Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280660 | XP_003594786.1 | 99.600 | 250 | 1 | 0 | 1 | 250 | 1 | 250 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280660 | sp|Q8MR62|VIAF1_DROME | 36.979 | 192 | 108 | 3 | 56 | 246 | 59 | 238 | 2.83e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280660 | G7IMU2 | 99.600 | 250 | 1 | 0 | 1 | 250 | 1 | 250 | 0.0 | 512 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039420 | Msa0280660 | 0.828284 | 9.790936e-55 | -8.615850e-47 |
| Msa0072000 | Msa0280660 | -0.805250 | 1.461500e-49 | -8.615850e-47 |
| Msa0105340 | Msa0280660 | -0.802419 | 5.661713e-49 | -8.615850e-47 |
| Msa0178350 | Msa0280660 | -0.813614 | 2.340873e-51 | -8.615850e-47 |
| Msa0185640 | Msa0280660 | 0.834903 | 2.289950e-56 | -8.615850e-47 |
| Msa0198440 | Msa0280660 | -0.801846 | 7.426339e-49 | -8.615850e-47 |
| Msa0215320 | Msa0280660 | 0.808825 | 2.560887e-50 | -8.615850e-47 |
| Msa0226250 | Msa0280660 | -0.861741 | 8.291336e-64 | -8.615850e-47 |
| Msa0256500 | Msa0280660 | 0.811020 | 8.627446e-51 | -8.615850e-47 |
| Msa0258670 | Msa0280660 | 0.814788 | 1.288861e-51 | -8.615850e-47 |
| Msa0260270 | Msa0280660 | 0.812880 | 3.392866e-51 | -8.615850e-47 |
| Msa0265980 | Msa0280660 | 0.809450 | 1.880549e-50 | -8.615850e-47 |
| Msa0270440 | Msa0280660 | 0.809429 | 1.900553e-50 | -8.615850e-47 |
| Msa0278670 | Msa0280660 | -0.802870 | 4.569688e-49 | -8.615850e-47 |
| Msa0280660 | Msa0295640 | 0.826360 | 2.831468e-54 | -8.615850e-47 |
| Msa0280660 | Msa0304740 | -0.818889 | 1.548218e-52 | -8.615850e-47 |
| Msa0280660 | Msa0309080 | 0.806142 | 9.496704e-50 | -8.615850e-47 |
| Msa0280660 | Msa0331590 | -0.824544 | 7.621186e-54 | -8.615850e-47 |
| Msa0280660 | Msa0342340 | 0.833869 | 4.162586e-56 | -8.615850e-47 |
| Msa0280660 | Msa0371420 | 0.805226 | 1.478461e-49 | -8.615850e-47 |
| Msa0280660 | Msa0389360 | -0.807709 | 4.426883e-50 | -8.615850e-47 |
| Msa0280660 | Msa0405660 | 0.811845 | 5.711094e-51 | -8.615850e-47 |
| Msa0280660 | Msa0414070 | -0.815234 | 1.026132e-51 | -8.615850e-47 |
| Msa0280660 | Msa0419620 | 0.816821 | 4.538751e-52 | -8.615850e-47 |
| Msa0280660 | Msa0442850 | -0.810847 | 9.405161e-51 | -8.615850e-47 |
| Msa0280660 | Msa0457010 | -0.801586 | 8.394872e-49 | -8.615850e-47 |
| Msa0280660 | Msa0465680 | 0.857110 | 2.040846e-62 | -8.615850e-47 |
| Msa0280660 | Msa0492870 | -0.805963 | 1.035605e-49 | -8.615850e-47 |
| Msa0280660 | Msa0524890 | 0.855594 | 5.679760e-62 | -8.615850e-47 |
| Msa0280660 | Msa0524970 | 0.823378 | 1.430913e-53 | -8.615850e-47 |
| Msa0280660 | Msa0527250 | -0.810334 | 1.213695e-50 | -8.615850e-47 |
| Msa0280660 | Msa0543900 | -0.809517 | 1.820063e-50 | -8.615850e-47 |
| Msa0280660 | Msa0548280 | 0.829002 | 6.566169e-55 | -8.615850e-47 |
| Msa0280660 | Msa0563140 | -0.806411 | 8.333531e-50 | -8.615850e-47 |
| Msa0280660 | Msa0564510 | -0.801202 | 1.006592e-48 | -8.615850e-47 |
| Msa0280660 | Msa0571250 | -0.818428 | 1.970760e-52 | -8.615850e-47 |
| Msa0280660 | Msa0576990 | 0.855782 | 5.006673e-62 | -8.615850e-47 |
| Msa0280660 | Msa0583930 | -0.804556 | 2.040977e-49 | -8.615850e-47 |
| Msa0280660 | Msa0583940 | -0.806667 | 7.360772e-50 | -8.615850e-47 |
| Msa0280660 | Msa0617560 | 0.845732 | 3.380951e-59 | -8.615850e-47 |
| Msa0280660 | Msa0621890 | -0.816505 | 5.342983e-52 | -8.615850e-47 |
| Msa0280660 | Msa0640380 | -0.809136 | 2.196036e-50 | -8.615850e-47 |
| Msa0280660 | Msa0647450 | 0.808260 | 3.379490e-50 | -8.615850e-47 |
| Msa0280660 | Msa0655990 | 0.810886 | 9.221335e-51 | -8.615850e-47 |
| Msa0280660 | Msa0669990 | -0.816090 | 6.613879e-52 | -8.615850e-47 |
| Msa0280660 | Msa0678820 | -0.806026 | 1.004631e-49 | -8.615850e-47 |
| Msa0280660 | Msa0697140 | -0.802268 | 6.080175e-49 | -8.615850e-47 |
| Msa0280660 | Msa0699920 | 0.814817 | 1.269948e-51 | -8.615850e-47 |
| Msa0280660 | Msa0701840 | 0.802589 | 5.222218e-49 | -8.615850e-47 |
| Msa0280660 | Msa0715720 | -0.841604 | 4.296164e-58 | -8.615850e-47 |
| Msa0280660 | Msa0719490 | 0.826424 | 2.733446e-54 | -8.615850e-47 |
| Msa0280660 | Msa0722930 | -0.836582 | 8.601696e-57 | -8.615850e-47 |
| Msa0280660 | Msa0723140 | -0.824582 | 7.467271e-54 | -8.615850e-47 |
| Msa0280660 | Msa0723210 | -0.821187 | 4.612542e-53 | -8.615850e-47 |
| Msa0280660 | Msa0750380 | -0.801974 | 6.988505e-49 | -8.615850e-47 |
| Msa0280660 | Msa0756630 | 0.812542 | 4.022463e-51 | -8.615850e-47 |
| Msa0280660 | Msa0778580 | -0.807993 | 3.852093e-50 | -8.615850e-47 |
| Msa0280660 | Msa0789270 | -0.801539 | 8.585569e-49 | -8.615850e-47 |
| Msa0280660 | Msa0789280 | -0.804165 | 2.462507e-49 | -8.615850e-47 |
| Msa0280660 | Msa0789290 | -0.809307 | 2.018366e-50 | -8.615850e-47 |
| Msa0280660 | Msa0789300 | -0.809243 | 2.083400e-50 | -8.615850e-47 |
| Msa0280660 | Msa0802470 | 0.816054 | 6.739459e-52 | -8.615850e-47 |
| Msa0280660 | Msa0844900 | -0.805293 | 1.431887e-49 | -8.615850e-47 |
| Msa0280660 | Msa0847200 | -0.819444 | 1.157729e-52 | -8.615850e-47 |
| Msa0280660 | Msa0891040 | -0.821322 | 4.295254e-53 | -8.615850e-47 |
| Msa0280660 | Msa0902140 | -0.805443 | 1.331723e-49 | -8.615850e-47 |
| Msa0280660 | Msa0927840 | 0.803597 | 3.231926e-49 | -8.615850e-47 |
| Msa0280660 | Msa0946120 | -0.813479 | 2.506662e-51 | -8.615850e-47 |
| Msa0280660 | Msa0951720 | -0.837331 | 5.535688e-57 | -8.615850e-47 |
| Msa0280660 | Msa0961420 | 0.854374 | 1.284423e-61 | -8.615850e-47 |
| Msa0280660 | Msa0965520 | -0.806314 | 8.734373e-50 | -8.615850e-47 |
| Msa0280660 | Msa0988500 | -0.818185 | 2.237094e-52 | -8.615850e-47 |
| Msa0280660 | Msa0990960 | -0.819235 | 1.291842e-52 | -8.615850e-47 |
| Msa0280660 | Msa0999960 | 0.813938 | 1.986636e-51 | -8.615850e-47 |
| Msa0280660 | Msa1000020 | -0.835271 | 1.849628e-56 | -8.615850e-47 |
| Msa0280660 | Msa1019840 | 0.815942 | 7.139184e-52 | -8.615850e-47 |
| Msa0280660 | Msa1036390 | -0.821650 | 3.607846e-53 | -8.615850e-47 |
| Msa0280660 | Msa1037700 | 0.806444 | 8.201353e-50 | -8.615850e-47 |
| Msa0280660 | Msa1054410 | -0.813403 | 2.605791e-51 | -8.615850e-47 |
| Msa0280660 | Msa1068200 | 0.814899 | 1.217970e-51 | -8.615850e-47 |
| Msa0280660 | Msa1075080 | 0.813723 | 2.216000e-51 | -8.615850e-47 |
| Msa0280660 | Msa1075220 | 0.812046 | 5.162024e-51 | -8.615850e-47 |
| Msa0280660 | Msa1076680 | -0.812069 | 5.104557e-51 | -8.615850e-47 |
| Msa0280660 | Msa1077390 | -0.829308 | 5.536451e-55 | -8.615850e-47 |
| Msa0280660 | Msa1080790 | -0.800845 | 1.190701e-48 | -8.615850e-47 |
| Msa0280660 | Msa1083410 | -0.822589 | 2.184768e-53 | -8.615850e-47 |
| Msa0280660 | Msa1085960 | 0.853763 | 1.926934e-61 | -8.615850e-47 |
| Msa0280660 | Msa1087530 | -0.817414 | 3.339266e-52 | -8.615850e-47 |
| Msa0280660 | Msa1118930 | -0.803568 | 3.276948e-49 | -8.615850e-47 |
| Msa0280660 | Msa1128160 | -0.805346 | 1.395557e-49 | -8.615850e-47 |
| Msa0280660 | Msa1131940 | 0.810691 | 1.016316e-50 | -8.615850e-47 |
| Msa0280660 | Msa1156340 | 0.821618 | 3.668775e-53 | -8.615850e-47 |
| Msa0280660 | Msa1162550 | 0.806749 | 7.072184e-50 | -8.615850e-47 |
| Msa0280660 | Msa1165360 | -0.806670 | 7.350420e-50 | -8.615850e-47 |
| Msa0280660 | Msa1169300 | 0.814843 | 1.252920e-51 | -8.615850e-47 |
| Msa0280660 | Msa1169330 | 0.823090 | 1.669780e-53 | -8.615850e-47 |
| Msa0280660 | Msa1204980 | 0.836214 | 1.066957e-56 | -8.615850e-47 |
| Msa0280660 | Msa1205010 | 0.838941 | 2.132354e-57 | -8.615850e-47 |
| Msa0280660 | Msa1217810 | -0.810520 | 1.106873e-50 | -8.615850e-47 |
| Msa0280660 | Msa1256540 | 0.835106 | 2.035726e-56 | -8.615850e-47 |
| Msa0280660 | Msa1257870 | 0.830020 | 3.715015e-55 | -8.615850e-47 |
| Msa0280660 | Msa1265960 | -0.807220 | 5.622859e-50 | -8.615850e-47 |
| Msa0280660 | Msa1271200 | -0.805404 | 1.356916e-49 | -8.615850e-47 |
| Msa0280660 | Msa1296960 | 0.841664 | 4.143814e-58 | -8.615850e-47 |
| Msa0280660 | Msa1308480 | -0.814324 | 1.632794e-51 | -8.615850e-47 |
| Msa0280660 | Msa1308590 | -0.801191 | 1.011715e-48 | -8.615850e-47 |
| Msa0280660 | Msa1308640 | -0.807312 | 5.375374e-50 | -8.615850e-47 |
| Msa0280660 | Msa1335860 | -0.807381 | 5.196831e-50 | -8.615850e-47 |
| Msa0280660 | Msa1369530 | -0.809223 | 2.103864e-50 | -8.615850e-47 |
| Msa0280660 | Msa1371580 | -0.810459 | 1.140826e-50 | -8.615850e-47 |
| Msa0280660 | Msa1379710 | -0.809613 | 1.735035e-50 | -8.615850e-47 |
| Msa0280660 | Msa1384120 | 0.845694 | 3.461719e-59 | -8.615850e-47 |
| Msa0280660 | Msa1386520 | -0.818205 | 2.213386e-52 | -8.615850e-47 |
| Msa0280660 | Msa1431000 | -0.806469 | 8.101564e-50 | -8.615850e-47 |
| Msa0280660 | Msa1451620 | 0.832966 | 6.991438e-56 | -8.615850e-47 |
| Msa0280660 | Msa1458550 | -0.801095 | 1.058569e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280660 | MtrunA17_Chr2g0294681 | 99.600 | 250 | 1 | 0 | 1 | 250 | 1 | 250 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280660 | AT5G14240.1 | 70.683 | 249 | 70 | 2 | 1 | 246 | 1 | 249 | 1.89e-124 | 354 |
Find 89 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAGGCTCCATCTGATGTT+TGG | 0.202155 | 2_3:-15510724 | Msa0280660:CDS |
| TTCAAGTTCATCACTGGTTT+TGG | 0.232911 | 2_3:+15512563 | None:intergenic |
| ACTTTGTTGGTTTACAATAA+TGG | 0.237353 | 2_3:-15510465 | Msa0280660:CDS |
| GGATCAGTGACTCCCATTTC+AGG | 0.279382 | 2_3:-15510770 | Msa0280660:CDS |
| AACTACACACAAGATTCTTT+TGG | 0.296475 | 2_3:+15508981 | None:intergenic |
| TTACAATAATGGAGCTGTTA+AGG | 0.325996 | 2_3:-15510454 | Msa0280660:CDS |
| GCAGGCTCCATCTGATGTTT+GGG | 0.354810 | 2_3:-15510723 | Msa0280660:CDS |
| AGGAGGAAGATTGCCAAGTT+TGG | 0.357140 | 2_3:+15512668 | None:intergenic |
| ATGTTGAGTACCTGTATTCT+TGG | 0.361160 | 2_3:+15512505 | None:intergenic |
| TTATCCTTGGGAATGGAATC+AGG | 0.361461 | 2_3:+15512600 | None:intergenic |
| TACAATAATGGAGCTGTTAA+GGG | 0.381574 | 2_3:-15510453 | Msa0280660:CDS |
| AGATTACAATCCGGGTAGTT+AGG | 0.393382 | 2_3:+15510492 | None:intergenic |
| TTGCATCAACACCCCACATT+CGG | 0.409327 | 2_3:+15510584 | None:intergenic |
| TCGATCCATGATTTATCCTT+GGG | 0.409923 | 2_3:+15512588 | None:intergenic |
| AGAGAAATTGTGTGTGAAAC+CGG | 0.413470 | 2_3:+15512835 | None:intergenic |
| TTGTAATCTTCCTACTTTGT+TGG | 0.414641 | 2_3:-15510478 | Msa0280660:CDS |
| TGCATCAACACCCCACATTC+GGG | 0.418931 | 2_3:+15510585 | None:intergenic |
| GGTTTGAAAGCTGGTTGCTT+AGG | 0.421881 | 2_3:+15512648 | None:intergenic |
| TACCTTCAGGAGTGCATCTT+CGG | 0.424489 | 2_3:+15510403 | None:intergenic |
| ATCGATCCATGATTTATCCT+TGG | 0.424921 | 2_3:+15512587 | None:intergenic |
| AACGAAATCAGATCCTGAAA+TGG | 0.429428 | 2_3:+15510757 | None:intergenic |
| TCAAGACAAGCCGTCATTGA+TGG | 0.436184 | 2_3:-15509215 | Msa0280660:CDS |
| GATGCAATGCATTGAGGAAC+TGG | 0.438630 | 2_3:-15510568 | Msa0280660:CDS |
| TTGATTCCTCATCTCTGCTC+TGG | 0.441877 | 2_3:+15509234 | None:intergenic |
| GAAATTATGTGGGCATGAAA+AGG | 0.443802 | 2_3:-15510431 | Msa0280660:CDS |
| AAAGGTGCGGGTTTGAAAGC+TGG | 0.446779 | 2_3:+15512639 | None:intergenic |
| TTGTCATTCTTTACAAAGAC+GGG | 0.448141 | 2_3:-15510697 | Msa0280660:intron |
| TATGTGGGCATGAAAAGGTT+TGG | 0.449998 | 2_3:-15510426 | Msa0280660:CDS |
| CATCATCAAGATCATCTTCA+AGG | 0.452034 | 2_3:+15512538 | None:intergenic |
| AAGTGAAACAATACATTTGT+GGG | 0.454958 | 2_3:-15509030 | Msa0280660:three_prime_UTR |
| TAGAAGGTTCCTCTACTCAA+TGG | 0.463004 | 2_3:-15512704 | Msa0280660:CDS |
| AAGGTCTTCAAGTTCATCAC+TGG | 0.467993 | 2_3:+15512557 | None:intergenic |
| TTCATATACAAAGATCTAGA+AGG | 0.476584 | 2_3:-15512720 | Msa0280660:CDS |
| ATGGAATCAGGATCAGTGGC+GGG | 0.483736 | 2_3:+15512612 | None:intergenic |
| CCATGATTTATCCTTGGGAA+TGG | 0.486470 | 2_3:+15512593 | None:intergenic |
| TTGAAAGCTGGTTGCTTAGG+AGG | 0.492213 | 2_3:+15512651 | None:intergenic |
| AATTCATACTAGTATTTAGC+CGG | 0.496356 | 2_3:-15512854 | Msa0280660:five_prime_UTR |
| ACGAAATCAGATCCTGAAAT+GGG | 0.497458 | 2_3:+15510758 | None:intergenic |
| GAAGTAAAACACAACACAAT+GGG | 0.499551 | 2_3:-15512753 | Msa0280660:exon |
| CTCGCGCGACGGAGTAAGAA+AGG | 0.500202 | 2_3:-15512792 | Msa0280660:five_prime_UTR |
| ATCGCTTCCTCCAAGAATAC+AGG | 0.502343 | 2_3:-15512515 | Msa0280660:intron |
| CTTTCTTACTCCGTCGCGCG+AGG | 0.504769 | 2_3:+15512793 | None:intergenic |
| AGAAGGTTCCTCTACTCAAT+GGG | 0.509413 | 2_3:-15512703 | Msa0280660:CDS |
| CTCTGGCCATCATTAAGTAC+AGG | 0.512172 | 2_3:+15509251 | None:intergenic |
| TTGAGTACCTGTATTCTTGG+AGG | 0.512898 | 2_3:+15512508 | None:intergenic |
| AAAGTAGGAAGATTACAATC+CGG | 0.518629 | 2_3:+15510483 | None:intergenic |
| AAGTAGGAAGATTACAATCC+GGG | 0.522922 | 2_3:+15510484 | None:intergenic |
| CCATTCCCAAGGATAAATCA+TGG | 0.524568 | 2_3:-15512593 | Msa0280660:CDS |
| TTGACAGGATTCCCGAATGT+GGG | 0.527489 | 2_3:-15510596 | Msa0280660:intron |
| TCAGATCCTGTACTTAATGA+TGG | 0.527646 | 2_3:-15509257 | Msa0280660:CDS |
| GATGATATTCAAGCCAAACT+TGG | 0.530260 | 2_3:-15512681 | Msa0280660:CDS |
| CATTAAGTACAGGATCTGAT+TGG | 0.532522 | 2_3:+15509261 | None:intergenic |
| TGATCCATACCTCAAAACTT+TGG | 0.533110 | 2_3:+15510787 | None:intergenic |
| AGCTGTTAAGGGAAATTATG+TGG | 0.533643 | 2_3:-15510442 | Msa0280660:CDS |
| TTTCTTACTCCGTCGCGCGA+GGG | 0.548696 | 2_3:+15512794 | None:intergenic |
| GGAATCAGGATCAGTGGCGG+GGG | 0.552679 | 2_3:+15512614 | None:intergenic |
| GTTGTCATTCTTTACAAAGA+CGG | 0.553891 | 2_3:-15510698 | Msa0280660:CDS |
| AATGGAATCAGGATCAGTGG+CGG | 0.556391 | 2_3:+15512611 | None:intergenic |
| TTTGACAGGATTCCCGAATG+TGG | 0.558523 | 2_3:-15510597 | Msa0280660:intron |
| ACAACAACCCAAACATCAGA+TGG | 0.566005 | 2_3:+15510716 | None:intergenic |
| TTTGGGAGCAAAGTTGTGGA+AGG | 0.566321 | 2_3:+15508999 | None:intergenic |
| GGCCGAAGATGCACTCCTGA+AGG | 0.571581 | 2_3:-15510405 | Msa0280660:intron |
| CGTAGCTGATCATGAAGAGA+AGG | 0.576002 | 2_3:-15509165 | Msa0280660:CDS |
| GTACAGGATCTGATTGGCAC+AGG | 0.578533 | 2_3:+15509267 | None:intergenic |
| AGGATCTGATTTCGTTCGAG+AGG | 0.579453 | 2_3:-15510750 | Msa0280660:CDS |
| TTATTGTAAACCAACAAAGT+AGG | 0.579740 | 2_3:+15510468 | None:intergenic |
| AACATGTATCCAAATAGGAA+AGG | 0.589367 | 2_3:+15509085 | None:intergenic |
| ACTCTCTTTCCCTCGCGCGA+CGG | 0.590113 | 2_3:-15512803 | Msa0280660:five_prime_UTR |
| GAAGTGAAACAATACATTTG+TGG | 0.591460 | 2_3:-15509031 | Msa0280660:three_prime_UTR |
| GAAAGGCGAACACACGGTGG+TGG | 0.592985 | 2_3:-15512775 | Msa0280660:five_prime_UTR |
| TGATCCTGATTCCATTCCCA+AGG | 0.603648 | 2_3:-15512604 | Msa0280660:CDS |
| TTTGCTGTGATAGAAAGAAG+AGG | 0.611059 | 2_3:-15510832 | Msa0280660:intron |
| TGATTGCATTCCTAACTACC+CGG | 0.614134 | 2_3:-15510502 | Msa0280660:CDS |
| TGGAATCAGGATCAGTGGCG+GGG | 0.615265 | 2_3:+15512613 | None:intergenic |
| TGACAGGATTCCCGAATGTG+GGG | 0.623328 | 2_3:-15510595 | Msa0280660:intron |
| TTTCGTTCGAGAGGTTTCGC+AGG | 0.623986 | 2_3:-15510741 | Msa0280660:CDS |
| CTTGCGAACTCCATCAATGA+CGG | 0.628030 | 2_3:+15509205 | None:intergenic |
| GGAAGTAAAACACAACACAA+TGG | 0.630357 | 2_3:-15512754 | Msa0280660:exon |
| TCATTGATGGAGTTCGCAAG+AGG | 0.631572 | 2_3:-15509202 | Msa0280660:CDS |
| GCTGTTAAGGGAAATTATGT+GGG | 0.632603 | 2_3:-15510441 | Msa0280660:CDS |
| GGGAATGGAATCAGGATCAG+TGG | 0.634258 | 2_3:+15512608 | None:intergenic |
| TGATGGCCAGAGCAGAGATG+AGG | 0.639345 | 2_3:-15509240 | Msa0280660:CDS |
| AATATCATCCCATTGAGTAG+AGG | 0.640398 | 2_3:+15512695 | None:intergenic |
| GAGGTTAGCTGAGATACAAG+AGG | 0.647046 | 2_3:-15510813 | Msa0280660:CDS |
| GAGTAAGAAAGGCGAACACA+CGG | 0.655635 | 2_3:-15512781 | Msa0280660:five_prime_UTR |
| GTAGTTAGGAATGCAATCAG+TGG | 0.662668 | 2_3:+15510506 | None:intergenic |
| AGTGAAACAATACATTTGTG+GGG | 0.664410 | 2_3:-15509029 | Msa0280660:three_prime_UTR |
| GGTGTTGATGCAATGCATTG+AGG | 0.715735 | 2_3:-15510574 | Msa0280660:CDS |
| TAAGAAAGGCGAACACACGG+TGG | 0.793850 | 2_3:-15512778 | Msa0280660:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATTTTAATTTTTTTTATG+TGG | - | chr2_3:15509231-15509250 | Msa0280660:CDS | 10.0% |
| !!! | TCATTTTGTAAAATAATTTA+AGG | - | chr2_3:15511759-15511778 | Msa0280660:intron | 10.0% |
| !!! | TGTGATTTTTTTTTTTTATG+TGG | - | chr2_3:15509361-15509380 | Msa0280660:intron | 15.0% |
| !!! | TTTTTCTTCTTTTCTTATTT+TGG | - | chr2_3:15509501-15509520 | Msa0280660:intron | 15.0% |
| !! | AATCAAAATTCTAATATGTT+TGG | - | chr2_3:15509576-15509595 | Msa0280660:intron | 15.0% |
| !! | ATCAAAATTCTAATATGTTT+GGG | - | chr2_3:15509577-15509596 | Msa0280660:intron | 15.0% |
| !!! | TTTCCGATTTTTTTTTTATT+TGG | - | chr2_3:15510021-15510040 | Msa0280660:intron | 15.0% |
| !! | GAACCAAATAAAAAAAAAAT+CGG | + | chr2_3:15510027-15510046 | None:intergenic | 15.0% |
| !!! | GGTTTTTAATAAAATTCAAA+AGG | - | chr2_3:15510173-15510192 | Msa0280660:intron | 15.0% |
| !!! | TTTTAATAAAATTCAAAAGG+AGG | - | chr2_3:15510176-15510195 | Msa0280660:intron | 15.0% |
| !!! | TAAAGACTTAAATTGATTTT+AGG | + | chr2_3:15511945-15511964 | None:intergenic | 15.0% |
| !!! | GAAAATGAATTAGAATTTTT+AGG | + | chr2_3:15512049-15512068 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTTTATGTGGGT+CGG | - | chr2_3:15509236-15509255 | Msa0280660:CDS | 20.0% |
| !!! | AGTTGTGATTTTTTTTTATG+TGG | - | chr2_3:15509294-15509313 | Msa0280660:intron | 20.0% |
| !!! | GTTGTGATTTTTTTTTATGT+GGG | - | chr2_3:15509295-15509314 | Msa0280660:intron | 20.0% |
| !!! | TTGAGTTTTATTATATCACT+TGG | - | chr2_3:15509440-15509459 | Msa0280660:intron | 20.0% |
| !!! | CTTATTTTGGTACTTTTTTA+AGG | - | chr2_3:15509514-15509533 | Msa0280660:intron | 20.0% |
| !!! | ATTGTGTAATATAGTGTTTT+AGG | - | chr2_3:15509550-15509569 | Msa0280660:intron | 20.0% |
| !!! | TAATGAGTTGAATTGAAATT+TGG | - | chr2_3:15509880-15509899 | Msa0280660:intron | 20.0% |
| !!! | TGATAATTTCTAGTTGTTAA+TGG | - | chr2_3:15511376-15511395 | Msa0280660:intron | 20.0% |
| !! | AATAGGAAAGATAGTATTAT+TGG | - | chr2_3:15511460-15511479 | Msa0280660:intron | 20.0% |
| !! | AGGAAACAGAAATATATTAA+GGG | + | chr2_3:15511614-15511633 | None:intergenic | 20.0% |
| !! | TTAGTTACTATTTGTTTACA+TGG | + | chr2_3:15511649-15511668 | None:intergenic | 20.0% |
| !!! | ATTTTCACAGTTACTTAATA+GGG | - | chr2_3:15512063-15512082 | Msa0280660:intron | 20.0% |
| !! | AATAGGAAAGGAAATAAAAA+AGG | + | chr2_3:15512607-15512626 | None:intergenic | 20.0% |
| !!! | TTTTTATTTCCTTTCCTATT+TGG | - | chr2_3:15512607-15512626 | Msa0280660:CDS | 20.0% |
| !!! | TTTTGTTGTGTTGTAAATTA+AGG | - | chr2_3:15512841-15512860 | Msa0280660:intron | 20.0% |
| ! | AATTCATACTAGTATTTAGC+CGG | - | chr2_3:15508847-15508866 | Msa0280660:three_prime_UTR | 25.0% |
| ! | TTCATATACAAAGATCTAGA+AGG | - | chr2_3:15508981-15509000 | Msa0280660:three_prime_UTR | 25.0% |
| !!! | GGTTTTTATTTTGACTGAAA+TGG | - | chr2_3:15509257-15509276 | Msa0280660:CDS | 25.0% |
| !!! | GTTTTTGTTTTTCCTTGAAA+TGG | - | chr2_3:15509387-15509406 | Msa0280660:intron | 25.0% |
| ! | TAATAAAATTCAAAAGGAGG+AGG | - | chr2_3:15510179-15510198 | Msa0280660:intron | 25.0% |
| !!! | TTTACCATGTTTGTTATATG+AGG | - | chr2_3:15510259-15510278 | Msa0280660:intron | 25.0% |
| !!! | TTACCATGTTTGTTATATGA+GGG | - | chr2_3:15510260-15510279 | Msa0280660:intron | 25.0% |
| ! | AAAAAAGCCACAAATAAAAC+TGG | + | chr2_3:15510501-15510520 | None:intergenic | 25.0% |
| !!! | TTTTATTTGTGGCTTTTTTG+TGG | - | chr2_3:15510502-15510521 | Msa0280660:CDS | 25.0% |
| !! | AGATTTGAAGTTAGCAAAAT+TGG | - | chr2_3:15510804-15510823 | Msa0280660:CDS | 25.0% |
| !! | GATTTGAAGTTAGCAAAATT+GGG | - | chr2_3:15510805-15510824 | Msa0280660:CDS | 25.0% |
| !! | ATGTTTCTTTTTGTTGAAGT+TGG | - | chr2_3:15511070-15511089 | Msa0280660:intron | 25.0% |
| ! | TTATTGTAAACCAACAAAGT+AGG | + | chr2_3:15511236-15511255 | None:intergenic | 25.0% |
| !!! | ACTTTGTTGGTTTACAATAA+TGG | - | chr2_3:15511236-15511255 | Msa0280660:intron | 25.0% |
| ! | AGAGTTAAATAAATACCTTC+AGG | + | chr2_3:15511314-15511333 | None:intergenic | 25.0% |
| ! | GGTATTTATTTAACTCTCTT+AGG | - | chr2_3:15511317-15511336 | Msa0280660:intron | 25.0% |
| !!! | AAGAAAGAAAGCATTAACAA+TGG | + | chr2_3:15511356-15511375 | None:intergenic | 25.0% |
| ! | TAATGGTCTTTAAGTATGAA+AGG | - | chr2_3:15511393-15511412 | Msa0280660:intron | 25.0% |
| !! | GATAGTATTATTGGTTGATA+AGG | - | chr2_3:15511469-15511488 | Msa0280660:intron | 25.0% |
| ! | TGATAAGGAAATATCACAAA+AGG | - | chr2_3:15511484-15511503 | Msa0280660:intron | 25.0% |
| ! | GGAAACAGAAATATATTAAG+GGG | + | chr2_3:15511613-15511632 | None:intergenic | 25.0% |
| ! | GAGGAAACAGAAATATATTA+AGG | + | chr2_3:15511615-15511634 | None:intergenic | 25.0% |
| ! | ATAGTAACTAATTCTCCATT+TGG | - | chr2_3:15511658-15511677 | Msa0280660:intron | 25.0% |
| ! | ACCTAACATAGTAAAATCTA+CGG | - | chr2_3:15511712-15511731 | Msa0280660:intron | 25.0% |
| ! | GTAATGCAATTTACTATGTT+TGG | - | chr2_3:15511781-15511800 | Msa0280660:intron | 25.0% |
| !! | CTTCAAGTTAAAATCAACTT+TGG | - | chr2_3:15511883-15511902 | Msa0280660:intron | 25.0% |
| !!! | TTGATTTTAGGTATGTTTGA+GGG | + | chr2_3:15511933-15511952 | None:intergenic | 25.0% |
| !!! | ATTGATTTTAGGTATGTTTG+AGG | + | chr2_3:15511934-15511953 | None:intergenic | 25.0% |
| !! | CATTTTCACAGTTACTTAAT+AGG | - | chr2_3:15512062-15512081 | Msa0280660:intron | 25.0% |
| ! | CAAAATACTCAGCATAATTT+AGG | + | chr2_3:15512089-15512108 | None:intergenic | 25.0% |
| !!! | CTGAGTATTTTGTTTTTAGT+TGG | - | chr2_3:15512097-15512116 | Msa0280660:intron | 25.0% |
| ! | AAGAACAAAAGAACTTAACA+AGG | + | chr2_3:15512277-15512296 | None:intergenic | 25.0% |
| !! | TTAAGTTCTTTTGTTCTTGA+AGG | - | chr2_3:15512279-15512298 | Msa0280660:intron | 25.0% |
| ! | AACTACGTATGAACTTAAAA+AGG | + | chr2_3:15512309-15512328 | None:intergenic | 25.0% |
| ! | GAAAAAACATGTATCCAAAT+AGG | + | chr2_3:15512624-15512643 | None:intergenic | 25.0% |
| ! | AAGTGAAACAATACATTTGT+GGG | - | chr2_3:15512671-15512690 | Msa0280660:CDS | 25.0% |
| ! | AAATTAATTTACAGCCTATG+GGG | + | chr2_3:15512791-15512810 | None:intergenic | 25.0% |
| ! | GAAATTAATTTACAGCCTAT+GGG | + | chr2_3:15512792-15512811 | None:intergenic | 25.0% |
| ! | TGAAATTAATTTACAGCCTA+TGG | + | chr2_3:15512793-15512812 | None:intergenic | 25.0% |
| GAAGTAAAACACAACACAAT+GGG | - | chr2_3:15508948-15508967 | Msa0280660:intron | 30.0% | |
| !!! | GTGATTTTTTTTTATGTGGG+TGG | - | chr2_3:15509298-15509317 | Msa0280660:intron | 30.0% |
| ATCAACTTTACACCATTTCA+AGG | + | chr2_3:15509402-15509421 | None:intergenic | 30.0% | |
| CATTGTTTCAGAATGTAATC+TGG | - | chr2_3:15509470-15509489 | Msa0280660:intron | 30.0% | |
| !! | TGGGTATTTGATTTGATACA+AGG | - | chr2_3:15509596-15509615 | Msa0280660:intron | 30.0% |
| !!! | TGTTGTTTTGATTCATGAGT+TGG | - | chr2_3:15509634-15509653 | Msa0280660:intron | 30.0% |
| ! | TTCATGAGTTGGATCAAAAT+AGG | - | chr2_3:15509645-15509664 | Msa0280660:intron | 30.0% |
| ! | TCATGAGTTGGATCAAAATA+GGG | - | chr2_3:15509646-15509665 | Msa0280660:intron | 30.0% |
| !! | GAAATGTAGGTTTTGTAGTA+AGG | - | chr2_3:15509771-15509790 | Msa0280660:intron | 30.0% |
| ! | GTTTCTCTCATAGTTTTTCT+AGG | + | chr2_3:15509839-15509858 | None:intergenic | 30.0% |
| !!! | TGGTTCATTTTTGTTTTCCT+TGG | - | chr2_3:15510041-15510060 | Msa0280660:intron | 30.0% |
| !!! | ATTTTTGTTTTCCTTGGAGA+TGG | - | chr2_3:15510047-15510066 | Msa0280660:intron | 30.0% |
| TAATAAACTGTCAAGAGCTT+AGG | - | chr2_3:15510142-15510161 | Msa0280660:intron | 30.0% | |
| !! | TGATTTGGTCAAGGATATTA+AGG | - | chr2_3:15510203-15510222 | Msa0280660:intron | 30.0% |
| !! | TACCATGTTTGTTATATGAG+GGG | - | chr2_3:15510261-15510280 | Msa0280660:intron | 30.0% |
| AAAAACAGCAATAACACCTA+TGG | + | chr2_3:15510548-15510567 | None:intergenic | 30.0% | |
| !!! | GTTATTGCTGTTTTTAGCAT+AGG | - | chr2_3:15510553-15510572 | Msa0280660:CDS | 30.0% |
| ! | TTCATTCTGAGTTTGCTTTA+GGG | - | chr2_3:15510750-15510769 | Msa0280660:CDS | 30.0% |
| GTTGTCATTCTTTACAAAGA+CGG | - | chr2_3:15511003-15511022 | Msa0280660:intron | 30.0% | |
| TTGTCATTCTTTACAAAGAC+GGG | - | chr2_3:15511004-15511023 | Msa0280660:intron | 30.0% | |
| ! | ATCTTCACAAATTTTGTTGC+AGG | + | chr2_3:15511170-15511189 | None:intergenic | 30.0% |
| AAAGTAGGAAGATTACAATC+CGG | + | chr2_3:15511221-15511240 | None:intergenic | 30.0% | |
| TTGTAATCTTCCTACTTTGT+TGG | - | chr2_3:15511223-15511242 | Msa0280660:intron | 30.0% | |
| ! | TTACAATAATGGAGCTGTTA+AGG | - | chr2_3:15511247-15511266 | Msa0280660:intron | 30.0% |
| ! | TACAATAATGGAGCTGTTAA+GGG | - | chr2_3:15511248-15511267 | Msa0280660:intron | 30.0% |
| ! | AGAGAATCATCTCTTTTATG+AGG | + | chr2_3:15511539-15511558 | None:intergenic | 30.0% |
| TTCAATGAGAACCTAAGATT+GGG | + | chr2_3:15511567-15511586 | None:intergenic | 30.0% | |
| ATTCAATGAGAACCTAAGAT+TGG | + | chr2_3:15511568-15511587 | None:intergenic | 30.0% | |
| AACAGAAATATATTAAGGGG+AGG | + | chr2_3:15511610-15511629 | None:intergenic | 30.0% | |
| TGTTTACATGGAAAATCTGT+TGG | + | chr2_3:15511637-15511656 | None:intergenic | 30.0% | |
| ! | ATTTTACTATGTTAGGTCCT+GGG | + | chr2_3:15511709-15511728 | None:intergenic | 30.0% |
| ! | ACCGTAGATTTTACTATGTT+AGG | + | chr2_3:15511716-15511735 | None:intergenic | 30.0% |
| TAACATAGTAAAATCTACGG+TGG | - | chr2_3:15511715-15511734 | Msa0280660:intron | 30.0% | |
| TTGAGTGTAAAATCCATGTT+TGG | - | chr2_3:15511838-15511857 | Msa0280660:intron | 30.0% | |
| !!! | GTTGATTTTAACTTGAAGCT+AGG | + | chr2_3:15511881-15511900 | None:intergenic | 30.0% |
| !! | ATGCATGTTTGGTTCATTTT+GGG | + | chr2_3:15511985-15512004 | None:intergenic | 30.0% |
| !! | AATGCATGTTTGGTTCATTT+TGG | + | chr2_3:15511986-15512005 | None:intergenic | 30.0% |
| !!! | TTTGCTTGTTTTGTAACATC+AGG | - | chr2_3:15512399-15512418 | Msa0280660:intron | 30.0% |
| AACATGTATCCAAATAGGAA+AGG | + | chr2_3:15512619-15512638 | None:intergenic | 30.0% | |
| GAAGTGAAACAATACATTTG+TGG | - | chr2_3:15512670-15512689 | Msa0280660:CDS | 30.0% | |
| AGTGAAACAATACATTTGTG+GGG | - | chr2_3:15512672-15512691 | Msa0280660:CDS | 30.0% | |
| ! | ACTACACACAAGATTCTTTT+GGG | + | chr2_3:15512722-15512741 | None:intergenic | 30.0% |
| ! | AACTACACACAAGATTCTTT+TGG | + | chr2_3:15512723-15512742 | None:intergenic | 30.0% |
| AATTAATTTACAGCCTATGG+GGG | + | chr2_3:15512790-15512809 | None:intergenic | 30.0% | |
| AGAGAAATTGTGTGTGAAAC+CGG | + | chr2_3:15508869-15508888 | None:intergenic | 35.0% | |
| GGAAGTAAAACACAACACAA+TGG | - | chr2_3:15508947-15508966 | Msa0280660:intron | 35.0% | |
| AATATCATCCCATTGAGTAG+AGG | + | chr2_3:15509009-15509028 | None:intergenic | 35.0% | |
| GATGATATTCAAGCCAAACT+TGG | - | chr2_3:15509020-15509039 | Msa0280660:three_prime_UTR | 35.0% | |
| TCGATCCATGATTTATCCTT+GGG | + | chr2_3:15509116-15509135 | None:intergenic | 35.0% | |
| ATCGATCCATGATTTATCCT+TGG | + | chr2_3:15509117-15509136 | None:intergenic | 35.0% | |
| !!! | TTCAAGTTCATCACTGGTTT+TGG | + | chr2_3:15509141-15509160 | None:intergenic | 35.0% |
| CATCATCAAGATCATCTTCA+AGG | + | chr2_3:15509166-15509185 | None:intergenic | 35.0% | |
| ATGTTGAGTACCTGTATTCT+TGG | + | chr2_3:15509199-15509218 | None:intergenic | 35.0% | |
| AATACAGGTACTCAACATTC+TGG | - | chr2_3:15509201-15509220 | Msa0280660:CDS | 35.0% | |
| ATACAGGTACTCAACATTCT+GGG | - | chr2_3:15509202-15509221 | Msa0280660:CDS | 35.0% | |
| CAGAATGTAATCTGGTTAGT+TGG | - | chr2_3:15509478-15509497 | Msa0280660:intron | 35.0% | |
| AGCGAGTATGTTAGAAAAGA+TGG | - | chr2_3:15509709-15509728 | Msa0280660:intron | 35.0% | |
| GAGTATGTTAGAAAAGATGG+TGG | - | chr2_3:15509712-15509731 | Msa0280660:intron | 35.0% | |
| !! | TAGAAAAGATGGTGGAAACT+AGG | - | chr2_3:15509720-15509739 | Msa0280660:intron | 35.0% |
| CATGTAGAGAGAAGAAATGT+AGG | - | chr2_3:15509758-15509777 | Msa0280660:intron | 35.0% | |
| TTGACGAATGTGAGATTTCA+TGG | - | chr2_3:15510118-15510137 | Msa0280660:intron | 35.0% | |
| TCAAGAGCTTAGGAATGATA+GGG | - | chr2_3:15510152-15510171 | Msa0280660:intron | 35.0% | |
| ! | GTCAAGGATATTAAGGTACT+TGG | - | chr2_3:15510210-15510229 | Msa0280660:intron | 35.0% |
| ! | AAGGATATTAAGGTACTTGG+AGG | - | chr2_3:15510213-15510232 | Msa0280660:intron | 35.0% |
| TATTAATGTCTCAGCACCAT+AGG | - | chr2_3:15510529-15510548 | Msa0280660:CDS | 35.0% | |
| !! | TGCCTTGTTTCTCTTTAACA+TGG | - | chr2_3:15510643-15510662 | Msa0280660:intron | 35.0% |
| TGCCATGTTAAAGAGAAACA+AGG | + | chr2_3:15510648-15510667 | None:intergenic | 35.0% | |
| ! | GTTCATTCTGAGTTTGCTTT+AGG | - | chr2_3:15510749-15510768 | Msa0280660:CDS | 35.0% |
| ! | TCATTCTGAGTTTGCTTTAG+GGG | - | chr2_3:15510751-15510770 | Msa0280660:CDS | 35.0% |
| ! | TTTGCTGTGATAGAAAGAAG+AGG | - | chr2_3:15510869-15510888 | Msa0280660:intron | 35.0% |
| TGATCCATACCTCAAAACTT+TGG | + | chr2_3:15510917-15510936 | None:intergenic | 35.0% | |
| ACGAAATCAGATCCTGAAAT+GGG | + | chr2_3:15510946-15510965 | None:intergenic | 35.0% | |
| AACGAAATCAGATCCTGAAA+TGG | + | chr2_3:15510947-15510966 | None:intergenic | 35.0% | |
| !! | TGGTTGTGCTTTTATTTGAC+AGG | - | chr2_3:15511090-15511109 | Msa0280660:intron | 35.0% |
| AAGTAGGAAGATTACAATCC+GGG | + | chr2_3:15511220-15511239 | None:intergenic | 35.0% | |
| AGCTGTTAAGGGAAATTATG+TGG | - | chr2_3:15511259-15511278 | Msa0280660:intron | 35.0% | |
| GCTGTTAAGGGAAATTATGT+GGG | - | chr2_3:15511260-15511279 | Msa0280660:intron | 35.0% | |
| GAAATTATGTGGGCATGAAA+AGG | - | chr2_3:15511270-15511289 | Msa0280660:intron | 35.0% | |
| ! | GCTAATCATCTTGAAGCATT+AGG | - | chr2_3:15511421-15511440 | Msa0280660:intron | 35.0% |
| TTTCCTATTCTCTCTAATCC+GGG | + | chr2_3:15511449-15511468 | None:intergenic | 35.0% | |
| CTTTCCTATTCTCTCTAATC+CGG | + | chr2_3:15511450-15511469 | None:intergenic | 35.0% | |
| TTACATGGAAAATCTGTTGG+AGG | + | chr2_3:15511634-15511653 | None:intergenic | 35.0% | |
| ! | GATTTTACTATGTTAGGTCC+TGG | + | chr2_3:15511710-15511729 | None:intergenic | 35.0% |
| AGTGTAAAATCCATGTTTGG+AGG | - | chr2_3:15511841-15511860 | Msa0280660:intron | 35.0% | |
| ACAGATGCTAAATGCATGTT+TGG | + | chr2_3:15511996-15512015 | None:intergenic | 35.0% | |
| TTAGCATCTGTGTTTGTGTT+TGG | - | chr2_3:15512005-15512024 | Msa0280660:intron | 35.0% | |
| AGATGCTGATAGGAAATACT+AGG | + | chr2_3:15512166-15512185 | None:intergenic | 35.0% | |
| TATGTCTATGAGATGCTGAT+AGG | + | chr2_3:15512176-15512195 | None:intergenic | 35.0% | |
| AAGCAGGGTCATTAAATTGA+GGG | + | chr2_3:15512359-15512378 | None:intergenic | 35.0% | |
| TAAGCAGGGTCATTAAATTG+AGG | + | chr2_3:15512360-15512379 | None:intergenic | 35.0% | |
| AATGTAGCATGTTGTAAGCA+GGG | + | chr2_3:15512374-15512393 | None:intergenic | 35.0% | |
| AAATGTAGCATGTTGTAAGC+AGG | + | chr2_3:15512375-15512394 | None:intergenic | 35.0% | |
| CATTAAGTACAGGATCTGAT+TGG | + | chr2_3:15512443-15512462 | None:intergenic | 35.0% | |
| TCAGATCCTGTACTTAATGA+TGG | - | chr2_3:15512444-15512463 | Msa0280660:intron | 35.0% | |
| TAGAAGGTTCCTCTACTCAA+TGG | - | chr2_3:15508997-15509016 | Msa0280660:three_prime_UTR | 40.0% | |
| AGAAGGTTCCTCTACTCAAT+GGG | - | chr2_3:15508998-15509017 | Msa0280660:three_prime_UTR | 40.0% | |
| TTATCCTTGGGAATGGAATC+AGG | + | chr2_3:15509104-15509123 | None:intergenic | 40.0% | |
| CCATGATTTATCCTTGGGAA+TGG | + | chr2_3:15509111-15509130 | None:intergenic | 40.0% | |
| CCATTCCCAAGGATAAATCA+TGG | - | chr2_3:15509108-15509127 | Msa0280660:three_prime_UTR | 40.0% | |
| ! | AAGGTCTTCAAGTTCATCAC+TGG | + | chr2_3:15509147-15509166 | None:intergenic | 40.0% |
| TTGAGTACCTGTATTCTTGG+AGG | + | chr2_3:15509196-15509215 | None:intergenic | 40.0% | |
| TACAGGTACTCAACATTCTG+GGG | - | chr2_3:15509203-15509222 | Msa0280660:CDS | 40.0% | |
| !! | TACTCAACATTCTGGGGTTT+CGG | - | chr2_3:15509209-15509228 | Msa0280660:CDS | 40.0% |
| ATGTAGCTGACCCCATTTAT+GGG | - | chr2_3:15509929-15509948 | Msa0280660:intron | 40.0% | |
| ! | CAAGCCTTATCCCATAAATG+GGG | + | chr2_3:15509942-15509961 | None:intergenic | 40.0% |
| ! | CCAAGCCTTATCCCATAAAT+GGG | + | chr2_3:15509943-15509962 | None:intergenic | 40.0% |
| ! | ACCAAGCCTTATCCCATAAA+TGG | + | chr2_3:15509944-15509963 | None:intergenic | 40.0% |
| TTCATTCACTACCATCTCCA+AGG | + | chr2_3:15510061-15510080 | None:intergenic | 40.0% | |
| ! | TTGGAGATGGTAGTGAATGA+AGG | - | chr2_3:15510060-15510079 | Msa0280660:intron | 40.0% |
| GTCAAGAGCTTAGGAATGAT+AGG | - | chr2_3:15510151-15510170 | Msa0280660:intron | 40.0% | |
| TCAAAAGGAGGAGGATGATT+TGG | - | chr2_3:15510188-15510207 | Msa0280660:intron | 40.0% | |
| ! | GATATTAAGGTACTTGGAGG+TGG | - | chr2_3:15510216-15510235 | Msa0280660:intron | 40.0% |
| CACCCCTCATATAACAAACA+TGG | + | chr2_3:15510266-15510285 | None:intergenic | 40.0% | |
| !! | TTTGTTATATGAGGGGTGCT+GGG | - | chr2_3:15510268-15510287 | Msa0280660:intron | 40.0% |
| ! | GAGACTGTTTGAAACGTTGA+GGG | - | chr2_3:15510297-15510316 | Msa0280660:intron | 40.0% |
| !!! | TATGCAGGGTTCTGTTTTTG+CGG | - | chr2_3:15510377-15510396 | Msa0280660:intron | 40.0% |
| !!! | TTCTGTTTTTGCGGTTTCAC+TGG | - | chr2_3:15510386-15510405 | Msa0280660:intron | 40.0% |
| !!! | GGGTGATTTTTTGGCGTTTT+AGG | - | chr2_3:15510453-15510472 | Msa0280660:CDS | 40.0% |
| ACAACAACCCAAACATCAGA+TGG | + | chr2_3:15510988-15511007 | None:intergenic | 40.0% | |
| GTAGTTAGGAATGCAATCAG+TGG | + | chr2_3:15511198-15511217 | None:intergenic | 40.0% | |
| TGATTGCATTCCTAACTACC+CGG | - | chr2_3:15511199-15511218 | Msa0280660:intron | 40.0% | |
| AGATTACAATCCGGGTAGTT+AGG | + | chr2_3:15511212-15511231 | None:intergenic | 40.0% | |
| TATGTGGGCATGAAAAGGTT+TGG | - | chr2_3:15511275-15511294 | Msa0280660:intron | 40.0% | |
| GCATTAACAATGGAGCTTGT+AGG | + | chr2_3:15511346-15511365 | None:intergenic | 40.0% | |
| ! | ATCTTGAAGCATTAGGAACC+CGG | - | chr2_3:15511428-15511447 | Msa0280660:intron | 40.0% |
| TGGACCTTACACCAACAAAT+GGG | + | chr2_3:15511684-15511703 | None:intergenic | 40.0% | |
| TTGGACCTTACACCAACAAA+TGG | + | chr2_3:15511685-15511704 | None:intergenic | 40.0% | |
| !! | GTAGCTTTAACCTCCAAACA+TGG | + | chr2_3:15511854-15511873 | None:intergenic | 40.0% |
| GGTGTTTAGAGAATTCTCTC+TGG | - | chr2_3:15512118-15512137 | Msa0280660:intron | 40.0% | |
| GGCAGAAGTTCAACTAGATA+AGG | + | chr2_3:15512207-15512226 | None:intergenic | 40.0% | |
| GACTGCAAATTGCAATCAAG+AGG | + | chr2_3:15512228-15512247 | None:intergenic | 40.0% | |
| !! | TTCTTTTGGGAGCAAAGTTG+TGG | + | chr2_3:15512709-15512728 | None:intergenic | 40.0% |
| GAGTAAGAAAGGCGAACACA+CGG | - | chr2_3:15508920-15508939 | Msa0280660:intron | 45.0% | |
| AGGAGGAAGATTGCCAAGTT+TGG | + | chr2_3:15509036-15509055 | None:intergenic | 45.0% | |
| TTGAAAGCTGGTTGCTTAGG+AGG | + | chr2_3:15509053-15509072 | None:intergenic | 45.0% | |
| GGTTTGAAAGCTGGTTGCTT+AGG | + | chr2_3:15509056-15509075 | None:intergenic | 45.0% | |
| AATGGAATCAGGATCAGTGG+CGG | + | chr2_3:15509093-15509112 | None:intergenic | 45.0% | |
| TGATCCTGATTCCATTCCCA+AGG | - | chr2_3:15509097-15509116 | Msa0280660:three_prime_UTR | 45.0% | |
| ATCGCTTCCTCCAAGAATAC+AGG | - | chr2_3:15509186-15509205 | Msa0280660:CDS | 45.0% | |
| !! | AGATGGTGGAAACTAGGCTT+AGG | - | chr2_3:15509726-15509745 | Msa0280660:intron | 45.0% |
| GAAACTAGGCTTAGGTGGTT+TGG | - | chr2_3:15509734-15509753 | Msa0280660:intron | 45.0% | |
| GAGAGTAGATCATGATAGCC+AGG | - | chr2_3:15509793-15509812 | Msa0280660:intron | 45.0% | |
| CATAAATGGGGTCAGCTACA+TGG | + | chr2_3:15509930-15509949 | None:intergenic | 45.0% | |
| CATGTAGCTGACCCCATTTA+TGG | - | chr2_3:15509928-15509947 | Msa0280660:intron | 45.0% | |
| CTGACCCCATTTATGGGATA+AGG | - | chr2_3:15509935-15509954 | Msa0280660:intron | 45.0% | |
| CCCATTTATGGGATAAGGCT+TGG | - | chr2_3:15509940-15509959 | Msa0280660:intron | 45.0% | |
| ! | TTGATAACCCTCCGTTCTGA+TGG | - | chr2_3:15509969-15509988 | Msa0280660:intron | 45.0% |
| TGATAACCCTCCGTTCTGAT+GGG | - | chr2_3:15509970-15509989 | Msa0280660:intron | 45.0% | |
| ATGAAAGAGCCCCATCAGAA+CGG | + | chr2_3:15509983-15510002 | None:intergenic | 45.0% | |
| ATGGGGCTCTTTCATGAATC+TGG | - | chr2_3:15509988-15510007 | Msa0280660:intron | 45.0% | |
| CTTGGAGGTGGAGTTTAACT+CGG | - | chr2_3:15510228-15510247 | Msa0280660:intron | 45.0% | |
| !! | GTTTGTTATATGAGGGGTGC+TGG | - | chr2_3:15510267-15510286 | Msa0280660:intron | 45.0% |
| ! | GGAGACTGTTTGAAACGTTG+AGG | - | chr2_3:15510296-15510315 | Msa0280660:intron | 45.0% |
| !!! | GTTGAGGGAGAGCTTTGTTT+TGG | - | chr2_3:15510312-15510331 | Msa0280660:intron | 45.0% |
| ! | AGGTTTGGTATGCACTATGC+AGG | - | chr2_3:15510362-15510381 | Msa0280660:intron | 45.0% |
| ! | GGTTTGGTATGCACTATGCA+GGG | - | chr2_3:15510363-15510382 | Msa0280660:intron | 45.0% |
| AAAATCACCCAAGAGCCACT+AGG | + | chr2_3:15510443-15510462 | None:intergenic | 45.0% | |
| !!! | GTGGCTCTTGGGTGATTTTT+TGG | - | chr2_3:15510444-15510463 | Msa0280660:CDS | 45.0% |
| !! | GTTTTAGGTCCGCCTATGAT+GGG | - | chr2_3:15510468-15510487 | Msa0280660:CDS | 45.0% |
| !! | TTTTAGGTCCGCCTATGATG+GGG | - | chr2_3:15510469-15510488 | Msa0280660:CDS | 45.0% |
| !!! | GCTGTGGCCAGTTTTATTTG+TGG | - | chr2_3:15510491-15510510 | Msa0280660:CDS | 45.0% |
| ! | AGCATAGGCTGCTGTTTGTT+TGG | - | chr2_3:15510568-15510587 | Msa0280660:CDS | 45.0% |
| !! | GCTGTTTGTTTGGCTTTGCT+TGG | - | chr2_3:15510578-15510597 | Msa0280660:CDS | 45.0% |
| ! | CTTTAGGGGTTTGAGAAGTG+AGG | - | chr2_3:15510765-15510784 | Msa0280660:CDS | 45.0% |
| ! | GAGGTTAGCTGAGATACAAG+AGG | - | chr2_3:15510888-15510907 | Msa0280660:intron | 45.0% |
| ! | AAGAGGCAGCCAAAGTTTTG+AGG | - | chr2_3:15510905-15510924 | Msa0280660:intron | 45.0% |
| !!! | GCAGCCAAAGTTTTGAGGTA+TGG | - | chr2_3:15510910-15510929 | Msa0280660:intron | 45.0% |
| AGGATCTGATTTCGTTCGAG+AGG | - | chr2_3:15510951-15510970 | Msa0280660:intron | 45.0% | |
| TTTGACAGGATTCCCGAATG+TGG | - | chr2_3:15511104-15511123 | Msa0280660:intron | 45.0% | |
| TTGACAGGATTCCCGAATGT+GGG | - | chr2_3:15511105-15511124 | Msa0280660:intron | 45.0% | |
| TTGCATCAACACCCCACATT+CGG | + | chr2_3:15511120-15511139 | None:intergenic | 45.0% | |
| !! | GGTGTTGATGCAATGCATTG+AGG | - | chr2_3:15511127-15511146 | Msa0280660:intron | 45.0% |
| GATGCAATGCATTGAGGAAC+TGG | - | chr2_3:15511133-15511152 | Msa0280660:intron | 45.0% | |
| ! | TACCTTCAGGAGTGCATCTT+CGG | + | chr2_3:15511301-15511320 | None:intergenic | 45.0% |
| ! | GAACCCGGATTAGAGAGAAT+AGG | - | chr2_3:15511443-15511462 | Msa0280660:intron | 45.0% |
| !! | TTATGAGGAGCATTTGCGCA+GGG | + | chr2_3:15511524-15511543 | None:intergenic | 45.0% |
| !! | TTTATGAGGAGCATTTGCGC+AGG | + | chr2_3:15511525-15511544 | None:intergenic | 45.0% |
| TTCTCTCTCTGCCCAATCTT+AGG | - | chr2_3:15511553-15511572 | Msa0280660:intron | 45.0% | |
| TCTCCATTTGGCCCATTTGT+TGG | - | chr2_3:15511670-15511689 | Msa0280660:intron | 45.0% | |
| ACACCAACAAATGGGCCAAA+TGG | + | chr2_3:15511676-15511695 | None:intergenic | 45.0% | |
| ! | TTGGCCCATTTGTTGGTGTA+AGG | - | chr2_3:15511677-15511696 | Msa0280660:intron | 45.0% |
| ACTATGTTAGGTCCTGGGTT+TGG | + | chr2_3:15511704-15511723 | None:intergenic | 45.0% | |
| CTCTCTGGCTATGAAGCTTT+CGG | - | chr2_3:15512133-15512152 | Msa0280660:intron | 45.0% | |
| GGTGAAAGATGTGCAATACG+AGG | + | chr2_3:15512256-15512275 | None:intergenic | 45.0% | |
| CTCTGGCCATCATTAAGTAC+AGG | + | chr2_3:15512453-15512472 | None:intergenic | 45.0% | |
| TTGATTCCTCATCTCTGCTC+TGG | + | chr2_3:15512470-15512489 | None:intergenic | 45.0% | |
| TCAAGACAAGCCGTCATTGA+TGG | - | chr2_3:15512486-15512505 | Msa0280660:intron | 45.0% | |
| CTTGCGAACTCCATCAATGA+CGG | + | chr2_3:15512499-15512518 | None:intergenic | 45.0% | |
| TCATTGATGGAGTTCGCAAG+AGG | - | chr2_3:15512499-15512518 | Msa0280660:intron | 45.0% | |
| CGTAGCTGATCATGAAGAGA+AGG | - | chr2_3:15512536-15512555 | Msa0280660:CDS | 45.0% | |
| TTTGGGAGCAAAGTTGTGGA+AGG | + | chr2_3:15512705-15512724 | None:intergenic | 45.0% | |
| !!! | AATTTTAATTTTTTTTATGT+GGG | - | chr2_3:15509232-15509251 | Msa0280660:CDS | 5.0% |
| TAAGAAAGGCGAACACACGG+TGG | - | chr2_3:15508923-15508942 | Msa0280660:intron | 50.0% | |
| ! | AAAGGTGCGGGTTTGAAAGC+TGG | + | chr2_3:15509065-15509084 | None:intergenic | 50.0% |
| ATGGAATCAGGATCAGTGGC+GGG | + | chr2_3:15509092-15509111 | None:intergenic | 50.0% | |
| GGGAATGGAATCAGGATCAG+TGG | + | chr2_3:15509096-15509115 | None:intergenic | 50.0% | |
| TGGTGGAAACTAGGCTTAGG+TGG | - | chr2_3:15509729-15509748 | Msa0280660:intron | 50.0% | |
| CATGATAGCCAGGTCACTAG+AGG | - | chr2_3:15509803-15509822 | Msa0280660:intron | 50.0% | |
| TTCCTCTACCTCTAGTGACC+TGG | + | chr2_3:15509814-15509833 | None:intergenic | 50.0% | |
| GATAACCCTCCGTTCTGATG+GGG | - | chr2_3:15509971-15509990 | Msa0280660:intron | 50.0% | |
| !! | GGAGGAGGATGATTTGGTCA+AGG | - | chr2_3:15510194-15510213 | Msa0280660:intron | 50.0% |
| !!! | GGAGAGCTTTGTTTTGGCTG+TGG | - | chr2_3:15510318-15510337 | Msa0280660:intron | 50.0% |
| !! | TGGTTTGCTGCTGTCAGGTT+TGG | - | chr2_3:15510347-15510366 | Msa0280660:intron | 50.0% |
| TTCCACAGCAGTTTGCCTAG+TGG | - | chr2_3:15510425-15510444 | Msa0280660:CDS | 50.0% | |
| CAGTTTGCCTAGTGGCTCTT+GGG | - | chr2_3:15510433-15510452 | Msa0280660:CDS | 50.0% | |
| !! | CGTTTTAGGTCCGCCTATGA+TGG | - | chr2_3:15510467-15510486 | Msa0280660:CDS | 50.0% |
| GGATCAGTGACTCCCATTTC+AGG | - | chr2_3:15510931-15510950 | Msa0280660:intron | 50.0% | |
| TTTCGTTCGAGAGGTTTCGC+AGG | - | chr2_3:15510960-15510979 | Msa0280660:intron | 50.0% | |
| GCAGGCTCCATCTGATGTTT+GGG | - | chr2_3:15510978-15510997 | Msa0280660:intron | 50.0% | |
| TGACAGGATTCCCGAATGTG+GGG | - | chr2_3:15511106-15511125 | Msa0280660:intron | 50.0% | |
| TGCATCAACACCCCACATTC+GGG | + | chr2_3:15511119-15511138 | None:intergenic | 50.0% | |
| CATTTGCGCAGGGATTACAG+GGG | + | chr2_3:15511514-15511533 | None:intergenic | 50.0% | |
| GCATTTGCGCAGGGATTACA+GGG | + | chr2_3:15511515-15511534 | None:intergenic | 50.0% | |
| AGCATTTGCGCAGGGATTAC+AGG | + | chr2_3:15511516-15511535 | None:intergenic | 50.0% | |
| TTGGTGTAAGGTCCAAACCC+AGG | - | chr2_3:15511689-15511708 | Msa0280660:intron | 50.0% | |
| GTACAGGATCTGATTGGCAC+AGG | + | chr2_3:15512437-15512456 | None:intergenic | 50.0% | |
| ! | TCCATTTGCTAGACCCCCAT+AGG | - | chr2_3:15512774-15512793 | Msa0280660:five_prime_UTR | 50.0% |
| TTTCTTACTCCGTCGCGCGA+GGG | + | chr2_3:15508910-15508929 | None:intergenic | 55.0% | |
| TGGAATCAGGATCAGTGGCG+GGG | + | chr2_3:15509091-15509110 | None:intergenic | 55.0% | |
| AGCCAGGTCACTAGAGGTAG+AGG | - | chr2_3:15509809-15509828 | Msa0280660:intron | 55.0% | |
| AAGAGCCCCATCAGAACGGA+GGG | + | chr2_3:15509979-15509998 | None:intergenic | 55.0% | |
| AAAGAGCCCCATCAGAACGG+AGG | + | chr2_3:15509980-15509999 | None:intergenic | 55.0% | |
| !! | ATATGAGGGGTGCTGGGATC+TGG | - | chr2_3:15510274-15510293 | Msa0280660:intron | 55.0% |
| !! | TATGAGGGGTGCTGGGATCT+GGG | - | chr2_3:15510275-15510294 | Msa0280660:intron | 55.0% |
| !!! | TGTTTTGGCTGTGGAGCTGC+TGG | - | chr2_3:15510327-15510346 | Msa0280660:intron | 55.0% |
| AGCCACTAGGCAAACTGCTG+TGG | + | chr2_3:15510430-15510449 | None:intergenic | 55.0% | |
| GCAGTTTGCCTAGTGGCTCT+TGG | - | chr2_3:15510432-15510451 | Msa0280660:CDS | 55.0% | |
| CGCAGGCTCCATCTGATGTT+TGG | - | chr2_3:15510977-15510996 | Msa0280660:intron | 55.0% | |
| ! | TTAAGGGGAGGCGTAGCAAG+TGG | + | chr2_3:15511598-15511617 | None:intergenic | 55.0% |
| TGATGGCCAGAGCAGAGATG+AGG | - | chr2_3:15512461-15512480 | Msa0280660:intron | 55.0% | |
| GCCTATGGGGGTCTAGCAAA+TGG | + | chr2_3:15512778-15512797 | None:intergenic | 55.0% | |
| ACTCTCTTTCCCTCGCGCGA+CGG | - | chr2_3:15508898-15508917 | Msa0280660:three_prime_UTR | 60.0% | |
| CTTTCTTACTCCGTCGCGCG+AGG | + | chr2_3:15508911-15508930 | None:intergenic | 60.0% | |
| CTCGCGCGACGGAGTAAGAA+AGG | - | chr2_3:15508909-15508928 | Msa0280660:three_prime_UTR | 60.0% | |
| GAAAGGCGAACACACGGTGG+TGG | - | chr2_3:15508926-15508945 | Msa0280660:intron | 60.0% | |
| GGAATCAGGATCAGTGGCGG+GGG | + | chr2_3:15509090-15509109 | None:intergenic | 60.0% | |
| !! | GCTGCTGGTTTGCTGCTGTC+AGG | - | chr2_3:15510342-15510361 | Msa0280660:intron | 60.0% |
| ACTGGCCACAGCCCCATCAT+AGG | + | chr2_3:15510483-15510502 | None:intergenic | 60.0% | |
| GGCCGAAGATGCACTCCTGA+AGG | - | chr2_3:15511296-15511315 | Msa0280660:intron | 60.0% | |
| ! | GGAGGCGTAGCAAGTGGCAA+AGG | + | chr2_3:15511592-15511611 | None:intergenic | 60.0% |
| ! | AGTGGCGGGGGAGAAAGGTG+CGG | + | chr2_3:15509078-15509097 | None:intergenic | 65.0% |
| ! | GGATCAGTGGCGGGGGAGAA+AGG | + | chr2_3:15509083-15509102 | None:intergenic | 65.0% |
| ! | GTCCGCCTATGATGGGGCTG+TGG | - | chr2_3:15510475-15510494 | Msa0280660:CDS | 65.0% |
| GGCCACAGCCCCATCATAGG+CGG | + | chr2_3:15510480-15510499 | None:intergenic | 65.0% | |
| ! | GTGGCGGGGGAGAAAGGTGC+GGG | + | chr2_3:15509077-15509096 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 15508838 | 15512885 | 15508838 | ID=Msa0280660;Name=Msa0280660 |
| chr2_3 | mRNA | 15508838 | 15512885 | 15508838 | ID=Msa0280660-mRNA-1;Parent=Msa0280660;Name=Msa0280660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=108|1|1|1|0.6|0.33|6|284|250 |
| chr2_3 | exon | 15508838 | 15508929 | 15508838 | ID=Msa0280660-mRNA-1:exon:6495;Parent=Msa0280660-mRNA-1 |
| chr2_3 | exon | 15508950 | 15509302 | 15508950 | ID=Msa0280660-mRNA-1:exon:6494;Parent=Msa0280660-mRNA-1 |
| chr2_3 | exon | 15510406 | 15510611 | 15510406 | ID=Msa0280660-mRNA-1:exon:6493;Parent=Msa0280660-mRNA-1 |
| chr2_3 | exon | 15510698 | 15510841 | 15510698 | ID=Msa0280660-mRNA-1:exon:6492;Parent=Msa0280660-mRNA-1 |
| chr2_3 | exon | 15512516 | 15512825 | 15512516 | ID=Msa0280660-mRNA-1:exon:6491;Parent=Msa0280660-mRNA-1 |
| chr2_3 | exon | 15512846 | 15512885 | 15512846 | ID=Msa0280660-mRNA-1:exon:6490;Parent=Msa0280660-mRNA-1 |
| chr2_3 | five_prime_UTR | 15512846 | 15512885 | 15512846 | ID=Msa0280660-mRNA-1:five_prime_utr;Parent=Msa0280660-mRNA-1 |
| chr2_3 | five_prime_UTR | 15512758 | 15512825 | 15512758 | ID=Msa0280660-mRNA-1:five_prime_utr;Parent=Msa0280660-mRNA-1 |
| chr2_3 | CDS | 15512516 | 15512757 | 15512516 | ID=Msa0280660-mRNA-1:cds;Parent=Msa0280660-mRNA-1 |
| chr2_3 | CDS | 15510698 | 15510841 | 15510698 | ID=Msa0280660-mRNA-1:cds;Parent=Msa0280660-mRNA-1 |
| chr2_3 | CDS | 15510406 | 15510611 | 15510406 | ID=Msa0280660-mRNA-1:cds;Parent=Msa0280660-mRNA-1 |
| chr2_3 | CDS | 15509142 | 15509302 | 15509142 | ID=Msa0280660-mRNA-1:cds;Parent=Msa0280660-mRNA-1 |
| chr2_3 | three_prime_UTR | 15508950 | 15509141 | 15508950 | ID=Msa0280660-mRNA-1:three_prime_utr;Parent=Msa0280660-mRNA-1 |
| chr2_3 | three_prime_UTR | 15508838 | 15508929 | 15508838 | ID=Msa0280660-mRNA-1:three_prime_utr;Parent=Msa0280660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
