%
!!! TAATACCTTCTAAAAATAGA+TGG - chr8_4:50871108-50871127 None:intergenic 20.0%
!! GACTGAATATAAATATATCA+TGG - chr8_4:50871216-50871235 None:intergenic 20.0%
!! TTTATATGCATGTATCATTT+AGG + chr8_4:50871399-50871418 Msa1331350:intron 20.0%
!! TGCTACTATTTACAAAAATA+AGG - chr8_4:50871757-50871776 None:intergenic 20.0%
!!! AATTAGATAGTTTTTGTTGA+AGG + chr8_4:50872142-50872161 Msa1331350:intron 20.0%
!!! ATTAGATAGTTTTTGTTGAA+GGG + chr8_4:50872143-50872162 Msa1331350:intron 20.0%
!!! ATCTATCTTTTACAGTAAAT+AGG + chr8_4:50872755-50872774 Msa1331350:intron 20.0%
!! AATGTAATATATTGTGTTGA+TGG + chr8_4:50873168-50873187 Msa1331350:three_prime_UTR 20.0%
!! TTTAGATCCAAATCATAAAT+TGG - chr8_4:50873242-50873261 None:intergenic 20.0%
!! TATAATTGCTTTCACAAATA+GGG - chr8_4:50873303-50873322 None:intergenic 20.0%
!! TTATAATTGCTTTCACAAAT+AGG - chr8_4:50873304-50873323 None:intergenic 20.0%
!!! ATCTCTTGAAGAGTATTTTT+GGG - chr8_4:50869867-50869886 None:intergenic 25.0%
!!! TATCTCTTGAAGAGTATTTT+TGG - chr8_4:50869868-50869887 None:intergenic 25.0%
! AAAATCAACAAAAAATTGGG+GGG - chr8_4:50869929-50869948 None:intergenic 25.0%
! CAAAATCAACAAAAAATTGG+GGG - chr8_4:50869930-50869949 None:intergenic 25.0%
! CATGGTATTACATAGATAAA+AGG - chr8_4:50869988-50870007 None:intergenic 25.0%
! TCGAATTTATTCGTGAAATT+AGG + chr8_4:50870014-50870033 Msa1331350:intron 25.0%
!! GTTAAGTTAATTTGATCTTG+AGG + chr8_4:50870094-50870113 Msa1331350:intron 25.0%
! GTTACTGTAATCTGATAATA+CGG + chr8_4:50870226-50870245 Msa1331350:intron 25.0%
! CTCGATAAAATGATAACATT+TGG - chr8_4:50870296-50870315 None:intergenic 25.0%
! ATTCAAATCAAATTTGAAGG+GGG - chr8_4:50870364-50870383 None:intergenic 25.0%
! CTACTAAGTGATATAATTTG+GGG - chr8_4:50870443-50870462 None:intergenic 25.0%
! GCTACTAAGTGATATAATTT+GGG - chr8_4:50870444-50870463 None:intergenic 25.0%
! TGCTACTAAGTGATATAATT+TGG - chr8_4:50870445-50870464 None:intergenic 25.0%
!!! AACCATTTTAGTCATTGAAA+TGG + chr8_4:50870677-50870696 Msa1331350:intron 25.0%
! AACCATTTCAATGACTAAAA+TGG - chr8_4:50870682-50870701 None:intergenic 25.0%
! CTTAATCATTTAAAAGAGAG+CGG - chr8_4:50870731-50870750 None:intergenic 25.0%
!! GTTGCATTTATACCTTTTAT+AGG + chr8_4:50870807-50870826 Msa1331350:intron 25.0%
!! TATACCTTTTATAGGAAAGA+CGG + chr8_4:50870815-50870834 Msa1331350:intron 25.0%
!!! ATGATGAAAGGTTGATAATT+TGG + chr8_4:50871344-50871363 Msa1331350:intron 25.0%
! AATAAAATAACAACCCTTGA+TGG - chr8_4:50871435-50871454 None:intergenic 25.0%
!!! AATATGCATGCTATTTCTAT+TGG + chr8_4:50871497-50871516 Msa1331350:intron 25.0%
!! TTAAGCATGTCTTCTTTTAA+GGG - chr8_4:50871619-50871638 None:intergenic 25.0%
!! ATTAAGCATGTCTTCTTTTA+AGG - chr8_4:50871620-50871639 None:intergenic 25.0%
! TTGAACAAATAAAGAAGGAA+AGG + chr8_4:50871852-50871871 Msa1331350:CDS 25.0%
! TGAACAAATAAAGAAGGAAA+GGG + chr8_4:50871853-50871872 Msa1331350:CDS 25.0%
! AAGCTAATTAGAATGTACAT+CGG + chr8_4:50872041-50872060 Msa1331350:intron 25.0%
!! TTAGATAGTTTTTGTTGAAG+GGG + chr8_4:50872144-50872163 Msa1331350:intron 25.0%
! ACAAGAATTGAAGAATAGAA+TGG - chr8_4:50872205-50872224 None:intergenic 25.0%
! ATTCTATTCTTCAATTCTTG+TGG + chr8_4:50872204-50872223 Msa1331350:intron 25.0%
! TTCTATTCTTCAATTCTTGT+GGG + chr8_4:50872205-50872224 Msa1331350:intron 25.0%
!! AAGGTATTTGTTACTAAGAT+AGG - chr8_4:50872239-50872258 None:intergenic 25.0%
!! TTCAGTTAAATAAGTCCTTT+TGG - chr8_4:50872494-50872513 None:intergenic 25.0%
! AGAAAAATGGCAAACTATTA+GGG - chr8_4:50872518-50872537 None:intergenic 25.0%
! AAGAAAAATGGCAAACTATT+AGG - chr8_4:50872519-50872538 None:intergenic 25.0%
!!! ATCATTGACTTTTCAATCAA+CGG - chr8_4:50872587-50872606 None:intergenic 25.0%
!!! ATTATTGATTTTCCAATCAG+TGG + chr8_4:50872662-50872681 Msa1331350:intron 25.0%
! TTCAAATTATAACCACTGAT+TGG - chr8_4:50872677-50872696 None:intergenic 25.0%
! TTTGAATCTTGATATTTAGG+TGG + chr8_4:50872691-50872710 Msa1331350:intron 25.0%
!!! TATTTTTCAAGCGTTATTTG+TGG + chr8_4:50872791-50872810 Msa1331350:intron 25.0%
!!! TGGAAGTATTAATATGCAAA+TGG + chr8_4:50872850-50872869 Msa1331350:intron 25.0%
!!! ACTTAAAACTTTAAAGTGGT+TGG - chr8_4:50872888-50872907 None:intergenic 25.0%
!! AGTCACTTAAAACTTTAAAG+TGG - chr8_4:50872892-50872911 None:intergenic 25.0%
!! AAAAATTTGTTTGGTATAGG+TGG + chr8_4:50872964-50872983 Msa1331350:intron 25.0%
!! AAAATTTGTTTGGTATAGGT+GGG + chr8_4:50872965-50872984 Msa1331350:intron 25.0%
! TATAAACCATAAGTTTCTTC+AGG - chr8_4:50873142-50873161 None:intergenic 25.0%
GTGATGTATTGTCATATAGT+AGG + chr8_4:50870183-50870202 Msa1331350:intron 30.0%
CTTATTGTAAACCTGTACTT+AGG + chr8_4:50870260-50870279 Msa1331350:intron 30.0%
TAAACCTGTACTTAGGTAAT+TGG + chr8_4:50870267-50870286 Msa1331350:intron 30.0%
!! CTAGTTTTTACAAGAACAGA+AGG + chr8_4:50870499-50870518 Msa1331350:intron 30.0%
! ATACCTTTTATAGGAAAGAC+GGG + chr8_4:50870816-50870835 Msa1331350:intron 30.0%
AAAATGAAAACTTGTCTCAC+AGG - chr8_4:50871012-50871031 None:intergenic 30.0%
TCCAATTACTATCCAAGAAA+AGG + chr8_4:50871177-50871196 Msa1331350:intron 30.0%
! TCCTTTTCTTGGATAGTAAT+TGG - chr8_4:50871181-50871200 None:intergenic 30.0%
! TTCTTTTCTTCTCCTTTTCT+TGG - chr8_4:50871192-50871211 None:intergenic 30.0%
TGATGAGTCTTTATCTTAAC+AGG + chr8_4:50871244-50871263 Msa1331350:intron 30.0%
!!! TTTTTTTTAAGAGGACCACA+AGG - chr8_4:50871566-50871585 None:intergenic 30.0%
AAAAAAAACGTTATCACACG+AGG + chr8_4:50871581-50871600 Msa1331350:intron 30.0%
AAAAAAACGTTATCACACGA+GGG + chr8_4:50871582-50871601 Msa1331350:intron 30.0%
! TAAGCATGTCTTCTTTTAAG+GGG - chr8_4:50871618-50871637 None:intergenic 30.0%
TGCATTTAAGTAATCTTCGT+CGG + chr8_4:50871679-50871698 Msa1331350:intron 30.0%
TGAGCTTGAACAAATAAAGA+AGG + chr8_4:50871847-50871866 Msa1331350:CDS 30.0%
AGAGTGGTTAGGAATTTATA+AGG + chr8_4:50872076-50872095 Msa1331350:intron 30.0%
GAGTGGTTAGGAATTTATAA+GGG + chr8_4:50872077-50872096 Msa1331350:intron 30.0%
! TCAGATAAATAGAGTACTTG+AGG + chr8_4:50872107-50872126 Msa1331350:intron 30.0%
! CAGATAAATAGAGTACTTGA+GGG + chr8_4:50872108-50872127 Msa1331350:intron 30.0%
ACAAAGAGAATTCTCCTAAA+AGG - chr8_4:50872174-50872193 None:intergenic 30.0%
ACAACTAATTAGCATGCAAA+AGG - chr8_4:50872258-50872277 None:intergenic 30.0%
AATGTAAATTGTCTTTGTGC+AGG + chr8_4:50872332-50872351 Msa1331350:intron 30.0%
AGAGGAAGATCTTAAAGTAA+AGG + chr8_4:50872368-50872387 Msa1331350:CDS 30.0%
!!! TGCCATTTTTCTTTAAAGTG+AGG + chr8_4:50872526-50872545 Msa1331350:intron 30.0%
!!! GCCATTTTTCTTTAAAGTGA+GGG + chr8_4:50872527-50872546 Msa1331350:intron 30.0%
! TCCCTCACTTTAAAGAAAAA+TGG - chr8_4:50872531-50872550 None:intergenic 30.0%
ACGTTGTCCAATTTATGATT+TGG + chr8_4:50873232-50873251 Msa1331350:three_prime_UTR 30.0%
!!! CTTGAAGAGTATTTTTGGGA+AGG - chr8_4:50869863-50869882 None:intergenic 35.0%
GAATAAATTCGAATCGTGCA+TGG - chr8_4:50870006-50870025 None:intergenic 35.0%
TGTGCTTGCTTATCTTGTTA+TGG + chr8_4:50870039-50870058 Msa1331350:intron 35.0%
! GTGCTTGCTTATCTTGTTAT+GGG + chr8_4:50870040-50870059 Msa1331350:intron 35.0%
GTATCCAATTACCTAAGTAC+AGG - chr8_4:50870274-50870293 None:intergenic 35.0%
AACAATTTCAGGGAGCAAAT+CGG - chr8_4:50870326-50870345 None:intergenic 35.0%
ATTTGCTCCCTGAAATTGTT+GGG + chr8_4:50870326-50870345 Msa1331350:intron 35.0%
ACCCAATGTCATTCGAAATA+AGG + chr8_4:50870530-50870549 Msa1331350:intron 35.0%
! CCCTTATTTCGAATGACATT+GGG - chr8_4:50870534-50870553 None:intergenic 35.0%
CCCAATGTCATTCGAAATAA+GGG + chr8_4:50870531-50870550 Msa1331350:intron 35.0%
! ACCCTTATTTCGAATGACAT+TGG - chr8_4:50870535-50870554 None:intergenic 35.0%
TGTTTACCCTTTGCAATTGA+GGG - chr8_4:50870658-50870677 None:intergenic 35.0%
TTGTTTACCCTTTGCAATTG+AGG - chr8_4:50870659-50870678 None:intergenic 35.0%
ATCATTTAAAAGAGAGCGGA+GGG - chr8_4:50870727-50870746 None:intergenic 35.0%
AATCATTTAAAAGAGAGCGG+AGG - chr8_4:50870728-50870747 None:intergenic 35.0%
ATGAACTTGATGAACGTGAA+AGG + chr8_4:50870879-50870898 Msa1331350:CDS 35.0%
! AAGTCAACAGTGATGATGAA+AGG + chr8_4:50871332-50871351 Msa1331350:CDS 35.0%
TAGGATTTGTAGAACCATCA+AGG + chr8_4:50871418-50871437 Msa1331350:intron 35.0%
AGGATTTGTAGAACCATCAA+GGG + chr8_4:50871419-50871438 Msa1331350:intron 35.0%
TGTGAATAGTTAGAGTGGTT+AGG + chr8_4:50872065-50872084 Msa1331350:intron 35.0%
GGAAGATCTTAAAGTAAAGG+AGG + chr8_4:50872371-50872390 Msa1331350:CDS 35.0%
ATGTCGGGTTATTGATCAAA+GGG - chr8_4:50872416-50872435 None:intergenic 35.0%
! TTTTGACACTGAAAGATGTC+GGG - chr8_4:50872431-50872450 None:intergenic 35.0%
! CTTTTGACACTGAAAGATGT+CGG - chr8_4:50872432-50872451 None:intergenic 35.0%
CATCTTTCAGTGTCAAAAGA+AGG + chr8_4:50872433-50872452 Msa1331350:CDS 35.0%
ATATGCAAATGGTCCATAAC+TGG + chr8_4:50872861-50872880 Msa1331350:intron 35.0%
AGATCATGACAGCAGATTAA+TGG - chr8_4:50872935-50872954 None:intergenic 35.0%
ATTTGTGCAGGAATTTCCTA+TGG - chr8_4:50873076-50873095 None:intergenic 35.0%
CTTACTTCATGTATTTGTGC+AGG - chr8_4:50873088-50873107 None:intergenic 35.0%
TCCTTCCTTTCTTCAATCAC+CGG + chr8_4:50869721-50869740 Msa1331350:five_prime_UTR 40.0%
! GTTTTCCGGTGATTGAAGAA+AGG - chr8_4:50869729-50869748 None:intergenic 40.0%
CAATCACCGGAAAACAAAGT+CGG + chr8_4:50869734-50869753 Msa1331350:five_prime_UTR 40.0%
! GATTTGCTCCCTGAAATTGT+TGG + chr8_4:50870325-50870344 Msa1331350:intron 40.0%
TTTGCTCCCTGAAATTGTTG+GGG + chr8_4:50870327-50870346 Msa1331350:intron 40.0%
TCGAATGACATTGGGTAACT+TGG - chr8_4:50870526-50870545 None:intergenic 40.0%
GCCTATCTGCAAATTTCAAG+CGG + chr8_4:50870563-50870582 Msa1331350:intron 40.0%
CCTATCTGCAAATTTCAAGC+GGG + chr8_4:50870564-50870583 Msa1331350:intron 40.0%
TTTACCCTTTGCAATTGAGG+GGG - chr8_4:50870656-50870675 None:intergenic 40.0%
GTTTACCCTTTGCAATTGAG+GGG - chr8_4:50870657-50870676 None:intergenic 40.0%
CACAGGATGAGTTAAAGAGA+AGG + chr8_4:50870846-50870865 Msa1331350:CDS 40.0%
GTTCATCAAGTTCATCACGT+AGG - chr8_4:50870874-50870893 None:intergenic 40.0%
AACTTGATGAACGTGAAAGG+AGG + chr8_4:50870882-50870901 Msa1331350:CDS 40.0%
GGATTTACTCTTCAACCTTG+TGG + chr8_4:50871548-50871567 Msa1331350:intron 40.0%
TAAATGCATCCAGAGATGCT+AGG - chr8_4:50871667-50871686 None:intergenic 40.0%
! AATAAAGAAGGAAAGGGCAC+AGG + chr8_4:50871859-50871878 Msa1331350:CDS 40.0%
TGCCATTGAACCTCTTTAGA+TGG + chr8_4:50871927-50871946 Msa1331350:intron 40.0%
GCCATTGAACCTCTTTAGAT+GGG + chr8_4:50871928-50871947 Msa1331350:intron 40.0%
TCCCATCTAAAGAGGTTCAA+TGG - chr8_4:50871932-50871951 None:intergenic 40.0%
GTTCAATGTCCCATCTAAAG+AGG - chr8_4:50871940-50871959 None:intergenic 40.0%
TAGATGGGACATTGAACTTG+TGG + chr8_4:50871943-50871962 Msa1331350:intron 40.0%
AACACCTCTCTTAGGATAGA+AGG + chr8_4:50871970-50871989 Msa1331350:intron 40.0%
TCGGTTGTGAATAGTTAGAG+TGG + chr8_4:50872060-50872079 Msa1331350:intron 40.0%
! GTTGAAGGGGAAATCCTTTT+AGG + chr8_4:50872157-50872176 Msa1331350:intron 40.0%
GATGTCGGGTTATTGATCAA+AGG - chr8_4:50872417-50872436 None:intergenic 40.0%
GAACTGCTCACTTAACCAAA+AGG + chr8_4:50872476-50872495 Msa1331350:intron 40.0%
AGTGAGGGAGTCAATTCATT+CGG + chr8_4:50872542-50872561 Msa1331350:intron 40.0%
ACAGTAGTGCAATGGTCAAA+TGG - chr8_4:50872722-50872741 None:intergenic 40.0%
TGCATACAACAGTAGTGCAA+TGG - chr8_4:50872730-50872749 None:intergenic 40.0%
TTCAAGCGTTATTTGTGGTG+TGG + chr8_4:50872796-50872815 Msa1331350:intron 40.0%
! TAAAGTGGTTGGTCCAGTTA+TGG - chr8_4:50872877-50872896 None:intergenic 40.0%
GATTCATCAATGACACCATC+AGG + chr8_4:50873042-50873061 Msa1331350:CDS 40.0%
CCTATGGAAATCATTCCTGA+TGG - chr8_4:50873060-50873079 None:intergenic 40.0%
CCATCAGGAATGATTTCCAT+AGG + chr8_4:50873057-50873076 Msa1331350:CDS 40.0%
TGTCAGAAACCTGAGTTGTT+TGG + chr8_4:50873114-50873133 Msa1331350:three_prime_UTR 40.0%
TTGGAGCCTGAAGAAACTTA+TGG + chr8_4:50873133-50873152 Msa1331350:three_prime_UTR 40.0%
AATGTACTTGGGTACTTAGC+AGG + chr8_4:50873332-50873351 Msa1331350:three_prime_UTR 40.0%
TCCGGTGATTGAAGAAAGGA+AGG - chr8_4:50869725-50869744 None:intergenic 45.0%
!!! CTGTCACCGACTTTGTTTTC+CGG - chr8_4:50869743-50869762 None:intergenic 45.0%
AAAGGTGGAAACGAACAAGG+CGG + chr8_4:50869821-50869840 Msa1331350:CDS 45.0%
! CAAGGCGGTACTCGAATTTT+CGG + chr8_4:50869836-50869855 Msa1331350:CDS 45.0%
AACCTACCTAGGTTTGAGAG+TGG - chr8_4:50869903-50869922 None:intergenic 45.0%
CCCGCTTGAAATTTGCAGAT+AGG - chr8_4:50870567-50870586 None:intergenic 45.0%
TGCTTGACCCTTGCAATTTC+AGG + chr8_4:50870591-50870610 Msa1331350:intron 45.0%
TTGACCCTTGCAATTTCAGG+TGG + chr8_4:50870594-50870613 Msa1331350:intron 45.0%
! TGACCCTTGCAATTTCAGGT+GGG + chr8_4:50870595-50870614 Msa1331350:intron 45.0%
TTCCCCACCTGAAATTGCAA+GGG - chr8_4:50870601-50870620 None:intergenic 45.0%
ATTCCCCACCTGAAATTGCA+AGG - chr8_4:50870602-50870621 None:intergenic 45.0%
! TGCAATTTCAGGTGGGGAAT+TGG + chr8_4:50870602-50870621 Msa1331350:intron 45.0%
TTACCCTTTGCAATTGAGGG+GGG - chr8_4:50870655-50870674 None:intergenic 45.0%
CTGCCCGTCTTTCCTATAAA+AGG - chr8_4:50870822-50870841 None:intergenic 45.0%
! CTTTTATAGGAAAGACGGGC+AGG + chr8_4:50870820-50870839 Msa1331350:intron 45.0%
TCCATGCTTTGACAGATGAC+AGG + chr8_4:50871065-50871084 Msa1331350:intron 45.0%
CCATGCTTTGACAGATGACA+GGG + chr8_4:50871066-50871085 Msa1331350:intron 45.0%
TTGACAGATGACAGGGATCA+TGG + chr8_4:50871073-50871092 Msa1331350:intron 45.0%
AGATGACAGGGATCATGGAA+GGG + chr8_4:50871078-50871097 Msa1331350:intron 45.0%
!!! GGCGGCCATCTATTTTTAGA+AGG + chr8_4:50871100-50871119 Msa1331350:CDS 45.0%
TCTATTGGCCAGTTTCCCAT+AGG + chr8_4:50871512-50871531 Msa1331350:intron 45.0%
CCAAATGACCTATGGGAAAC+TGG - chr8_4:50871523-50871542 None:intergenic 45.0%
CCAGTTTCCCATAGGTCATT+TGG + chr8_4:50871520-50871539 Msa1331350:intron 45.0%
CCTGCAACCAAATGACCTAT+GGG - chr8_4:50871530-50871549 None:intergenic 45.0%
TCCTGCAACCAAATGACCTA+TGG - chr8_4:50871531-50871550 None:intergenic 45.0%
! TTTTGTGAGCCTAGCATCTC+TGG + chr8_4:50871655-50871674 Msa1331350:intron 45.0%
ACCTCTCTTAGGATAGAAGG+AGG + chr8_4:50871973-50871992 Msa1331350:intron 45.0%
TCCTCCTTCTATCCTAAGAG+AGG - chr8_4:50871977-50871996 None:intergenic 45.0%
GCAGGAACAACAACAACAAG+AGG + chr8_4:50872350-50872369 Msa1331350:intron 45.0%
GTAGTGCAATGGTCAAATGG+CGG - chr8_4:50872719-50872738 None:intergenic 45.0%
CTCGAACAGTAGTGCACAAT+TGG + chr8_4:50872830-50872849 Msa1331350:intron 45.0%
! GTATAGGTGGGATGATGATG+TGG + chr8_4:50872977-50872996 Msa1331350:intron 45.0%
GTGTTCAAAAATCAAGCCCG+TGG + chr8_4:50872999-50873018 Msa1331350:CDS 45.0%
TTGGGTACTTAGCAGGTTAG+AGG + chr8_4:50873339-50873358 Msa1331350:three_prime_UTR 45.0%
TGTTCGTTTCCACCTTTGGC+CGG - chr8_4:50869818-50869837 None:intergenic 50.0%
GCCAAAGGTGGAAACGAACA+AGG + chr8_4:50869818-50869837 Msa1331350:CDS 50.0%
! GCCTTGTTCGTTTCCACCTT+TGG - chr8_4:50869822-50869841 None:intergenic 50.0%
CACCACTCTCAAACCTAGGT+AGG + chr8_4:50869898-50869917 Msa1331350:intron 50.0%
TTGGGGGGAAAAACCTACCT+AGG - chr8_4:50869914-50869933 None:intergenic 50.0%
CTCCCTGAAATTGTTGGGGT+CGG + chr8_4:50870331-50870350 Msa1331350:intron 50.0%
TCCCTGAAATTGTTGGGGTC+GGG + chr8_4:50870332-50870351 Msa1331350:intron 50.0%
! GACCCTTGCAATTTCAGGTG+GGG + chr8_4:50870596-50870615 Msa1331350:intron 50.0%
GAGAGCGGAGGGTTAGAAAA+GGG - chr8_4:50870716-50870735 None:intergenic 50.0%
AGAGAGCGGAGGGTTAGAAA+AGG - chr8_4:50870717-50870736 None:intergenic 50.0%
CCCTGTCATCTGTCAAAGCA+TGG - chr8_4:50871069-50871088 None:intergenic 50.0%
CAGATGACAGGGATCATGGA+AGG + chr8_4:50871077-50871096 Msa1331350:intron 50.0%
GATGACAGGGATCATGGAAG+GGG + chr8_4:50871079-50871098 Msa1331350:intron 50.0%
TCATCTGCATCAACACTGCG+TGG - chr8_4:50871301-50871320 None:intergenic 50.0%
CCCATAGGTCATTTGGTTGC+AGG + chr8_4:50871527-50871546 Msa1331350:intron 50.0%
GGATGACACTGAAGCTTTGC+TGG + chr8_4:50871823-50871842 Msa1331350:CDS 50.0%
GTGGTCGTAACACCTCTCTT+AGG + chr8_4:50871962-50871981 Msa1331350:intron 50.0%
TTGCGAGCTTGGTTTCTCCA+CGG - chr8_4:50873019-50873038 None:intergenic 50.0%
GATGAATCGCTTTGCGAGCT+TGG - chr8_4:50873030-50873049 None:intergenic 50.0%
CTTCAGGCTCCAAACAACTC+AGG - chr8_4:50873126-50873145 None:intergenic 50.0%
CGCACACCACTCTCAAACCT+AGG + chr8_4:50869894-50869913 Msa1331350:CDS 55.0%
GCCCGACCCCAACAATTTCA+GGG - chr8_4:50870336-50870355 None:intergenic 55.0%
TGCCCGACCCCAACAATTTC+AGG - chr8_4:50870337-50870356 None:intergenic 55.0%
TTTGCAATTGAGGGGGGTGG+GGG - chr8_4:50870649-50870668 None:intergenic 55.0%
CTTTGCAATTGAGGGGGGTG+GGG - chr8_4:50870650-50870669 None:intergenic 55.0%
CCTTTGCAATTGAGGGGGGT+GGG - chr8_4:50870651-50870670 None:intergenic 55.0%
CCACCCCCCTCAATTGCAAA+GGG + chr8_4:50870649-50870668 Msa1331350:intron 55.0%
GAAAGACGGGCAGGATACAC+AGG + chr8_4:50870829-50870848 Msa1331350:CDS 55.0%
! CAGTGATGACGACGACGATG+AGG + chr8_4:50871802-50871821 Msa1331350:intron 55.0%
AAGGAGGCAGAGCTTATGCG+TGG + chr8_4:50872387-50872406 Msa1331350:CDS 55.0%
TGCGAGCTTGGTTTCTCCAC+GGG - chr8_4:50873018-50873037 None:intergenic 55.0%
GACCGCCGCTAGACCAACAT+GGG + chr8_4:50869790-50869809 Msa1331350:CDS 60.0%
! TGCCCATGTTGGTCTAGCGG+CGG - chr8_4:50869795-50869814 None:intergenic 60.0%
! CGGTGCCCATGTTGGTCTAG+CGG - chr8_4:50869798-50869817 None:intergenic 60.0%
CGCTAGACCAACATGGGCAC+CGG + chr8_4:50869796-50869815 Msa1331350:CDS 60.0%
CCCACCCCCCTCAATTGCAA+AGG + chr8_4:50870648-50870667 Msa1331350:intron 60.0%
CCCTTTGCAATTGAGGGGGG+TGG - chr8_4:50870652-50870671 None:intergenic 60.0%
GACAGGGATCATGGAAGGGG+CGG + chr8_4:50871082-50871101 Msa1331350:CDS 60.0%
GGCACAGGAAAAGCTGCGCA+AGG + chr8_4:50871874-50871893 Msa1331350:CDS 60.0%
GGTCTAGCGGCGGTCGTCAT+CGG - chr8_4:50869785-50869804 None:intergenic 65.0%
CGACCGCCGCTAGACCAACA+TGG + chr8_4:50869789-50869808 Msa1331350:CDS 65.0%
CCTTTGGCCGGTGCCCATGT+TGG - chr8_4:50869806-50869825 None:intergenic 65.0%
!! CCAACATGGGCACCGGCCAA+AGG + chr8_4:50869803-50869822 Msa1331350:CDS 65.0%
!! ACATGGGCACCGGCCAAAGG+TGG + chr8_4:50869806-50869825 Msa1331350:CDS 65.0%
CGGCGGTCGTCATCGGATCG+AGG - chr8_4:50869778-50869797 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 50869707 50873400 50869707 ID=Msa1331350;Name=Msa1331350
chr8_4 mRNA 50869707 50873400 50869707 ID=Msa1331350-mRNA-1;Parent=Msa1331350;Name=Msa1331350-mRNA-1;_AED=0.11;_eAED=0.11;_QI=78|1|1|1|1|1|7|294|227
chr8_4 exon 50869707 50869915 50869707 ID=Msa1331350-mRNA-1:exon:14893;Parent=Msa1331350-mRNA-1
chr8_4 exon 50870829 50870935 50870829 ID=Msa1331350-mRNA-1:exon:14894;Parent=Msa1331350-mRNA-1
chr8_4 exon 50871080 50871121 50871080 ID=Msa1331350-mRNA-1:exon:14895;Parent=Msa1331350-mRNA-1
chr8_4 exon 50871266 50871353 50871266 ID=Msa1331350-mRNA-1:exon:14896;Parent=Msa1331350-mRNA-1
chr8_4 exon 50871805 50871895 50871805 ID=Msa1331350-mRNA-1:exon:14897;Parent=Msa1331350-mRNA-1
chr8_4 exon 50872354 50872454 50872354 ID=Msa1331350-mRNA-1:exon:14898;Parent=Msa1331350-mRNA-1
chr8_4 exon 50872983 50873400 50872983 ID=Msa1331350-mRNA-1:exon:14899;Parent=Msa1331350-mRNA-1
chr8_4 five_prime_UTR 50869707 50869784 50869707 ID=Msa1331350-mRNA-1:five_prime_utr;Parent=Msa1331350-mRNA-1
chr8_4 CDS 50869785 50869915 50869785 ID=Msa1331350-mRNA-1:cds;Parent=Msa1331350-mRNA-1
chr8_4 CDS 50870829 50870935 50870829 ID=Msa1331350-mRNA-1:cds;Parent=Msa1331350-mRNA-1
chr8_4 CDS 50871080 50871121 50871080 ID=Msa1331350-mRNA-1:cds;Parent=Msa1331350-mRNA-1
chr8_4 CDS 50871266 50871353 50871266 ID=Msa1331350-mRNA-1:cds;Parent=Msa1331350-mRNA-1
chr8_4 CDS 50871805 50871895 50871805 ID=Msa1331350-mRNA-1:cds;Parent=Msa1331350-mRNA-1
chr8_4 CDS 50872354 50872454 50872354 ID=Msa1331350-mRNA-1:cds;Parent=Msa1331350-mRNA-1
chr8_4 CDS 50872983 50873106 50872983 ID=Msa1331350-mRNA-1:cds;Parent=Msa1331350-mRNA-1
chr8_4 three_prime_UTR 50873107 50873400 50873107 ID=Msa1331350-mRNA-1:three_prime_utr;Parent=Msa1331350-mRNA-1
Gene Sequence

>Msa1331350

ATGACGACCGCCGCTAGACCAACATGGGCACCGGCCAAAGGTGGAAACGAACAAGGCGGTACTCGAATTTTCGGTCCTTCCCAAAAATACTCTTCAAGAGATATCGCATCGCACACCACTCTCAAACCTAGGAAAGACGGGCAGGATACACAGGATGAGTTAAAGAGAAGGAACCTACGTGATGAACTTGATGAACGTGAAAGGAGGCACTTCTCATCAAAAAATAAATCGTATAATGATGACAGGGATCATGGAAGGGGCGGCCATCTATTTTTAGAAGGAACAAAAAGAGACATTGAAGACAACATCATTCCACGCAGTGTTGATGCAGATGATTCTGACGTTGAAGTCAACAGTGATGATGAAAGTGATGACGACGACGATGAGGATGACACTGAAGCTTTGCTGGCTGAGCTTGAACAAATAAAGAAGGAAAGGGCACAGGAAAAGCTGCGCAAGGAACAACAACAACAAGAGGAAGATCTTAAAGTAAAGGAGGCAGAGCTTATGCGTGGAAACCCTTTGATCAATAACCCGACATCTTTCAGTGTCAAAAGAAGGTGGGATGATGATGTGGTGTTCAAAAATCAAGCCCGTGGAGAAACCAAGCTCGCAAAGCGATTCATCAATGACACCATCAGGAATGATTTCCATAGGAAATTCCTGCACAAATACATGAAGTAA

Protein sequence

>Msa1331350

MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDIASHTTLKPRKDGQDTQDELKRRNLRDELDERERRHFSSKNKSYNDDRDHGRGGHLFLEGTKRDIEDNIIPRSVDADDSDVEVNSDDESDDDDDEDDTEALLAELEQIKKERAQEKLRKEQQQQEEDLKVKEAELMRGNPLINNPTSFSVKRRWDDDVVFKNQARGETKLAKRFINDTIRNDFHRKFLHKYMK*