AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0887000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887000 MtrunA17_Chr6g0468521 94.402 393 8 1 1 379 89 481 0.0 739
Msa0887000 MtrunA17_Chr6g0468531 83.756 394 50 1 1 380 90 483 0.0 655
Msa0887000 MtrunA17_Chr6g0468511 81.491 389 58 1 1 375 89 477 0.0 606
Msa0887000 MtrunA17_Chr1g0202761 51.654 393 176 1 1 379 102 494 1.99e-144 419
Msa0887000 MtrunA17_Chr7g0248051 51.451 379 170 1 1 365 129 507 1.94e-129 381
Msa0887000 MtrunA17_Chr1g0154441 43.264 386 204 2 1 371 1 386 5.05e-110 327
Msa0887000 MtrunA17_Chr5g0412771 44.359 390 202 2 1 375 115 504 1.93e-107 325
Msa0887000 MtrunA17_Chr8g0368001 41.221 393 216 2 1 378 109 501 1.30e-106 323
Msa0887000 MtrunA17_Chr7g0254521 41.237 388 213 2 1 373 90 477 1.35e-104 317
Msa0887000 MtrunA17_Chr7g0254531 40.102 394 219 3 1 379 1 392 3.30e-98 297
Msa0887000 MtrunA17_Chr7g0254511 40.415 386 216 1 1 372 89 474 3.47e-98 300
Msa0887000 MtrunA17_Chr2g0288281 38.817 389 222 2 1 373 1 389 4.05e-95 289
Msa0887000 MtrunA17_Chr5g0412541 38.579 394 226 3 1 378 95 488 1.62e-94 291
Msa0887000 MtrunA17_Chr4g0024501 39.487 390 220 2 1 374 123 512 7.88e-94 290
Msa0887000 MtrunA17_Chr6g0460541 40.609 394 218 3 1 379 5 397 4.73e-93 285
Msa0887000 MtrunA17_Chr2g0322671 39.340 394 223 2 1 378 111 504 4.77e-93 288
Msa0887000 MtrunA17_Chr3g0132531 39.394 396 224 3 1 380 105 500 5.50e-92 285
Msa0887000 MtrunA17_Chr5g0412571 38.481 395 226 4 1 378 40 434 5.62e-87 270
Msa0887000 MtrunA17_Chr5g0442331 36.623 385 228 2 1 369 105 489 1.36e-81 258
Msa0887000 MtrunA17_Chr7g0254501 37.987 308 175 2 86 379 2 307 5.29e-69 219
Msa0887000 MtrunA17_Chr6g0483351 35.417 384 222 6 1 362 1 380 4.42e-65 213
Msa0887000 MtrunA17_Chr6g0483361 33.846 390 232 5 1 368 84 469 7.49e-65 214
Msa0887000 MtrunA17_Chr6g0477961 34.109 387 235 4 1 368 86 471 8.81e-63 208
Msa0887000 MtrunA17_Chr6g0483381 32.642 386 242 4 1 368 86 471 1.22e-59 200
Msa0887000 MtrunA17_Chr2g0317221 34.043 376 230 3 1 359 10 384 3.15e-58 194
Msa0887000 MtrunA17_Chr2g0317131 34.309 376 229 3 1 359 102 476 3.62e-58 196
Msa0887000 MtrunA17_Chr1g0208791 32.199 382 243 2 1 366 102 483 5.40e-58 196
Msa0887000 MtrunA17_Chr8g0392601 29.870 385 254 2 1 369 71 455 4.33e-55 188
Msa0887000 MtrunA17_Chr3g0132541 31.868 364 206 5 1 363 100 422 8.17e-55 186
Msa0887000 MtrunA17_Chr6g0483331 32.564 390 233 7 2 368 73 455 1.61e-54 186
Msa0887000 MtrunA17_Chr7g0251331 29.899 398 259 4 1 381 85 479 2.01e-54 186
Msa0887000 MtrunA17_Chr1g0208821 32.817 387 236 5 1 369 100 480 6.14e-53 182
Msa0887000 MtrunA17_Chr5g0440661 30.595 353 194 5 1 351 1 304 4.07e-52 176
Msa0887000 MtrunA17_Chr2g0317161 33.509 379 228 4 1 359 90 464 1.55e-51 179
Msa0887000 MtrunA17_Chr2g0317171 33.245 379 229 4 1 359 96 470 3.59e-51 178
Msa0887000 MtrunA17_Chr6g0483341 30.982 397 248 6 2 381 102 489 5.81e-51 177
Msa0887000 MtrunA17_Chr2g0317151 34.037 379 226 4 1 359 92 466 1.74e-50 176
Msa0887000 MtrunA17_Chr6g0449061 27.551 392 252 7 1 368 90 473 4.45e-49 172
Msa0887000 MtrunA17_Chr6g0483161 30.890 382 221 6 1 362 3 361 5.90e-49 169
Msa0887000 MtrunA17_Chr1g0208881 30.380 395 256 4 1 378 84 476 2.05e-46 165
Msa0887000 MtrunA17_Chr7g0251321 28.906 384 238 3 1 368 1 365 3.85e-45 159
Msa0887000 MtrunA17_Chr5g0397991 27.441 379 259 2 1 363 124 502 4.91e-44 160
Msa0887000 MtrunA17_Chr1g0208891 29.668 391 257 3 1 375 83 471 1.07e-42 155
Msa0887000 MtrunA17_Chr6g0467321 27.720 386 252 6 1 360 101 485 1.16e-40 150
Msa0887000 MtrunA17_Chr5g0428251 25.758 396 275 4 1 380 114 506 2.38e-40 150
Msa0887000 MtrunA17_Chr6g0473701 27.569 399 261 8 1 379 187 577 2.75e-39 147
Msa0887000 MtrunA17_Chr6g0460521 37.327 217 122 1 176 378 1 217 2.82e-39 139
Msa0887000 MtrunA17_Chr1g0203791 26.396 394 274 4 1 378 123 516 8.21e-39 145
Msa0887000 MtrunA17_Chr6g0460531 40.678 177 105 0 1 177 84 260 4.72e-37 135
Msa0887000 MtrunA17_Chr3g0140931 25.758 396 256 7 1 369 110 494 1.37e-36 139
Msa0887000 MtrunA17_Chr8g0364751 43.275 171 83 1 213 369 6 176 2.40e-36 130
Msa0887000 MtrunA17_Chr8g0364761 35.047 214 136 2 1 211 112 325 8.74e-35 130
Msa0887000 MtrunA17_Chr8g0389801 26.302 384 255 9 1 363 82 458 4.63e-30 120
Msa0887000 MtrunA17_Chr4g0013031 23.500 400 281 8 1 380 125 519 3.35e-27 112
Msa0887000 MtrunA17_Chr2g0295631 24.557 395 260 7 1 360 79 470 1.09e-25 108
Msa0887000 MtrunA17_Chr6g0483264 29.902 204 129 1 179 368 1 204 4.08e-24 99.4
Msa0887000 MtrunA17_Chr6g0487091 25.401 374 236 12 26 363 21 387 2.32e-21 94.7
Msa0887000 MtrunA17_Chr6g0483241 34.426 183 110 4 1 177 3 181 4.66e-19 84.0
Msa0887000 MtrunA17_Chr5g0442311 29.050 179 125 1 1 177 1 179 9.18e-19 83.2
Msa0887000 MtrunA17_Chr5g0398571 27.600 250 160 3 145 380 55 297 2.47e-17 82.0
Msa0887000 MtrunA17_Chr6g0483221 30.667 150 90 4 226 361 6 155 8.17e-13 66.2
Msa0887000 MtrunA17_Chr6g0483261 26.752 157 101 1 226 368 6 162 1.01e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887000 AT4G00350.1 50.761 394 178 2 1 378 146 539 1.58e-144 421
Msa0887000 AT4G25640.1 53.165 395 170 2 1 380 92 486 4.68e-138 402
Msa0887000 AT4G25640.2 53.165 395 170 2 1 380 92 486 2.11e-137 402
Msa0887000 AT4G25640.3 53.779 344 145 1 1 330 92 435 2.22e-122 362
Msa0887000 AT1G47530.2 45.078 386 197 2 1 371 1 386 2.74e-117 346
Msa0887000 AT1G47530.1 45.078 386 197 2 1 371 93 478 4.00e-116 347
Msa0887000 AT3G26590.2 43.411 387 202 4 1 371 1 386 6.79e-108 322
Msa0887000 AT3G26590.1 43.411 387 202 4 1 371 103 488 1.06e-106 323
Msa0887000 AT5G38030.1 41.451 386 211 2 1 371 103 488 1.08e-105 320
Msa0887000 AT1G23300.1 41.371 394 216 2 1 379 102 495 1.91e-105 320
Msa0887000 AT1G12950.1 40.863 394 218 2 1 379 125 518 1.24e-104 318
Msa0887000 AT1G61890.1 38.265 392 224 4 1 375 105 495 1.67e-99 304
Msa0887000 AT1G11670.1 38.776 392 222 4 1 375 108 498 1.33e-98 302
Msa0887000 AT1G61890.2 38.786 379 214 4 1 362 105 482 1.23e-94 291
Msa0887000 AT3G21690.1 38.931 393 224 2 1 377 110 502 2.92e-93 288
Msa0887000 AT4G21903.3 37.852 391 227 2 1 375 1 391 2.90e-91 280
Msa0887000 AT1G33110.1 41.192 386 212 2 1 371 94 479 1.10e-90 281
Msa0887000 AT4G21910.3 37.852 391 227 2 1 375 112 502 7.06e-90 280
Msa0887000 AT4G21910.1 37.852 391 227 2 1 375 112 502 7.06e-90 280
Msa0887000 AT4G21910.2 37.596 391 228 2 1 375 114 504 7.06e-90 280
Msa0887000 AT4G21910.4 37.596 391 228 2 1 375 114 504 7.06e-90 280
Msa0887000 AT4G21903.1 37.852 391 227 2 1 375 110 500 1.03e-89 279
Msa0887000 AT5G65380.1 39.231 390 221 3 1 374 95 484 1.38e-89 278
Msa0887000 AT1G33100.1 40.415 386 215 2 1 371 91 476 4.00e-89 277
Msa0887000 AT1G33080.1 40.674 386 214 2 1 371 94 479 6.19e-89 277
Msa0887000 AT3G59030.1 38.182 385 222 2 1 369 109 493 8.31e-88 275
Msa0887000 AT1G33080.2 41.223 376 206 2 1 361 94 469 1.20e-86 271
Msa0887000 AT5G44050.1 37.563 394 230 3 1 378 98 491 2.07e-85 268
Msa0887000 AT4G21903.2 37.436 390 228 2 1 374 110 499 3.54e-85 268
Msa0887000 AT3G03620.2 37.310 394 232 2 1 379 95 488 1.22e-84 266
Msa0887000 AT3G03620.1 37.310 394 232 2 1 379 95 488 1.22e-84 266
Msa0887000 AT1G33090.1 37.824 386 225 2 1 371 94 479 4.52e-84 265
Msa0887000 AT1G61890.3 39.080 348 194 4 1 331 105 451 1.22e-83 263
Msa0887000 AT5G17700.2 36.761 389 231 2 1 374 92 480 1.75e-80 255
Msa0887000 AT5G17700.1 36.761 389 231 2 1 374 92 480 1.75e-80 255
Msa0887000 AT5G10420.1 38.501 387 222 3 1 371 96 482 1.90e-76 244
Msa0887000 AT1G33110.2 41.216 296 173 1 1 295 94 389 1.63e-65 214
Msa0887000 AT2G04040.1 31.496 381 245 2 4 368 88 468 9.16e-60 201
Msa0887000 AT2G04070.1 30.709 381 248 2 4 368 88 468 4.89e-59 199
Msa0887000 AT2G04080.1 30.709 381 248 2 4 368 88 468 2.56e-58 197
Msa0887000 AT5G52450.1 33.249 394 239 4 2 375 85 474 8.63e-58 196
Msa0887000 AT3G59030.2 35.354 297 190 1 1 295 109 405 1.92e-57 193
Msa0887000 AT2G04080.2 30.933 375 243 2 4 362 88 462 1.00e-56 192
Msa0887000 AT2G34360.1 32.242 397 237 9 2 378 86 470 6.96e-56 191
Msa0887000 AT2G04050.1 30.867 392 254 3 1 376 85 475 1.87e-55 189
Msa0887000 AT1G15170.1 31.865 386 247 2 1 370 92 477 1.65e-54 187
Msa0887000 AT1G73700.1 32.832 399 242 6 2 380 83 475 3.20e-54 186
Msa0887000 AT5G17700.3 35.473 296 190 1 1 295 92 387 3.43e-54 184
Msa0887000 AT1G66760.2 29.648 398 255 5 1 376 86 480 7.62e-52 180
Msa0887000 AT1G66760.1 30.990 384 243 4 1 365 86 466 1.21e-51 179
Msa0887000 AT1G15150.1 29.471 397 260 4 1 379 89 483 1.25e-50 177
Msa0887000 AT3G23550.1 30.628 382 245 3 1 364 89 468 1.42e-50 176
Msa0887000 AT2G04100.1 28.900 391 260 3 1 374 88 477 2.01e-50 176
Msa0887000 AT1G71140.1 29.639 388 249 4 1 368 84 467 3.69e-50 176
Msa0887000 AT3G23560.1 30.667 375 244 2 1 359 97 471 1.08e-49 174
Msa0887000 AT1G15160.1 29.219 397 261 4 1 379 89 483 1.90e-49 174
Msa0887000 AT1G66780.1 28.499 393 247 5 1 368 93 476 3.11e-49 173
Msa0887000 AT2G04090.1 29.319 382 252 3 4 368 91 471 3.81e-49 172
Msa0887000 AT2G04100.2 29.551 379 249 3 1 362 88 465 4.54e-49 172
Msa0887000 AT1G15170.2 31.006 358 228 3 32 370 1 358 6.95e-49 169
Msa0887000 AT1G15180.1 30.570 386 252 2 1 370 93 478 9.49e-48 169
Msa0887000 AT1G15150.2 29.155 343 227 2 53 379 25 367 2.12e-45 160
Msa0887000 AT1G66760.3 29.586 338 222 2 44 365 1 338 5.52e-43 153
Msa0887000 AT2G34360.2 28.283 396 212 7 2 378 86 428 7.47e-43 155
Msa0887000 AT1G64820.1 27.720 386 253 7 4 368 90 470 3.06e-42 154
Msa0887000 AT4G29140.1 25.750 400 270 7 1 380 114 506 1.08e-34 134
Msa0887000 AT2G38510.1 23.367 398 288 4 1 381 64 461 2.75e-33 130
Msa0887000 AT1G71870.1 24.096 415 276 7 1 379 82 493 1.38e-32 128
Msa0887000 AT3G23560.2 28.956 297 209 1 1 295 97 393 5.66e-32 125
Msa0887000 AT1G58340.1 23.896 385 271 5 1 366 116 497 3.04e-31 124
Msa0887000 AT5G19700.1 25.594 379 260 5 8 369 101 474 6.58e-31 123
Msa0887000 AT4G23030.1 27.320 388 258 6 1 368 91 474 4.69e-30 121
Msa0887000 AT1G66760.4 28.667 300 206 3 1 295 86 382 6.87e-29 116
Msa0887000 AT5G52050.1 22.078 385 278 4 1 363 93 477 1.59e-26 110
Msa0887000 AT1G15180.2 28.340 247 175 1 49 293 21 267 1.42e-25 107
Msa0887000 AT4G22790.1 25.000 412 261 11 1 381 88 482 5.77e-22 97.8
Msa0887000 AT5G49130.1 23.038 395 264 7 1 360 84 473 1.08e-20 94.0
Msa0887000 AT2G04066.1 28.571 133 81 1 250 368 31 163 2.99e-18 82.0

Find 118 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATCATCAAAACTCTTTA+AGG 0.072888 6_1:-47753053 Msa0887000:five_prime_UTR
GATTGTCTTGGATGGCATTT+AGG 0.156838 6_1:-47752306 Msa0887000:CDS
CTCTTGGTTCCTATTCAATT+TGG 0.201001 6_1:-47752168 Msa0887000:intron
TTTGTGCTTGAAGAAATTTC+TGG 0.209530 6_1:+47752518 None:intergenic
GGATGGCATTTAGGGAATTA+TGG 0.215114 6_1:-47752297 Msa0887000:CDS
AGGTATTAAAATTTGTAAAT+TGG 0.215508 6_1:+47753077 None:intergenic
GGTCAGCTATTTCTTGTTCT+TGG 0.215985 6_1:+47752605 None:intergenic
CTTGGATTCAACCAGCATTT+GGG 0.216599 6_1:-47750422 Msa0887000:CDS
ACTCCAATCTTAAAATTTCT+TGG 0.219319 6_1:-47752628 Msa0887000:CDS
CCTTGGATTCAACCAGCATT+TGG 0.237599 6_1:-47750423 Msa0887000:CDS
TATATGTGTTATAGGGTCTT+TGG 0.241947 6_1:-47749707 Msa0887000:intron
CAGCTAATCGCATGAGAATT+TGG 0.242442 6_1:-47748414 Msa0887000:CDS
GGAGTTTACTAAGCTAAGTT+TGG 0.279769 6_1:-47752275 Msa0887000:CDS
GGAGTTGCATATATATTAAT+AGG 0.281683 6_1:+47752646 None:intergenic
ATTCTCTTCAGTGTCAATTT+AGG 0.289407 6_1:-47752866 Msa0887000:five_prime_UTR
TGGAACGCCATGCTGCTTCT+TGG 0.289808 6_1:-47751810 Msa0887000:CDS
AGCATCTAAGTACTCTTTCT+TGG 0.308166 6_1:-47751201 Msa0887000:CDS
ATATGTGTTATAGGGTCTTT+GGG 0.308925 6_1:-47749706 Msa0887000:intron
GAAAATAACAGTCATGAAAA+TGG 0.309892 6_1:+47751148 None:intergenic
GTATTTGATTGGGGAATAAC+TGG 0.310617 6_1:-47752418 Msa0887000:CDS
TATATTGTTGGACTCCCTAT+TGG 0.314378 6_1:-47750452 Msa0887000:CDS
AGACTATATGAGAACTTTGT+TGG 0.319154 6_1:+47753007 None:intergenic
CTTCATCAGTGTATTTGATT+GGG 0.333826 6_1:-47752428 Msa0887000:CDS
CGTTCCAACCCTGAATATTA+AGG 0.335206 6_1:+47751826 None:intergenic
TCTTCATCAGTGTATTTGAT+TGG 0.340775 6_1:-47752429 Msa0887000:CDS
GATGGCATTTAGGGAATTAT+GGG 0.345335 6_1:-47752296 Msa0887000:CDS
GTCTCATTTAAACTCTATAA+TGG 0.347841 6_1:-47748208 Msa0887000:three_prime_UTR
ATTGTCTTGGATGGCATTTA+GGG 0.356470 6_1:-47752305 Msa0887000:CDS
AGTGAATTAGCATACCTTCT+TGG 0.371972 6_1:-47751065 Msa0887000:intron
TTGGCATGTTATTATATTGT+TGG 0.373715 6_1:-47750464 Msa0887000:CDS
ACAATCATTATCCTTCTTGC+TGG 0.378972 6_1:-47752214 Msa0887000:CDS
TTATTCTTACCAAATTGAAT+AGG 0.392292 6_1:+47752159 None:intergenic
CTCTTCAGTGTCAATTTAGG+TGG 0.399737 6_1:-47752863 Msa0887000:five_prime_UTR
GTGATATTGCTAATACAAAA+TGG 0.399962 6_1:-47752463 Msa0887000:CDS
GATAATCCTGTGATTGCTCT+TGG 0.400996 6_1:-47752184 Msa0887000:CDS
AATCCAAGGAAAATTCCAAT+AGG 0.410570 6_1:+47750437 None:intergenic
TCACATGTAATATTGCAGTT+TGG 0.410870 6_1:-47752790 Msa0887000:five_prime_UTR
ATGGTGAGTTCGTTTGTTAT+AGG 0.414825 6_1:-47748189 Msa0887000:three_prime_UTR
GTTGAACATAATTACCTCAT+TGG 0.418352 6_1:+47749614 None:intergenic
AGTAGTACTGACTTGGGATC+TGG 0.419298 6_1:-47752919 Msa0887000:five_prime_UTR
GAGTTTACTAAGCTAAGTTT+GGG 0.429173 6_1:-47752274 Msa0887000:CDS
GAATATTTAGGTGTGGTCAT+TGG 0.431076 6_1:-47750521 Msa0887000:intron
GCTCAACTAATTTATGCCAT+TGG 0.431774 6_1:-47752352 Msa0887000:CDS
ACACTGTGTGGCCAAGCTTA+TGG 0.439411 6_1:-47752748 Msa0887000:CDS
GAGCTCTAACAAAGTTCAAA+AGG 0.446490 6_1:-47748392 Msa0887000:CDS
AAAGAGTACTTAGATGCTCT+TGG 0.448789 6_1:+47751206 None:intergenic
TCATTATATATAAGACCAAC+TGG 0.457291 6_1:-47749638 Msa0887000:CDS
TAATATTTGTTCAAGTGTAC+AGG 0.476744 6_1:+47753106 None:intergenic
ATGTCTCAGTCTCTTCTCAT+TGG 0.479393 6_1:-47751173 Msa0887000:CDS
GAATTGCATATTTGCCAGCT+AGG 0.479678 6_1:+47752584 None:intergenic
AACTAATTTATGCCATTGGT+TGG 0.481314 6_1:-47752348 Msa0887000:CDS
TTAGGTGTGGTCATTGGATG+TGG 0.484725 6_1:-47750515 Msa0887000:intron
ATCACTGTTGGTAAAGATGA+AGG 0.485049 6_1:+47751106 None:intergenic
ATCCAAGGAAAATTCCAATA+GGG 0.490049 6_1:+47750438 None:intergenic
CCAAATGCTGGTTGAATCCA+AGG 0.490422 6_1:+47750423 None:intergenic
TGTGGCCAAGCTTATGGTGC+AGG 0.490831 6_1:-47752742 Msa0887000:CDS
ATAGCAATGGAAAACATGTA+TGG 0.491976 6_1:+47752553 None:intergenic
TATGGTTGGTTACATAAACT+TGG 0.494914 6_1:-47750483 Msa0887000:CDS
GGAATCATATCATATATTAG+AGG 0.498472 6_1:-47748268 Msa0887000:three_prime_UTR
CTGGAGCTTGCTCCTCCTCA+AGG 0.507782 6_1:-47752900 Msa0887000:five_prime_UTR
TATCACAGGATGGGGATTTG+CGG 0.509898 6_1:-47752377 Msa0887000:CDS
TGGATGTGGATGGCAAGTTA+TGG 0.516739 6_1:-47750501 Msa0887000:CDS
GCCATTGGTTGGTGTAAAGA+AGG 0.520332 6_1:-47752337 Msa0887000:CDS
GGCAAGTAATATCACAGGAT+GGG 0.520521 6_1:-47752386 Msa0887000:CDS
GAGTTTAAATGAGACAAGGA+AGG 0.521782 6_1:+47748216 None:intergenic
AAGGATGGAATGGATTGTCT+TGG 0.523770 6_1:-47752318 Msa0887000:CDS
CAAGAAATAGCTGACCTAGC+TGG 0.524085 6_1:-47752598 Msa0887000:CDS
GCAGGGCAATTTCAAAATGC+TGG 0.525936 6_1:-47752724 Msa0887000:CDS
TTGGATTCAACCAGCATTTG+GGG 0.530104 6_1:-47750421 Msa0887000:CDS
TTCATCAGTGTATTTGATTG+GGG 0.536727 6_1:-47752427 Msa0887000:CDS
GGGAATAACTGGCTTAGCTA+TGG 0.539376 6_1:-47752407 Msa0887000:CDS
ATTGCCCTGCACCATAAGCT+TGG 0.540907 6_1:+47752737 None:intergenic
ATCTAAGTACTCTTTCTTGG+TGG 0.541032 6_1:-47751198 Msa0887000:CDS
TTGGTCTAGTAGTACTGACT+TGG 0.544219 6_1:-47752926 Msa0887000:five_prime_UTR
TTGGCCACACAGTGTTGCTA+TGG 0.555323 6_1:+47752756 None:intergenic
CTTTGGGGAGGCACAATGTG+CGG 0.557252 6_1:-47749690 Msa0887000:CDS
AATTACCTCATTGGTCCAGT+TGG 0.558399 6_1:+47749623 None:intergenic
GCAAGTAATATCACAGGATG+GGG 0.558420 6_1:-47752385 Msa0887000:CDS
GTTGTATAACCCACTTGAGT+TGG 0.561536 6_1:-47752945 Msa0887000:five_prime_UTR
TCTTCAGTGTCAATTTAGGT+GGG 0.562622 6_1:-47752862 Msa0887000:five_prime_UTR
GAGCAATCACAGGATTATCA+AGG 0.563737 6_1:+47752188 None:intergenic
TTAGCCTTAATATTCAGGGT+TGG 0.565916 6_1:-47751830 Msa0887000:intron
TGGCAAGTAATATCACAGGA+TGG 0.567971 6_1:-47752387 Msa0887000:CDS
TGGTGTAAAGAAGGATGGAA+TGG 0.573821 6_1:-47752328 Msa0887000:CDS
GTTCGTGTCTCTAATACACT+TGG 0.574446 6_1:-47751239 Msa0887000:CDS
GCTTGAAGAAATTTCTGGAT+GGG 0.575290 6_1:+47752523 None:intergenic
TACTACTAGACCAACTCAAG+TGG 0.575804 6_1:+47752935 None:intergenic
TTGGTTGGTGTAAAGAAGGA+TGG 0.577321 6_1:-47752333 Msa0887000:CDS
GATGGGTAAATTGATAGCAA+TGG 0.579375 6_1:+47752540 None:intergenic
TGTGGATGGCAAGTTATGGT+TGG 0.586186 6_1:-47750497 Msa0887000:CDS
ATGTATCAAATCATCACTGT+TGG 0.591841 6_1:+47751094 None:intergenic
TTGGACTAAGTACAGCACTA+AGG 0.594052 6_1:-47751791 Msa0887000:intron
TGCTTGAAGAAATTTCTGGA+TGG 0.599379 6_1:+47752522 None:intergenic
GCTATGGCAAGTAATATCAC+AGG 0.600144 6_1:-47752391 Msa0887000:CDS
AGTTTAAATGAGACAAGGAA+GGG 0.601630 6_1:+47748217 None:intergenic
GTGTTATAGGGTCTTTGGGG+AGG 0.610493 6_1:-47749702 Msa0887000:intron
TGGTCTAGTAGTACTGACTT+GGG 0.612766 6_1:-47752925 Msa0887000:five_prime_UTR
TAGGAACCAAGAGCAATCAC+AGG 0.614787 6_1:+47752178 None:intergenic
CATATATATTAATAGGCAAG+AGG 0.615645 6_1:+47752653 None:intergenic
TCCTTCTTTACACCAACCAA+TGG 0.619153 6_1:+47752336 None:intergenic
ATGGAATGGATTGTCTTGGA+TGG 0.624219 6_1:-47752314 Msa0887000:CDS
TAATGATCTGTTTAGAACAG+TGG 0.630951 6_1:-47752243 Msa0887000:CDS
GTGTGGTCATTGGATGTGGA+TGG 0.631345 6_1:-47750511 Msa0887000:CDS
TAACCATGGTGATACCAAGA+AGG 0.635742 6_1:+47751051 None:intergenic
TATCAAGGTAGCCAGCAAGA+AGG 0.638994 6_1:+47752203 None:intergenic
GAATCGAACATGAGACCTTG+AGG 0.641231 6_1:+47752885 None:intergenic
TGGATTCAACCAGCATTTGG+GGG 0.650440 6_1:-47750420 Msa0887000:CDS
ACTTAGTCCAAGAAGCAGCA+TGG 0.659129 6_1:+47751803 None:intergenic
AGGCAAGAGGAGTATACAAG+TGG 0.663213 6_1:+47752666 None:intergenic
TATAGAGTTTAAATGAGACA+AGG 0.665716 6_1:+47748212 None:intergenic
ACTACTAGACCAACTCAAGT+GGG 0.665825 6_1:+47752936 None:intergenic
GTGGCCAAGCTTATGGTGCA+GGG 0.676034 6_1:-47752741 Msa0887000:CDS
ACATCACTTGAAATGTCGCG+TGG 0.682897 6_1:-47748369 Msa0887000:exon
TATGTGTTATAGGGTCTTTG+GGG 0.687736 6_1:-47749705 Msa0887000:intron
TCGAACATGAGACCTTGAGG+AGG 0.688363 6_1:+47752888 None:intergenic
TAAGACCAACTGGACCAATG+AGG 0.702108 6_1:-47749628 Msa0887000:intron
ACTGCCATAGCAACACTGTG+TGG 0.716579 6_1:-47752760 Msa0887000:CDS
TCTTATATATAATGACTACG+AGG 0.774363 6_1:+47749646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATAAACAAATGTTAT+TGG + chr6_1:47748329-47748348 None:intergenic 10.0%
!! TACTAATTAAATAAATATCT+AGG + chr6_1:47749588-47749607 None:intergenic 10.0%
!! AGTTATTATACTTTAAATAA+CGG + chr6_1:47750752-47750771 None:intergenic 10.0%
!!! TAACTTTTATAAGAATATTT+AGG - chr6_1:47750767-47750786 Msa0887000:intron 10.0%
!! AGGTATTAAAATTTGTAAAT+TGG + chr6_1:47748226-47748245 None:intergenic 15.0%
!! ACATTAATTTCAAAATATCT+TGG - chr6_1:47749411-47749430 Msa0887000:intron 15.0%
!!! TCTTGAAATCATTTTTAAAT+AGG + chr6_1:47749718-47749737 None:intergenic 15.0%
!!! GTTTTTAAAATTGAACATTT+TGG - chr6_1:47750385-47750404 Msa0887000:intron 15.0%
!!! TTTTACATCTATTACAATTT+TGG - chr6_1:47750417-47750436 Msa0887000:CDS 15.0%
!!! TAAACAACTTTAATGATTTT+GGG + chr6_1:47750944-47750963 None:intergenic 15.0%
!!! ATAAACAACTTTAATGATTT+TGG + chr6_1:47750945-47750964 None:intergenic 15.0%
!!! TTAATATGATATTTTGATTC+GGG + chr6_1:47751157-47751176 None:intergenic 15.0%
!!! CTTAATATGATATTTTGATT+CGG + chr6_1:47751158-47751177 None:intergenic 15.0%
!! TGATTAAACTAAAAGATATT+TGG + chr6_1:47751365-47751384 None:intergenic 15.0%
!! TATATGTAAATTTGTAAGAA+AGG + chr6_1:47751577-47751596 None:intergenic 15.0%
!! AATTTACATATATGTGTTAT+AGG - chr6_1:47751585-47751604 Msa0887000:intron 15.0%
!! ATTTACATATATGTGTTATA+GGG - chr6_1:47751586-47751605 Msa0887000:intron 15.0%
!! TAATAAATCATATAATCAAG+TGG - chr6_1:47751852-47751871 Msa0887000:intron 15.0%
!!! AATTATTTTGAGAAATAAAG+AGG - chr6_1:47751941-47751960 Msa0887000:intron 15.0%
!! AAGTAAAAAATAATTAACGA+TGG - chr6_1:47752201-47752220 Msa0887000:CDS 15.0%
!!! TAGCAACAAATAATTTTTTT+TGG + chr6_1:47752820-47752839 None:intergenic 15.0%
!!! AAATTTTCAGTTTTTTCTAA+TGG - chr6_1:47753011-47753030 Msa0887000:five_prime_UTR 15.0%
!! TTATTCTTACCAAATTGAAT+AGG + chr6_1:47749144-47749163 None:intergenic 20.0%
!! TTCAAAATATCTTGGTTTAT+TGG - chr6_1:47749419-47749438 Msa0887000:intron 20.0%
!!! TATTTTTAGCCTTAATATTC+AGG - chr6_1:47749465-47749484 Msa0887000:intron 20.0%
!!! ATTTTTAGCCTTAATATTCA+GGG - chr6_1:47749466-47749485 Msa0887000:intron 20.0%
!!! AGTGCTATTTTAGTTAAATT+TGG + chr6_1:47749796-47749815 None:intergenic 20.0%
!!! CTATTTTACAACTGTTATTA+AGG - chr6_1:47749820-47749839 Msa0887000:intron 20.0%
!! ATCATCAATCAATAATTAGT+TGG + chr6_1:47750019-47750038 None:intergenic 20.0%
!!! TTTTGTCATAATTTCACTTT+TGG - chr6_1:47750329-47750348 Msa0887000:intron 20.0%
!! GTAATAGATGTAAAAATTGA+GGG + chr6_1:47750412-47750431 None:intergenic 20.0%
!! TGTAATAGATGTAAAAATTG+AGG + chr6_1:47750413-47750432 None:intergenic 20.0%
!! TTTCTGCTAAGATTTAAATT+CGG - chr6_1:47750500-47750519 Msa0887000:CDS 20.0%
!! TTTATAAGAATATTTAGGTG+TGG - chr6_1:47750772-47750791 Msa0887000:intron 20.0%
!!! TTTTACAAAACTGATCTTTA+AGG - chr6_1:47751201-47751220 Msa0887000:CDS 20.0%
!!! AAGTTTTAACCAACATATTT+AGG + chr6_1:47751410-47751429 None:intergenic 20.0%
!! TTTAAAAATTGAACATGTAG+TGG + chr6_1:47751998-47752017 None:intergenic 20.0%
!!! CTACATGTTCAATTTTTAAA+CGG - chr6_1:47751998-47752017 Msa0887000:intron 20.0%
!! CAAATGGAAAAAGTTATAAA+TGG + chr6_1:47752161-47752180 None:intergenic 20.0%
!!! CATTTATAACTTTTTCCATT+TGG - chr6_1:47752159-47752178 Msa0887000:intron 20.0%
!! TAAAAAATAATTAACGATGG+TGG - chr6_1:47752204-47752223 Msa0887000:CDS 20.0%
!! AAAAAATAATTAACGATGGT+GGG - chr6_1:47752205-47752224 Msa0887000:CDS 20.0%
!!! TAGTCAAAAGCATAAAATTT+TGG - chr6_1:47752348-47752367 Msa0887000:CDS 20.0%
!! AAAATAGCAACAAATACTTT+AGG + chr6_1:47752794-47752813 None:intergenic 20.0%
!!! TTGTTATAGGTTTTTTTTAG+AGG - chr6_1:47753124-47753143 Msa0887000:five_prime_UTR 20.0%
!!! ATGATGTAACTTTTTAACTG+TGG - chr6_1:47748170-47748189 Msa0887000:three_prime_UTR 25.0%
! TAATATTTGTTCAAGTGTAC+AGG + chr6_1:47748197-47748216 None:intergenic 25.0%
!!! AAAGAGTTTTGATGATAACA+AGG + chr6_1:47748246-47748265 None:intergenic 25.0%
! GTTATCATCAAAACTCTTTA+AGG - chr6_1:47748247-47748266 Msa0887000:three_prime_UTR 25.0%
! CATATATATTAATAGGCAAG+AGG + chr6_1:47748650-47748669 None:intergenic 25.0%
! GGAGTTGCATATATATTAAT+AGG + chr6_1:47748657-47748676 None:intergenic 25.0%
! ACTCCAATCTTAAAATTTCT+TGG - chr6_1:47748672-47748691 Msa0887000:intron 25.0%
! GTGATATTGCTAATACAAAA+TGG - chr6_1:47748837-47748856 Msa0887000:intron 25.0%
!! AACTAACAAGAGTATATCAA+TGG + chr6_1:47749207-47749226 None:intergenic 25.0%
! CTAAACGTATATATTAGAGT+AGG - chr6_1:47749546-47749565 Msa0887000:intron 25.0%
! GATTATAATGTGTCAACTTA+GGG + chr6_1:47749889-47749908 None:intergenic 25.0%
! TGATTATAATGTGTCAACTT+AGG + chr6_1:47749890-47749909 None:intergenic 25.0%
! AGTTGACACATTATAATCAT+AGG - chr6_1:47749891-47749910 Msa0887000:intron 25.0%
!!! GGAGTATTGAGAAAAATATA+TGG + chr6_1:47749998-47750017 None:intergenic 25.0%
! GAAAATAACAGTCATGAAAA+TGG + chr6_1:47750155-47750174 None:intergenic 25.0%
! ATCTTAGCAGAAATACTTAT+GGG + chr6_1:47750493-47750512 None:intergenic 25.0%
! AATCTTAGCAGAAATACTTA+TGG + chr6_1:47750494-47750513 None:intergenic 25.0%
! TTCTGCTAAGATTTAAATTC+GGG - chr6_1:47750501-47750520 Msa0887000:CDS 25.0%
! TTTAACCATCAAAAGAAAAG+GGG + chr6_1:47750559-47750578 None:intergenic 25.0%
! CTTTAACCATCAAAAGAAAA+GGG + chr6_1:47750560-47750579 None:intergenic 25.0%
! AATGTTATGCATCAAAGTTA+TGG + chr6_1:47750596-47750615 None:intergenic 25.0%
!! ATAACATTACTTTGAAGGAT+TGG - chr6_1:47750608-47750627 Msa0887000:intron 25.0%
!! AAAGGTTTAGTAGCAATTTT+TGG + chr6_1:47750681-47750700 None:intergenic 25.0%
! TTGGCATGTTATTATATTGT+TGG - chr6_1:47750836-47750855 Msa0887000:intron 25.0%
!! TCTTTTACGTCTTACAAAAT+TGG - chr6_1:47750992-47751011 Msa0887000:intron 25.0%
!!! TCAGTTTTGTAAAAATGAGT+TGG + chr6_1:47751195-47751214 None:intergenic 25.0%
!!! TACTCACCGTTTTTTTTAAA+GGG + chr6_1:47751240-47751259 None:intergenic 25.0%
!!! TTACTCACCGTTTTTTTTAA+AGG + chr6_1:47751241-47751260 None:intergenic 25.0%
!!! TAAACAGAAGCACTTTTTTT+GGG + chr6_1:47751465-47751484 None:intergenic 25.0%
! TCTTATATATAATGACTACG+AGG + chr6_1:47751657-47751676 None:intergenic 25.0%
! TCATTATATATAAGACCAAC+TGG - chr6_1:47751662-47751681 Msa0887000:intron 25.0%
! AAAGAATTCTTTGCAAAACT+TGG + chr6_1:47751722-47751741 None:intergenic 25.0%
!! TTGTTTTCTGATTATTCTCT+CGG - chr6_1:47751740-47751759 Msa0887000:intron 25.0%
!! CACAACTACACATTTAAAAT+GGG + chr6_1:47752076-47752095 None:intergenic 25.0%
!! CATTTTAAATGTGTAGTTGT+GGG - chr6_1:47752075-47752094 Msa0887000:intron 25.0%
!! ATTTTAAATGTGTAGTTGTG+GGG - chr6_1:47752076-47752095 Msa0887000:intron 25.0%
!!! TAAAATTTTGGTTCTAATCC+CGG - chr6_1:47752360-47752379 Msa0887000:CDS 25.0%
! ATCAATTGACAAATATTACC+GGG + chr6_1:47752381-47752400 None:intergenic 25.0%
! CATCAATTGACAAATATTAC+CGG + chr6_1:47752382-47752401 None:intergenic 25.0%
! TGCTTATACTCTTTATACTA+GGG - chr6_1:47752510-47752529 Msa0887000:CDS 25.0%
! AGTTCTTGAGTCATTAATTT+GGG + chr6_1:47752538-47752557 None:intergenic 25.0%
!!! AGTTTTAATCCATGAAATGT+AGG + chr6_1:47752673-47752692 None:intergenic 25.0%
! TTATATGGAATATAAACTGC+AGG - chr6_1:47752854-47752873 Msa0887000:five_prime_UTR 25.0%
!!! TTTTAAGTCCGTAATAGAAA+AGG + chr6_1:47752962-47752981 None:intergenic 25.0%
! GGAATCATATCATATATTAG+AGG - chr6_1:47753032-47753051 Msa0887000:five_prime_UTR 25.0%
! TATAGAGTTTAAATGAGACA+AGG + chr6_1:47753091-47753110 None:intergenic 25.0%
! GTCTCATTTAAACTCTATAA+TGG - chr6_1:47753092-47753111 Msa0887000:five_prime_UTR 25.0%
AGACTATATGAGAACTTTGT+TGG + chr6_1:47748296-47748315 None:intergenic 30.0%
ATTCTCTTCAGTGTCAATTT+AGG - chr6_1:47748434-47748453 Msa0887000:intron 30.0%
TCACATGTAATATTGCAGTT+TGG - chr6_1:47748510-47748529 Msa0887000:intron 30.0%
!!! TGGCCAAGAAATTTTAAGAT+TGG + chr6_1:47748678-47748697 None:intergenic 30.0%
ATAGCAATGGAAAACATGTA+TGG + chr6_1:47748750-47748769 None:intergenic 30.0%
TTTGTGCTTGAAGAAATTTC+TGG + chr6_1:47748785-47748804 None:intergenic 30.0%
TCTTCATCAGTGTATTTGAT+TGG - chr6_1:47748871-47748890 Msa0887000:intron 30.0%
CTTCATCAGTGTATTTGATT+GGG - chr6_1:47748872-47748891 Msa0887000:intron 30.0%
TTCATCAGTGTATTTGATTG+GGG - chr6_1:47748873-47748892 Msa0887000:intron 30.0%
AACTAATTTATGCCATTGGT+TGG - chr6_1:47748952-47748971 Msa0887000:intron 30.0%
GAGTTTACTAAGCTAAGTTT+GGG - chr6_1:47749026-47749045 Msa0887000:intron 30.0%
! TAATGATCTGTTTAGAACAG+TGG - chr6_1:47749057-47749076 Msa0887000:intron 30.0%
ATGTATCAAATCATCACTGT+TGG + chr6_1:47750209-47750228 None:intergenic 30.0%
AGTGTTTCACAAACTATTAC+AGG - chr6_1:47750277-47750296 Msa0887000:intron 30.0%
ACTATTACAGGTGATTTACT+TGG - chr6_1:47750289-47750308 Msa0887000:intron 30.0%
!!! TGATTTTTTGCCCAAAAGAA+AGG - chr6_1:47750456-47750475 Msa0887000:CDS 30.0%
! AAAAGAAAAGGGGTGATTTT+AGG + chr6_1:47750549-47750568 None:intergenic 30.0%
CCTTTAACCATCAAAAGAAA+AGG + chr6_1:47750561-47750580 None:intergenic 30.0%
!! CCTTTTCTTTTGATGGTTAA+AGG - chr6_1:47750558-47750577 Msa0887000:intron 30.0%
!! TCTTTTGATGGTTAAAGGTA+TGG - chr6_1:47750563-47750582 Msa0887000:intron 30.0%
GATGCATAACATTACTTTGA+AGG - chr6_1:47750603-47750622 Msa0887000:intron 30.0%
TATGTTATGGTATGCATCAA+AGG + chr6_1:47750699-47750718 None:intergenic 30.0%
! TATGGTTGGTTACATAAACT+TGG - chr6_1:47750817-47750836 Msa0887000:intron 30.0%
ATCCAAGGAAAATTCCAATA+GGG + chr6_1:47750865-47750884 None:intergenic 30.0%
AATCCAAGGAAAATTCCAAT+AGG + chr6_1:47750866-47750885 None:intergenic 30.0%
! GTCAGTCCCTTTAAAAAAAA+CGG - chr6_1:47751231-47751250 Msa0887000:CDS 30.0%
! ATGTTGGTTAAAACTTGTAG+TGG - chr6_1:47751414-47751433 Msa0887000:intron 30.0%
GTAGATAAATGATGCCAAAT+AGG + chr6_1:47751443-47751462 None:intergenic 30.0%
!!! CTAAACAGAAGCACTTTTTT+TGG + chr6_1:47751466-47751485 None:intergenic 30.0%
TTCTACCTTTACTATATGCT+TGG - chr6_1:47751509-47751528 Msa0887000:intron 30.0%
! CTTTTCCAAGCATATAGTAA+AGG + chr6_1:47751517-47751536 None:intergenic 30.0%
TATATGTGTTATAGGGTCTT+TGG - chr6_1:47751593-47751612 Msa0887000:intron 30.0%
ATATGTGTTATAGGGTCTTT+GGG - chr6_1:47751594-47751613 Msa0887000:intron 30.0%
GTTGAACATAATTACCTCAT+TGG + chr6_1:47751689-47751708 None:intergenic 30.0%
CCACAACTACACATTTAAAA+TGG + chr6_1:47752077-47752096 None:intergenic 30.0%
! CCATTTTAAATGTGTAGTTG+TGG - chr6_1:47752074-47752093 Msa0887000:intron 30.0%
GGAAAAAGTTATAAATGGAG+AGG + chr6_1:47752156-47752175 None:intergenic 30.0%
ACCCACTATAATTTGAACTT+TGG - chr6_1:47752452-47752471 Msa0887000:CDS 30.0%
CCCAAAGTTCAAATTATAGT+GGG + chr6_1:47752456-47752475 None:intergenic 30.0%
CCCACTATAATTTGAACTTT+GGG - chr6_1:47752453-47752472 Msa0887000:CDS 30.0%
! CTAGTATAAAGAGTATAAGC+AGG + chr6_1:47752511-47752530 None:intergenic 30.0%
CTGCTTATACTCTTTATACT+AGG - chr6_1:47752509-47752528 Msa0887000:CDS 30.0%
GAGTTCTTGAGTCATTAATT+TGG + chr6_1:47752539-47752558 None:intergenic 30.0%
TCAAATTCACCTACATTTCA+TGG - chr6_1:47752661-47752680 Msa0887000:CDS 30.0%
CTCAGAAAACATCAATACAA+TGG + chr6_1:47752713-47752732 None:intergenic 30.0%
AGTTTAAATGAGACAAGGAA+GGG + chr6_1:47753086-47753105 None:intergenic 30.0%
TCTTCAGTGTCAATTTAGGT+GGG - chr6_1:47748438-47748457 Msa0887000:intron 35.0%
! GATGGGTAAATTGATAGCAA+TGG + chr6_1:47748763-47748782 None:intergenic 35.0%
! GCTTGAAGAAATTTCTGGAT+GGG + chr6_1:47748780-47748799 None:intergenic 35.0%
! TGCTTGAAGAAATTTCTGGA+TGG + chr6_1:47748781-47748800 None:intergenic 35.0%
GTATTTGATTGGGGAATAAC+TGG - chr6_1:47748882-47748901 Msa0887000:intron 35.0%
GCTCAACTAATTTATGCCAT+TGG - chr6_1:47748948-47748967 Msa0887000:intron 35.0%
ATTGTCTTGGATGGCATTTA+GGG - chr6_1:47748995-47749014 Msa0887000:intron 35.0%
GATGGCATTTAGGGAATTAT+GGG - chr6_1:47749004-47749023 Msa0887000:intron 35.0%
GGAGTTTACTAAGCTAAGTT+TGG - chr6_1:47749025-47749044 Msa0887000:intron 35.0%
ACAATCATTATCCTTCTTGC+TGG - chr6_1:47749086-47749105 Msa0887000:intron 35.0%
CTCTTGGTTCCTATTCAATT+TGG - chr6_1:47749132-47749151 Msa0887000:intron 35.0%
!! TTAGCCTTAATATTCAGGGT+TGG - chr6_1:47749470-47749489 Msa0887000:intron 35.0%
!! AGTTTTGTCATGTAGCATCA+AGG + chr6_1:47749862-47749881 None:intergenic 35.0%
!! AAAGAGTACTTAGATGCTCT+TGG + chr6_1:47750097-47750116 None:intergenic 35.0%
AGCATCTAAGTACTCTTTCT+TGG - chr6_1:47750099-47750118 Msa0887000:intron 35.0%
ATCTAAGTACTCTTTCTTGG+TGG - chr6_1:47750102-47750121 Msa0887000:intron 35.0%
! ATCACTGTTGGTAAAGATGA+AGG + chr6_1:47750197-47750216 None:intergenic 35.0%
AGTGAATTAGCATACCTTCT+TGG - chr6_1:47750235-47750254 Msa0887000:intron 35.0%
!! TGAAACACTGTTGATAACCA+TGG + chr6_1:47750266-47750285 None:intergenic 35.0%
! AATCACCCCTTTTCTTTTGA+TGG - chr6_1:47750551-47750570 Msa0887000:intron 35.0%
! TGATGGTTAAAGGTATGGAT+TGG - chr6_1:47750568-47750587 Msa0887000:intron 35.0%
GAGTGAAGGCTTATATGTTA+TGG + chr6_1:47750712-47750731 None:intergenic 35.0%
AATATCACTCTTGAGAGTGA+AGG + chr6_1:47750726-47750745 None:intergenic 35.0%
GAATATTTAGGTGTGGTCAT+TGG - chr6_1:47750779-47750798 Msa0887000:intron 35.0%
TATATTGTTGGACTCCCTAT+TGG - chr6_1:47750848-47750867 Msa0887000:intron 35.0%
TTAAGCTTGCCGAGATAATA+TGG - chr6_1:47751124-47751143 Msa0887000:CDS 35.0%
GGTCAACTACCATATTATCT+CGG + chr6_1:47751136-47751155 None:intergenic 35.0%
TCCTAGAGTCCTAAATATGT+TGG - chr6_1:47751398-47751417 Msa0887000:intron 35.0%
! ACCAACATATTTAGGACTCT+AGG + chr6_1:47751402-47751421 None:intergenic 35.0%
!! ATATGCTTGGAAAAGCACTA+TGG - chr6_1:47751522-47751541 Msa0887000:intron 35.0%
TATGTGTTATAGGGTCTTTG+GGG - chr6_1:47751595-47751614 Msa0887000:intron 35.0%
TTATCTTGTCGGTCTGATTA+AGG + chr6_1:47751968-47751987 None:intergenic 35.0%
GTGGTGATAGTTTATCTTGT+CGG + chr6_1:47751979-47751998 None:intergenic 35.0%
GTGTTGCATACTATATGTAG+GGG + chr6_1:47752123-47752142 None:intergenic 35.0%
CGTGTTGCATACTATATGTA+GGG + chr6_1:47752124-47752143 None:intergenic 35.0%
CCTACATATAGTATGCAACA+CGG - chr6_1:47752122-47752141 Msa0887000:intron 35.0%
CTACATATAGTATGCAACAC+GGG - chr6_1:47752123-47752142 Msa0887000:intron 35.0%
TGTGTCTCTATCTTTCCAAA+TGG + chr6_1:47752177-47752196 None:intergenic 35.0%
GCCCAAAGTTCAAATTATAG+TGG + chr6_1:47752457-47752476 None:intergenic 35.0%
TTCAGAGAGCAAACACTTTA+AGG - chr6_1:47752478-47752497 Msa0887000:CDS 35.0%
CAACTCTTCTTACACTTTGT+TGG - chr6_1:47752592-47752611 Msa0887000:CDS 35.0%
TCTCGTAACTACATCTCAAA+TGG + chr6_1:47752636-47752655 None:intergenic 35.0%
TAGATGTACATACTCGAGTT+TGG - chr6_1:47752736-47752755 Msa0887000:CDS 35.0%
! GAGCTCTAACAAAGTTCAAA+AGG - chr6_1:47752908-47752927 Msa0887000:five_prime_UTR 35.0%
! TGGCAAGACCTTTTCTATTA+CGG - chr6_1:47752951-47752970 Msa0887000:five_prime_UTR 35.0%
GAGTTTAAATGAGACAAGGA+AGG + chr6_1:47753087-47753106 None:intergenic 35.0%
!! ATGGTGAGTTCGTTTGTTAT+AGG - chr6_1:47753111-47753130 Msa0887000:five_prime_UTR 35.0%
GTTGTATAACCCACTTGAGT+TGG - chr6_1:47748355-47748374 Msa0887000:three_prime_UTR 40.0%
ACTACTAGACCAACTCAAGT+GGG + chr6_1:47748367-47748386 None:intergenic 40.0%
TACTACTAGACCAACTCAAG+TGG + chr6_1:47748368-47748387 None:intergenic 40.0%
!! TTGGTCTAGTAGTACTGACT+TGG - chr6_1:47748374-47748393 Msa0887000:exon 40.0%
!! TGGTCTAGTAGTACTGACTT+GGG - chr6_1:47748375-47748394 Msa0887000:exon 40.0%
CTCTTCAGTGTCAATTTAGG+TGG - chr6_1:47748437-47748456 Msa0887000:intron 40.0%
!! GGTCAGCTATTTCTTGTTCT+TGG + chr6_1:47748698-47748717 None:intergenic 40.0%
GAATTGCATATTTGCCAGCT+AGG + chr6_1:47748719-47748738 None:intergenic 40.0%
GCTATGGCAAGTAATATCAC+AGG - chr6_1:47748909-47748928 Msa0887000:intron 40.0%
TGGCAAGTAATATCACAGGA+TGG - chr6_1:47748913-47748932 Msa0887000:intron 40.0%
GGCAAGTAATATCACAGGAT+GGG - chr6_1:47748914-47748933 Msa0887000:intron 40.0%
GCAAGTAATATCACAGGATG+GGG - chr6_1:47748915-47748934 Msa0887000:intron 40.0%
TCCTTCTTTACACCAACCAA+TGG + chr6_1:47748967-47748986 None:intergenic 40.0%
! TTGGTTGGTGTAAAGAAGGA+TGG - chr6_1:47748967-47748986 Msa0887000:intron 40.0%
TGGTGTAAAGAAGGATGGAA+TGG - chr6_1:47748972-47748991 Msa0887000:intron 40.0%
!! AAGGATGGAATGGATTGTCT+TGG - chr6_1:47748982-47749001 Msa0887000:intron 40.0%
!! ATGGAATGGATTGTCTTGGA+TGG - chr6_1:47748986-47749005 Msa0887000:intron 40.0%
GATTGTCTTGGATGGCATTT+AGG - chr6_1:47748994-47749013 Msa0887000:intron 40.0%
GGATGGCATTTAGGGAATTA+TGG - chr6_1:47749003-47749022 Msa0887000:intron 40.0%
GAGCAATCACAGGATTATCA+AGG + chr6_1:47749115-47749134 None:intergenic 40.0%
GATAATCCTGTGATTGCTCT+TGG - chr6_1:47749116-47749135 Msa0887000:intron 40.0%
CGTTCCAACCCTGAATATTA+AGG + chr6_1:47749477-47749496 None:intergenic 40.0%
TTGGACTAAGTACAGCACTA+AGG - chr6_1:47749509-47749528 Msa0887000:intron 40.0%
GTTCGTGTCTCTAATACACT+TGG - chr6_1:47750061-47750080 Msa0887000:intron 40.0%
ATGTCTCAGTCTCTTCTCAT+TGG - chr6_1:47750127-47750146 Msa0887000:intron 40.0%
ATACCTTCTTGGTATCACCA+TGG - chr6_1:47750246-47750265 Msa0887000:intron 40.0%
TAACCATGGTGATACCAAGA+AGG + chr6_1:47750252-47750271 None:intergenic 40.0%
! GCGAGTTTCACCTTTCTTTT+GGG + chr6_1:47750469-47750488 None:intergenic 40.0%
! AGCGAGTTTCACCTTTCTTT+TGG + chr6_1:47750470-47750489 None:intergenic 40.0%
! CTCCCTATTGGAATTTTCCT+TGG - chr6_1:47750860-47750879 Msa0887000:intron 40.0%
CTTGGATTCAACCAGCATTT+GGG - chr6_1:47750878-47750897 Msa0887000:intron 40.0%
TTGGATTCAACCAGCATTTG+GGG - chr6_1:47750879-47750898 Msa0887000:intron 40.0%
ACTTGTAGTGGTTGCCTATT+TGG - chr6_1:47751426-47751445 Msa0887000:intron 40.0%
AATTACCTCATTGGTCCAGT+TGG + chr6_1:47751680-47751699 None:intergenic 40.0%
CCGTGTTGCATACTATATGT+AGG + chr6_1:47752125-47752144 None:intergenic 40.0%
!! CGTCTGTCAATTTGTTGATC+TGG - chr6_1:47752285-47752304 Msa0887000:CDS 40.0%
CAGCTAATCGCATGAGAATT+TGG - chr6_1:47752886-47752905 Msa0887000:five_prime_UTR 40.0%
!! AGTAGTACTGACTTGGGATC+TGG - chr6_1:47748381-47748400 Msa0887000:CDS 45.0%
GAATCGAACATGAGACCTTG+AGG + chr6_1:47748418-47748437 None:intergenic 45.0%
GCAGGGCAATTTCAAAATGC+TGG - chr6_1:47748576-47748595 Msa0887000:intron 45.0%
! AGGCAAGAGGAGTATACAAG+TGG + chr6_1:47748637-47748656 None:intergenic 45.0%
CAAGAAATAGCTGACCTAGC+TGG - chr6_1:47748702-47748721 Msa0887000:intron 45.0%
! GGGAATAACTGGCTTAGCTA+TGG - chr6_1:47748893-47748912 Msa0887000:intron 45.0%
TATCACAGGATGGGGATTTG+CGG - chr6_1:47748923-47748942 Msa0887000:intron 45.0%
! GCCATTGGTTGGTGTAAAGA+AGG - chr6_1:47748963-47748982 Msa0887000:intron 45.0%
TATCAAGGTAGCCAGCAAGA+AGG + chr6_1:47749100-47749119 None:intergenic 45.0%
TAGGAACCAAGAGCAATCAC+AGG + chr6_1:47749125-47749144 None:intergenic 45.0%
ACTTAGTCCAAGAAGCAGCA+TGG + chr6_1:47749500-47749519 None:intergenic 45.0%
TAGAGACACGAACACTTGCA+AGG + chr6_1:47750054-47750073 None:intergenic 45.0%
TTAGGTGTGGTCATTGGATG+TGG - chr6_1:47750785-47750804 Msa0887000:intron 45.0%
TGGATGTGGATGGCAAGTTA+TGG - chr6_1:47750799-47750818 Msa0887000:intron 45.0%
TGTGGATGGCAAGTTATGGT+TGG - chr6_1:47750803-47750822 Msa0887000:intron 45.0%
! CCAAATGCTGGTTGAATCCA+AGG + chr6_1:47750880-47750899 None:intergenic 45.0%
CCTTGGATTCAACCAGCATT+TGG - chr6_1:47750877-47750896 Msa0887000:intron 45.0%
TGGATTCAACCAGCATTTGG+GGG - chr6_1:47750880-47750899 Msa0887000:intron 45.0%
TAAGACCAACTGGACCAATG+AGG - chr6_1:47751672-47751691 Msa0887000:intron 45.0%
! ATGTGTAGTTGTGGGGTGTT+CGG - chr6_1:47752083-47752102 Msa0887000:intron 45.0%
ACATCACTTGAAATGTCGCG+TGG - chr6_1:47752931-47752950 Msa0887000:five_prime_UTR 45.0%
!!! ATTTTATTTTATAGTTTATA+TGG - chr6_1:47752839-47752858 Msa0887000:five_prime_UTR 5.0%
TCGAACATGAGACCTTGAGG+AGG + chr6_1:47748415-47748434 None:intergenic 50.0%
ACTGCCATAGCAACACTGTG+TGG - chr6_1:47748540-47748559 Msa0887000:intron 50.0%
! TTGGCCACACAGTGTTGCTA+TGG + chr6_1:47748547-47748566 None:intergenic 50.0%
ACACTGTGTGGCCAAGCTTA+TGG - chr6_1:47748552-47748571 Msa0887000:intron 50.0%
ATTGCCCTGCACCATAAGCT+TGG + chr6_1:47748566-47748585 None:intergenic 50.0%
GTGTGGTCATTGGATGTGGA+TGG - chr6_1:47750789-47750808 Msa0887000:intron 50.0%
ATACCTTCACCCCCAAATGC+TGG + chr6_1:47750892-47750911 None:intergenic 50.0%
! GTGTTATAGGGTCTTTGGGG+AGG - chr6_1:47751598-47751617 Msa0887000:intron 50.0%
TGTGGCCAAGCTTATGGTGC+AGG - chr6_1:47748558-47748577 Msa0887000:intron 55.0%
GTGGCCAAGCTTATGGTGCA+GGG - chr6_1:47748559-47748578 Msa0887000:intron 55.0%
! TGGAACGCCATGCTGCTTCT+TGG - chr6_1:47749490-47749509 Msa0887000:intron 55.0%
CAACCAGCATTTGGGGGTGA+AGG - chr6_1:47750886-47750905 Msa0887000:intron 55.0%
! CTTTGGGGAGGCACAATGTG+CGG - chr6_1:47751610-47751629 Msa0887000:intron 55.0%
!! CGATGGTGGGACTCACTTAG+TGG - chr6_1:47752218-47752237 Msa0887000:CDS 55.0%
! CTGGAGCTTGCTCCTCCTCA+AGG - chr6_1:47748400-47748419 Msa0887000:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 47748164 47753158 47748164 ID=Msa0887000;Name=Msa0887000
chr6_1 mRNA 47748164 47753158 47748164 ID=Msa0887000-mRNA-1;Parent=Msa0887000;Name=Msa0887000-mRNA-1;_AED=0.19;_eAED=0.19;_QI=370|0.8|0.83|1|0.6|0.83|6|217|381
chr6_1 exon 47748164 47748446 47748164 ID=Msa0887000-mRNA-1:exon:9999;Parent=Msa0887000-mRNA-1
chr6_1 exon 47749629 47749715 47749629 ID=Msa0887000-mRNA-1:exon:9998;Parent=Msa0887000-mRNA-1
chr6_1 exon 47750415 47750533 47750415 ID=Msa0887000-mRNA-1:exon:9997;Parent=Msa0887000-mRNA-1
chr6_1 exon 47751066 47751262 47751066 ID=Msa0887000-mRNA-1:exon:9996;Parent=Msa0887000-mRNA-1
chr6_1 exon 47751792 47751848 47751792 ID=Msa0887000-mRNA-1:exon:9995;Parent=Msa0887000-mRNA-1
chr6_1 exon 47752169 47753158 47752169 ID=Msa0887000-mRNA-1:exon:9994;Parent=Msa0887000-mRNA-1
chr6_1 five_prime_UTR 47752789 47753158 47752789 ID=Msa0887000-mRNA-1:five_prime_utr;Parent=Msa0887000-mRNA-1
chr6_1 CDS 47752169 47752788 47752169 ID=Msa0887000-mRNA-1:cds;Parent=Msa0887000-mRNA-1
chr6_1 CDS 47751792 47751848 47751792 ID=Msa0887000-mRNA-1:cds;Parent=Msa0887000-mRNA-1
chr6_1 CDS 47751066 47751262 47751066 ID=Msa0887000-mRNA-1:cds;Parent=Msa0887000-mRNA-1
chr6_1 CDS 47750415 47750533 47750415 ID=Msa0887000-mRNA-1:cds;Parent=Msa0887000-mRNA-1
chr6_1 CDS 47749629 47749715 47749629 ID=Msa0887000-mRNA-1:cds;Parent=Msa0887000-mRNA-1
chr6_1 CDS 47748381 47748446 47748381 ID=Msa0887000-mRNA-1:cds;Parent=Msa0887000-mRNA-1
chr6_1 three_prime_UTR 47748164 47748380 47748164 ID=Msa0887000-mRNA-1:three_prime_utr;Parent=Msa0887000-mRNA-1
Gene Sequence

>Msa0887000

ATGTCAACTGCCATAGCAACACTGTGTGGCCAAGCTTATGGTGCAGGGCAATTTCAAAATGCTGGTATTTATGTTCAAAGATCATGTATTATACTCTTCACCACTTGTATACTCCTCTTGCCTATTAATATATATGCAACTCCAATCTTAAAATTTCTTGGCCAAGAACAAGAAATAGCTGACCTAGCTGGCAAATATGCAATTCTTATAACTCCATACATGTTTTCCATTGCTATCAATTTACCCATCCAGAAATTTCTTCAAGCACAAAGTGAAGTTAAAGTTATTATGTACATAGCAATTGTGATATTGCTAATACAAAATGGTCTACTTTATATCTTCATCAGTGTATTTGATTGGGGAATAACTGGCTTAGCTATGGCAAGTAATATCACAGGATGGGGATTTGCGGTTGCTCAACTAATTTATGCCATTGGTTGGTGTAAAGAAGGATGGAATGGATTGTCTTGGATGGCATTTAGGGAATTATGGGAGTTTACTAAGCTAAGTTTGGGTTCATCTGTAATGATCTGTTTAGAACAGTGGTATACTACAATCATTATCCTTCTTGCTGGCTACCTTGATAATCCTGTGATTGCTCTTGGTTCCTATTCAATTTGCCTTAATATTCAGGGTTGGAACGCCATGCTGCTTCTTGGACTAAGTACAGCACTAAGTGTTCGTGTCTCTAATACACTTGGAATGTCACATCCAAGAGCATCTAAGTACTCTTTCTTGGTGGCAATGTCTCAGTCTCTTCTCATTGGAACCATTTTCATGACTGTTATTTTCTTGAGTAAAGAAAAGTTTGCCTTCATCTTTACCAACAGTGATGATTTGATACATGCTGCAAGTGAATTAGCATACCTTCTTGGTGTGGTCATTGGATGTGGATGGCAAGTTATGGTTGGTTACATAAACTTGGCATGTTATTATATTGTTGGACTCCCTATTGGAATTTTCCTTGGATTCAACCAGCATTTGGGGGTGAAGGGTCTTTGGGGAGGCACAATGTGCGGCAATATTCTTCAGATTTTAGTCCTCGTAGTCATTATATATAAGACCAACTGGACCAATGAGGTAGAGCAAACAGCTAATCGCATGAGAATTTGGAGCTCTAACAAAGTTCAAAAGGACATCACTTGA
Protein sequence

>Msa0887000

MSTAIATLCGQAYGAGQFQNAGIYVQRSCIILFTTCILLLPINIYATPILKFLGQEQEIADLAGKYAILITPYMFSIAINLPIQKFLQAQSEVKVIMYIAIVILLIQNGLLYIFISVFDWGITGLAMASNITGWGFAVAQLIYAIGWCKEGWNGLSWMAFRELWEFTKLSLGSSVMICLEQWYTTIIILLAGYLDNPVIALGSYSICLNIQGWNAMLLLGLSTALSVRVSNTLGMSHPRASKYSFLVAMSQSLLIGTIFMTVIFLSKEKFAFIFTNSDDLIHAASELAYLLGVVIGCGWQVMVGYINLACYYIVGLPIGIFLGFNQHLGVKGLWGGTMCGNILQILVLVVIIYKTNWTNEVEQTANRMRIWSSNKVQKDIT*