Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135920 | XP_003621176.1 | 96.536 | 433 | 14 | 1 | 1 | 432 | 1 | 433 | 0.0 | 856 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135920 | sp|Q9LH89|Y3885_ARATH | 52.620 | 458 | 159 | 16 | 1 | 431 | 1 | 427 | 2.42e-124 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135920 | Q2HVR5 | 96.536 | 433 | 14 | 1 | 1 | 432 | 1 | 433 | 0.0 | 856 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106620 | Msa1135920 | 0.816111 | 6.544837e-52 | -8.615850e-47 |
| Msa0106710 | Msa1135920 | 0.809722 | 1.644494e-50 | -8.615850e-47 |
| Msa0624900 | Msa1135920 | 0.810352 | 1.202850e-50 | -8.615850e-47 |
| Msa0626460 | Msa1135920 | 0.800221 | 1.595563e-48 | -8.615850e-47 |
| Msa0664540 | Msa1135920 | 0.802451 | 5.574940e-49 | -8.615850e-47 |
| Msa0702720 | Msa1135920 | 0.843243 | 1.579589e-58 | -8.615850e-47 |
| Msa0833530 | Msa1135920 | 0.804055 | 2.595163e-49 | -8.615850e-47 |
| Msa0199940 | Msa1135920 | 0.803837 | 2.881130e-49 | -8.615850e-47 |
| Msa1006810 | Msa1135920 | 0.858847 | 6.218996e-63 | -8.615850e-47 |
| Msa1135920 | Msa1225860 | -0.805762 | 1.141278e-49 | -8.615850e-47 |
| Msa1135920 | Msa1341840 | 0.840233 | 9.836543e-58 | -8.615850e-47 |
| Msa1135920 | Msa1461370 | 0.838356 | 3.018714e-57 | -8.615850e-47 |
| Msa0583360 | Msa1135920 | -0.806502 | 7.973560e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135920 | MtrunA17_Chr7g0217121 | 96.536 | 433 | 14 | 1 | 1 | 432 | 1 | 433 | 0.0 | 856 |
| Msa1135920 | MtrunA17_Chr6g0453031 | 51.957 | 460 | 157 | 13 | 1 | 432 | 1 | 424 | 1.46e-141 | 411 |
| Msa1135920 | MtrunA17_Chr3g0089011 | 67.296 | 159 | 43 | 3 | 278 | 432 | 2 | 155 | 9.61e-59 | 189 |
| Msa1135920 | MtrunA17_Chr1g0171871 | 38.408 | 289 | 145 | 8 | 162 | 431 | 90 | 364 | 3.50e-52 | 179 |
| Msa1135920 | MtrunA17_Chr8g0352771 | 47.399 | 173 | 69 | 4 | 262 | 431 | 102 | 255 | 1.10e-40 | 145 |
| Msa1135920 | MtrunA17_Chr3g0105871 | 49.398 | 166 | 64 | 4 | 265 | 430 | 87 | 232 | 5.17e-40 | 143 |
| Msa1135920 | MtrunA17_Chr5g0437471 | 40.394 | 203 | 100 | 3 | 230 | 432 | 59 | 240 | 1.44e-38 | 139 |
| Msa1135920 | MtrunA17_Chr7g0256501 | 36.515 | 241 | 120 | 8 | 203 | 431 | 206 | 425 | 2.65e-38 | 143 |
| Msa1135920 | MtrunA17_Chr3g0083531 | 44.848 | 165 | 72 | 3 | 266 | 430 | 115 | 260 | 1.20e-37 | 138 |
| Msa1135920 | MtrunA17_Chr7g0266401 | 38.914 | 221 | 106 | 6 | 219 | 431 | 206 | 405 | 3.29e-35 | 134 |
| Msa1135920 | MtrunA17_Chr7g0267591 | 40.237 | 169 | 89 | 3 | 263 | 431 | 123 | 279 | 3.72e-35 | 131 |
| Msa1135920 | MtrunA17_Chr5g0412021 | 70.652 | 92 | 23 | 2 | 306 | 393 | 1 | 92 | 1.63e-34 | 124 |
| Msa1135920 | MtrunA17_Chr1g0196971 | 39.091 | 220 | 105 | 6 | 219 | 430 | 170 | 368 | 2.11e-34 | 131 |
| Msa1135920 | MtrunA17_Chr5g0431071 | 42.857 | 168 | 75 | 3 | 263 | 430 | 107 | 253 | 4.09e-34 | 128 |
| Msa1135920 | MtrunA17_Chr7g0248731 | 54.198 | 131 | 37 | 3 | 306 | 432 | 1 | 112 | 1.18e-33 | 122 |
| Msa1135920 | MtrunA17_Chr8g0388481 | 42.442 | 172 | 77 | 4 | 264 | 430 | 213 | 367 | 2.52e-32 | 125 |
| Msa1135920 | MtrunA17_Chr8g0392761 | 35.662 | 272 | 121 | 8 | 161 | 430 | 54 | 273 | 8.38e-31 | 119 |
| Msa1135920 | MtrunA17_Chr3g0113971 | 39.394 | 165 | 79 | 3 | 268 | 432 | 93 | 236 | 1.11e-30 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135920 | AT3G28850.1 | 52.620 | 458 | 159 | 16 | 1 | 431 | 1 | 427 | 2.46e-125 | 370 |
| Msa1135920 | AT5G39865.1 | 46.171 | 457 | 152 | 11 | 1 | 431 | 1 | 389 | 1.40e-124 | 367 |
| Msa1135920 | AT3G57070.1 | 36.202 | 337 | 130 | 12 | 157 | 431 | 103 | 416 | 8.18e-50 | 174 |
| Msa1135920 | AT2G41330.1 | 31.293 | 441 | 202 | 18 | 19 | 431 | 34 | 401 | 5.29e-49 | 172 |
| Msa1135920 | AT5G13810.1 | 41.872 | 203 | 86 | 5 | 229 | 430 | 101 | 272 | 6.18e-40 | 144 |
| Msa1135920 | AT5G58530.1 | 40.513 | 195 | 87 | 4 | 248 | 432 | 92 | 267 | 1.17e-39 | 144 |
| Msa1135920 | AT5G03870.1 | 34.234 | 333 | 137 | 11 | 159 | 430 | 72 | 383 | 1.27e-37 | 141 |
| Msa1135920 | AT1G64500.1 | 45.029 | 171 | 77 | 5 | 263 | 430 | 209 | 365 | 1.48e-36 | 137 |
| Msa1135920 | AT4G10630.1 | 35.616 | 292 | 143 | 9 | 154 | 430 | 72 | 333 | 1.01e-34 | 132 |
| Msa1135920 | AT5G06470.1 | 42.857 | 168 | 81 | 4 | 263 | 430 | 86 | 238 | 5.50e-34 | 127 |
| Msa1135920 | AT1G32760.1 | 36.397 | 272 | 122 | 8 | 161 | 430 | 91 | 313 | 1.03e-30 | 120 |
| Msa1135920 | AT3G11773.1 | 39.130 | 161 | 76 | 3 | 270 | 430 | 11 | 149 | 1.25e-25 | 102 |
| Msa1135920 | AT5G01420.1 | 39.053 | 169 | 81 | 4 | 263 | 430 | 253 | 400 | 2.67e-23 | 101 |
| Msa1135920 | AT3G11773.2 | 36.154 | 130 | 61 | 3 | 301 | 430 | 92 | 199 | 3.93e-16 | 77.0 |
Find 74 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCATGTGTTGATTGTTTC+TGG | 0.087504 | 7_4:+3758275 | None:intergenic |
| CATCAATTGATGTTTGTTTA+AGG | 0.118181 | 7_4:+3758030 | None:intergenic |
| AAGATTGTTCCTAGTGTTAA+TGG | 0.198810 | 7_4:-3758563 | Msa1135920:CDS |
| GGTGTTCTTGTTGGTGTCTT+TGG | 0.219568 | 7_4:+3758308 | None:intergenic |
| ATTTGAAGCCACATTGATTT+AGG | 0.250995 | 7_4:+3758155 | None:intergenic |
| GATGTTTGTTTAAGGTAAAA+AGG | 0.259720 | 7_4:+3758038 | None:intergenic |
| AATCAACACATGGGAGTTAA+TGG | 0.270519 | 7_4:-3758267 | Msa1135920:CDS |
| AGAGATGTATCAATGCATTT+AGG | 0.299301 | 7_4:-3757849 | Msa1135920:CDS |
| TGCCCGGATTGTAATGAAAA+TGG | 0.314864 | 7_4:-3757507 | Msa1135920:CDS |
| GGTCGTGAAGAAGGCGAGTT+TGG | 0.317310 | 7_4:-3757540 | Msa1135920:CDS |
| ACATGCATTGAATAGCTTCT+TGG | 0.319625 | 7_4:+3758689 | None:intergenic |
| GTGAGAATTGTGGTGATATA+AGG | 0.346142 | 7_4:-3757647 | Msa1135920:CDS |
| AGAAAAGGAAAATGAGAAAA+GGG | 0.347133 | 7_4:-3758450 | Msa1135920:CDS |
| GTTCCTTGTGAAACTTGTTT+TGG | 0.367950 | 7_4:-3757621 | Msa1135920:CDS |
| AAGAAAAGGAAAATGAGAAA+AGG | 0.368729 | 7_4:-3758451 | Msa1135920:CDS |
| TTCTACTTCACAAGCTTAAG+AGG | 0.391723 | 7_4:-3757945 | Msa1135920:CDS |
| ATCAATGCATTTAGGATTCA+AGG | 0.410818 | 7_4:-3757841 | Msa1135920:CDS |
| TCACCAGGTGGTGTTCTTGT+TGG | 0.422909 | 7_4:+3758299 | None:intergenic |
| ATTGAATAGCTTCTTGGAAC+AGG | 0.429704 | 7_4:+3758695 | None:intergenic |
| ATCTTGAGAGAGTTCTTGTA+AGG | 0.439309 | 7_4:+3758064 | None:intergenic |
| TGGAAAGCTTGAGAAATTGT+TGG | 0.442255 | 7_4:-3757706 | Msa1135920:CDS |
| GCACTCACATCAACCACATT+AGG | 0.444268 | 7_4:-3758623 | Msa1135920:CDS |
| CTAAATGATGAAATCACATC+AGG | 0.449410 | 7_4:+3758092 | None:intergenic |
| ATTGAGAAACTTCATGAAGA+TGG | 0.453523 | 7_4:-3757726 | Msa1135920:CDS |
| GAAAAGGGAGAAGGAAAAGA+AGG | 0.458897 | 7_4:-3758435 | Msa1135920:CDS |
| CTCTCAAAATCATCCTCACT+TGG | 0.477958 | 7_4:+3757895 | None:intergenic |
| TTAGGTGATTTGTATGGTGG+AGG | 0.481073 | 7_4:-3757801 | Msa1135920:CDS |
| AGGTGATTCGGCGATCGAAA+AGG | 0.481626 | 7_4:+3758224 | None:intergenic |
| TGTAAAATCTACTATGAAGA+TGG | 0.484572 | 7_4:-3757594 | Msa1135920:CDS |
| GTTTGGATTCCAACGTTGCC+CGG | 0.485762 | 7_4:-3757523 | Msa1135920:CDS |
| GATGATCATGGTCGTGAAGA+AGG | 0.495634 | 7_4:-3757549 | Msa1135920:CDS |
| TGAAGCCACATTGATTTAGG+AGG | 0.496188 | 7_4:+3758158 | None:intergenic |
| TAAGGTTGGTGGAAAGGAAA+AGG | 0.498704 | 7_4:-3757973 | Msa1135920:CDS |
| TTTGTTGGTAAGAATTACAT+TGG | 0.498874 | 7_4:-3757762 | Msa1135920:CDS |
| TTGATTGTTTCTGGTTCACC+AGG | 0.504436 | 7_4:+3758284 | None:intergenic |
| ACAAACATCAATTGATGAAG+AGG | 0.514395 | 7_4:-3758024 | Msa1135920:CDS |
| TTTGTGGATGTTAAGGTTGG+TGG | 0.516446 | 7_4:-3757984 | Msa1135920:CDS |
| GGAAAATGAGAAAAGGGAGA+AGG | 0.518898 | 7_4:-3758444 | Msa1135920:CDS |
| CATCAGGATCAAAATCAACT+TGG | 0.528722 | 7_4:+3758108 | None:intergenic |
| GAATTACATTGGTGGAGTTG+AGG | 0.540698 | 7_4:-3757751 | Msa1135920:CDS |
| TTTGATGTCAATGGCGGTGA+AGG | 0.547126 | 7_4:-3758188 | Msa1135920:CDS |
| GTTGGTAAGAATTACATTGG+TGG | 0.551303 | 7_4:-3757759 | Msa1135920:CDS |
| GAGGAAGAATATGATGATCA+TGG | 0.555068 | 7_4:-3757561 | Msa1135920:CDS |
| GGTTGATTGAGGCAAAGACT+TGG | 0.560977 | 7_4:-3758367 | Msa1135920:CDS |
| TCTACTTCACAAGCTTAAGA+GGG | 0.584829 | 7_4:-3757944 | Msa1135920:CDS |
| TAACTGTCATCTTCAGATTG+AGG | 0.585248 | 7_4:+3758656 | None:intergenic |
| GGATGTTAAGGTTGGTGGAA+AGG | 0.588762 | 7_4:-3757979 | Msa1135920:CDS |
| CTGTCATCTTCAGATTGAGG+TGG | 0.591852 | 7_4:+3758659 | None:intergenic |
| AAAATTGAGGATAGTAGTGG+TGG | 0.600502 | 7_4:-3757672 | Msa1135920:CDS |
| TTTGAAGAAGAAGAATTGAG+TGG | 0.600540 | 7_4:+3758590 | None:intergenic |
| ATTGTTTCTGGTTCACCAGG+TGG | 0.602186 | 7_4:+3758287 | None:intergenic |
| AACCAGAAACAATCAACACA+TGG | 0.603332 | 7_4:-3758277 | Msa1135920:CDS |
| CTTCCAAAACAAGTTTCACA+AGG | 0.615798 | 7_4:+3757618 | None:intergenic |
| TCATGAACACCATTAACACT+AGG | 0.618194 | 7_4:+3758554 | None:intergenic |
| CATTACAATCCGGGCAACGT+TGG | 0.619544 | 7_4:+3757514 | None:intergenic |
| AACACATGGGAGTTAATGGA+AGG | 0.623703 | 7_4:-3758263 | Msa1135920:CDS |
| GGAATGTTGTGAGAAAATTG+AGG | 0.625190 | 7_4:-3757685 | Msa1135920:CDS |
| TGTCATCTTCAGATTGAGGT+GGG | 0.627466 | 7_4:+3758660 | None:intergenic |
| ATGAAGATTGTTGCCAAGTG+AGG | 0.627753 | 7_4:-3757908 | Msa1135920:CDS |
| TTGTAACTAGTAGCAGCACA+CGG | 0.628118 | 7_4:+3757470 | None:intergenic |
| TGTAACTAGTAGCAGCACAC+GGG | 0.628183 | 7_4:+3757471 | None:intergenic |
| AGTGGTGGATGTGAGAATTG+TGG | 0.628466 | 7_4:-3757657 | Msa1135920:CDS |
| GAGAAAATTGAGGATAGTAG+TGG | 0.638020 | 7_4:-3757675 | Msa1135920:CDS |
| TGGTGGAGGAAGATTGCCAA+AGG | 0.640203 | 7_4:-3757787 | Msa1135920:CDS |
| ACACCAACAAGAACACCACC+TGG | 0.657599 | 7_4:-3758302 | Msa1135920:CDS |
| CTACTTCACAAGCTTAAGAG+GGG | 0.665104 | 7_4:-3757943 | Msa1135920:CDS |
| TTGATGTGAGTGCAACAACA+TGG | 0.691111 | 7_4:+3758633 | None:intergenic |
| TGGTTTGAGAGTACCTAATG+TGG | 0.692293 | 7_4:+3758610 | None:intergenic |
| ACCAGAAACAATCAACACAT+GGG | 0.696633 | 7_4:-3758276 | Msa1135920:CDS |
| TTGATCCTCCTAAATCAATG+TGG | 0.706563 | 7_4:-3758163 | Msa1135920:CDS |
| GTAACTAGTAGCAGCACACG+GGG | 0.716227 | 7_4:+3757472 | None:intergenic |
| AATGTGGCTTCAAATTACCG+AGG | 0.717932 | 7_4:-3758147 | Msa1135920:CDS |
| TGAAGATGGTGATGACGACG+AGG | 0.723023 | 7_4:-3757580 | Msa1135920:CDS |
| AATGCATTTAGGATTCAAGG+AGG | 0.743777 | 7_4:-3757838 | Msa1135920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTCAAGTTTTGTAAT+GGG | - | chr7_4:3757693-3757712 | Msa1135920:CDS | 20.0% |
| !!! | AAAGTGAAAGAATTTTCAAT+GGG | - | chr7_4:3757839-3757858 | Msa1135920:CDS | 20.0% |
| !!! | ATGTTTGTTTAAGGTAAAAA+GGG | + | chr7_4:3758192-3758211 | None:intergenic | 20.0% |
| !!! | ATGATTTCAAGTTTTGTAAT+GGG | - | chr7_4:3757693-3757712 | Msa1135920:CDS | 20.0% |
| !!! | AAAGTGAAAGAATTTTCAAT+GGG | - | chr7_4:3757839-3757858 | Msa1135920:CDS | 20.0% |
| !!! | ATGTTTGTTTAAGGTAAAAA+GGG | + | chr7_4:3758192-3758211 | None:intergenic | 20.0% |
| !!! | CATGATTTCAAGTTTTGTAA+TGG | - | chr7_4:3757692-3757711 | Msa1135920:CDS | 25.0% |
| !! | TTAAAGAGAGTGAAAGTTTT+AGG | - | chr7_4:3757720-3757739 | Msa1135920:CDS | 25.0% |
| ! | AAGAAAAGGAAAATGAGAAA+AGG | - | chr7_4:3757777-3757796 | Msa1135920:CDS | 25.0% |
| ! | AGAAAAGGAAAATGAGAAAA+GGG | - | chr7_4:3757778-3757797 | Msa1135920:CDS | 25.0% |
| !! | GAAAGTGAAAGAATTTTCAA+TGG | - | chr7_4:3757838-3757857 | Msa1135920:CDS | 25.0% |
| !! | AAGTGAAAGAATTTTCAATG+GGG | - | chr7_4:3757840-3757859 | Msa1135920:CDS | 25.0% |
| !! | GATGTTTGTTTAAGGTAAAA+AGG | + | chr7_4:3758193-3758212 | None:intergenic | 25.0% |
| ! | CATCAATTGATGTTTGTTTA+AGG | + | chr7_4:3758201-3758220 | None:intergenic | 25.0% |
| !!! | AATGAAAGATGATGTTTTTG+TGG | - | chr7_4:3758228-3758247 | Msa1135920:CDS | 25.0% |
| !! | TTTGTTGGTAAGAATTACAT+TGG | - | chr7_4:3758466-3758485 | Msa1135920:CDS | 25.0% |
| ! | TGTAAAATCTACTATGAAGA+TGG | - | chr7_4:3758634-3758653 | Msa1135920:CDS | 25.0% |
| !!! | CATGATTTCAAGTTTTGTAA+TGG | - | chr7_4:3757692-3757711 | Msa1135920:CDS | 25.0% |
| !! | TTAAAGAGAGTGAAAGTTTT+AGG | - | chr7_4:3757720-3757739 | Msa1135920:CDS | 25.0% |
| ! | AAGAAAAGGAAAATGAGAAA+AGG | - | chr7_4:3757777-3757796 | Msa1135920:CDS | 25.0% |
| ! | AGAAAAGGAAAATGAGAAAA+GGG | - | chr7_4:3757778-3757797 | Msa1135920:CDS | 25.0% |
| !! | GAAAGTGAAAGAATTTTCAA+TGG | - | chr7_4:3757838-3757857 | Msa1135920:CDS | 25.0% |
| !! | AAGTGAAAGAATTTTCAATG+GGG | - | chr7_4:3757840-3757859 | Msa1135920:CDS | 25.0% |
| !! | GATGTTTGTTTAAGGTAAAA+AGG | + | chr7_4:3758193-3758212 | None:intergenic | 25.0% |
| ! | CATCAATTGATGTTTGTTTA+AGG | + | chr7_4:3758201-3758220 | None:intergenic | 25.0% |
| !!! | AATGAAAGATGATGTTTTTG+TGG | - | chr7_4:3758228-3758247 | Msa1135920:CDS | 25.0% |
| !! | TTTGTTGGTAAGAATTACAT+TGG | - | chr7_4:3758466-3758485 | Msa1135920:CDS | 25.0% |
| ! | TGTAAAATCTACTATGAAGA+TGG | - | chr7_4:3758634-3758653 | Msa1135920:CDS | 25.0% |
| TTTGAAGAAGAAGAATTGAG+TGG | + | chr7_4:3757641-3757660 | None:intergenic | 30.0% | |
| AAGATTGTTCCTAGTGTTAA+TGG | - | chr7_4:3757665-3757684 | Msa1135920:CDS | 30.0% | |
| GCAAAAACTCAAGAAAGAAA+AGG | - | chr7_4:3757763-3757782 | Msa1135920:CDS | 30.0% | |
| !! | ATTTGAAGCCACATTGATTT+AGG | + | chr7_4:3758076-3758095 | None:intergenic | 30.0% |
| CTAAATGATGAAATCACATC+AGG | + | chr7_4:3758139-3758158 | None:intergenic | 30.0% | |
| ACAAACATCAATTGATGAAG+AGG | - | chr7_4:3758204-3758223 | Msa1135920:CDS | 30.0% | |
| !! | TGATGTTTTTGTGGATGTTA+AGG | - | chr7_4:3758237-3758256 | Msa1135920:CDS | 30.0% |
| AGAGATGTATCAATGCATTT+AGG | - | chr7_4:3758379-3758398 | Msa1135920:CDS | 30.0% | |
| ! | ATCAATGCATTTAGGATTCA+AGG | - | chr7_4:3758387-3758406 | Msa1135920:CDS | 30.0% |
| TTCTTACCAACAAAAACCTT+TGG | + | chr7_4:3758460-3758479 | None:intergenic | 30.0% | |
| ATTGAGAAACTTCATGAAGA+TGG | - | chr7_4:3758502-3758521 | Msa1135920:CDS | 30.0% | |
| ! | AGTCCATTTTCATTACAATC+CGG | + | chr7_4:3758727-3758746 | None:intergenic | 30.0% |
| TTTGAAGAAGAAGAATTGAG+TGG | + | chr7_4:3757641-3757660 | None:intergenic | 30.0% | |
| AAGATTGTTCCTAGTGTTAA+TGG | - | chr7_4:3757665-3757684 | Msa1135920:CDS | 30.0% | |
| GCAAAAACTCAAGAAAGAAA+AGG | - | chr7_4:3757763-3757782 | Msa1135920:CDS | 30.0% | |
| !! | ATTTGAAGCCACATTGATTT+AGG | + | chr7_4:3758076-3758095 | None:intergenic | 30.0% |
| CTAAATGATGAAATCACATC+AGG | + | chr7_4:3758139-3758158 | None:intergenic | 30.0% | |
| ACAAACATCAATTGATGAAG+AGG | - | chr7_4:3758204-3758223 | Msa1135920:CDS | 30.0% | |
| !! | TGATGTTTTTGTGGATGTTA+AGG | - | chr7_4:3758237-3758256 | Msa1135920:CDS | 30.0% |
| AGAGATGTATCAATGCATTT+AGG | - | chr7_4:3758379-3758398 | Msa1135920:CDS | 30.0% | |
| ! | ATCAATGCATTTAGGATTCA+AGG | - | chr7_4:3758387-3758406 | Msa1135920:CDS | 30.0% |
| TTCTTACCAACAAAAACCTT+TGG | + | chr7_4:3758460-3758479 | None:intergenic | 30.0% | |
| ATTGAGAAACTTCATGAAGA+TGG | - | chr7_4:3758502-3758521 | Msa1135920:CDS | 30.0% | |
| ! | AGTCCATTTTCATTACAATC+CGG | + | chr7_4:3758727-3758746 | None:intergenic | 30.0% |
| ATTGAATAGCTTCTTGGAAC+AGG | + | chr7_4:3757536-3757555 | None:intergenic | 35.0% | |
| ACATGCATTGAATAGCTTCT+TGG | + | chr7_4:3757542-3757561 | None:intergenic | 35.0% | |
| TAACTGTCATCTTCAGATTG+AGG | + | chr7_4:3757575-3757594 | None:intergenic | 35.0% | |
| TCATGAACACCATTAACACT+AGG | + | chr7_4:3757677-3757696 | None:intergenic | 35.0% | |
| !! | ATTTTCAATGGGGTTGATTG+AGG | - | chr7_4:3757850-3757869 | Msa1135920:CDS | 35.0% |
| AACCAGAAACAATCAACACA+TGG | - | chr7_4:3757951-3757970 | Msa1135920:CDS | 35.0% | |
| ACCAGAAACAATCAACACAT+GGG | - | chr7_4:3757952-3757971 | Msa1135920:CDS | 35.0% | |
| AATCAACACATGGGAGTTAA+TGG | - | chr7_4:3757961-3757980 | Msa1135920:CDS | 35.0% | |
| ! | CATCAAAAGAGAAGCTTTTG+AGG | + | chr7_4:3758027-3758046 | None:intergenic | 35.0% |
| ! | AGCTTCTCTTTTGATGTCAA+TGG | - | chr7_4:3758031-3758050 | Msa1135920:CDS | 35.0% |
| ! | TTCTCTTTTGATGTCAATGG+CGG | - | chr7_4:3758034-3758053 | Msa1135920:CDS | 35.0% |
| TTGATCCTCCTAAATCAATG+TGG | - | chr7_4:3758065-3758084 | Msa1135920:CDS | 35.0% | |
| !!! | GTTGAGTTTTGATTCTTCCT+CGG | + | chr7_4:3758101-3758120 | None:intergenic | 35.0% |
| CATCAGGATCAAAATCAACT+TGG | + | chr7_4:3758123-3758142 | None:intergenic | 35.0% | |
| ATCTTGAGAGAGTTCTTGTA+AGG | + | chr7_4:3758167-3758186 | None:intergenic | 35.0% | |
| ! | GTTTTTGTGGATGTTAAGGT+TGG | - | chr7_4:3758241-3758260 | Msa1135920:CDS | 35.0% |
| TTCTACTTCACAAGCTTAAG+AGG | - | chr7_4:3758283-3758302 | Msa1135920:CDS | 35.0% | |
| TCTACTTCACAAGCTTAAGA+GGG | - | chr7_4:3758284-3758303 | Msa1135920:CDS | 35.0% | |
| !! | AAGTGAGGATGATTTTGAGA+GGG | - | chr7_4:3758335-3758354 | Msa1135920:CDS | 35.0% |
| ! | AATGCATTTAGGATTCAAGG+AGG | - | chr7_4:3758390-3758409 | Msa1135920:CDS | 35.0% |
| !! | GAGCTTTTAGGTGATTTGTA+TGG | - | chr7_4:3758421-3758440 | Msa1135920:CDS | 35.0% |
| !! | CTTTTAGGTGATTTGTATGG+TGG | - | chr7_4:3758424-3758443 | Msa1135920:CDS | 35.0% |
| ! | AGATTGCCAAAGGTTTTTGT+TGG | - | chr7_4:3758451-3758470 | Msa1135920:CDS | 35.0% |
| ! | GTTGGTAAGAATTACATTGG+TGG | - | chr7_4:3758469-3758488 | Msa1135920:CDS | 35.0% |
| TGGAAAGCTTGAGAAATTGT+TGG | - | chr7_4:3758522-3758541 | Msa1135920:CDS | 35.0% | |
| GGAATGTTGTGAGAAAATTG+AGG | - | chr7_4:3758543-3758562 | Msa1135920:CDS | 35.0% | |
| GAGAAAATTGAGGATAGTAG+TGG | - | chr7_4:3758553-3758572 | Msa1135920:CDS | 35.0% | |
| AAAATTGAGGATAGTAGTGG+TGG | - | chr7_4:3758556-3758575 | Msa1135920:CDS | 35.0% | |
| GTGAGAATTGTGGTGATATA+AGG | - | chr7_4:3758581-3758600 | Msa1135920:CDS | 35.0% | |
| !! | GTTCCTTGTGAAACTTGTTT+TGG | - | chr7_4:3758607-3758626 | Msa1135920:CDS | 35.0% |
| CTTCCAAAACAAGTTTCACA+AGG | + | chr7_4:3758613-3758632 | None:intergenic | 35.0% | |
| GAGGAAGAATATGATGATCA+TGG | - | chr7_4:3758667-3758686 | Msa1135920:CDS | 35.0% | |
| ! | GTCCATTTTCATTACAATCC+GGG | + | chr7_4:3758726-3758745 | None:intergenic | 35.0% |
| ATTGAATAGCTTCTTGGAAC+AGG | + | chr7_4:3757536-3757555 | None:intergenic | 35.0% | |
| ACATGCATTGAATAGCTTCT+TGG | + | chr7_4:3757542-3757561 | None:intergenic | 35.0% | |
| TAACTGTCATCTTCAGATTG+AGG | + | chr7_4:3757575-3757594 | None:intergenic | 35.0% | |
| TCATGAACACCATTAACACT+AGG | + | chr7_4:3757677-3757696 | None:intergenic | 35.0% | |
| !! | ATTTTCAATGGGGTTGATTG+AGG | - | chr7_4:3757850-3757869 | Msa1135920:CDS | 35.0% |
| AACCAGAAACAATCAACACA+TGG | - | chr7_4:3757951-3757970 | Msa1135920:CDS | 35.0% | |
| ACCAGAAACAATCAACACAT+GGG | - | chr7_4:3757952-3757971 | Msa1135920:CDS | 35.0% | |
| AATCAACACATGGGAGTTAA+TGG | - | chr7_4:3757961-3757980 | Msa1135920:CDS | 35.0% | |
| ! | CATCAAAAGAGAAGCTTTTG+AGG | + | chr7_4:3758027-3758046 | None:intergenic | 35.0% |
| ! | AGCTTCTCTTTTGATGTCAA+TGG | - | chr7_4:3758031-3758050 | Msa1135920:CDS | 35.0% |
| ! | TTCTCTTTTGATGTCAATGG+CGG | - | chr7_4:3758034-3758053 | Msa1135920:CDS | 35.0% |
| TTGATCCTCCTAAATCAATG+TGG | - | chr7_4:3758065-3758084 | Msa1135920:CDS | 35.0% | |
| !!! | GTTGAGTTTTGATTCTTCCT+CGG | + | chr7_4:3758101-3758120 | None:intergenic | 35.0% |
| CATCAGGATCAAAATCAACT+TGG | + | chr7_4:3758123-3758142 | None:intergenic | 35.0% | |
| ATCTTGAGAGAGTTCTTGTA+AGG | + | chr7_4:3758167-3758186 | None:intergenic | 35.0% | |
| ! | GTTTTTGTGGATGTTAAGGT+TGG | - | chr7_4:3758241-3758260 | Msa1135920:CDS | 35.0% |
| TTCTACTTCACAAGCTTAAG+AGG | - | chr7_4:3758283-3758302 | Msa1135920:CDS | 35.0% | |
| TCTACTTCACAAGCTTAAGA+GGG | - | chr7_4:3758284-3758303 | Msa1135920:CDS | 35.0% | |
| !! | AAGTGAGGATGATTTTGAGA+GGG | - | chr7_4:3758335-3758354 | Msa1135920:CDS | 35.0% |
| ! | AATGCATTTAGGATTCAAGG+AGG | - | chr7_4:3758390-3758409 | Msa1135920:CDS | 35.0% |
| !! | GAGCTTTTAGGTGATTTGTA+TGG | - | chr7_4:3758421-3758440 | Msa1135920:CDS | 35.0% |
| !! | CTTTTAGGTGATTTGTATGG+TGG | - | chr7_4:3758424-3758443 | Msa1135920:CDS | 35.0% |
| ! | AGATTGCCAAAGGTTTTTGT+TGG | - | chr7_4:3758451-3758470 | Msa1135920:CDS | 35.0% |
| ! | GTTGGTAAGAATTACATTGG+TGG | - | chr7_4:3758469-3758488 | Msa1135920:CDS | 35.0% |
| TGGAAAGCTTGAGAAATTGT+TGG | - | chr7_4:3758522-3758541 | Msa1135920:CDS | 35.0% | |
| GGAATGTTGTGAGAAAATTG+AGG | - | chr7_4:3758543-3758562 | Msa1135920:CDS | 35.0% | |
| GAGAAAATTGAGGATAGTAG+TGG | - | chr7_4:3758553-3758572 | Msa1135920:CDS | 35.0% | |
| AAAATTGAGGATAGTAGTGG+TGG | - | chr7_4:3758556-3758575 | Msa1135920:CDS | 35.0% | |
| GTGAGAATTGTGGTGATATA+AGG | - | chr7_4:3758581-3758600 | Msa1135920:CDS | 35.0% | |
| !! | GTTCCTTGTGAAACTTGTTT+TGG | - | chr7_4:3758607-3758626 | Msa1135920:CDS | 35.0% |
| CTTCCAAAACAAGTTTCACA+AGG | + | chr7_4:3758613-3758632 | None:intergenic | 35.0% | |
| GAGGAAGAATATGATGATCA+TGG | - | chr7_4:3758667-3758686 | Msa1135920:CDS | 35.0% | |
| ! | GTCCATTTTCATTACAATCC+GGG | + | chr7_4:3758726-3758745 | None:intergenic | 35.0% |
| !! | ATGTCTACATCGCTTTTGCT+TGG | + | chr7_4:3757495-3757514 | None:intergenic | 40.0% |
| TGTCATCTTCAGATTGAGGT+GGG | + | chr7_4:3757571-3757590 | None:intergenic | 40.0% | |
| TTGATGTGAGTGCAACAACA+TGG | + | chr7_4:3757598-3757617 | None:intergenic | 40.0% | |
| !! | TGGTTTGAGAGTACCTAATG+TGG | + | chr7_4:3757621-3757640 | None:intergenic | 40.0% |
| GGAAAATGAGAAAAGGGAGA+AGG | - | chr7_4:3757784-3757803 | Msa1135920:CDS | 40.0% | |
| GAAAAGGGAGAAGGAAAAGA+AGG | - | chr7_4:3757793-3757812 | Msa1135920:CDS | 40.0% | |
| !! | TTGATTGTTTCTGGTTCACC+AGG | + | chr7_4:3757947-3757966 | None:intergenic | 40.0% |
| !! | TCCCATGTGTTGATTGTTTC+TGG | + | chr7_4:3757956-3757975 | None:intergenic | 40.0% |
| AACACATGGGAGTTAATGGA+AGG | - | chr7_4:3757965-3757984 | Msa1135920:CDS | 40.0% | |
| !!! | GAGAAGCTTTTGAGGTGATT+CGG | + | chr7_4:3758019-3758038 | None:intergenic | 40.0% |
| !! | TGAAGCCACATTGATTTAGG+AGG | + | chr7_4:3758073-3758092 | None:intergenic | 40.0% |
| AATGTGGCTTCAAATTACCG+AGG | - | chr7_4:3758081-3758100 | Msa1135920:CDS | 40.0% | |
| TTTGTGGATGTTAAGGTTGG+TGG | - | chr7_4:3758244-3758263 | Msa1135920:CDS | 40.0% | |
| !! | TAAGGTTGGTGGAAAGGAAA+AGG | - | chr7_4:3758255-3758274 | Msa1135920:CDS | 40.0% |
| CTACTTCACAAGCTTAAGAG+GGG | - | chr7_4:3758285-3758304 | Msa1135920:CDS | 40.0% | |
| ATGAAGATTGTTGCCAAGTG+AGG | - | chr7_4:3758320-3758339 | Msa1135920:CDS | 40.0% | |
| CTCTCAAAATCATCCTCACT+TGG | + | chr7_4:3758336-3758355 | None:intergenic | 40.0% | |
| ! | CAAGTGAGGATGATTTTGAG+AGG | - | chr7_4:3758334-3758353 | Msa1135920:CDS | 40.0% |
| !! | AGGATGATTTTGAGAGGGTT+AGG | - | chr7_4:3758340-3758359 | Msa1135920:CDS | 40.0% |
| ! | TTAGGTGATTTGTATGGTGG+AGG | - | chr7_4:3758427-3758446 | Msa1135920:CDS | 40.0% |
| GAATTACATTGGTGGAGTTG+AGG | - | chr7_4:3758477-3758496 | Msa1135920:CDS | 40.0% | |
| TGCCCGGATTGTAATGAAAA+TGG | - | chr7_4:3758721-3758740 | Msa1135920:CDS | 40.0% | |
| !! | ATGTCTACATCGCTTTTGCT+TGG | + | chr7_4:3757495-3757514 | None:intergenic | 40.0% |
| TGTCATCTTCAGATTGAGGT+GGG | + | chr7_4:3757571-3757590 | None:intergenic | 40.0% | |
| TTGATGTGAGTGCAACAACA+TGG | + | chr7_4:3757598-3757617 | None:intergenic | 40.0% | |
| !! | TGGTTTGAGAGTACCTAATG+TGG | + | chr7_4:3757621-3757640 | None:intergenic | 40.0% |
| GGAAAATGAGAAAAGGGAGA+AGG | - | chr7_4:3757784-3757803 | Msa1135920:CDS | 40.0% | |
| GAAAAGGGAGAAGGAAAAGA+AGG | - | chr7_4:3757793-3757812 | Msa1135920:CDS | 40.0% | |
| !! | TTGATTGTTTCTGGTTCACC+AGG | + | chr7_4:3757947-3757966 | None:intergenic | 40.0% |
| !! | TCCCATGTGTTGATTGTTTC+TGG | + | chr7_4:3757956-3757975 | None:intergenic | 40.0% |
| AACACATGGGAGTTAATGGA+AGG | - | chr7_4:3757965-3757984 | Msa1135920:CDS | 40.0% | |
| !!! | GAGAAGCTTTTGAGGTGATT+CGG | + | chr7_4:3758019-3758038 | None:intergenic | 40.0% |
| !! | TGAAGCCACATTGATTTAGG+AGG | + | chr7_4:3758073-3758092 | None:intergenic | 40.0% |
| AATGTGGCTTCAAATTACCG+AGG | - | chr7_4:3758081-3758100 | Msa1135920:CDS | 40.0% | |
| TTTGTGGATGTTAAGGTTGG+TGG | - | chr7_4:3758244-3758263 | Msa1135920:CDS | 40.0% | |
| !! | TAAGGTTGGTGGAAAGGAAA+AGG | - | chr7_4:3758255-3758274 | Msa1135920:CDS | 40.0% |
| CTACTTCACAAGCTTAAGAG+GGG | - | chr7_4:3758285-3758304 | Msa1135920:CDS | 40.0% | |
| ATGAAGATTGTTGCCAAGTG+AGG | - | chr7_4:3758320-3758339 | Msa1135920:CDS | 40.0% | |
| CTCTCAAAATCATCCTCACT+TGG | + | chr7_4:3758336-3758355 | None:intergenic | 40.0% | |
| ! | CAAGTGAGGATGATTTTGAG+AGG | - | chr7_4:3758334-3758353 | Msa1135920:CDS | 40.0% |
| !! | AGGATGATTTTGAGAGGGTT+AGG | - | chr7_4:3758340-3758359 | Msa1135920:CDS | 40.0% |
| ! | TTAGGTGATTTGTATGGTGG+AGG | - | chr7_4:3758427-3758446 | Msa1135920:CDS | 40.0% |
| GAATTACATTGGTGGAGTTG+AGG | - | chr7_4:3758477-3758496 | Msa1135920:CDS | 40.0% | |
| TGCCCGGATTGTAATGAAAA+TGG | - | chr7_4:3758721-3758740 | Msa1135920:CDS | 40.0% | |
| CTGTCATCTTCAGATTGAGG+TGG | + | chr7_4:3757572-3757591 | None:intergenic | 45.0% | |
| GCACTCACATCAACCACATT+AGG | - | chr7_4:3757605-3757624 | Msa1135920:CDS | 45.0% | |
| GGTTGATTGAGGCAAAGACT+TGG | - | chr7_4:3757861-3757880 | Msa1135920:CDS | 45.0% | |
| ! | GGTGTTCTTGTTGGTGTCTT+TGG | + | chr7_4:3757923-3757942 | None:intergenic | 45.0% |
| !! | ATTGTTTCTGGTTCACCAGG+TGG | + | chr7_4:3757944-3757963 | None:intergenic | 45.0% |
| TTTGATGTCAATGGCGGTGA+AGG | - | chr7_4:3758040-3758059 | Msa1135920:CDS | 45.0% | |
| !! | GGATGTTAAGGTTGGTGGAA+AGG | - | chr7_4:3758249-3758268 | Msa1135920:CDS | 45.0% |
| ! | GAGGAGCTAAGAGAGCTTTT+AGG | - | chr7_4:3758409-3758428 | Msa1135920:CDS | 45.0% |
| !! | AGTGGTGGATGTGAGAATTG+TGG | - | chr7_4:3758571-3758590 | Msa1135920:CDS | 45.0% |
| GATGATCATGGTCGTGAAGA+AGG | - | chr7_4:3758679-3758698 | Msa1135920:CDS | 45.0% | |
| CTGTCATCTTCAGATTGAGG+TGG | + | chr7_4:3757572-3757591 | None:intergenic | 45.0% | |
| GCACTCACATCAACCACATT+AGG | - | chr7_4:3757605-3757624 | Msa1135920:CDS | 45.0% | |
| GGTTGATTGAGGCAAAGACT+TGG | - | chr7_4:3757861-3757880 | Msa1135920:CDS | 45.0% | |
| ! | GGTGTTCTTGTTGGTGTCTT+TGG | + | chr7_4:3757923-3757942 | None:intergenic | 45.0% |
| !! | ATTGTTTCTGGTTCACCAGG+TGG | + | chr7_4:3757944-3757963 | None:intergenic | 45.0% |
| TTTGATGTCAATGGCGGTGA+AGG | - | chr7_4:3758040-3758059 | Msa1135920:CDS | 45.0% | |
| !! | GGATGTTAAGGTTGGTGGAA+AGG | - | chr7_4:3758249-3758268 | Msa1135920:CDS | 45.0% |
| ! | GAGGAGCTAAGAGAGCTTTT+AGG | - | chr7_4:3758409-3758428 | Msa1135920:CDS | 45.0% |
| !! | AGTGGTGGATGTGAGAATTG+TGG | - | chr7_4:3758571-3758590 | Msa1135920:CDS | 45.0% |
| GATGATCATGGTCGTGAAGA+AGG | - | chr7_4:3758679-3758698 | Msa1135920:CDS | 45.0% | |
| ACACCAACAAGAACACCACC+TGG | - | chr7_4:3757926-3757945 | Msa1135920:CDS | 50.0% | |
| TCACCAGGTGGTGTTCTTGT+TGG | + | chr7_4:3757932-3757951 | None:intergenic | 50.0% | |
| ! | AGGTGATTCGGCGATCGAAA+AGG | + | chr7_4:3758007-3758026 | None:intergenic | 50.0% |
| TGGTGGAGGAAGATTGCCAA+AGG | - | chr7_4:3758441-3758460 | Msa1135920:CDS | 50.0% | |
| ! | TGAAGATGGTGATGACGACG+AGG | - | chr7_4:3758648-3758667 | Msa1135920:CDS | 50.0% |
| GTTTGGATTCCAACGTTGCC+CGG | - | chr7_4:3758705-3758724 | Msa1135920:CDS | 50.0% | |
| CATTACAATCCGGGCAACGT+TGG | + | chr7_4:3758717-3758736 | None:intergenic | 50.0% | |
| ACACCAACAAGAACACCACC+TGG | - | chr7_4:3757926-3757945 | Msa1135920:CDS | 50.0% | |
| TCACCAGGTGGTGTTCTTGT+TGG | + | chr7_4:3757932-3757951 | None:intergenic | 50.0% | |
| ! | AGGTGATTCGGCGATCGAAA+AGG | + | chr7_4:3758007-3758026 | None:intergenic | 50.0% |
| TGGTGGAGGAAGATTGCCAA+AGG | - | chr7_4:3758441-3758460 | Msa1135920:CDS | 50.0% | |
| ! | TGAAGATGGTGATGACGACG+AGG | - | chr7_4:3758648-3758667 | Msa1135920:CDS | 50.0% |
| GTTTGGATTCCAACGTTGCC+CGG | - | chr7_4:3758705-3758724 | Msa1135920:CDS | 50.0% | |
| CATTACAATCCGGGCAACGT+TGG | + | chr7_4:3758717-3758736 | None:intergenic | 50.0% | |
| GGTCGTGAAGAAGGCGAGTT+TGG | - | chr7_4:3758688-3758707 | Msa1135920:CDS | 55.0% | |
| GGTCGTGAAGAAGGCGAGTT+TGG | - | chr7_4:3758688-3758707 | Msa1135920:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 3757476 | 3758774 | 3757476 | ID=Msa1135920;Name=Msa1135920 |
| chr7_4 | mRNA | 3757476 | 3758774 | 3757476 | ID=Msa1135920-mRNA-1;Parent=Msa1135920;Name=Msa1135920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|432 |
| chr7_4 | exon | 3757476 | 3758774 | 3757476 | ID=Msa1135920-mRNA-1:exon:1061;Parent=Msa1135920-mRNA-1 |
| chr7_4 | CDS | 3757476 | 3758774 | 3757476 | ID=Msa1135920-mRNA-1:cds;Parent=Msa1135920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
