AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169300 MtrunA17_Chr7g0263871 100.000 73 0 0 1 73 1 73 7.53e-47 143
Msa1169300 MtrunA17_Chr7g0263831 85.897 78 6 1 1 73 7 84 2.20e-18 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169300 AT2G37120.1 76.190 63 15 0 11 73 14 76 5.53e-15 63.2
Msa1169300 AT3G53370.1 80.000 60 12 0 14 73 17 76 1.77e-12 57.0

Find 29 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATTTGGGACAGGTTATT+TGG 0.128418 7_4:-62262320 Msa1169300:three_prime_UTR
TTGATTGTTCTCCTGGTTAT+TGG 0.231388 7_4:-62262638 Msa1169300:CDS
TAGTACTTTAGCAACATATT+TGG 0.242741 7_4:-62262334 Msa1169300:three_prime_UTR
AGTACTTTAGCAACATATTT+GGG 0.342721 7_4:-62262333 Msa1169300:three_prime_UTR
CCCAGGCTTGATTGTTCTCC+TGG 0.358351 7_4:-62262645 Msa1169300:CDS
CGTTTCAAACCTTTCTCTCT+CGG 0.372437 7_4:-62263885 Msa1169300:five_prime_UTR
TGGGGAAATGTTTAGAATGC+TGG 0.422488 7_4:-62262683 Msa1169300:intron
CGCGGAGAAGCTTCAAGCTA+TGG 0.466693 7_4:+62263823 None:intergenic
GTTTAGAATGCTGGATCTCA+AGG 0.468079 7_4:-62262674 Msa1169300:intron
GACTTGAATCCGAGAGAGAA+AGG 0.468305 7_4:+62263876 None:intergenic
ACCAGGAGAACAATCAAGCC+TGG 0.470447 7_4:+62262644 None:intergenic
ATTGTTCTCCTGGTTATTGG+TGG 0.489076 7_4:-62262635 Msa1169300:CDS
TTGCTGTTGACATTTCTCAT+TGG 0.497549 7_4:-62262611 Msa1169300:CDS
AAGCAAGGAGTCTCTGCACC+TGG 0.518649 7_4:-62262497 Msa1169300:CDS
AAGCTTCTCCGCGTCAACCA+TGG 0.519128 7_4:-62263813 Msa1169300:exon
TTTAGCAACATATTTGGGAC+AGG 0.520962 7_4:-62262328 Msa1169300:three_prime_UTR
AGTTGAAAATCGTAAGAAAG+AGG 0.533668 7_4:+62262271 None:intergenic
GTACAGTGCCTCTACTCTCC+AGG 0.535553 7_4:+62262479 None:intergenic
TCTGTCAATAAAACATAGGA+TGG 0.540133 7_4:+62262375 None:intergenic
TTGTTCTCCTGGTTATTGGT+GGG 0.546594 7_4:-62262634 Msa1169300:CDS
ATTTGGGACAGGTTATTTGG+TGG 0.553725 7_4:-62262317 Msa1169300:three_prime_UTR
ACTTTCTGTCAATAAAACAT+AGG 0.563705 7_4:+62262371 None:intergenic
GCTTTACGTTTATGCACAGA+AGG 0.577488 7_4:-62262579 Msa1169300:CDS
ACAGCAACCCACCAATAACC+AGG 0.598951 7_4:+62262627 None:intergenic
CCAGGAGAACAATCAAGCCT+GGG 0.608678 7_4:+62262645 None:intergenic
GGATCTCAAGGGTTCAACCC+AGG 0.613072 7_4:-62262662 Msa1169300:CDS
TTTAGAATGCTGGATCTCAA+GGG 0.619147 7_4:-62262673 Msa1169300:intron
TTTATCGGCCATGGTTGACG+CGG 0.638815 7_4:+62263805 None:intergenic
TCTCTGCACCTGGAGAGTAG+AGG 0.653251 7_4:-62262487 Msa1169300:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTATTCACATTT+AGG - chr7_4:62262623-62262642 Msa1169300:CDS 10.0%
!!! TTTTTTTTTTATTCACATTT+AGG - chr7_4:62262623-62262642 Msa1169300:CDS 10.0%
!! AAATAAATAATGAAGAATGT+GGG + chr7_4:62262428-62262447 None:intergenic 15.0%
!! AAAATAAATAATGAAGAATG+TGG + chr7_4:62262429-62262448 None:intergenic 15.0%
!! GATCTATTCATAATTAAATT+AGG - chr7_4:62262599-62262618 Msa1169300:CDS 15.0%
!! TTATTTGAGAATAACAATAA+GGG + chr7_4:62262990-62263009 None:intergenic 15.0%
!! CAATAAAAAAATATTTCCAA+AGG + chr7_4:62263399-62263418 None:intergenic 15.0%
!! AAATAAATAATGAAGAATGT+GGG + chr7_4:62262428-62262447 None:intergenic 15.0%
!! AAAATAAATAATGAAGAATG+TGG + chr7_4:62262429-62262448 None:intergenic 15.0%
!! GATCTATTCATAATTAAATT+AGG - chr7_4:62262599-62262618 Msa1169300:CDS 15.0%
!! TTATTTGAGAATAACAATAA+GGG + chr7_4:62262990-62263009 None:intergenic 15.0%
!! CAATAAAAAAATATTTCCAA+AGG + chr7_4:62263399-62263418 None:intergenic 15.0%
!! TGACAAAGAGAAAAAATAAA+CGG + chr7_4:62262303-62262322 None:intergenic 20.0%
!! TTTCAGATCTTAAAAATTCA+TGG - chr7_4:62262448-62262467 Msa1169300:three_prime_UTR 20.0%
!!! TTTTATTCACATTTAGGTTA+AGG - chr7_4:62262629-62262648 Msa1169300:CDS 20.0%
!! CTTATTTGAGAATAACAATA+AGG + chr7_4:62262991-62263010 None:intergenic 20.0%
!! AGATTCTACTTTGAATATAA+TGG - chr7_4:62263213-62263232 Msa1169300:intron 20.0%
!! GATTCTACTTTGAATATAAT+GGG - chr7_4:62263214-62263233 Msa1169300:intron 20.0%
!!! CAAAAAAAAGCACTTAAATA+AGG + chr7_4:62263442-62263461 None:intergenic 20.0%
!! TGACAAAGAGAAAAAATAAA+CGG + chr7_4:62262303-62262322 None:intergenic 20.0%
!! TTTCAGATCTTAAAAATTCA+TGG - chr7_4:62262448-62262467 Msa1169300:three_prime_UTR 20.0%
!!! TTTTATTCACATTTAGGTTA+AGG - chr7_4:62262629-62262648 Msa1169300:CDS 20.0%
!! CTTATTTGAGAATAACAATA+AGG + chr7_4:62262991-62263010 None:intergenic 20.0%
!! AGATTCTACTTTGAATATAA+TGG - chr7_4:62263213-62263232 Msa1169300:intron 20.0%
!! GATTCTACTTTGAATATAAT+GGG - chr7_4:62263214-62263233 Msa1169300:intron 20.0%
!!! CAAAAAAAAGCACTTAAATA+AGG + chr7_4:62263442-62263461 None:intergenic 20.0%
!!! GGAATTGATTTGAAGAAAAT+CGG + chr7_4:62262407-62262426 None:intergenic 25.0%
!!! TGCTTTATTAGACACTTTTA+AGG - chr7_4:62262702-62262721 Msa1169300:intron 25.0%
! AAAATGCATATGATAAAACC+TGG + chr7_4:62262946-62262965 None:intergenic 25.0%
! GGTTACAAATAACATCAATA+TGG + chr7_4:62262969-62262988 None:intergenic 25.0%
!!! TTAATTTGAGAGTGATTTTG+TGG + chr7_4:62263152-62263171 None:intergenic 25.0%
! CATATTACTATTTGCATACA+TGG - chr7_4:62263331-62263350 Msa1169300:intron 25.0%
!! TTTACATGTCAATTTTCCTT+TGG - chr7_4:62263380-62263399 Msa1169300:intron 25.0%
! CTCAAAAAAGAAGATGAAAA+AGG - chr7_4:62263624-62263643 Msa1169300:intron 25.0%
!!! CCAGAATTTTAAAAAGTACA+GGG + chr7_4:62263725-62263744 None:intergenic 25.0%
!!! ACCAGAATTTTAAAAAGTAC+AGG + chr7_4:62263726-62263745 None:intergenic 25.0%
!!! TTTTTAAAATTCTGGTTCTG+CGG - chr7_4:62263730-62263749 Msa1169300:intron 25.0%
! ACTTTCTGTCAATAAAACAT+AGG + chr7_4:62263784-62263803 None:intergenic 25.0%
! TAGTACTTTAGCAACATATT+TGG - chr7_4:62263818-62263837 Msa1169300:five_prime_UTR 25.0%
! AGTACTTTAGCAACATATTT+GGG - chr7_4:62263819-62263838 Msa1169300:five_prime_UTR 25.0%
!!! GGAATTGATTTGAAGAAAAT+CGG + chr7_4:62262407-62262426 None:intergenic 25.0%
!!! TGCTTTATTAGACACTTTTA+AGG - chr7_4:62262702-62262721 Msa1169300:intron 25.0%
! AAAATGCATATGATAAAACC+TGG + chr7_4:62262946-62262965 None:intergenic 25.0%
! GGTTACAAATAACATCAATA+TGG + chr7_4:62262969-62262988 None:intergenic 25.0%
!!! TTAATTTGAGAGTGATTTTG+TGG + chr7_4:62263152-62263171 None:intergenic 25.0%
! CATATTACTATTTGCATACA+TGG - chr7_4:62263331-62263350 Msa1169300:intron 25.0%
!! TTTACATGTCAATTTTCCTT+TGG - chr7_4:62263380-62263399 Msa1169300:intron 25.0%
! CTCAAAAAAGAAGATGAAAA+AGG - chr7_4:62263624-62263643 Msa1169300:intron 25.0%
!!! CCAGAATTTTAAAAAGTACA+GGG + chr7_4:62263725-62263744 None:intergenic 25.0%
!!! ACCAGAATTTTAAAAAGTAC+AGG + chr7_4:62263726-62263745 None:intergenic 25.0%
!!! TTTTTAAAATTCTGGTTCTG+CGG - chr7_4:62263730-62263749 Msa1169300:intron 25.0%
! ACTTTCTGTCAATAAAACAT+AGG + chr7_4:62263784-62263803 None:intergenic 25.0%
! TAGTACTTTAGCAACATATT+TGG - chr7_4:62263818-62263837 Msa1169300:five_prime_UTR 25.0%
! AGTACTTTAGCAACATATTT+GGG - chr7_4:62263819-62263838 Msa1169300:five_prime_UTR 25.0%
!!! TAATTTTTTACCTCCATCAC+TGG - chr7_4:62262547-62262566 Msa1169300:CDS 30.0%
!!! AATTTTTTACCTCCATCACT+GGG - chr7_4:62262548-62262567 Msa1169300:CDS 30.0%
TATGAATAGATCCACAAGTA+AGG + chr7_4:62262591-62262610 None:intergenic 30.0%
! TTAGATCATGATGATGATGA+TGG - chr7_4:62262812-62262831 Msa1169300:intron 30.0%
AACCATTCAACACAAATTGA+TGG + chr7_4:62262921-62262940 None:intergenic 30.0%
ATTCTCAAATAAGTCTGTGT+AGG - chr7_4:62262998-62263017 Msa1169300:intron 30.0%
! TTTTGTGGAGACATACAAAA+GGG + chr7_4:62263137-62263156 None:intergenic 30.0%
! ATTTTGTGGAGACATACAAA+AGG + chr7_4:62263138-62263157 None:intergenic 30.0%
ATTGCAGAGCAAATAAAGAA+TGG + chr7_4:62263310-62263329 None:intergenic 30.0%
!!! TGCTTTTTTTTGTTGCTCTT+GGG - chr7_4:62263450-62263469 Msa1169300:intron 30.0%
!!! TTCATCTTCTTTTTTGAGAC+TGG + chr7_4:62263622-62263641 None:intergenic 30.0%
AAAAGAAGATGAAAAAGGAG+AGG - chr7_4:62263629-62263648 Msa1169300:intron 30.0%
!! CTCTAATGTTTTGTTGAATG+TGG - chr7_4:62263695-62263714 Msa1169300:intron 30.0%
!!! CCCTGTACTTTTTAAAATTC+TGG - chr7_4:62263722-62263741 Msa1169300:intron 30.0%
TCTGTCAATAAAACATAGGA+TGG + chr7_4:62263780-62263799 None:intergenic 30.0%
AGTTGAAAATCGTAAGAAAG+AGG + chr7_4:62263884-62263903 None:intergenic 30.0%
!!! TAATTTTTTACCTCCATCAC+TGG - chr7_4:62262547-62262566 Msa1169300:CDS 30.0%
!!! AATTTTTTACCTCCATCACT+GGG - chr7_4:62262548-62262567 Msa1169300:CDS 30.0%
TATGAATAGATCCACAAGTA+AGG + chr7_4:62262591-62262610 None:intergenic 30.0%
! TTAGATCATGATGATGATGA+TGG - chr7_4:62262812-62262831 Msa1169300:intron 30.0%
AACCATTCAACACAAATTGA+TGG + chr7_4:62262921-62262940 None:intergenic 30.0%
ATTCTCAAATAAGTCTGTGT+AGG - chr7_4:62262998-62263017 Msa1169300:intron 30.0%
! TTTTGTGGAGACATACAAAA+GGG + chr7_4:62263137-62263156 None:intergenic 30.0%
! ATTTTGTGGAGACATACAAA+AGG + chr7_4:62263138-62263157 None:intergenic 30.0%
ATTGCAGAGCAAATAAAGAA+TGG + chr7_4:62263310-62263329 None:intergenic 30.0%
!!! TGCTTTTTTTTGTTGCTCTT+GGG - chr7_4:62263450-62263469 Msa1169300:intron 30.0%
!!! TTCATCTTCTTTTTTGAGAC+TGG + chr7_4:62263622-62263641 None:intergenic 30.0%
AAAAGAAGATGAAAAAGGAG+AGG - chr7_4:62263629-62263648 Msa1169300:intron 30.0%
!! CTCTAATGTTTTGTTGAATG+TGG - chr7_4:62263695-62263714 Msa1169300:intron 30.0%
!!! CCCTGTACTTTTTAAAATTC+TGG - chr7_4:62263722-62263741 Msa1169300:intron 30.0%
TCTGTCAATAAAACATAGGA+TGG + chr7_4:62263780-62263799 None:intergenic 30.0%
AGTTGAAAATCGTAAGAAAG+AGG + chr7_4:62263884-62263903 None:intergenic 30.0%
AGAAAATCGGATCTAAGAAG+AGG + chr7_4:62262394-62262413 None:intergenic 35.0%
AGGGCATAGAATATGAGAAA+GGG + chr7_4:62262490-62262509 None:intergenic 35.0%
! AAGGGCATAGAATATGAGAA+AGG + chr7_4:62262491-62262510 None:intergenic 35.0%
! TGAAAGTATGAACGAGCAAA+GGG + chr7_4:62262509-62262528 None:intergenic 35.0%
! TTGAAAGTATGAACGAGCAA+AGG + chr7_4:62262510-62262529 None:intergenic 35.0%
ATAACTGAAAAACCCAGTGA+TGG + chr7_4:62262563-62262582 None:intergenic 35.0%
AGTTATATACGCCTTACTTG+TGG - chr7_4:62262577-62262596 Msa1169300:CDS 35.0%
! TCAACACAAATTGATGGCAT+TGG + chr7_4:62262915-62262934 None:intergenic 35.0%
TGCCATCAATTTGTGTTGAA+TGG - chr7_4:62262916-62262935 Msa1169300:intron 35.0%
! TTTGTGTTGAATGGTTTTCC+AGG - chr7_4:62262925-62262944 Msa1169300:intron 35.0%
ATTGTATTGTACACGCGTTA+AGG - chr7_4:62263038-62263057 Msa1169300:intron 35.0%
! AAGTAGAATCTCTGATTTGC+AGG + chr7_4:62263204-62263223 None:intergenic 35.0%
! TTTGAAACAAAGGAGAGAAG+TGG + chr7_4:62263245-62263264 None:intergenic 35.0%
!! CCAGAGATTCTTTGAAACAA+AGG + chr7_4:62263255-62263274 None:intergenic 35.0%
! CCTTTGTTTCAAAGAATCTC+TGG - chr7_4:62263252-62263271 Msa1169300:intron 35.0%
!!! GTGCTTTTTTTTGTTGCTCT+TGG - chr7_4:62263449-62263468 Msa1169300:intron 35.0%
!!! GCTTTTTTTTGTTGCTCTTG+GGG - chr7_4:62263451-62263470 Msa1169300:intron 35.0%
! TTTAGAATGCTGGATCTCAA+GGG - chr7_4:62263479-62263498 Msa1169300:intron 35.0%
TTGATTGTTCTCCTGGTTAT+TGG - chr7_4:62263514-62263533 Msa1169300:intron 35.0%
! TTGCTGTTGACATTTCTCAT+TGG - chr7_4:62263541-62263560 Msa1169300:intron 35.0%
! TTTAGCAACATATTTGGGAC+AGG - chr7_4:62263824-62263843 Msa1169300:five_prime_UTR 35.0%
! CATATTTGGGACAGGTTATT+TGG - chr7_4:62263832-62263851 Msa1169300:five_prime_UTR 35.0%
AGAAAATCGGATCTAAGAAG+AGG + chr7_4:62262394-62262413 None:intergenic 35.0%
AGGGCATAGAATATGAGAAA+GGG + chr7_4:62262490-62262509 None:intergenic 35.0%
! AAGGGCATAGAATATGAGAA+AGG + chr7_4:62262491-62262510 None:intergenic 35.0%
! TGAAAGTATGAACGAGCAAA+GGG + chr7_4:62262509-62262528 None:intergenic 35.0%
! TTGAAAGTATGAACGAGCAA+AGG + chr7_4:62262510-62262529 None:intergenic 35.0%
ATAACTGAAAAACCCAGTGA+TGG + chr7_4:62262563-62262582 None:intergenic 35.0%
AGTTATATACGCCTTACTTG+TGG - chr7_4:62262577-62262596 Msa1169300:CDS 35.0%
! TCAACACAAATTGATGGCAT+TGG + chr7_4:62262915-62262934 None:intergenic 35.0%
TGCCATCAATTTGTGTTGAA+TGG - chr7_4:62262916-62262935 Msa1169300:intron 35.0%
! TTTGTGTTGAATGGTTTTCC+AGG - chr7_4:62262925-62262944 Msa1169300:intron 35.0%
ATTGTATTGTACACGCGTTA+AGG - chr7_4:62263038-62263057 Msa1169300:intron 35.0%
! AAGTAGAATCTCTGATTTGC+AGG + chr7_4:62263204-62263223 None:intergenic 35.0%
! TTTGAAACAAAGGAGAGAAG+TGG + chr7_4:62263245-62263264 None:intergenic 35.0%
!! CCAGAGATTCTTTGAAACAA+AGG + chr7_4:62263255-62263274 None:intergenic 35.0%
! CCTTTGTTTCAAAGAATCTC+TGG - chr7_4:62263252-62263271 Msa1169300:intron 35.0%
!!! GTGCTTTTTTTTGTTGCTCT+TGG - chr7_4:62263449-62263468 Msa1169300:intron 35.0%
!!! GCTTTTTTTTGTTGCTCTTG+GGG - chr7_4:62263451-62263470 Msa1169300:intron 35.0%
! TTTAGAATGCTGGATCTCAA+GGG - chr7_4:62263479-62263498 Msa1169300:intron 35.0%
TTGATTGTTCTCCTGGTTAT+TGG - chr7_4:62263514-62263533 Msa1169300:intron 35.0%
! TTGCTGTTGACATTTCTCAT+TGG - chr7_4:62263541-62263560 Msa1169300:intron 35.0%
! TTTAGCAACATATTTGGGAC+AGG - chr7_4:62263824-62263843 Msa1169300:five_prime_UTR 35.0%
! CATATTTGGGACAGGTTATT+TGG - chr7_4:62263832-62263851 Msa1169300:five_prime_UTR 35.0%
CGTTTCAAACCTTTCTCTCT+CGG - chr7_4:62262267-62262286 Msa1169300:three_prime_UTR 40.0%
AGAAGAGGAGAGAAGAATAC+CGG + chr7_4:62262379-62262398 None:intergenic 40.0%
GGGCATAGAATATGAGAAAG+GGG + chr7_4:62262489-62262508 None:intergenic 40.0%
! ATGATGGTGATACTGCAGAA+TGG - chr7_4:62262828-62262847 Msa1169300:intron 40.0%
GGGACTGTGAATCATAAATC+AGG + chr7_4:62263117-62263136 None:intergenic 40.0%
CATACATGGATGATTGTGAG+TGG - chr7_4:62263345-62263364 Msa1169300:intron 40.0%
! TGGGGAAATGTTTAGAATGC+TGG - chr7_4:62263469-62263488 Msa1169300:intron 40.0%
! GTTTAGAATGCTGGATCTCA+AGG - chr7_4:62263478-62263497 Msa1169300:intron 40.0%
ATTGTTCTCCTGGTTATTGG+TGG - chr7_4:62263517-62263536 Msa1169300:intron 40.0%
TTGTTCTCCTGGTTATTGGT+GGG - chr7_4:62263518-62263537 Msa1169300:intron 40.0%
GCTTTACGTTTATGCACAGA+AGG - chr7_4:62263573-62263592 Msa1169300:intron 40.0%
!!! CTGGCTTCTTTTTTCTAGGA+GGG + chr7_4:62263603-62263622 None:intergenic 40.0%
!!! ACTGGCTTCTTTTTTCTAGG+AGG + chr7_4:62263604-62263623 None:intergenic 40.0%
!!! GAGACTGGCTTCTTTTTTCT+AGG + chr7_4:62263607-62263626 None:intergenic 40.0%
! ATTTGGGACAGGTTATTTGG+TGG - chr7_4:62263835-62263854 Msa1169300:five_prime_UTR 40.0%
CGTTTCAAACCTTTCTCTCT+CGG - chr7_4:62262267-62262286 Msa1169300:three_prime_UTR 40.0%
AGAAGAGGAGAGAAGAATAC+CGG + chr7_4:62262379-62262398 None:intergenic 40.0%
GGGCATAGAATATGAGAAAG+GGG + chr7_4:62262489-62262508 None:intergenic 40.0%
! ATGATGGTGATACTGCAGAA+TGG - chr7_4:62262828-62262847 Msa1169300:intron 40.0%
GGGACTGTGAATCATAAATC+AGG + chr7_4:62263117-62263136 None:intergenic 40.0%
CATACATGGATGATTGTGAG+TGG - chr7_4:62263345-62263364 Msa1169300:intron 40.0%
! TGGGGAAATGTTTAGAATGC+TGG - chr7_4:62263469-62263488 Msa1169300:intron 40.0%
! GTTTAGAATGCTGGATCTCA+AGG - chr7_4:62263478-62263497 Msa1169300:intron 40.0%
ATTGTTCTCCTGGTTATTGG+TGG - chr7_4:62263517-62263536 Msa1169300:intron 40.0%
TTGTTCTCCTGGTTATTGGT+GGG - chr7_4:62263518-62263537 Msa1169300:intron 40.0%
GCTTTACGTTTATGCACAGA+AGG - chr7_4:62263573-62263592 Msa1169300:intron 40.0%
!!! CTGGCTTCTTTTTTCTAGGA+GGG + chr7_4:62263603-62263622 None:intergenic 40.0%
!!! ACTGGCTTCTTTTTTCTAGG+AGG + chr7_4:62263604-62263623 None:intergenic 40.0%
!!! GAGACTGGCTTCTTTTTTCT+AGG + chr7_4:62263607-62263626 None:intergenic 40.0%
! ATTTGGGACAGGTTATTTGG+TGG - chr7_4:62263835-62263854 Msa1169300:five_prime_UTR 40.0%
GACTTGAATCCGAGAGAGAA+AGG + chr7_4:62262279-62262298 None:intergenic 45.0%
AAGAGGAGAGAAGAATACCG+GGG + chr7_4:62262377-62262396 None:intergenic 45.0%
GAAGAGGAGAGAAGAATACC+GGG + chr7_4:62262378-62262397 None:intergenic 45.0%
! TATGAGAAAGGGGCATGCAA+GGG + chr7_4:62262479-62262498 None:intergenic 45.0%
! ATATGAGAAAGGGGCATGCA+AGG + chr7_4:62262480-62262499 None:intergenic 45.0%
ACTGAAAAACCCAGTGATGG+AGG + chr7_4:62262560-62262579 None:intergenic 45.0%
ACATGGATGATTGTGAGTGG+TGG - chr7_4:62263348-62263367 Msa1169300:intron 45.0%
AAAAAGGAGAGGCTGAAGCA+AGG - chr7_4:62263640-62263659 Msa1169300:intron 45.0%
GACTTGAATCCGAGAGAGAA+AGG + chr7_4:62262279-62262298 None:intergenic 45.0%
AAGAGGAGAGAAGAATACCG+GGG + chr7_4:62262377-62262396 None:intergenic 45.0%
GAAGAGGAGAGAAGAATACC+GGG + chr7_4:62262378-62262397 None:intergenic 45.0%
! TATGAGAAAGGGGCATGCAA+GGG + chr7_4:62262479-62262498 None:intergenic 45.0%
! ATATGAGAAAGGGGCATGCA+AGG + chr7_4:62262480-62262499 None:intergenic 45.0%
ACTGAAAAACCCAGTGATGG+AGG + chr7_4:62262560-62262579 None:intergenic 45.0%
ACATGGATGATTGTGAGTGG+TGG - chr7_4:62263348-62263367 Msa1169300:intron 45.0%
AAAAAGGAGAGGCTGAAGCA+AGG - chr7_4:62263640-62263659 Msa1169300:intron 45.0%
TTTATCGGCCATGGTTGACG+CGG + chr7_4:62262350-62262369 None:intergenic 50.0%
GAATACCGGGGGGACTTTAT+CGG + chr7_4:62262365-62262384 None:intergenic 50.0%
AGAGGAGAGAAGAATACCGG+GGG + chr7_4:62262376-62262395 None:intergenic 50.0%
CCAGGAGAACAATCAAGCCT+GGG + chr7_4:62263510-62263529 None:intergenic 50.0%
ACCAGGAGAACAATCAAGCC+TGG + chr7_4:62263511-62263530 None:intergenic 50.0%
ACAGCAACCCACCAATAACC+AGG + chr7_4:62263528-62263547 None:intergenic 50.0%
TTTATCGGCCATGGTTGACG+CGG + chr7_4:62262350-62262369 None:intergenic 50.0%
GAATACCGGGGGGACTTTAT+CGG + chr7_4:62262365-62262384 None:intergenic 50.0%
AGAGGAGAGAAGAATACCGG+GGG + chr7_4:62262376-62262395 None:intergenic 50.0%
CCAGGAGAACAATCAAGCCT+GGG + chr7_4:62263510-62263529 None:intergenic 50.0%
ACCAGGAGAACAATCAAGCC+TGG + chr7_4:62263511-62263530 None:intergenic 50.0%
ACAGCAACCCACCAATAACC+AGG + chr7_4:62263528-62263547 None:intergenic 50.0%
CGCGGAGAAGCTTCAAGCTA+TGG + chr7_4:62262332-62262351 None:intergenic 55.0%
AAGCTTCTCCGCGTCAACCA+TGG - chr7_4:62262339-62262358 Msa1169300:three_prime_UTR 55.0%
GAGGAGAGAAGAATACCGGG+GGG + chr7_4:62262375-62262394 None:intergenic 55.0%
GGATCTCAAGGGTTCAACCC+AGG - chr7_4:62263490-62263509 Msa1169300:intron 55.0%
CCCAGGCTTGATTGTTCTCC+TGG - chr7_4:62263507-62263526 Msa1169300:intron 55.0%
AAGCAAGGAGTCTCTGCACC+TGG - chr7_4:62263655-62263674 Msa1169300:intron 55.0%
TCTCTGCACCTGGAGAGTAG+AGG - chr7_4:62263665-62263684 Msa1169300:intron 55.0%
GTACAGTGCCTCTACTCTCC+AGG + chr7_4:62263676-62263695 None:intergenic 55.0%
CGCGGAGAAGCTTCAAGCTA+TGG + chr7_4:62262332-62262351 None:intergenic 55.0%
AAGCTTCTCCGCGTCAACCA+TGG - chr7_4:62262339-62262358 Msa1169300:three_prime_UTR 55.0%
GAGGAGAGAAGAATACCGGG+GGG + chr7_4:62262375-62262394 None:intergenic 55.0%
GGATCTCAAGGGTTCAACCC+AGG - chr7_4:62263490-62263509 Msa1169300:intron 55.0%
CCCAGGCTTGATTGTTCTCC+TGG - chr7_4:62263507-62263526 Msa1169300:intron 55.0%
AAGCAAGGAGTCTCTGCACC+TGG - chr7_4:62263655-62263674 Msa1169300:intron 55.0%
TCTCTGCACCTGGAGAGTAG+AGG - chr7_4:62263665-62263684 Msa1169300:intron 55.0%
GTACAGTGCCTCTACTCTCC+AGG + chr7_4:62263676-62263695 None:intergenic 55.0%
CATGGCCGATAAAGTCCCCC+CGG - chr7_4:62262357-62262376 Msa1169300:three_prime_UTR 60.0%
CATGGCCGATAAAGTCCCCC+CGG - chr7_4:62262357-62262376 Msa1169300:three_prime_UTR 60.0%
CGGGGGGACTTTATCGGCCA+TGG + chr7_4:62262359-62262378 None:intergenic 65.0%
CGGGGGGACTTTATCGGCCA+TGG + chr7_4:62262359-62262378 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 62262245 62263929 62262245 ID=Msa1169300;Name=Msa1169300
chr7_4 mRNA 62262245 62263929 62262245 ID=Msa1169300-mRNA-1;Parent=Msa1169300;Name=Msa1169300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|1|1|2|245|73
chr7_4 exon 62262245 62262690 62262245 ID=Msa1169300-mRNA-1:exon:19715;Parent=Msa1169300-mRNA-1
chr7_4 exon 62263796 62263929 62263796 ID=Msa1169300-mRNA-1:exon:19714;Parent=Msa1169300-mRNA-1
chr7_4 five_prime_UTR 62263817 62263929 62263817 ID=Msa1169300-mRNA-1:five_prime_utr;Parent=Msa1169300-mRNA-1
chr7_4 CDS 62263796 62263816 62263796 ID=Msa1169300-mRNA-1:cds;Parent=Msa1169300-mRNA-1
chr7_4 CDS 62262490 62262690 62262490 ID=Msa1169300-mRNA-1:cds;Parent=Msa1169300-mRNA-1
chr7_4 three_prime_UTR 62262245 62262489 62262245 ID=Msa1169300-mRNA-1:three_prime_utr;Parent=Msa1169300-mRNA-1
Gene Sequence

>Msa1169300

ATGGCCGATAAAGTCCCCCCGAATGCTGGATCTCAAGGGTTCAACCCAGGCTTGATTGTTCTCCTGGTTATTGGTGGGTTGCTGTTGACATTTCTCATTGGAAATTATGCGCTTTACGTTTATGCACAGAAGGCTCTCCCTCCTAGAAAAAAGAAGCCAGTCTCAAAAAAGAAGATGAAAAAGGAGAGGCTGAAGCAAGGAGTCTCTGCACCTGGAGAGTAG
Protein sequence

>Msa1169300

MADKVPPNAGSQGFNPGLIVLLVIGGLLLTFLIGNYALYVYAQKALPPRKKKPVSKKKMKKERLKQGVSAPGE*