AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0778580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778580 MtrunA17_Chr5g0434671 88.056 427 10 2 1 386 1 427 0.0 744
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0778580 AT1G66330.1 61.562 320 77 3 104 377 81 400 1.81e-115 343
Msa0778580 AT1G66330.2 61.562 320 77 3 104 377 81 400 1.81e-115 343

Find 107 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAATTCTGTCCCTAAAA+AGG 0.241678 5_2:-59119115 None:intergenic
AGAACCACAAATTCCTTTCT+TGG 0.277347 5_2:+59121411 Msa0778580:CDS
GAGAAACTTTGCATCGTTAC+AGG 0.311814 5_2:-59118610 None:intergenic
CCGAAACCAGTCATTGAATA+AGG 0.321628 5_2:-59118179 None:intergenic
GTCACTTTCCAATGATCATA+TGG 0.321930 5_2:-59123570 None:intergenic
TTAATTCTGGGGAGGCATTC+AGG 0.324186 5_2:-59123322 None:intergenic
CTGGAGTGACGGGGCCTTAG+AGG 0.337435 5_2:+59119543 Msa0778580:CDS
TCAAGGGTTAGACTCGAAAA+TGG 0.338957 5_2:+59118118 Msa0778580:CDS
GAAGCTAAACTAACCTCTTC+AGG 0.339327 5_2:-59121639 None:intergenic
CCTTATTCAATGACTGGTTT+CGG 0.341454 5_2:+59118179 Msa0778580:CDS
GAACCACAAATTCCTTTCTT+GGG 0.342712 5_2:+59121412 Msa0778580:CDS
ATCTTCCATGGCACGTTGCT+TGG 0.348175 5_2:-59120619 None:intergenic
GTCTTGGAGATTAAACTAAC+TGG 0.351920 5_2:-59118220 None:intergenic
ACAGAATTTCTCAAACTTGA+TGG 0.355828 5_2:+59119126 Msa0778580:CDS
GATCGTATTCGTTCTGTTCG+TGG 0.356798 5_2:+59118564 Msa0778580:CDS
ATACAGTAGCAATACGATTA+AGG 0.363525 5_2:-59119370 None:intergenic
ATTTAACAGATTTACCTCTA+AGG 0.373384 5_2:-59119557 None:intergenic
AGTATCTATAGGAAGCTTAC+TGG 0.373975 5_2:+59121568 Msa0778580:intron
GTCGATTATTAGATGGAGAT+TGG 0.376730 5_2:+59123416 Msa0778580:three_prime_UTR
GATGCTGCAGCTGCAATGGC+TGG 0.379748 5_2:-59123140 None:intergenic
TGATCTTCTGATGGCACTTA+CGG 0.391058 5_2:+59118000 Msa0778580:exon
ATATGGGTTAATCCTTGAAA+TGG 0.397394 5_2:-59123553 None:intergenic
AATGCATATAACCAGCATAT+TGG 0.401335 5_2:-59123609 None:intergenic
ATAGGAAGCTTACTGGAGTA+TGG 0.402823 5_2:+59121575 Msa0778580:intron
TTCTTTCTTTGATCTTCTGA+TGG 0.403524 5_2:+59117991 Msa0778580:exon
TTTCAGTTCATATATAGCTT+TGG 0.412176 5_2:-59123162 None:intergenic
ATATCACCTCCAAGGACATA+AGG 0.415173 5_2:-59120644 None:intergenic
GGTAAACGTCGATTATTAGA+TGG 0.417198 5_2:+59123409 Msa0778580:three_prime_UTR
ATATCCACTGCAGATCTTGA+AGG 0.418058 5_2:+59119480 Msa0778580:intron
CCTTACCTGGTACCGACATC+AGG 0.418804 5_2:-59121825 None:intergenic
AAATAGAAGAAGGGGATAGT+TGG 0.418919 5_2:+59123195 Msa0778580:CDS
TAAAACTAATGTAGGATTAA+CGG 0.420561 5_2:+59123342 Msa0778580:three_prime_UTR
GACTGGTTTCGGTTCATCAA+TGG 0.425130 5_2:+59118190 Msa0778580:CDS
ACTGCATGCAGTCCATTTCA+AGG 0.425697 5_2:+59123541 Msa0778580:three_prime_UTR
GGATTAACCCATATGATCAT+TGG 0.432354 5_2:+59123562 Msa0778580:three_prime_UTR
TTTGGATGCTGCAGCTGCAA+TGG 0.432658 5_2:-59123144 None:intergenic
ACTATACTTGTTGTAATGTA+AGG 0.433287 5_2:+59123701 Msa0778580:intron
CCGATGAGCACTGGAGTGAC+GGG 0.435635 5_2:+59119533 Msa0778580:CDS
AGATATTTCAAGTGCTATGA+AGG 0.439383 5_2:+59117954 Msa0778580:five_prime_UTR
AGAACGGATTACTGCTCTTC+AGG 0.442816 5_2:+59121446 Msa0778580:CDS
TCTGTCTCATGTAAATCAAC+AGG 0.443072 5_2:+59118247 Msa0778580:CDS
GGATAGTTGGAGGTTTATGA+TGG 0.443543 5_2:+59123208 Msa0778580:CDS
AACTGTATTCTGTTTATCCT+TGG 0.449791 5_2:-59118094 None:intergenic
CGAATCATGCTTGAAAAGAA+TGG 0.454171 5_2:+59121387 Msa0778580:CDS
CTGCATAGCTCGGGCAAGAA+AGG 0.454178 5_2:+59119304 Msa0778580:intron
TAGAAGAAGGGGATAGTTGG+AGG 0.461239 5_2:+59123198 Msa0778580:CDS
GGAAGATGCCCTTATGTCCT+TGG 0.463046 5_2:+59120635 Msa0778580:CDS
TAAACACAGTGTATCTTTGT+TGG 0.464348 5_2:+59121785 Msa0778580:CDS
TTTATGCCAAAGATGGCAAA+AGG 0.465147 5_2:-59123780 None:intergenic
GATCAACCTTATTCAATGAC+TGG 0.479668 5_2:+59118173 Msa0778580:CDS
ACATGAGACAGAAGATGTCT+TGG 0.481154 5_2:-59118236 None:intergenic
TATCACCTCCAAGGACATAA+GGG 0.487860 5_2:-59120643 None:intergenic
GCCGATGAGCACTGGAGTGA+CGG 0.489465 5_2:+59119532 Msa0778580:CDS
GTTGCTCTATTAGTCAAGAT+AGG 0.494347 5_2:-59118043 None:intergenic
ACGTTGCTTGGCACGGAAGT+CGG 0.495141 5_2:-59120607 None:intergenic
TCACTTTCCAATGATCATAT+GGG 0.495226 5_2:-59123569 None:intergenic
ATCCCCAAGAAAGGAATTTG+TGG 0.496739 5_2:-59121415 None:intergenic
ATTATTAGATGGAGATTGGA+TGG 0.508411 5_2:+59123420 Msa0778580:three_prime_UTR
TGCCGTCACATCCCCAAGAA+AGG 0.509048 5_2:-59121424 None:intergenic
AATCCTGCAGTCACTATAGT+TGG 0.509869 5_2:+59123388 Msa0778580:three_prime_UTR
AGCAATGGGAAATAGAAGAA+GGG 0.512568 5_2:+59123186 Msa0778580:CDS
ATTTCTTCAGTGGCATAATG+AGG 0.515220 5_2:+59119064 Msa0778580:intron
AAGCAATGGGAAATAGAAGA+AGG 0.516781 5_2:+59123185 Msa0778580:CDS
CCCAGAATTAAAACTAATGT+AGG 0.517534 5_2:+59123334 Msa0778580:three_prime_UTR
AACCACAAATTCCTTTCTTG+GGG 0.522590 5_2:+59121413 Msa0778580:CDS
CCATGGCACGTTGCTTGGCA+CGG 0.523891 5_2:-59120614 None:intergenic
AAAGTGCTGCCGATGAGCAC+TGG 0.524125 5_2:+59119524 Msa0778580:CDS
TTCCTTTCTTGGGGATGTGA+CGG 0.526745 5_2:+59121422 Msa0778580:CDS
TAACTATGCCTTTGTTCCAC+AGG 0.536157 5_2:+59117081 Msa0778580:five_prime_UTR
TAGGATTAACGGATCCAGAT+TGG 0.536387 5_2:+59123353 Msa0778580:three_prime_UTR
GTTCCCCTGATGTCGGTACC+AGG 0.542379 5_2:+59121820 Msa0778580:CDS
CTTCAGTGGCATAATGAGGA+TGG 0.542595 5_2:+59119068 Msa0778580:intron
TTTCAAGTGCTATGAAGGCC+AGG 0.543283 5_2:+59117959 Msa0778580:five_prime_UTR
GGACATAAGGGCATCTTCCA+TGG 0.546770 5_2:-59120631 None:intergenic
CCCGTCACTCCAGTGCTCAT+CGG 0.553203 5_2:-59119533 None:intergenic
TTACCAACTATAGTGACTGC+AGG 0.564331 5_2:-59123391 None:intergenic
TCTTATAGACCTTGATGCAA+TGG 0.567724 5_2:+59121758 Msa0778580:CDS
CCGTGCCAAGCAACGTGCCA+TGG 0.568141 5_2:+59120614 Msa0778580:CDS
TCTGCACTTTCTGAAGCAGA+TGG 0.572909 5_2:+59121600 Msa0778580:CDS
TGATTACACTGATCCTGAAG+AGG 0.574801 5_2:+59121626 Msa0778580:CDS
CTTACCTGGTACCGACATCA+GGG 0.576473 5_2:-59121824 None:intergenic
CTTGTTGTAGAGGCTGGCCG+AGG 0.577303 5_2:+59123109 Msa0778580:intron
GTTTACCGTCCATTGCATCA+AGG 0.580602 5_2:-59121767 None:intergenic
GCAATGGGAAATAGAAGAAG+GGG 0.584212 5_2:+59123187 Msa0778580:CDS
CTTGTAAGATGCCAATATGC+TGG 0.584262 5_2:+59123598 Msa0778580:three_prime_UTR
GGCTGTTGAGCAAATTATGT+AGG 0.594856 5_2:-59123729 None:intergenic
CGATGAGCACTGGAGTGACG+GGG 0.596211 5_2:+59119534 Msa0778580:CDS
AGTATAAAATATCACCTCCA+AGG 0.600169 5_2:-59120652 None:intergenic
GCTTGGCACGGAAGTCGGCA+AGG 0.602685 5_2:-59120602 None:intergenic
AAAACTGACCTGTGGAACAA+AGG 0.609208 5_2:-59117089 None:intergenic
TAGTCATCTCAGTCGTACAA+TGG 0.612797 5_2:-59123503 None:intergenic
TGTTCTAGTTCCCCTGATGT+CGG 0.616561 5_2:+59121813 Msa0778580:CDS
TCTTGCTCACCATCATGTCA+TGG 0.617464 5_2:-59120792 None:intergenic
TTGGGGATGTGACGGCAGAA+CGG 0.619552 5_2:+59121430 Msa0778580:CDS
GCAACACTTTGTAGATCACA+TGG 0.633717 5_2:+59118061 Msa0778580:CDS
AGATGCCCTTATGTCCTTGG+AGG 0.646483 5_2:+59120638 Msa0778580:CDS
ATGATGTTTCTGATTTGACT+AGG 0.646539 5_2:+59118311 Msa0778580:CDS
ATAGACCTTGATGCAATGGA+CGG 0.648829 5_2:+59121762 Msa0778580:CDS
AATGGCTGGATTGCTATCCT+CGG 0.650744 5_2:-59123126 None:intergenic
AAGAAAGAATGAGATACACC+TGG 0.651565 5_2:-59117977 None:intergenic
ACGGCAAACAAAGTTTCAAG+CGG 0.658042 5_2:+59118019 Msa0778580:CDS
ACGATGCAAAGTTTCTCTCA+CGG 0.666602 5_2:+59118616 Msa0778580:CDS
CACATGGATCTTCATCACCA+AGG 0.668703 5_2:+59118077 Msa0778580:CDS
AAACAACCCAGATAAAAGCA+TGG 0.675395 5_2:-59123750 None:intergenic
TTACCTGGTACCGACATCAG+GGG 0.705857 5_2:-59121823 None:intergenic
TATGATGGATGAAAGCACCA+AGG 0.723092 5_2:+59123223 Msa0778580:CDS
GATACTGAGAAAATCGACCG+TGG 0.757796 5_2:+59119326 Msa0778580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAAAAAAAA+AGG - chr5_2:59120699-59120718 None:intergenic 0.0%
!! ATAAAAAACTTAATTAGTTA+GGG - chr5_2:59117300-59117319 None:intergenic 10.0%
!! TATAAAAAACTTAATTAGTT+AGG - chr5_2:59117301-59117320 None:intergenic 10.0%
!! AATTTGACATATAATAAAAT+TGG - chr5_2:59118412-59118431 None:intergenic 10.0%
!!! ATTTTATTATATGTCAAATT+AGG + chr5_2:59118412-59118431 Msa0778580:intron 10.0%
!!! AATATATTTCTAAAAAGATA+TGG - chr5_2:59118751-59118770 None:intergenic 10.0%
!!! ACATTTAATTATTTAGAATA+TGG - chr5_2:59118974-59118993 None:intergenic 10.0%
!! TTATTTATAATTCATATGAA+TGG + chr5_2:59120523-59120542 Msa0778580:intron 10.0%
!! ATAGAACAAATTTATTTATT+TGG - chr5_2:59120742-59120761 None:intergenic 10.0%
!! GTTTAAATAATTAAATACTA+CGG - chr5_2:59121130-59121149 None:intergenic 10.0%
!!! TTCTAAAAAAAATGATTTTA+AGG - chr5_2:59122883-59122902 None:intergenic 10.0%
!!! GTTTTTTATACATCTAATAT+TGG + chr5_2:59117311-59117330 Msa0778580:intron 15.0%
!!! TCTTTTTAGAAATATATTGT+TGG + chr5_2:59118753-59118772 Msa0778580:intron 15.0%
!! TATATCACATTATTTAAACA+AGG - chr5_2:59119164-59119183 None:intergenic 15.0%
!! AAAAAATAGTTACATTTCAA+TGG - chr5_2:59119216-59119235 None:intergenic 15.0%
!! TATTGAATGTATTTAAAAAG+TGG - chr5_2:59122106-59122125 None:intergenic 15.0%
!! TATCAATATGAATATGAATA+GGG + chr5_2:59122408-59122427 Msa0778580:intron 15.0%
!! TTAAAACCTTATAATTGAAA+TGG + chr5_2:59122547-59122566 Msa0778580:intron 15.0%
!!! AAAAAATGATTTTAAGGAAT+GGG - chr5_2:59122877-59122896 None:intergenic 15.0%
!!! AAAAAAATGATTTTAAGGAA+TGG - chr5_2:59122878-59122897 None:intergenic 15.0%
!!! GTTTTAATTATTAGATTTTC+AGG - chr5_2:59123261-59123280 None:intergenic 15.0%
!!! GTTTTAAATAATTTCTCAAT+TGG - chr5_2:59123288-59123307 None:intergenic 15.0%
!!! AGTTAGTTTTACAACTTTTT+TGG - chr5_2:59117066-59117085 None:intergenic 20.0%
!! TGATTCTTAAAAGAAATGTT+TGG + chr5_2:59117453-59117472 Msa0778580:intron 20.0%
!! TTAAAAGAAATGTTTGGATA+AGG + chr5_2:59117459-59117478 Msa0778580:intron 20.0%
!! AAAGTTATGTTTAACTACTA+AGG - chr5_2:59117649-59117668 None:intergenic 20.0%
!!! AATTTTTCTGTTTTCTTTAG+AGG + chr5_2:59117786-59117805 Msa0778580:intron 20.0%
!! CTAAAAAAATGGTAACAAAA+TGG - chr5_2:59118386-59118405 None:intergenic 20.0%
!! AAAATTGGCAACTAAAAAAA+TGG - chr5_2:59118397-59118416 None:intergenic 20.0%
!!! TACTCAAAAACTATTTTGAA+CGG + chr5_2:59118841-59118860 Msa0778580:intron 20.0%
!!! TTAACTAATTATTTCTTCAG+TGG + chr5_2:59119054-59119073 Msa0778580:intron 20.0%
!!! TCTAGAATTTTCAATTTTTC+TGG + chr5_2:59119399-59119418 Msa0778580:intron 20.0%
!! GAAAGAATACTATTTATCAA+TGG + chr5_2:59119430-59119449 Msa0778580:intron 20.0%
!! ATATTTGTGTAACAATTTGT+TGG + chr5_2:59119665-59119684 Msa0778580:intron 20.0%
!!! AGTGAAAATAGATTTTATAC+AGG + chr5_2:59119799-59119818 Msa0778580:intron 20.0%
!!! TCACTTTTGATCAATTTTTT+AGG - chr5_2:59120094-59120113 None:intergenic 20.0%
!!! CTTAAAAATTGCTTTTATTG+TGG - chr5_2:59120187-59120206 None:intergenic 20.0%
!! ATAAAAATTAGACTCATTGA+TGG + chr5_2:59120294-59120313 Msa0778580:intron 20.0%
!! AGTTTAAAAGTTATGTCAAA+AGG - chr5_2:59120566-59120585 None:intergenic 20.0%
!! CTTTCTATTAATCAAGTTTA+TGG - chr5_2:59121172-59121191 None:intergenic 20.0%
!!! ACTAAGATTTTAGTATCTAT+AGG + chr5_2:59121557-59121576 Msa0778580:intron 20.0%
!! TAATTCAATATTGCATAACT+TGG - chr5_2:59122039-59122058 None:intergenic 20.0%
!!! CTCTATTTCTAAAAAATATG+TGG + chr5_2:59122247-59122266 Msa0778580:intron 20.0%
!! GTATCAATATGAATATGAAT+AGG + chr5_2:59122407-59122426 Msa0778580:intron 20.0%
!!! AAAAATGATTTTAAGGAATG+GGG - chr5_2:59122876-59122895 None:intergenic 20.0%
!!! TTAAAAAAAAGCATTTCTAG+TGG - chr5_2:59122994-59123013 None:intergenic 20.0%
!! TAAAACTAATGTAGGATTAA+CGG + chr5_2:59123342-59123361 Msa0778580:three_prime_UTR 20.0%
!!! GATTTTAAGTTGCATTAAAT+CGG - chr5_2:59123468-59123487 None:intergenic 20.0%
! TGATTACTGATCAGAAAATT+AGG + chr5_2:59117340-59117359 Msa0778580:intron 25.0%
! GATTACTGATCAGAAAATTA+GGG + chr5_2:59117341-59117360 Msa0778580:intron 25.0%
! ATAGGAAGATGATTAACTTA+TGG + chr5_2:59117387-59117406 Msa0778580:intron 25.0%
! TAGGAAGATGATTAACTTAT+GGG + chr5_2:59117388-59117407 Msa0778580:intron 25.0%
! GACTTATATTCACTGATAAA+TGG + chr5_2:59117495-59117514 Msa0778580:intron 25.0%
! TTTCTATTATGCAATGCTTA+GGG - chr5_2:59117683-59117702 None:intergenic 25.0%
!! TTTTCTATTATGCAATGCTT+AGG - chr5_2:59117684-59117703 None:intergenic 25.0%
! AAGAATTCAACAATTGATCA+CGG - chr5_2:59117757-59117776 None:intergenic 25.0%
!!! GTGTTTTTGAGTGAAAATTA+TGG + chr5_2:59117839-59117858 Msa0778580:intron 25.0%
! CAGTGAAATTCACAATTTAT+GGG - chr5_2:59117876-59117895 None:intergenic 25.0%
! ACAGTGAAATTCACAATTTA+TGG - chr5_2:59117877-59117896 None:intergenic 25.0%
!! TAAACAGAATACAGTTTTCA+AGG + chr5_2:59118101-59118120 Msa0778580:CDS 25.0%
!! AAACAGAATACAGTTTTCAA+GGG + chr5_2:59118102-59118121 Msa0778580:CDS 25.0%
!! TATCTTTCTTCTTATCGTTT+TGG + chr5_2:59118438-59118457 Msa0778580:intron 25.0%
! TTTCAATTGCAATTGAAAAC+TGG + chr5_2:59118474-59118493 Msa0778580:intron 25.0%
! GTTAGCATATAATTAGAATC+AGG - chr5_2:59118654-59118673 None:intergenic 25.0%
!!! AACAGAGACAACATTTTTTT+TGG - chr5_2:59118700-59118719 None:intergenic 25.0%
! CTGGAAAAGAATTCTTTAAT+CGG + chr5_2:59118787-59118806 Msa0778580:intron 25.0%
! GATTGTATAGTGGTTATTAA+AGG - chr5_2:59118818-59118837 None:intergenic 25.0%
! TTGAGTAATTGATTGTATAG+TGG - chr5_2:59118828-59118847 None:intergenic 25.0%
! AATTTAGCAATCATGATTAG+AGG + chr5_2:59118872-59118891 Msa0778580:intron 25.0%
! TGATTAGAGGAGTTATAATA+TGG + chr5_2:59118885-59118904 Msa0778580:intron 25.0%
! ATTTAACAGATTTACCTCTA+AGG - chr5_2:59119560-59119579 None:intergenic 25.0%
! AATTTCCGATACTATATTGT+TGG + chr5_2:59119598-59119617 Msa0778580:intron 25.0%
! ACTAACCAACAATATAGTAT+CGG - chr5_2:59119606-59119625 None:intergenic 25.0%
! TTGATACCATCTTAGAATAT+AGG - chr5_2:59119956-59119975 None:intergenic 25.0%
! AAAAATTGATCAAAAGTGAG+AGG + chr5_2:59120095-59120114 Msa0778580:intron 25.0%
! ACAGATTAAAAGGATAAACA+AGG + chr5_2:59120319-59120338 Msa0778580:intron 25.0%
! TGTATGGGATAGTAATATAA+AGG - chr5_2:59120471-59120490 None:intergenic 25.0%
! CTCATTATAGAAATCTGTAT+GGG - chr5_2:59120486-59120505 None:intergenic 25.0%
! TCTCATTATAGAAATCTGTA+TGG - chr5_2:59120487-59120506 None:intergenic 25.0%
! TTAATATTTACTCATTCACC+CGG + chr5_2:59121029-59121048 Msa0778580:intron 25.0%
! CTTTCAGAAAATAATGTTAG+AGG + chr5_2:59121363-59121382 Msa0778580:intron 25.0%
!! TTCTTTTCCATTTTCTTTTC+AGG + chr5_2:59121475-59121494 Msa0778580:intron 25.0%
! AATAGAACCTGAAAAGAAAA+TGG - chr5_2:59121485-59121504 None:intergenic 25.0%
! ATGAATGCATAAATAGTGAT+AGG - chr5_2:59121690-59121709 None:intergenic 25.0%
! AATCATACTAACAAACATCA+TGG - chr5_2:59121913-59121932 None:intergenic 25.0%
!! ATGATGTTTGTTAGTATGAT+TGG + chr5_2:59121912-59121931 Msa0778580:intron 25.0%
!! ATTTTCATCATTCTTTGACA+AGG + chr5_2:59121971-59121990 Msa0778580:intron 25.0%
! CATTCAATAAATGATGTATG+TGG + chr5_2:59122117-59122136 Msa0778580:intron 25.0%
! CATTCAATAAATGATGTATG+TGG - chr5_2:59122117-59122136 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr5_2:59122190-59122209 Msa0778580:intron 25.0%
!! TTTTACACTTGCTCTTTATT+TGG - chr5_2:59122317-59122336 None:intergenic 25.0%
! AGTGTAAAATATGTGAGTAT+AGG + chr5_2:59122328-59122347 Msa0778580:intron 25.0%
! TCATGATATATATGAACGTA+TGG - chr5_2:59122362-59122381 None:intergenic 25.0%
! ATATGAGATGATAATATGCT+AGG - chr5_2:59122461-59122480 None:intergenic 25.0%
! TTTCAGTTCATATATAGCTT+TGG - chr5_2:59123165-59123184 None:intergenic 25.0%
! TATATGAACTGAAAAAGCAA+TGG + chr5_2:59123171-59123190 Msa0778580:CDS 25.0%
! ATATGAACTGAAAAAGCAAT+GGG + chr5_2:59123172-59123191 Msa0778580:CDS 25.0%
!!! CTACATTAGTTTTAATTCTG+GGG - chr5_2:59123336-59123355 None:intergenic 25.0%
!!! CCTACATTAGTTTTAATTCT+GGG - chr5_2:59123337-59123356 None:intergenic 25.0%
!!! TCCTACATTAGTTTTAATTC+TGG - chr5_2:59123338-59123357 None:intergenic 25.0%
!!! ACTATACTTGTTGTAATGTA+AGG + chr5_2:59123701-59123720 Msa0778580:intron 25.0%
AGGAAGATGATTAACTTATG+GGG + chr5_2:59117389-59117408 Msa0778580:intron 30.0%
! AGATATTTCAAGTGCTATGA+AGG + chr5_2:59117954-59117973 Msa0778580:five_prime_UTR 30.0%
TTCTTTCTTTGATCTTCTGA+TGG + chr5_2:59117991-59118010 Msa0778580:exon 30.0%
AACTGTATTCTGTTTATCCT+TGG - chr5_2:59118097-59118116 None:intergenic 30.0%
! ATGATGTTTCTGATTTGACT+AGG + chr5_2:59118311-59118330 Msa0778580:CDS 30.0%
!! ACGATCATTTTTCTCATCTT+CGG - chr5_2:59118550-59118569 None:intergenic 30.0%
! TATAATTAGAATCAGGTTGC+TGG - chr5_2:59118647-59118666 None:intergenic 30.0%
TATGCTAACAGTATTGTTTC+TGG + chr5_2:59118665-59118684 Msa0778580:intron 30.0%
!!! AGAGACAACATTTTTTTTGG+TGG - chr5_2:59118697-59118716 None:intergenic 30.0%
ATTGTTGGAGATATATGAAC+TGG + chr5_2:59118768-59118787 Msa0778580:intron 30.0%
CAATATTATATCCTCATGTG+TGG + chr5_2:59119022-59119041 Msa0778580:intron 30.0%
AACAATTATTTCCACACATG+AGG - chr5_2:59119036-59119055 None:intergenic 30.0%
ACAGAATTTCTCAAACTTGA+TGG + chr5_2:59119126-59119145 Msa0778580:CDS 30.0%
! AATGTAAGTTGACCATGTAA+GGG - chr5_2:59119272-59119291 None:intergenic 30.0%
! AAATGTAAGTTGACCATGTA+AGG - chr5_2:59119273-59119292 None:intergenic 30.0%
ATACAGTAGCAATACGATTA+AGG - chr5_2:59119373-59119392 None:intergenic 30.0%
! GTCTAATGTTTGAAGTGATA+TGG + chr5_2:59119855-59119874 Msa0778580:intron 30.0%
!! CTGAAAAGGTGTTTATAAGA+GGG + chr5_2:59119879-59119898 Msa0778580:intron 30.0%
AAAACCAATTTACAAGGTGA+GGG - chr5_2:59119911-59119930 None:intergenic 30.0%
AAAAACCAATTTACAAGGTG+AGG - chr5_2:59119912-59119931 None:intergenic 30.0%
CCTACAAAAACCAATTTACA+AGG - chr5_2:59119917-59119936 None:intergenic 30.0%
!!! CCTTGTAAATTGGTTTTTGT+AGG + chr5_2:59119914-59119933 Msa0778580:intron 30.0%
TGAATCATTTGGATGTGATA+TGG + chr5_2:59120068-59120087 Msa0778580:intron 30.0%
! ATTGATGGACACAGATTAAA+AGG + chr5_2:59120309-59120328 Msa0778580:intron 30.0%
!! AATGAGAGATAAGAAGTGTT+TGG + chr5_2:59120500-59120519 Msa0778580:intron 30.0%
!! AAAAGGAGTCTTGTATTTTC+TGG - chr5_2:59120549-59120568 None:intergenic 30.0%
! GACATAACTTTTAAACTGTC+AGG + chr5_2:59120569-59120588 Msa0778580:intron 30.0%
AGTATAAAATATCACCTCCA+AGG - chr5_2:59120655-59120674 None:intergenic 30.0%
ATGTTTCATTCGATGTTTGT+TGG + chr5_2:59120875-59120894 Msa0778580:intron 30.0%
! CTCATAGTGTATTGATAAGA+AGG + chr5_2:59120904-59120923 Msa0778580:intron 30.0%
! ACCATGGTTTTCTTTTTGAA+TGG + chr5_2:59120982-59121001 Msa0778580:intron 30.0%
TCCATTCAAAAAGAAAACCA+TGG - chr5_2:59120986-59121005 None:intergenic 30.0%
TAATATTTACTCATTCACCC+GGG + chr5_2:59121030-59121049 Msa0778580:intron 30.0%
AAATATGAAAAACGCAGACA+AGG - chr5_2:59121271-59121290 None:intergenic 30.0%
! AGTCCTATTTTCAGAGATAA+GGG + chr5_2:59121336-59121355 Msa0778580:intron 30.0%
TCCTGATTCATACTGAATTA+GGG - chr5_2:59121525-59121544 None:intergenic 30.0%
TTCCTGATTCATACTGAATT+AGG - chr5_2:59121526-59121545 None:intergenic 30.0%
GTCGATCATAAAACTTTATC+AGG - chr5_2:59121664-59121683 None:intergenic 30.0%
TAAACACAGTGTATCTTTGT+TGG + chr5_2:59121785-59121804 Msa0778580:CDS 30.0%
CTGAAAGATCTTAACATCAA+AGG - chr5_2:59121853-59121872 None:intergenic 30.0%
CTTTGATGTTAAGATCTTTC+AGG + chr5_2:59121851-59121870 Msa0778580:intron 30.0%
TAACAAACATCATGGCATAT+AGG - chr5_2:59121905-59121924 None:intergenic 30.0%
GAATAGTACAAACTCATACT+AGG - chr5_2:59121940-59121959 None:intergenic 30.0%
! TATTGCATAACTTGGTTTGA+GGG - chr5_2:59122031-59122050 None:intergenic 30.0%
! ATATTGCATAACTTGGTTTG+AGG - chr5_2:59122032-59122051 None:intergenic 30.0%
TAACATTCATAGAGATCACT+TGG + chr5_2:59122280-59122299 Msa0778580:intron 30.0%
! TACTTAAAGAGAGAGTACAA+AGG - chr5_2:59122512-59122531 None:intergenic 30.0%
AATGTGTCAACTTTGCTAAA+GGG - chr5_2:59123084-59123103 None:intergenic 30.0%
AAATGTGTCAACTTTGCTAA+AGG - chr5_2:59123085-59123104 None:intergenic 30.0%
TTTAGCAAAGTTGACACATT+TGG + chr5_2:59123084-59123103 Msa0778580:intron 30.0%
CCCAGAATTAAAACTAATGT+AGG + chr5_2:59123334-59123353 Msa0778580:three_prime_UTR 30.0%
ATTATTAGATGGAGATTGGA+TGG + chr5_2:59123420-59123439 Msa0778580:three_prime_UTR 30.0%
! TGCATTAAATCGGATTTTAG+TGG - chr5_2:59123458-59123477 None:intergenic 30.0%
! ATATGGGTTAATCCTTGAAA+TGG - chr5_2:59123556-59123575 None:intergenic 30.0%
TCACTTTCCAATGATCATAT+GGG - chr5_2:59123572-59123591 None:intergenic 30.0%
AATGCATATAACCAGCATAT+TGG - chr5_2:59123612-59123631 None:intergenic 30.0%
! ATGCATTTTTATGCCAAAGA+TGG - chr5_2:59123790-59123809 None:intergenic 30.0%
AAGCTTAACAGCATCAATAC+AGG - chr5_2:59117247-59117266 None:intergenic 35.0%
!! ACCATGTGTTGCTTTGAAAT+AGG + chr5_2:59117369-59117388 Msa0778580:intron 35.0%
TCCTATTTCAAAGCAACACA+TGG - chr5_2:59117373-59117392 None:intergenic 35.0%
AAGAAAGAATGAGATACACC+TGG - chr5_2:59117980-59117999 None:intergenic 35.0%
GTTGCTCTATTAGTCAAGAT+AGG - chr5_2:59118046-59118065 None:intergenic 35.0%
GATCAACCTTATTCAATGAC+TGG + chr5_2:59118173-59118192 Msa0778580:CDS 35.0%
!! CCTTATTCAATGACTGGTTT+CGG + chr5_2:59118179-59118198 Msa0778580:CDS 35.0%
GTCTTGGAGATTAAACTAAC+TGG - chr5_2:59118223-59118242 None:intergenic 35.0%
TCTGTCTCATGTAAATCAAC+AGG + chr5_2:59118247-59118266 Msa0778580:CDS 35.0%
ATTTCTTCAGTGGCATAATG+AGG + chr5_2:59119064-59119083 Msa0778580:intron 35.0%
GAGAAATTCTGTCCCTAAAA+AGG - chr5_2:59119118-59119137 None:intergenic 35.0%
! ATGTAAGTTGACCATGTAAG+GGG - chr5_2:59119271-59119290 None:intergenic 35.0%
!! TAGCTTTTTCTTTGACACCA+CGG - chr5_2:59119346-59119365 None:intergenic 35.0%
ACTGTCACATTAATCTGCAA+TGG - chr5_2:59119782-59119801 None:intergenic 35.0%
! CCTCTTATAAACACCTTTTC+AGG - chr5_2:59119881-59119900 None:intergenic 35.0%
!! CCTGAAAAGGTGTTTATAAG+AGG + chr5_2:59119878-59119897 Msa0778580:intron 35.0%
ATATCCCTCACCTTGTAAAT+TGG + chr5_2:59119904-59119923 Msa0778580:intron 35.0%
!! GGTTTTTGTAGGTTTGAGTT+AGG + chr5_2:59119925-59119944 Msa0778580:intron 35.0%
! GCTGAACCTATATTCTAAGA+TGG + chr5_2:59119947-59119966 Msa0778580:intron 35.0%
CACTGTAGTTGTCTAATACT+TGG + chr5_2:59120024-59120043 Msa0778580:intron 35.0%
ACATCCAAATGATTCACTGT+GGG - chr5_2:59120064-59120083 None:intergenic 35.0%
ACCTACAAAACAGGTTTGTA+GGG - chr5_2:59120130-59120149 None:intergenic 35.0%
AACCTACAAAACAGGTTTGT+AGG - chr5_2:59120131-59120150 None:intergenic 35.0%
ACGATATTAGAACTTGGGTT+TGG - chr5_2:59120163-59120182 None:intergenic 35.0%
GTGGTACGATATTAGAACTT+GGG - chr5_2:59120168-59120187 None:intergenic 35.0%
TGTGGTACGATATTAGAACT+TGG - chr5_2:59120169-59120188 None:intergenic 35.0%
TGTACAGTATCAGTGTAAAC+AGG - chr5_2:59120258-59120277 None:intergenic 35.0%
! AAAGGATAAACAAGGTGTTC+TGG + chr5_2:59120327-59120346 Msa0778580:intron 35.0%
AGCAACTCTGTAATTAAGTG+TGG - chr5_2:59120428-59120447 None:intergenic 35.0%
CAAAAACATCCATGACATGA+TGG + chr5_2:59120783-59120802 Msa0778580:CDS 35.0%
TAATCTTGTAAACTGGACCA+TGG + chr5_2:59120966-59120985 Msa0778580:intron 35.0%
TAAATACTACGGTCCAGTTT+GGG - chr5_2:59121119-59121138 None:intergenic 35.0%
TTAAATACTACGGTCCAGTT+TGG - chr5_2:59121120-59121139 None:intergenic 35.0%
CATTGTCAGAAAAGCAAACT+CGG - chr5_2:59121307-59121326 None:intergenic 35.0%
!! TTGCTTTTCTGACAATGTTG+TGG + chr5_2:59121310-59121329 Msa0778580:intron 35.0%
! CAGTCCTATTTTCAGAGATA+AGG + chr5_2:59121335-59121354 Msa0778580:intron 35.0%
! GATCCCTTATCTCTGAAAAT+AGG - chr5_2:59121342-59121361 None:intergenic 35.0%
CGAATCATGCTTGAAAAGAA+TGG + chr5_2:59121387-59121406 Msa0778580:CDS 35.0%
AGAACCACAAATTCCTTTCT+TGG + chr5_2:59121411-59121430 Msa0778580:CDS 35.0%
GAACCACAAATTCCTTTCTT+GGG + chr5_2:59121412-59121431 Msa0778580:CDS 35.0%
AACCACAAATTCCTTTCTTG+GGG + chr5_2:59121413-59121432 Msa0778580:CDS 35.0%
CCTGATTCATACTGAATTAG+GGG - chr5_2:59121524-59121543 None:intergenic 35.0%
AGTATCTATAGGAAGCTTAC+TGG + chr5_2:59121568-59121587 Msa0778580:intron 35.0%
TCTTATAGACCTTGATGCAA+TGG + chr5_2:59121758-59121777 Msa0778580:CDS 35.0%
GTCAAAACATTCTCAATTGC+AGG + chr5_2:59121993-59122012 Msa0778580:intron 35.0%
! TAATTAAGAAGTACACCCTC+TGG + chr5_2:59122060-59122079 Msa0778580:intron 35.0%
TGCTTATAATAGTGACCAGA+GGG - chr5_2:59122078-59122097 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG - chr5_2:59122079-59122098 None:intergenic 35.0%
!!! CTATTTTTTACTACACCCTC+CGG - chr5_2:59122212-59122231 None:intergenic 35.0%
TGAGATGATAATATGCTAGG+TGG - chr5_2:59122458-59122477 None:intergenic 35.0%
CGCTAGCCATTTCAATTATA+AGG - chr5_2:59122556-59122575 None:intergenic 35.0%
TGGACAAGGAAAATAAGCAA+AGG - chr5_2:59122598-59122617 None:intergenic 35.0%
!! ACATTTGGTTCTTGTTGTAG+AGG + chr5_2:59123099-59123118 Msa0778580:intron 35.0%
AAGCAATGGGAAATAGAAGA+AGG + chr5_2:59123185-59123204 Msa0778580:CDS 35.0%
AGCAATGGGAAATAGAAGAA+GGG + chr5_2:59123186-59123205 Msa0778580:CDS 35.0%
AAATAGAAGAAGGGGATAGT+TGG + chr5_2:59123195-59123214 Msa0778580:CDS 35.0%
! TCAGGTTTCATTTTCTTCCT+TGG - chr5_2:59123243-59123262 None:intergenic 35.0%
!!! CATTAGTTTTAATTCTGGGG+AGG - chr5_2:59123333-59123352 None:intergenic 35.0%
! GGTAAACGTCGATTATTAGA+TGG + chr5_2:59123409-59123428 Msa0778580:three_prime_UTR 35.0%
GTCGATTATTAGATGGAGAT+TGG + chr5_2:59123416-59123435 Msa0778580:three_prime_UTR 35.0%
GGATTAACCCATATGATCAT+TGG + chr5_2:59123562-59123581 Msa0778580:three_prime_UTR 35.0%
! GTCACTTTCCAATGATCATA+TGG - chr5_2:59123573-59123592 None:intergenic 35.0%
AAACAACCCAGATAAAAGCA+TGG - chr5_2:59123753-59123772 None:intergenic 35.0%
TTTATGCCAAAGATGGCAAA+AGG - chr5_2:59123783-59123802 None:intergenic 35.0%
TAACTATGCCTTTGTTCCAC+AGG + chr5_2:59117081-59117100 Msa0778580:five_prime_UTR 40.0%
AAAACTGACCTGTGGAACAA+AGG - chr5_2:59117092-59117111 None:intergenic 40.0%
GAAAGCTAAAAACTGACCTG+TGG - chr5_2:59117100-59117119 None:intergenic 40.0%
TAAATGGATAGACGCTAGAG+CGG + chr5_2:59117511-59117530 Msa0778580:intron 40.0%
! CTTTGGCTCATTCGTATGTT+GGG + chr5_2:59117583-59117602 Msa0778580:intron 40.0%
TGATCTTCTGATGGCACTTA+CGG + chr5_2:59118000-59118019 Msa0778580:exon 40.0%
ACGGCAAACAAAGTTTCAAG+CGG + chr5_2:59118019-59118038 Msa0778580:CDS 40.0%
GCAACACTTTGTAGATCACA+TGG + chr5_2:59118061-59118080 Msa0778580:CDS 40.0%
TCAAGGGTTAGACTCGAAAA+TGG + chr5_2:59118118-59118137 Msa0778580:CDS 40.0%
CCGAAACCAGTCATTGAATA+AGG - chr5_2:59118182-59118201 None:intergenic 40.0%
ACATGAGACAGAAGATGTCT+TGG - chr5_2:59118239-59118258 None:intergenic 40.0%
TGTCTCCTGTACATGTGAAA+GGG - chr5_2:59118525-59118544 None:intergenic 40.0%
ATGTCTCCTGTACATGTGAA+AGG - chr5_2:59118526-59118545 None:intergenic 40.0%
GAGAAACTTTGCATCGTTAC+AGG - chr5_2:59118613-59118632 None:intergenic 40.0%
ACGATGCAAAGTTTCTCTCA+CGG + chr5_2:59118616-59118635 Msa0778580:CDS 40.0%
! GCCAAGATGTTGCCTTTTTA+GGG + chr5_2:59119103-59119122 Msa0778580:CDS 40.0%
TCCCTAAAAAGGCAACATCT+TGG - chr5_2:59119107-59119126 None:intergenic 40.0%
TACACTACATTCCCCTTACA+TGG + chr5_2:59119257-59119276 Msa0778580:intron 40.0%
ATATCCACTGCAGATCTTGA+AGG + chr5_2:59119480-59119499 Msa0778580:intron 40.0%
ATATCCTTCAAGATCTGCAG+TGG - chr5_2:59119487-59119506 None:intergenic 40.0%
TGCAATGGAGGAGAAAAACT+AGG - chr5_2:59119767-59119786 None:intergenic 40.0%
GTCACATTAATCTGCAATGG+AGG - chr5_2:59119779-59119798 None:intergenic 40.0%
TGAAGTGATATGGCCTGAAA+AGG + chr5_2:59119865-59119884 Msa0778580:intron 40.0%
CACATCCAAATGATTCACTG+TGG - chr5_2:59120065-59120084 None:intergenic 40.0%
! ACCCTACAAACCTGTTTTGT+AGG + chr5_2:59120126-59120145 Msa0778580:intron 40.0%
CCAACTCAAACCTACAAAAC+AGG - chr5_2:59120139-59120158 None:intergenic 40.0%
! CCTGTTTTGTAGGTTTGAGT+TGG + chr5_2:59120136-59120155 Msa0778580:intron 40.0%
TATCACCTCCAAGGACATAA+GGG - chr5_2:59120646-59120665 None:intergenic 40.0%
ATATCACCTCCAAGGACATA+AGG - chr5_2:59120647-59120666 None:intergenic 40.0%
TACTTCGCATGTGTTCACTT+AGG + chr5_2:59120671-59120690 Msa0778580:intron 40.0%
AAATACTACGGTCCAGTTTG+GGG - chr5_2:59121118-59121137 None:intergenic 40.0%
TTCCGAGATGTAGACACAAT+TGG + chr5_2:59121211-59121230 Msa0778580:intron 40.0%
AGCCAATTGTGTCTACATCT+CGG - chr5_2:59121216-59121235 None:intergenic 40.0%
TGAAAAACGCAGACAAGGAA+AGG - chr5_2:59121266-59121285 None:intergenic 40.0%
ATCCCCAAGAAAGGAATTTG+TGG - chr5_2:59121418-59121437 None:intergenic 40.0%
CCCCTAATTCAGTATGAATC+AGG + chr5_2:59121521-59121540 Msa0778580:intron 40.0%
ATAGGAAGCTTACTGGAGTA+TGG + chr5_2:59121575-59121594 Msa0778580:intron 40.0%
TGATTACACTGATCCTGAAG+AGG + chr5_2:59121626-59121645 Msa0778580:CDS 40.0%
GAAGCTAAACTAACCTCTTC+AGG - chr5_2:59121642-59121661 None:intergenic 40.0%
ATAGACCTTGATGCAATGGA+CGG + chr5_2:59121762-59121781 Msa0778580:CDS 40.0%
AACATCAAAGGAACCTTACC+TGG - chr5_2:59121841-59121860 None:intergenic 40.0%
ATCATGGCATATAGGTGCAT+TGG - chr5_2:59121897-59121916 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr5_2:59122193-59122212 Msa0778580:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr5_2:59122194-59122213 Msa0778580:intron 40.0%
! ACACTTGCTCTTTATTTGGC+AGG - chr5_2:59122313-59122332 None:intergenic 40.0%
GAAGTTTACATGCATGGACA+AGG - chr5_2:59122612-59122631 None:intergenic 40.0%
CGTCTAGAAGTTTACATGCA+TGG - chr5_2:59122618-59122637 None:intergenic 40.0%
TTTCCAAGAGTCCACATAGA+TGG - chr5_2:59122669-59122688 None:intergenic 40.0%
GCAATGGGAAATAGAAGAAG+GGG + chr5_2:59123187-59123206 Msa0778580:CDS 40.0%
GGATAGTTGGAGGTTTATGA+TGG + chr5_2:59123208-59123227 Msa0778580:CDS 40.0%
!! TATGATGGATGAAAGCACCA+AGG + chr5_2:59123223-59123242 Msa0778580:CDS 40.0%
! TAGGATTAACGGATCCAGAT+TGG + chr5_2:59123353-59123372 Msa0778580:three_prime_UTR 40.0%
AATCCTGCAGTCACTATAGT+TGG + chr5_2:59123388-59123407 Msa0778580:three_prime_UTR 40.0%
TTACCAACTATAGTGACTGC+AGG - chr5_2:59123394-59123413 None:intergenic 40.0%
TAGTCATCTCAGTCGTACAA+TGG - chr5_2:59123506-59123525 None:intergenic 40.0%
CTTGTAAGATGCCAATATGC+TGG + chr5_2:59123598-59123617 Msa0778580:three_prime_UTR 40.0%
GGCTGTTGAGCAAATTATGT+AGG - chr5_2:59123732-59123751 None:intergenic 40.0%
! TCAACAGCCATGCTTTTATC+TGG + chr5_2:59123743-59123762 Msa0778580:three_prime_UTR 40.0%
! CAACAGCCATGCTTTTATCT+GGG + chr5_2:59123744-59123763 Msa0778580:three_prime_UTR 40.0%
! GACTTTCCTTTTGCCATCTT+TGG + chr5_2:59123774-59123793 Msa0778580:three_prime_UTR 40.0%
AAATGGATAGACGCTAGAGC+GGG + chr5_2:59117512-59117531 Msa0778580:intron 45.0%
TACGAATGAGCCAAAGCCAA+AGG - chr5_2:59117579-59117598 None:intergenic 45.0%
! GCTTTGGCTCATTCGTATGT+TGG + chr5_2:59117582-59117601 Msa0778580:intron 45.0%
! TTTCAAGTGCTATGAAGGCC+AGG + chr5_2:59117959-59117978 Msa0778580:five_prime_UTR 45.0%
CACATGGATCTTCATCACCA+AGG + chr5_2:59118077-59118096 Msa0778580:CDS 45.0%
!! GACTGGTTTCGGTTCATCAA+TGG + chr5_2:59118190-59118209 Msa0778580:CDS 45.0%
AGAGACCCTTTCACATGTAC+AGG + chr5_2:59118517-59118536 Msa0778580:intron 45.0%
GATCGTATTCGTTCTGTTCG+TGG + chr5_2:59118564-59118583 Msa0778580:CDS 45.0%
CTTCAGTGGCATAATGAGGA+TGG + chr5_2:59119068-59119087 Msa0778580:intron 45.0%
! CGCCAAGATGTTGCCTTTTT+AGG + chr5_2:59119102-59119121 Msa0778580:CDS 45.0%
CTCTACTATGCTGCATAGCT+CGG + chr5_2:59119294-59119313 Msa0778580:intron 45.0%
TCTACTATGCTGCATAGCTC+GGG + chr5_2:59119295-59119314 Msa0778580:intron 45.0%
GATACTGAGAAAATCGACCG+TGG + chr5_2:59119326-59119345 Msa0778580:CDS 45.0%
! ATCGGCAGCACTTTTCAATC+TGG - chr5_2:59119518-59119537 None:intergenic 45.0%
! ATCCGTGAGCCACTCATTTT+CGG + chr5_2:59119988-59120007 Msa0778580:intron 45.0%
GAGTCCCACAGTGAATCATT+TGG + chr5_2:59120057-59120076 Msa0778580:intron 45.0%
! AGGTGTTCTGGTAATGAGCA+TGG + chr5_2:59120339-59120358 Msa0778580:intron 45.0%
! GGTGTTCTGGTAATGAGCAT+GGG + chr5_2:59120340-59120359 Msa0778580:intron 45.0%
! TTCTGGTAATGAGCATGGGT+TGG + chr5_2:59120344-59120363 Msa0778580:intron 45.0%
GTGTGGCATGACATCTTGTT+GGG + chr5_2:59120382-59120401 Msa0778580:intron 45.0%
TCTTGCTCACCATCATGTCA+TGG - chr5_2:59120795-59120814 None:intergenic 45.0%
! GTATTGATAAGAAGGCTGCG+TGG + chr5_2:59120912-59120931 Msa0778580:intron 45.0%
CCAGTTTACAAGATTACCCC+TGG - chr5_2:59120962-59120981 None:intergenic 45.0%
CCAGGGGTAATCTTGTAAAC+TGG + chr5_2:59120959-59120978 Msa0778580:intron 45.0%
AATACTACGGTCCAGTTTGG+GGG - chr5_2:59121117-59121136 None:intergenic 45.0%
CTACATCTCGGAATTCAGAG+CGG - chr5_2:59121204-59121223 None:intergenic 45.0%
TTCCTTTCTTGGGGATGTGA+CGG + chr5_2:59121422-59121441 Msa0778580:CDS 45.0%
!! AGAACGGATTACTGCTCTTC+AGG + chr5_2:59121446-59121465 Msa0778580:CDS 45.0%
!! TCTGCACTTTCTGAAGCAGA+TGG + chr5_2:59121600-59121619 Msa0778580:CDS 45.0%
GTTTACCGTCCATTGCATCA+AGG - chr5_2:59121770-59121789 None:intergenic 45.0%
!! TGTTCTAGTTCCCCTGATGT+CGG + chr5_2:59121813-59121832 Msa0778580:CDS 45.0%
! TTCTAGACGAGCTTTAGCGA+AGG + chr5_2:59122629-59122648 Msa0778580:intron 45.0%
! TTGGTTCTTGTTGTAGAGGC+TGG + chr5_2:59123103-59123122 Msa0778580:intron 45.0%
AATGGCTGGATTGCTATCCT+CGG - chr5_2:59123129-59123148 None:intergenic 45.0%
TAGAAGAAGGGGATAGTTGG+AGG + chr5_2:59123198-59123217 Msa0778580:CDS 45.0%
!! TTAATTCTGGGGAGGCATTC+AGG - chr5_2:59123325-59123344 None:intergenic 45.0%
! TTTTGTGACTGCGACCAATC+TGG - chr5_2:59123370-59123389 None:intergenic 45.0%
GTCGTACAATGGAGATTGGA+TGG - chr5_2:59123495-59123514 None:intergenic 45.0%
CTCAGTCGTACAATGGAGAT+TGG - chr5_2:59123499-59123518 None:intergenic 45.0%
ACTGCATGCAGTCCATTTCA+AGG + chr5_2:59123541-59123560 Msa0778580:three_prime_UTR 45.0%
AATGGATAGACGCTAGAGCG+GGG + chr5_2:59117513-59117532 Msa0778580:intron 50.0%
TGAGCCAAAGCCAAAGGAGT+AGG - chr5_2:59117573-59117592 None:intergenic 50.0%
TCGTATGTTGGGTTACGACG+AGG + chr5_2:59117594-59117613 Msa0778580:intron 50.0%
TATGTTGGGTTACGACGAGG+AGG + chr5_2:59117597-59117616 Msa0778580:intron 50.0%
ATGTTGGGTTACGACGAGGA+GGG + chr5_2:59117598-59117617 Msa0778580:intron 50.0%
TGCTCTGCTGTCGAAGACAT+TGG + chr5_2:59117715-59117734 Msa0778580:intron 50.0%
GTCGAAGACATTGGCACAGT+TGG + chr5_2:59117724-59117743 Msa0778580:intron 50.0%
GTGGCTCACGGATCTTTGAT+AGG - chr5_2:59119981-59120000 None:intergenic 50.0%
GTCCGAAAATGAGTGGCTCA+CGG - chr5_2:59119993-59120012 None:intergenic 50.0%
! CCACTCATTTTCGGACCACT+CGG + chr5_2:59119997-59120016 Msa0778580:intron 50.0%
! CACTCATTTTCGGACCACTC+GGG + chr5_2:59119998-59120017 Msa0778580:intron 50.0%
!! TGGGTTGGTGTTGTCACACA+TGG + chr5_2:59120359-59120378 Msa0778580:intron 50.0%
!! GGGTTGGTGTTGTCACACAT+GGG + chr5_2:59120360-59120379 Msa0778580:intron 50.0%
GGTGTGGCATGACATCTTGT+TGG + chr5_2:59120381-59120400 Msa0778580:intron 50.0%
ATCTTCCATGGCACGTTGCT+TGG - chr5_2:59120622-59120641 None:intergenic 50.0%
!! GGACATAAGGGCATCTTCCA+TGG - chr5_2:59120634-59120653 None:intergenic 50.0%
GGAAGATGCCCTTATGTCCT+TGG + chr5_2:59120635-59120654 Msa0778580:CDS 50.0%
AGATGCCCTTATGTCCTTGG+AGG + chr5_2:59120638-59120657 Msa0778580:CDS 50.0%
TTGATAAGAAGGCTGCGTGG+AGG + chr5_2:59120915-59120934 Msa0778580:intron 50.0%
TGATAAGAAGGCTGCGTGGA+GGG + chr5_2:59120916-59120935 Msa0778580:intron 50.0%
CCTCCAACTCCTTTAACCCT+CGG + chr5_2:59121066-59121085 Msa0778580:intron 50.0%
TGGTTTGAGCCGAGGGTTAA+AGG - chr5_2:59121078-59121097 None:intergenic 50.0%
!! ACTCAACTGGTTTGAGCCGA+GGG - chr5_2:59121085-59121104 None:intergenic 50.0%
!! AACTCAACTGGTTTGAGCCG+AGG - chr5_2:59121086-59121105 None:intergenic 50.0%
ATACTACGGTCCAGTTTGGG+GGG - chr5_2:59121116-59121135 None:intergenic 50.0%
!! TTACCTGGTACCGACATCAG+GGG - chr5_2:59121826-59121845 None:intergenic 50.0%
!! CTTACCTGGTACCGACATCA+GGG - chr5_2:59121827-59121846 None:intergenic 50.0%
GCACCATCTATGTGGACTCT+TGG + chr5_2:59122663-59122682 Msa0778580:intron 50.0%
ATGTGGACTCTTGGAAACGC+AGG + chr5_2:59122672-59122691 Msa0778580:intron 50.0%
TGTGGACTCTTGGAAACGCA+GGG + chr5_2:59122673-59122692 Msa0778580:intron 50.0%
ACTCTTGGAAACGCAGGGAT+GGG + chr5_2:59122678-59122697 Msa0778580:intron 50.0%
TTTGGATGCTGCAGCTGCAA+TGG - chr5_2:59123147-59123166 None:intergenic 50.0%
! AGCGCCTACTCCTTTGGCTT+TGG + chr5_2:59117566-59117585 Msa0778580:intron 55.0%
CTGCATAGCTCGGGCAAGAA+AGG + chr5_2:59119304-59119323 Msa0778580:intron 55.0%
!! AAAGTGCTGCCGATGAGCAC+TGG + chr5_2:59119524-59119543 Msa0778580:CDS 55.0%
CCGAGTGGTCCGAAAATGAG+TGG - chr5_2:59120000-59120019 None:intergenic 55.0%
CAACTACAGTGTGACCCGAG+TGG - chr5_2:59120015-59120034 None:intergenic 55.0%
! GGTGTTGTCACACATGGGTG+TGG + chr5_2:59120365-59120384 Msa0778580:intron 55.0%
ACGTTGCTTGGCACGGAAGT+CGG - chr5_2:59120610-59120629 None:intergenic 55.0%
ATTACCCCTGGACCGTACCA+CGG - chr5_2:59120950-59120969 None:intergenic 55.0%
CCGAGGGTTAAAGGAGTTGG+AGG - chr5_2:59121069-59121088 None:intergenic 55.0%
GAGCCGAGGGTTAAAGGAGT+TGG - chr5_2:59121072-59121091 None:intergenic 55.0%
TACTACGGTCCAGTTTGGGG+GGG - chr5_2:59121115-59121134 None:intergenic 55.0%
TGCCGTCACATCCCCAAGAA+AGG - chr5_2:59121427-59121446 None:intergenic 55.0%
TTGGGGATGTGACGGCAGAA+CGG + chr5_2:59121430-59121449 Msa0778580:CDS 55.0%
!! CCTTACCTGGTACCGACATC+AGG - chr5_2:59121828-59121847 None:intergenic 55.0%
CCTGATGTCGGTACCAGGTA+AGG + chr5_2:59121825-59121844 Msa0778580:intron 55.0%
! ACGAGCTTTAGCGAAGGCAC+TGG + chr5_2:59122635-59122654 Msa0778580:intron 55.0%
TGGCAGCAGCACCATCTATG+TGG + chr5_2:59122655-59122674 Msa0778580:intron 55.0%
GACTCTTGGAAACGCAGGGA+TGG + chr5_2:59122677-59122696 Msa0778580:intron 55.0%
CTCTTGGAAACGCAGGGATG+GGG + chr5_2:59122679-59122698 Msa0778580:intron 55.0%
TCTTGGAAACGCAGGGATGG+GGG + chr5_2:59122680-59122699 Msa0778580:intron 55.0%
AAGGAGTAGGCGCTCTCGCA+CGG - chr5_2:59117560-59117579 None:intergenic 60.0%
!! TGCGAGAGCGCCTACTCCTT+TGG + chr5_2:59117560-59117579 Msa0778580:intron 60.0%
TGGGTTACGACGAGGAGGGT+TGG + chr5_2:59117602-59117621 Msa0778580:intron 60.0%
GGGTTACGACGAGGAGGGTT+GGG + chr5_2:59117603-59117622 Msa0778580:intron 60.0%
!! GCCGATGAGCACTGGAGTGA+CGG + chr5_2:59119532-59119551 Msa0778580:CDS 60.0%
CCCGTCACTCCAGTGCTCAT+CGG - chr5_2:59119536-59119555 None:intergenic 60.0%
!! CCGATGAGCACTGGAGTGAC+GGG + chr5_2:59119533-59119552 Msa0778580:CDS 60.0%
!! CGATGAGCACTGGAGTGACG+GGG + chr5_2:59119534-59119553 Msa0778580:CDS 60.0%
CCATGGCACGTTGCTTGGCA+CGG - chr5_2:59120617-59120636 None:intergenic 60.0%
TTACCCCTGGACCGTACCAC+GGG - chr5_2:59120949-59120968 None:intergenic 60.0%
GGGGGGTTGGGTAACTCAAC+TGG - chr5_2:59121098-59121117 None:intergenic 60.0%
GTTACCCAACCCCCCCAAAC+TGG + chr5_2:59121103-59121122 Msa0778580:intron 60.0%
GTTCCCCTGATGTCGGTACC+AGG + chr5_2:59121820-59121839 Msa0778580:CDS 60.0%
! CTTGTTGTAGAGGCTGGCCG+AGG + chr5_2:59123109-59123128 Msa0778580:intron 60.0%
GATGCTGCAGCTGCAATGGC+TGG - chr5_2:59123143-59123162 None:intergenic 60.0%
! CTGGAGTGACGGGGCCTTAG+AGG + chr5_2:59119543-59119562 Msa0778580:CDS 65.0%
GCTTGGCACGGAAGTCGGCA+AGG - chr5_2:59120605-59120624 None:intergenic 65.0%
CCGTGCCAAGCAACGTGCCA+TGG + chr5_2:59120614-59120633 Msa0778580:CDS 65.0%
AGGGTGAAGCCCCCGTGGTA+CGG + chr5_2:59120935-59120954 Msa0778580:intron 65.0%
TACCCCTGGACCGTACCACG+GGG - chr5_2:59120948-59120967 None:intergenic 65.0%
CGGTCCAGTTTGGGGGGGTT+GGG - chr5_2:59121110-59121129 None:intergenic 65.0%
ACGGTCCAGTTTGGGGGGGT+TGG - chr5_2:59121111-59121130 None:intergenic 65.0%
!! CGCAGGGATGGGGGCATTAC+AGG + chr5_2:59122689-59122708 Msa0778580:intron 65.0%
AAGCCCCCGTGGTACGGTCC+AGG + chr5_2:59120941-59120960 Msa0778580:intron 70.0%
AGCCCCCGTGGTACGGTCCA+GGG + chr5_2:59120942-59120961 Msa0778580:intron 70.0%
ACCCCTGGACCGTACCACGG+GGG - chr5_2:59120947-59120966 None:intergenic 70.0%
CGTGGAGGGTGAAGCCCCCG+TGG + chr5_2:59120930-59120949 Msa0778580:intron 75.0%
GCCCCCGTGGTACGGTCCAG+GGG + chr5_2:59120943-59120962 Msa0778580:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 59117056 59123826 59117056 ID=Msa0778580;Name=Msa0778580
chr5_2 mRNA 59117056 59123826 59117056 ID=Msa0778580-mRNA-1;Parent=Msa0778580;Name=Msa0778580-mRNA-1;_AED=0.21;_eAED=0.21;_QI=108|0.84|0.85|1|0.76|0.64|14|497|386
chr5_2 exon 59117056 59117102 59117056 ID=Msa0778580-mRNA-1:exon:17434;Parent=Msa0778580-mRNA-1
chr5_2 exon 59117949 59118332 59117949 ID=Msa0778580-mRNA-1:exon:17435;Parent=Msa0778580-mRNA-1
chr5_2 exon 59118539 59118637 59118539 ID=Msa0778580-mRNA-1:exon:17436;Parent=Msa0778580-mRNA-1
chr5_2 exon 59119074 59119147 59119074 ID=Msa0778580-mRNA-1:exon:17437;Parent=Msa0778580-mRNA-1
chr5_2 exon 59119312 59119388 59119312 ID=Msa0778580-mRNA-1:exon:17438;Parent=Msa0778580-mRNA-1
chr5_2 exon 59119493 59119564 59119493 ID=Msa0778580-mRNA-1:exon:17439;Parent=Msa0778580-mRNA-1
chr5_2 exon 59120591 59120659 59120591 ID=Msa0778580-mRNA-1:exon:17440;Parent=Msa0778580-mRNA-1
chr5_2 exon 59120778 59120824 59120778 ID=Msa0778580-mRNA-1:exon:17441;Parent=Msa0778580-mRNA-1
chr5_2 exon 59121383 59121467 59121383 ID=Msa0778580-mRNA-1:exon:17442;Parent=Msa0778580-mRNA-1
chr5_2 exon 59121579 59121647 59121579 ID=Msa0778580-mRNA-1:exon:17443;Parent=Msa0778580-mRNA-1
chr5_2 exon 59121738 59121841 59121738 ID=Msa0778580-mRNA-1:exon:17444;Parent=Msa0778580-mRNA-1
chr5_2 exon 59123121 59123462 59123121 ID=Msa0778580-mRNA-1:exon:17445;Parent=Msa0778580-mRNA-1
chr5_2 exon 59123500 59123679 59123500 ID=Msa0778580-mRNA-1:exon:17446;Parent=Msa0778580-mRNA-1
chr5_2 exon 59123710 59123826 59123710 ID=Msa0778580-mRNA-1:exon:17447;Parent=Msa0778580-mRNA-1
chr5_2 five_prime_UTR 59117056 59117102 59117056 ID=Msa0778580-mRNA-1:five_prime_utr;Parent=Msa0778580-mRNA-1
chr5_2 five_prime_UTR 59117949 59118009 59117949 ID=Msa0778580-mRNA-1:five_prime_utr;Parent=Msa0778580-mRNA-1
chr5_2 CDS 59118010 59118332 59118010 ID=Msa0778580-mRNA-1:cds;Parent=Msa0778580-mRNA-1
chr5_2 CDS 59118539 59118637 59118539 ID=Msa0778580-mRNA-1:cds;Parent=Msa0778580-mRNA-1
chr5_2 CDS 59119074 59119147 59119074 ID=Msa0778580-mRNA-1:cds;Parent=Msa0778580-mRNA-1
chr5_2 CDS 59119312 59119388 59119312 ID=Msa0778580-mRNA-1:cds;Parent=Msa0778580-mRNA-1
chr5_2 CDS 59119493 59119564 59119493 ID=Msa0778580-mRNA-1:cds;Parent=Msa0778580-mRNA-1
chr5_2 CDS 59120591 59120659 59120591 ID=Msa0778580-mRNA-1:cds;Parent=Msa0778580-mRNA-1
chr5_2 CDS 59120778 59120824 59120778 ID=Msa0778580-mRNA-1:cds;Parent=Msa0778580-mRNA-1
chr5_2 CDS 59121383 59121467 59121383 ID=Msa0778580-mRNA-1:cds;Parent=Msa0778580-mRNA-1
chr5_2 CDS 59121579 59121647 59121579 ID=Msa0778580-mRNA-1:cds;Parent=Msa0778580-mRNA-1
chr5_2 CDS 59121738 59121841 59121738 ID=Msa0778580-mRNA-1:cds;Parent=Msa0778580-mRNA-1
chr5_2 CDS 59123121 59123262 59123121 ID=Msa0778580-mRNA-1:cds;Parent=Msa0778580-mRNA-1
chr5_2 three_prime_UTR 59123263 59123462 59123263 ID=Msa0778580-mRNA-1:three_prime_utr;Parent=Msa0778580-mRNA-1
chr5_2 three_prime_UTR 59123500 59123679 59123500 ID=Msa0778580-mRNA-1:three_prime_utr;Parent=Msa0778580-mRNA-1
chr5_2 three_prime_UTR 59123710 59123826 59123710 ID=Msa0778580-mRNA-1:three_prime_utr;Parent=Msa0778580-mRNA-1
Gene Sequence

>Msa0778580

ATGGCACTTACGGCAAACAAAGTTTCAAGCGGTCCTATCTTGACTAATAGAGCAACACTTTGTAGATCACATGGATCTTCATCACCAAGGATAAACAGAATACAGTTTTCAAGGGTTAGACTCGAAAATGGACATTTGAACAACGATTCTGTTCTCAATGAGAGATCAACCTTATTCAATGACTGGTTTCGGTTCATCAATGGAAGAAATCCAGTTAGTTTAATCTCCAAGACATCTTCTGTCTCATGTAAATCAACAGGAGCAAATAATACTGAAGAAAAAGAATGTGTTACAACTTATGATGATGTTTCTGATTTGACTAGGAGACATGCCGAAGATGAGAAAAATGATCGTATTCGTTCTGTTCGTGGCTTGTCTGAAGCTTATAGATTTGCCTGTAACGATGCAAAGTTTCTCTCACGTGGCATAATGAGGATGGATGAGCGTGCGCGCCAAGATGTTGCCTTTTTAGGGACAGAATTTCTCAAACTTGATGCTCGGGCAAGAAAGGATACTGAGAAAATCGACCGTGGTGTCAAAGAAAAAGCTAAGCGCCTTAATCGTATTGCTACTATCTTGAAGGATATCGCTCAGACCAGATTGAAAAGTGCTGCCGATGAGCACTGGAGTGACGGGGCCTTAGAGGCTGATTTGCGCCTTGCCGACTTCCGTGCCAAGCAACGTGCCATGGAAGATGCCCTTATGTCCTTGGAGCTGATCAAAAACATCCATGACATGATGGTGAGCAAGACTTATAACTTAGGTCGAATCATGCTTGAAAAGAATGGAAGAACCACAAATTCCTTTCTTGGGGATGTGACGGCAGAACGGATTACTGCTCTTCAGGAAGCTTACTGGAGTATGGCATCTGCACTTTCTGAAGCAGATGGAATTGATTACACTGATCCTGAAGAGCTTGAATTGTTAATCACAACTCTTATAGACCTTGATGCAATGGACGGTAAACACAGTGTATCTTTGTTGGCAGAGTGTTCTAGTTCCCCTGATGTCGGTACCAGGCTGGCCGAGGATAGCAATCCAGCCATTGCAGCTGCAGCATCCAAAGCTATATATGAACTGAAAAAGCAATGGGAAATAGAAGAAGGGGATAGTTGGAGGTTTATGATGGATGAAAGCACCAAGGAAGAAAATGAAACCTGA

Protein sequence

>Msa0778580

MALTANKVSSGPILTNRATLCRSHGSSSPRINRIQFSRVRLENGHLNNDSVLNERSTLFNDWFRFINGRNPVSLISKTSSVSCKSTGANNTEEKECVTTYDDVSDLTRRHAEDEKNDRIRSVRGLSEAYRFACNDAKFLSRGIMRMDERARQDVAFLGTEFLKLDARARKDTEKIDRGVKEKAKRLNRIATILKDIAQTRLKSAADEHWSDGALEADLRLADFRAKQRAMEDALMSLELIKNIHDMMVSKTYNLGRIMLEKNGRTTNSFLGDVTAERITALQEAYWSMASALSEADGIDYTDPEELELLITTLIDLDAMDGKHSVSLLAECSSSPDVGTRLAEDSNPAIAAAASKAIYELKKQWEIEEGDSWRFMMDESTKEENET*