AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0815950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815950 MtrunA17_Chr5g0434671 90.652 460 10 1 1 460 1 427 0.0 837
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0815950 AT1G66330.1 62.117 359 86 3 104 451 81 400 7.74e-128 377
Msa0815950 AT1G66330.2 62.117 359 86 3 104 451 81 400 7.74e-128 377

Find 123 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAATTCTGTCCCTAAAA+AGG 0.241678 5_3:-49706682 None:intergenic
AGAACCACAAATTCCTTTCT+TGG 0.277347 5_3:+49709003 Msa0815950:CDS
GAGAAACTTTGCATCGTTAC+AGG 0.311814 5_3:-49706177 None:intergenic
GATCCCTTATCTCTGAAAAT+AGG 0.313256 5_3:-49708931 None:intergenic
CCGAAACCAGTCATTGAATA+AGG 0.321628 5_3:-49705746 None:intergenic
GTCACTTTCCAATGATCATA+TGG 0.321930 5_3:-49711021 None:intergenic
TTAATTCTGGGGAGGCATTC+AGG 0.324186 5_3:-49710773 None:intergenic
CTGGAGTGACGGGGCCTTAG+AGG 0.337435 5_3:+49707110 Msa0815950:CDS
TCAAGGGTTAGACTCGAAAA+TGG 0.338957 5_3:+49705685 Msa0815950:CDS
GAAGCTAAACTAACCTCTTC+AGG 0.339327 5_3:-49709238 None:intergenic
CCTTATTCAATGACTGGTTT+CGG 0.341454 5_3:+49705746 Msa0815950:CDS
GAACCACAAATTCCTTTCTT+GGG 0.342712 5_3:+49709004 Msa0815950:CDS
ATCTTCCATGGCACGTTGCT+TGG 0.348175 5_3:-49708186 None:intergenic
GTCTTGGAGATTAAACTAAC+TGG 0.351920 5_3:-49705787 None:intergenic
ACAGAATTTCTCAAACTTGA+TGG 0.355828 5_3:+49706693 Msa0815950:CDS
GATCGTATTCGTTCTGTTCG+TGG 0.356798 5_3:+49706131 Msa0815950:CDS
ATACAGTAGCAATACGATTA+AGG 0.363525 5_3:-49706937 None:intergenic
ATTTAACAGATTTACCTCTA+AGG 0.373384 5_3:-49707124 None:intergenic
GTCTAATGTTTGAAGTGATA+TGG 0.373629 5_3:+49707422 Msa0815950:CDS
AGTATCTATAGGAAGCTTAC+TGG 0.373975 5_3:+49709167 Msa0815950:intron
GTCGATTATTAGATGGAGAT+TGG 0.376730 5_3:+49710867 Msa0815950:three_prime_UTR
GATGCTGCAGCTGCAATGGC+TGG 0.379748 5_3:-49710591 None:intergenic
TGATCTTCTGATGGCACTTA+CGG 0.391058 5_3:+49705567 Msa0815950:exon
ATATGGGTTAATCCTTGAAA+TGG 0.397394 5_3:-49711004 None:intergenic
AATGCATATAACCAGCATAT+TGG 0.401335 5_3:-49711060 None:intergenic
ATAGGAAGCTTACTGGAGTA+TGG 0.402823 5_3:+49709174 Msa0815950:intron
CTCTCAGAAAATAATGTTAG+AGG 0.404947 5_3:+49708955 Msa0815950:CDS
TTTCAGTTCATATATAGCTT+TGG 0.412176 5_3:-49710613 None:intergenic
ATATCACCTCCAAGGACATA+AGG 0.415173 5_3:-49708211 None:intergenic
GGTAAACGTCGATTATTAGA+TGG 0.417198 5_3:+49710860 Msa0815950:three_prime_UTR
ATATCCACTGCAGATCTTGA+AGG 0.418058 5_3:+49707047 Msa0815950:intron
CCTTACCTGGTACCGACATC+AGG 0.418804 5_3:-49709424 None:intergenic
AAATAGAAGAAGGGGATAGT+TGG 0.418919 5_3:+49710646 Msa0815950:CDS
TAAAACTAATGTAGGATTAA+CGG 0.420561 5_3:+49710793 Msa0815950:three_prime_UTR
GACTGGTTTCGGTTCATCAA+TGG 0.425130 5_3:+49705757 Msa0815950:CDS
ACTGCATGCAGTCCATTTCA+AGG 0.425697 5_3:+49710992 Msa0815950:three_prime_UTR
GGATTAACCCATATGATCAT+TGG 0.432354 5_3:+49711013 Msa0815950:three_prime_UTR
TTTGGATGCTGCAGCTGCAA+TGG 0.432658 5_3:-49710595 None:intergenic
ACTATACTTGTTGTAATGTA+AGG 0.433287 5_3:+49711152 Msa0815950:intron
CTCTTGGAAACGCAGGGATG+GGG 0.434985 5_3:+49710130 Msa0815950:CDS
CCGATGAGCACTGGAGTGAC+GGG 0.435635 5_3:+49707100 Msa0815950:CDS
AGATATTTCAAGTGCTATGA+AGG 0.439383 5_3:+49705521 Msa0815950:five_prime_UTR
TACTTTCTTTGATCTTCTGA+TGG 0.439563 5_3:+49705558 Msa0815950:exon
TTTATGCCAAAGAGGGCAAA+AGG 0.442446 5_3:-49711231 None:intergenic
AGAACGGATTACTGCTCTTC+AGG 0.442816 5_3:+49709038 Msa0815950:CDS
TCTGTCTCATGTAAATCAAC+AGG 0.443072 5_3:+49705814 Msa0815950:CDS
GGATAGTTGGAGGTTTATGA+TGG 0.443543 5_3:+49710659 Msa0815950:CDS
AACTGTATTCTGTTTATCCT+TGG 0.449791 5_3:-49705661 None:intergenic
ACTCTTGGAAACGCAGGGAT+GGG 0.451755 5_3:+49710129 Msa0815950:CDS
CGAATCATGCTTGAAAAGAA+TGG 0.454171 5_3:+49708979 Msa0815950:CDS
CTGCATAGCTCGGGCAAGAA+AGG 0.454178 5_3:+49706871 Msa0815950:intron
TAGAAGAAGGGGATAGTTGG+AGG 0.461239 5_3:+49710649 Msa0815950:CDS
GGAAGATGCCCTTATGTCCT+TGG 0.463046 5_3:+49708202 Msa0815950:CDS
TAAACACAGTGTATCTTTGT+TGG 0.464348 5_3:+49709384 Msa0815950:CDS
TTTCCAAGAGTCCACATAGA+TGG 0.475502 5_3:-49710117 None:intergenic
GCACCATCTATGTGGACTCT+TGG 0.478002 5_3:+49710114 Msa0815950:CDS
GATCAACCTTATTCAATGAC+TGG 0.479668 5_3:+49705740 Msa0815950:CDS
ACATGAGACAGAAGATGTCT+TGG 0.481154 5_3:-49705803 None:intergenic
TATCACCTCCAAGGACATAA+GGG 0.487860 5_3:-49708210 None:intergenic
GACTCTTGGAAACGCAGGGA+TGG 0.489246 5_3:+49710128 Msa0815950:CDS
GCCGATGAGCACTGGAGTGA+CGG 0.489465 5_3:+49707099 Msa0815950:CDS
GTTGCTCTATTAGTCAAGAT+AGG 0.494347 5_3:-49705610 None:intergenic
ACGTTGCTTGGCACGGAAGT+CGG 0.495141 5_3:-49708174 None:intergenic
TCACTTTCCAATGATCATAT+GGG 0.495226 5_3:-49711020 None:intergenic
ATCCCCAAGAAAGGAATTTG+TGG 0.496739 5_3:-49709007 None:intergenic
ATTATTAGATGGAGATTGGA+TGG 0.508411 5_3:+49710871 Msa0815950:three_prime_UTR
TGCCGTCACATCCCCAAGAA+AGG 0.509048 5_3:-49709016 None:intergenic
AATCCTGCAGTCACTATAGT+TGG 0.509869 5_3:+49710839 Msa0815950:three_prime_UTR
GGAAGTAAATGAAAATAGGT+AGG 0.511324 5_3:-49704604 None:intergenic
AGCAATGGGAAATAGAAGAA+GGG 0.512568 5_3:+49710637 Msa0815950:CDS
ATTTCTTCAGTGGCATAATG+AGG 0.515220 5_3:+49706631 Msa0815950:intron
AAGCAATGGGAAATAGAAGA+AGG 0.516781 5_3:+49710636 Msa0815950:CDS
CCCAGAATTAAAACTAATGT+AGG 0.517534 5_3:+49710785 Msa0815950:three_prime_UTR
AACCACAAATTCCTTTCTTG+GGG 0.522590 5_3:+49709005 Msa0815950:CDS
CCATGGCACGTTGCTTGGCA+CGG 0.523891 5_3:-49708181 None:intergenic
AAAGTGCTGCCGATGAGCAC+TGG 0.524125 5_3:+49707091 Msa0815950:CDS
TTCCTTTCTTGGGGATGTGA+CGG 0.526745 5_3:+49709014 Msa0815950:CDS
TAACTATGCCTTTGTTCCAC+AGG 0.536157 5_3:+49704644 Msa0815950:five_prime_UTR
TAGGATTAACGGATCCAGAT+TGG 0.536387 5_3:+49710804 Msa0815950:three_prime_UTR
GTTCCCCTGATGTCGGTACC+AGG 0.542379 5_3:+49709419 Msa0815950:CDS
CTTCAGTGGCATAATGAGGA+TGG 0.542595 5_3:+49706635 Msa0815950:intron
TTTCAAGTGCTATGAAGGCC+AGG 0.543283 5_3:+49705526 Msa0815950:five_prime_UTR
GGACATAAGGGCATCTTCCA+TGG 0.546770 5_3:-49708198 None:intergenic
CCCGTCACTCCAGTGCTCAT+CGG 0.553203 5_3:-49707100 None:intergenic
TCTTGGAAACGCAGGGATGG+GGG 0.560998 5_3:+49710131 Msa0815950:CDS
TTACCAACTATAGTGACTGC+AGG 0.564331 5_3:-49710842 None:intergenic
TCTTATAGACCTTGATGCAA+TGG 0.567724 5_3:+49709357 Msa0815950:CDS
CCGTGCCAAGCAACGTGCCA+TGG 0.568141 5_3:+49708181 Msa0815950:CDS
TCTGCACTTTCTGAAGCAGA+TGG 0.572909 5_3:+49709199 Msa0815950:CDS
TGAAGTGATATGGCCTGAAA+AGG 0.573532 5_3:+49707432 Msa0815950:CDS
TGATTACACTGATCCTGAAG+AGG 0.574801 5_3:+49709225 Msa0815950:CDS
ACGAGCTTTAGCGAAGGCAC+TGG 0.575429 5_3:+49710086 Msa0815950:CDS
CTTACCTGGTACCGACATCA+GGG 0.576473 5_3:-49709423 None:intergenic
CTTGTTGTAGAGGCTGGCCG+AGG 0.577303 5_3:+49710560 Msa0815950:intron
ATGTGGACTCTTGGAAACGC+AGG 0.578590 5_3:+49710123 Msa0815950:CDS
GTTTACCGTCCATTGCATCA+AGG 0.580602 5_3:-49709366 None:intergenic
GCAATGGGAAATAGAAGAAG+GGG 0.584212 5_3:+49710638 Msa0815950:CDS
CTTGTAAGATGCCAATATGC+TGG 0.584262 5_3:+49711049 Msa0815950:three_prime_UTR
GGCTGTTGAGCAAATTATGT+AGG 0.594856 5_3:-49711180 None:intergenic
CGATGAGCACTGGAGTGACG+GGG 0.596211 5_3:+49707101 Msa0815950:CDS
AGTATAAAATATCACCTCCA+AGG 0.600169 5_3:-49708219 None:intergenic
GCTTGGCACGGAAGTCGGCA+AGG 0.602685 5_3:-49708169 None:intergenic
AAAACTGACCTGTGGAACAA+AGG 0.609208 5_3:-49704652 None:intergenic
TAGTCATCTCAGTCGTACAA+TGG 0.612797 5_3:-49710954 None:intergenic
TGGCAGCAGCACCATCTATG+TGG 0.613054 5_3:+49710106 Msa0815950:CDS
TGTTCTAGTTCCCCTGATGT+CGG 0.616561 5_3:+49709412 Msa0815950:CDS
TCTTGCTCACCATCATGTCA+TGG 0.617464 5_3:-49708384 None:intergenic
TTGGGGATGTGACGGCAGAA+CGG 0.619552 5_3:+49709022 Msa0815950:CDS
TGTGGACTCTTGGAAACGCA+GGG 0.628626 5_3:+49710124 Msa0815950:CDS
GCAACACTTTGTAGATCACA+TGG 0.633717 5_3:+49705628 Msa0815950:CDS
TTCTAGACGAGCTTTAGCGA+AGG 0.635480 5_3:+49710080 Msa0815950:intron
AGATGCCCTTATGTCCTTGG+AGG 0.646483 5_3:+49708205 Msa0815950:CDS
ATAGACCTTGATGCAATGGA+CGG 0.648829 5_3:+49709361 Msa0815950:CDS
AATGGCTGGATTGCTATCCT+CGG 0.650744 5_3:-49710577 None:intergenic
ACGGCAAACAAAGTTTCAAG+CGG 0.658042 5_3:+49705586 Msa0815950:CDS
ATGATGTTTCTGATTTGACT+CGG 0.661077 5_3:+49705878 Msa0815950:CDS
ACGATGCAAAGTTTCTCTCA+CGG 0.666602 5_3:+49706183 Msa0815950:CDS
CACATGGATCTTCATCACCA+AGG 0.668703 5_3:+49705644 Msa0815950:CDS
AAACAACCCAGATAAAAGCA+TGG 0.675395 5_3:-49711201 None:intergenic
AAGAAAGTATGAGATACACC+TGG 0.684979 5_3:-49705544 None:intergenic
TATGATGGATGAAAGCAGCA+AGG 0.691727 5_3:+49710674 Msa0815950:CDS
TTACCTGGTACCGACATCAG+GGG 0.705857 5_3:-49709422 None:intergenic
GATACTGAGAAAATCGACCG+TGG 0.757796 5_3:+49706893 Msa0815950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG - chr5_3:49708284-49708303 None:intergenic 0.0%
!! ATAAAAAACTTAATTAGTTA+AGG - chr5_3:49704859-49704878 None:intergenic 10.0%
!!! AATATATTTCTAAAAAGATA+TGG - chr5_3:49706318-49706337 None:intergenic 10.0%
!!! ACATTTAATTATTTAGAATA+TGG - chr5_3:49706541-49706560 None:intergenic 10.0%
!! TTATTTATAATTCATATGAA+TGG + chr5_3:49708090-49708109 Msa0815950:intron 10.0%
!! ATAGAACAAATTTATTTATT+TGG - chr5_3:49708334-49708353 None:intergenic 10.0%
!! GTTTAAATAATTAAATACTA+CGG - chr5_3:49708722-49708741 None:intergenic 10.0%
!!! TTCTAAAAAAAATGATTTTA+AGG - chr5_3:49710334-49710353 None:intergenic 10.0%
!!! GTTTTTTATACATCTAATAT+TGG + chr5_3:49704870-49704889 Msa0815950:intron 15.0%
!! AGTTTGACATATAATAAAAT+TGG - chr5_3:49705979-49705998 None:intergenic 15.0%
!!! ATTTTATTATATGTCAAACT+AGG + chr5_3:49705979-49705998 Msa0815950:intron 15.0%
!!! TCTTTTTAGAAATATATTGT+TGG + chr5_3:49706320-49706339 Msa0815950:intron 15.0%
!! TATATCACATTATTTAAACA+AGG - chr5_3:49706731-49706750 None:intergenic 15.0%
!! AAAAAATAGTTACATTTCAA+TGG - chr5_3:49706783-49706802 None:intergenic 15.0%
!! TATCAATATGAATATGAATA+GGG + chr5_3:49709859-49709878 Msa0815950:intron 15.0%
!! TTAAAACCTTATAATTGAAA+TGG + chr5_3:49709998-49710017 Msa0815950:intron 15.0%
!!! AAAAAATGATTTTAAGGAAT+GGG - chr5_3:49710328-49710347 None:intergenic 15.0%
!!! AAAAAAATGATTTTAAGGAA+TGG - chr5_3:49710329-49710348 None:intergenic 15.0%
!!! GTTTTAATTATTAGATTTTC+AGG - chr5_3:49710712-49710731 None:intergenic 15.0%
!!! GTTTTAAATAATTTCTCAAT+TGG - chr5_3:49710739-49710758 None:intergenic 15.0%
!!! TTTTGGAAGTAAATGAAAAT+AGG - chr5_3:49704611-49704630 None:intergenic 20.0%
!!! GTTAGTTTTTCAACTTTTTT+TGG - chr5_3:49704628-49704647 None:intergenic 20.0%
!! TGATTCTTAAAAGAAATGTT+TGG + chr5_3:49705012-49705031 Msa0815950:intron 20.0%
!! TTAAAAGAAATGTTTGGATA+AGG + chr5_3:49705018-49705037 Msa0815950:intron 20.0%
!! AAAGTTATGTTTAACTACTA+AGG - chr5_3:49705212-49705231 None:intergenic 20.0%
!!! TTTTAATTATGCAATGCTTA+GGG - chr5_3:49705246-49705265 None:intergenic 20.0%
!!! TTTTTAATTATGCAATGCTT+AGG - chr5_3:49705247-49705266 None:intergenic 20.0%
!!! CATAATTTTCATTCAAAAAC+AGG - chr5_3:49705406-49705425 None:intergenic 20.0%
!!! CTGTTTTTGAATGAAAATTA+TGG + chr5_3:49705404-49705423 Msa0815950:intron 20.0%
!! TAGTGAAATTCACAATTTAT+GGG - chr5_3:49705441-49705460 None:intergenic 20.0%
!! ATAGTGAAATTCACAATTTA+TGG - chr5_3:49705442-49705461 None:intergenic 20.0%
!! AAACAATAAATAAGAGAATG+AGG - chr5_3:49705484-49705503 None:intergenic 20.0%
!! CTAAAAAAATGGTAACAAAA+TGG - chr5_3:49705953-49705972 None:intergenic 20.0%
!! AAAATTGGCAACTAAAAAAA+TGG - chr5_3:49705964-49705983 None:intergenic 20.0%
!! TTTCAATTACAATTGAAAAC+TGG + chr5_3:49706041-49706060 Msa0815950:intron 20.0%
!!! TACTCAAAAACTATTTTGAA+CGG + chr5_3:49706408-49706427 Msa0815950:intron 20.0%
!!! TTAACTAATTATTTCTTCAG+TGG + chr5_3:49706621-49706640 Msa0815950:intron 20.0%
!!! TCTAGAATTTTCAATTTTTC+TGG + chr5_3:49706966-49706985 Msa0815950:intron 20.0%
!! GAAAGAATACTATTTATCAA+TGG + chr5_3:49706997-49707016 Msa0815950:intron 20.0%
!! ATATTTGTGTAACAATTTGT+TGG + chr5_3:49707232-49707251 Msa0815950:intron 20.0%
!!! AGTGAAAATAGATTTTATAC+AGG + chr5_3:49707366-49707385 Msa0815950:CDS 20.0%
!!! TCACTTTTGATCAATTTTTT+AGG - chr5_3:49707661-49707680 None:intergenic 20.0%
!!! CTTAAAAATTGCTTTTATTG+TGG - chr5_3:49707754-49707773 None:intergenic 20.0%
!! AGTTTAAAAGTTATGTCAAA+AGG - chr5_3:49708133-49708152 None:intergenic 20.0%
!! CTTTCTATTAATCAAGTTTA+TGG - chr5_3:49708764-49708783 None:intergenic 20.0%
!!! ACTAAGATTTTAGTATCTAT+AGG + chr5_3:49709156-49709175 Msa0815950:intron 20.0%
!! TAATTCAATATTGCATAACT+TGG - chr5_3:49709638-49709657 None:intergenic 20.0%
!!! CTCTATTTCTAAAAAATATG+TGG + chr5_3:49709698-49709717 Msa0815950:intron 20.0%
!! GTATCAATATGAATATGAAT+AGG + chr5_3:49709858-49709877 Msa0815950:intron 20.0%
!!! AAAAATGATTTTAAGGAATG+GGG - chr5_3:49710327-49710346 None:intergenic 20.0%
!!! TTAAAAAAAAGCATTTCTAG+TGG - chr5_3:49710445-49710464 None:intergenic 20.0%
!! TAAAACTAATGTAGGATTAA+CGG + chr5_3:49710793-49710812 Msa0815950:three_prime_UTR 20.0%
!!! GATTTTAAGTTGCATTAAAT+CGG - chr5_3:49710919-49710938 None:intergenic 20.0%
! TGATTACTGATCAGAAAATT+AGG + chr5_3:49704899-49704918 Msa0815950:intron 25.0%
! GATTACTGATCAGAAAATTA+GGG + chr5_3:49704900-49704919 Msa0815950:intron 25.0%
! ATAGGAAGATGATTAACTTA+TGG + chr5_3:49704946-49704965 Msa0815950:intron 25.0%
! TAGGAAGATGATTAACTTAT+GGG + chr5_3:49704947-49704966 Msa0815950:intron 25.0%
! AAGAATACAACAATTGATCA+CGG - chr5_3:49705320-49705339 None:intergenic 25.0%
! GAATTTCACTATATCAATGT+TGG + chr5_3:49705450-49705469 Msa0815950:intron 25.0%
!! TAAACAGAATACAGTTTTCA+AGG + chr5_3:49705668-49705687 Msa0815950:CDS 25.0%
!! AAACAGAATACAGTTTTCAA+GGG + chr5_3:49705669-49705688 Msa0815950:CDS 25.0%
! GTTAGCATATAATTAGAATC+AGG - chr5_3:49706221-49706240 None:intergenic 25.0%
!!! AACAGAGACAACATTTTTTT+TGG - chr5_3:49706267-49706286 None:intergenic 25.0%
! CTGGAAAAGAATTCTTTAAT+CGG + chr5_3:49706354-49706373 Msa0815950:intron 25.0%
! GATTGTATAGTGGTTATTAA+AGG - chr5_3:49706385-49706404 None:intergenic 25.0%
! TTGAGTAATTGATTGTATAG+TGG - chr5_3:49706395-49706414 None:intergenic 25.0%
! AATTTAGCAATCATGATTAG+AGG + chr5_3:49706439-49706458 Msa0815950:intron 25.0%
! TGATTAGAGGAGTTATAATA+TGG + chr5_3:49706452-49706471 Msa0815950:intron 25.0%
! ATTTAACAGATTTACCTCTA+AGG - chr5_3:49707127-49707146 None:intergenic 25.0%
! AATTTCCGATACTATATTGT+TGG + chr5_3:49707165-49707184 Msa0815950:intron 25.0%
! ACTAACCAACAATATAGTAT+CGG - chr5_3:49707173-49707192 None:intergenic 25.0%
! TTGATACCATCTTAGAATAT+AGG - chr5_3:49707523-49707542 None:intergenic 25.0%
! AAAAATTGATCAAAAGTGAG+AGG + chr5_3:49707662-49707681 Msa0815950:intron 25.0%
! ACAAAAATTAGACTCATTGA+TGG + chr5_3:49707861-49707880 Msa0815950:intron 25.0%
! ACAGATTAAAAGGATAAACA+AGG + chr5_3:49707886-49707905 Msa0815950:intron 25.0%
! TGTATGGGATAGTAATATAA+AGG - chr5_3:49708038-49708057 None:intergenic 25.0%
! CTCATTATAGAAATCTGTAT+GGG - chr5_3:49708053-49708072 None:intergenic 25.0%
! TCTCATTATAGAAATCTGTA+TGG - chr5_3:49708054-49708073 None:intergenic 25.0%
!! ACCATAGTTTTCTTTTTGAA+TGG + chr5_3:49708574-49708593 Msa0815950:intron 25.0%
! TCCATTCAAAAAGAAAACTA+TGG - chr5_3:49708578-49708597 None:intergenic 25.0%
! TTAATATTTACTCATTCACC+CGG + chr5_3:49708621-49708640 Msa0815950:intron 25.0%
!! TTCTTTTCCATTTTCTTTTC+AGG + chr5_3:49709067-49709086 Msa0815950:intron 25.0%
! AATAGAACCTGAAAAGAAAA+TGG - chr5_3:49709077-49709096 None:intergenic 25.0%
! ATGAATGCATAAATAGTGAT+AGG - chr5_3:49709289-49709308 None:intergenic 25.0%
! AATCATACTAACAAACATCA+TGG - chr5_3:49709512-49709531 None:intergenic 25.0%
!! ATGATGTTTGTTAGTATGAT+TGG + chr5_3:49709511-49709530 Msa0815950:intron 25.0%
!! TTTTACACTTGCTCTTTATT+TGG - chr5_3:49709768-49709787 None:intergenic 25.0%
! AGTGTAAAATATGTGAGTAT+AGG + chr5_3:49709779-49709798 Msa0815950:intron 25.0%
! TCATGATATATATGAACGTA+TGG - chr5_3:49709813-49709832 None:intergenic 25.0%
! ATATGAGATGATAATATGCT+AGG - chr5_3:49709912-49709931 None:intergenic 25.0%
! TTTCAGTTCATATATAGCTT+TGG - chr5_3:49710616-49710635 None:intergenic 25.0%
! TATATGAACTGAAAAAGCAA+TGG + chr5_3:49710622-49710641 Msa0815950:CDS 25.0%
! ATATGAACTGAAAAAGCAAT+GGG + chr5_3:49710623-49710642 Msa0815950:CDS 25.0%
!!! CTACATTAGTTTTAATTCTG+GGG - chr5_3:49710787-49710806 None:intergenic 25.0%
!!! CCTACATTAGTTTTAATTCT+GGG - chr5_3:49710788-49710807 None:intergenic 25.0%
!!! TCCTACATTAGTTTTAATTC+TGG - chr5_3:49710789-49710808 None:intergenic 25.0%
!!! ACTATACTTGTTGTAATGTA+AGG + chr5_3:49711152-49711171 Msa0815950:intron 25.0%
GGAAGTAAATGAAAATAGGT+AGG - chr5_3:49704607-49704626 None:intergenic 30.0%
AAACTTAACAGCATCAATAC+AGG - chr5_3:49704806-49704825 None:intergenic 30.0%
AGGAAGATGATTAACTTATG+GGG + chr5_3:49704948-49704967 Msa0815950:intron 30.0%
GACTCATATTCACTGATAAA+TGG + chr5_3:49705054-49705073 Msa0815950:intron 30.0%
! AGATATTTCAAGTGCTATGA+AGG + chr5_3:49705521-49705540 Msa0815950:five_prime_UTR 30.0%
TACTTTCTTTGATCTTCTGA+TGG + chr5_3:49705558-49705577 Msa0815950:exon 30.0%
AACTGTATTCTGTTTATCCT+TGG - chr5_3:49705664-49705683 None:intergenic 30.0%
! ATGATGTTTCTGATTTGACT+CGG + chr5_3:49705878-49705897 Msa0815950:CDS 30.0%
! TGTCTTTCTTCTTATCGTTT+TGG + chr5_3:49706005-49706024 Msa0815950:intron 30.0%
!! ACGATCATTTTTCTCATCTT+CGG - chr5_3:49706117-49706136 None:intergenic 30.0%
! TATAATTAGAATCAGGTTGC+TGG - chr5_3:49706214-49706233 None:intergenic 30.0%
TATGCTAACAGTATTGTTTC+TGG + chr5_3:49706232-49706251 Msa0815950:intron 30.0%
!!! AGAGACAACATTTTTTTTGG+TGG - chr5_3:49706264-49706283 None:intergenic 30.0%
ATTGTTGGAGATATATGAAC+TGG + chr5_3:49706335-49706354 Msa0815950:intron 30.0%
CAATATTATATCCTCATGTG+TGG + chr5_3:49706589-49706608 Msa0815950:intron 30.0%
AACAATTATTTCCACACATG+AGG - chr5_3:49706603-49706622 None:intergenic 30.0%
ACAGAATTTCTCAAACTTGA+TGG + chr5_3:49706693-49706712 Msa0815950:CDS 30.0%
! AATGTAAGTTGACCATGTAA+GGG - chr5_3:49706839-49706858 None:intergenic 30.0%
! AAATGTAAGTTGACCATGTA+AGG - chr5_3:49706840-49706859 None:intergenic 30.0%
ATACAGTAGCAATACGATTA+AGG - chr5_3:49706940-49706959 None:intergenic 30.0%
! GTCTAATGTTTGAAGTGATA+TGG + chr5_3:49707422-49707441 Msa0815950:CDS 30.0%
!! CTGAAAAGGTGTTTATAAGA+GGG + chr5_3:49707446-49707465 Msa0815950:intron 30.0%
AAAACCAATTTACAAGGTGA+GGG - chr5_3:49707478-49707497 None:intergenic 30.0%
AAAAACCAATTTACAAGGTG+AGG - chr5_3:49707479-49707498 None:intergenic 30.0%
CCTACAAAAACCAATTTACA+AGG - chr5_3:49707484-49707503 None:intergenic 30.0%
!!! CCTTGTAAATTGGTTTTTGT+AGG + chr5_3:49707481-49707500 Msa0815950:intron 30.0%
TGAATCATTTGGATGTGATA+TGG + chr5_3:49707635-49707654 Msa0815950:intron 30.0%
TGTACATTATCAGTGTAAAC+AGG - chr5_3:49707825-49707844 None:intergenic 30.0%
! ATTGATGGACACAGATTAAA+AGG + chr5_3:49707876-49707895 Msa0815950:intron 30.0%
!! AATGAGAGATAAGAAGTGTT+TGG + chr5_3:49708067-49708086 Msa0815950:intron 30.0%
!! AAAAGGAGTCTTGTATTTTC+TGG - chr5_3:49708116-49708135 None:intergenic 30.0%
! GACATAACTTTTAAACTGTC+AGG + chr5_3:49708136-49708155 Msa0815950:intron 30.0%
AGTATAAAATATCACCTCCA+AGG - chr5_3:49708222-49708241 None:intergenic 30.0%
ATGTTTCATTCGATGTTTGT+TGG + chr5_3:49708467-49708486 Msa0815950:intron 30.0%
! CTCATAGTGTATTGATAAGA+AGG + chr5_3:49708496-49708515 Msa0815950:intron 30.0%
TAATATTTACTCATTCACCC+GGG + chr5_3:49708622-49708641 Msa0815950:intron 30.0%
AAATATGAAAAACGCAGACA+AGG - chr5_3:49708863-49708882 None:intergenic 30.0%
! AGTCCTATTTTCAGAGATAA+GGG + chr5_3:49708928-49708947 Msa0815950:intron 30.0%
CTCTCAGAAAATAATGTTAG+AGG + chr5_3:49708955-49708974 Msa0815950:CDS 30.0%
TCCTGATTCATACTGAATTA+GGG - chr5_3:49709117-49709136 None:intergenic 30.0%
TTCCTGATTCATACTGAATT+AGG - chr5_3:49709118-49709137 None:intergenic 30.0%
GTCGATCATAAAACTTTATC+AGG - chr5_3:49709263-49709282 None:intergenic 30.0%
TAAACACAGTGTATCTTTGT+TGG + chr5_3:49709384-49709403 Msa0815950:CDS 30.0%
CTGAAAGATCTTAACATCAA+AGG - chr5_3:49709452-49709471 None:intergenic 30.0%
CTTTGATGTTAAGATCTTTC+AGG + chr5_3:49709450-49709469 Msa0815950:intron 30.0%
TAACAAACATCATGGCATAT+AGG - chr5_3:49709504-49709523 None:intergenic 30.0%
GAATAGTACAAACTCATACT+AGG - chr5_3:49709539-49709558 None:intergenic 30.0%
! ATTTTCGTCATTCTTTGACA+AGG + chr5_3:49709570-49709589 Msa0815950:intron 30.0%
! TATTGCATAACTTGGTTTGA+GGG - chr5_3:49709630-49709649 None:intergenic 30.0%
! ATATTGCATAACTTGGTTTG+AGG - chr5_3:49709631-49709650 None:intergenic 30.0%
TAACATTCATAGAGATCACT+TGG + chr5_3:49709731-49709750 Msa0815950:intron 30.0%
! TACTTAAAGAGAGAGTACAA+AGG - chr5_3:49709963-49709982 None:intergenic 30.0%
AATGTGTCAACTTTGCTAAA+GGG - chr5_3:49710535-49710554 None:intergenic 30.0%
AAATGTGTCAACTTTGCTAA+AGG - chr5_3:49710536-49710555 None:intergenic 30.0%
TTTAGCAAAGTTGACACATT+TGG + chr5_3:49710535-49710554 Msa0815950:intron 30.0%
CCCAGAATTAAAACTAATGT+AGG + chr5_3:49710785-49710804 Msa0815950:three_prime_UTR 30.0%
ATTATTAGATGGAGATTGGA+TGG + chr5_3:49710871-49710890 Msa0815950:three_prime_UTR 30.0%
! TGCATTAAATCGGATTTTAG+TGG - chr5_3:49710909-49710928 None:intergenic 30.0%
! ATATGGGTTAATCCTTGAAA+TGG - chr5_3:49711007-49711026 None:intergenic 30.0%
TCACTTTCCAATGATCATAT+GGG - chr5_3:49711023-49711042 None:intergenic 30.0%
AATGCATATAACCAGCATAT+TGG - chr5_3:49711063-49711082 None:intergenic 30.0%
! ATGCATTTTTATGCCAAAGA+GGG - chr5_3:49711241-49711260 None:intergenic 30.0%
! AATGCATTTTTATGCCAAAG+AGG - chr5_3:49711242-49711261 None:intergenic 30.0%
!! ACCATGTGTTGCTTTGAAAT+AGG + chr5_3:49704928-49704947 Msa0815950:intron 35.0%
TCCTATTTCAAAGCAACACA+TGG - chr5_3:49704932-49704951 None:intergenic 35.0%
! AAGAAAGTATGAGATACACC+TGG - chr5_3:49705547-49705566 None:intergenic 35.0%
GTTGCTCTATTAGTCAAGAT+AGG - chr5_3:49705613-49705632 None:intergenic 35.0%
GATCAACCTTATTCAATGAC+TGG + chr5_3:49705740-49705759 Msa0815950:CDS 35.0%
!! CCTTATTCAATGACTGGTTT+CGG + chr5_3:49705746-49705765 Msa0815950:CDS 35.0%
GTCTTGGAGATTAAACTAAC+TGG - chr5_3:49705790-49705809 None:intergenic 35.0%
TCTGTCTCATGTAAATCAAC+AGG + chr5_3:49705814-49705833 Msa0815950:CDS 35.0%
! ACTCGAGCTGACTTAAATAT+TGG + chr5_3:49706481-49706500 Msa0815950:intron 35.0%
ATTTCTTCAGTGGCATAATG+AGG + chr5_3:49706631-49706650 Msa0815950:intron 35.0%
GAGAAATTCTGTCCCTAAAA+AGG - chr5_3:49706685-49706704 None:intergenic 35.0%
! ATGTAAGTTGACCATGTAAG+GGG - chr5_3:49706838-49706857 None:intergenic 35.0%
!! TAGCTTTTTCTTTGACACCA+CGG - chr5_3:49706913-49706932 None:intergenic 35.0%
ACTGTCACATTAATCTGCAA+TGG - chr5_3:49707349-49707368 None:intergenic 35.0%
! CCTCTTATAAACACCTTTTC+AGG - chr5_3:49707448-49707467 None:intergenic 35.0%
!! CCTGAAAAGGTGTTTATAAG+AGG + chr5_3:49707445-49707464 Msa0815950:intron 35.0%
ATATCCCTCACCTTGTAAAT+TGG + chr5_3:49707471-49707490 Msa0815950:intron 35.0%
!! GGTTTTTGTAGGTTTGAGTT+AGG + chr5_3:49707492-49707511 Msa0815950:intron 35.0%
! GCTGAACCTATATTCTAAGA+TGG + chr5_3:49707514-49707533 Msa0815950:intron 35.0%
CACTGTAGTTGTCTAATACT+TGG + chr5_3:49707591-49707610 Msa0815950:intron 35.0%
ACATCCAAATGATTCACTGT+GGG - chr5_3:49707631-49707650 None:intergenic 35.0%
ACCTACAAAACAGGTTTGTA+GGG - chr5_3:49707697-49707716 None:intergenic 35.0%
AACCTACAAAACAGGTTTGT+AGG - chr5_3:49707698-49707717 None:intergenic 35.0%
ACGATATTAGAACTTGGGTT+TGG - chr5_3:49707730-49707749 None:intergenic 35.0%
GTGGTACGATATTAGAACTT+GGG - chr5_3:49707735-49707754 None:intergenic 35.0%
TGTGGTACGATATTAGAACT+TGG - chr5_3:49707736-49707755 None:intergenic 35.0%
! AAAGGATAAACAAGGTGTTC+TGG + chr5_3:49707894-49707913 Msa0815950:intron 35.0%
AGCAACTCTGTAATTAAGTG+TGG - chr5_3:49707995-49708014 None:intergenic 35.0%
CAAAAACATCCATGACATGA+TGG + chr5_3:49708375-49708394 Msa0815950:CDS 35.0%
TAAATACTACGGTCCAGTTT+GGG - chr5_3:49708711-49708730 None:intergenic 35.0%
TTAAATACTACGGTCCAGTT+TGG - chr5_3:49708712-49708731 None:intergenic 35.0%
CATTGTCAGAAAAGCAAACT+CGG - chr5_3:49708899-49708918 None:intergenic 35.0%
!! TTGCTTTTCTGACAATGTTG+TGG + chr5_3:49708902-49708921 Msa0815950:intron 35.0%
! CAGTCCTATTTTCAGAGATA+AGG + chr5_3:49708927-49708946 Msa0815950:intron 35.0%
! GATCCCTTATCTCTGAAAAT+AGG - chr5_3:49708934-49708953 None:intergenic 35.0%
CGAATCATGCTTGAAAAGAA+TGG + chr5_3:49708979-49708998 Msa0815950:CDS 35.0%
AGAACCACAAATTCCTTTCT+TGG + chr5_3:49709003-49709022 Msa0815950:CDS 35.0%
GAACCACAAATTCCTTTCTT+GGG + chr5_3:49709004-49709023 Msa0815950:CDS 35.0%
AACCACAAATTCCTTTCTTG+GGG + chr5_3:49709005-49709024 Msa0815950:CDS 35.0%
CCTGATTCATACTGAATTAG+GGG - chr5_3:49709116-49709135 None:intergenic 35.0%
AGTATCTATAGGAAGCTTAC+TGG + chr5_3:49709167-49709186 Msa0815950:intron 35.0%
TCTTATAGACCTTGATGCAA+TGG + chr5_3:49709357-49709376 Msa0815950:CDS 35.0%
GTCAAAACATTCTCAATTGC+AGG + chr5_3:49709592-49709611 Msa0815950:intron 35.0%
TGAGATGATAATATGCTAGG+TGG - chr5_3:49709909-49709928 None:intergenic 35.0%
CGCTAGCCATTTCAATTATA+AGG - chr5_3:49710007-49710026 None:intergenic 35.0%
TGGACAAGGAAAATAAGCAA+AGG - chr5_3:49710049-49710068 None:intergenic 35.0%
!! ACATTTGGTTCTTGTTGTAG+AGG + chr5_3:49710550-49710569 Msa0815950:intron 35.0%
AAGCAATGGGAAATAGAAGA+AGG + chr5_3:49710636-49710655 Msa0815950:CDS 35.0%
AGCAATGGGAAATAGAAGAA+GGG + chr5_3:49710637-49710656 Msa0815950:CDS 35.0%
AAATAGAAGAAGGGGATAGT+TGG + chr5_3:49710646-49710665 Msa0815950:CDS 35.0%
!!! CATTAGTTTTAATTCTGGGG+AGG - chr5_3:49710784-49710803 None:intergenic 35.0%
! GGTAAACGTCGATTATTAGA+TGG + chr5_3:49710860-49710879 Msa0815950:three_prime_UTR 35.0%
GTCGATTATTAGATGGAGAT+TGG + chr5_3:49710867-49710886 Msa0815950:three_prime_UTR 35.0%
GGATTAACCCATATGATCAT+TGG + chr5_3:49711013-49711032 Msa0815950:three_prime_UTR 35.0%
! GTCACTTTCCAATGATCATA+TGG - chr5_3:49711024-49711043 None:intergenic 35.0%
AAACAACCCAGATAAAAGCA+TGG - chr5_3:49711204-49711223 None:intergenic 35.0%
TAACTATGCCTTTGTTCCAC+AGG + chr5_3:49704644-49704663 Msa0815950:five_prime_UTR 40.0%
AAAACTGACCTGTGGAACAA+AGG - chr5_3:49704655-49704674 None:intergenic 40.0%
GAAAGCTAAAAACTGACCTG+TGG - chr5_3:49704663-49704682 None:intergenic 40.0%
TAAATGGATAGACGCTAGAG+CGG + chr5_3:49705070-49705089 Msa0815950:intron 40.0%
! CTTTGGCTCATTCGTATGTT+GGG + chr5_3:49705142-49705161 Msa0815950:intron 40.0%
TGATCTTCTGATGGCACTTA+CGG + chr5_3:49705567-49705586 Msa0815950:exon 40.0%
ACGGCAAACAAAGTTTCAAG+CGG + chr5_3:49705586-49705605 Msa0815950:CDS 40.0%
GCAACACTTTGTAGATCACA+TGG + chr5_3:49705628-49705647 Msa0815950:CDS 40.0%
TCAAGGGTTAGACTCGAAAA+TGG + chr5_3:49705685-49705704 Msa0815950:CDS 40.0%
CCGAAACCAGTCATTGAATA+AGG - chr5_3:49705749-49705768 None:intergenic 40.0%
ACATGAGACAGAAGATGTCT+TGG - chr5_3:49705806-49705825 None:intergenic 40.0%
TGTCTCCTGTACATGTGAAA+GGG - chr5_3:49706092-49706111 None:intergenic 40.0%
ATGTCTCCTGTACATGTGAA+AGG - chr5_3:49706093-49706112 None:intergenic 40.0%
GAGAAACTTTGCATCGTTAC+AGG - chr5_3:49706180-49706199 None:intergenic 40.0%
ACGATGCAAAGTTTCTCTCA+CGG + chr5_3:49706183-49706202 Msa0815950:CDS 40.0%
! GCCAAGATGTTGCCTTTTTA+GGG + chr5_3:49706670-49706689 Msa0815950:CDS 40.0%
TCCCTAAAAAGGCAACATCT+TGG - chr5_3:49706674-49706693 None:intergenic 40.0%
TACACTACATTCCCCTTACA+TGG + chr5_3:49706824-49706843 Msa0815950:intron 40.0%
ATATCCACTGCAGATCTTGA+AGG + chr5_3:49707047-49707066 Msa0815950:intron 40.0%
ATATCCTTCAAGATCTGCAG+TGG - chr5_3:49707054-49707073 None:intergenic 40.0%
TGCAATGGAGGAGAAAAACT+AGG - chr5_3:49707334-49707353 None:intergenic 40.0%
GTCACATTAATCTGCAATGG+AGG - chr5_3:49707346-49707365 None:intergenic 40.0%
TGAAGTGATATGGCCTGAAA+AGG + chr5_3:49707432-49707451 Msa0815950:CDS 40.0%
CACATCCAAATGATTCACTG+TGG - chr5_3:49707632-49707651 None:intergenic 40.0%
! ACCCTACAAACCTGTTTTGT+AGG + chr5_3:49707693-49707712 Msa0815950:intron 40.0%
CCAACTCAAACCTACAAAAC+AGG - chr5_3:49707706-49707725 None:intergenic 40.0%
! CCTGTTTTGTAGGTTTGAGT+TGG + chr5_3:49707703-49707722 Msa0815950:intron 40.0%
TATCACCTCCAAGGACATAA+GGG - chr5_3:49708213-49708232 None:intergenic 40.0%
ATATCACCTCCAAGGACATA+AGG - chr5_3:49708214-49708233 None:intergenic 40.0%
TACTTCGCATGTGTTCACTT+AGG + chr5_3:49708238-49708257 Msa0815950:intron 40.0%
TAGGAACCATGTGTTCACTT+AGG + chr5_3:49708257-49708276 Msa0815950:intron 40.0%
AAGGTTCCTAAGTGAACACA+TGG - chr5_3:49708266-49708285 None:intergenic 40.0%
AAATACTACGGTCCAGTTTG+GGG - chr5_3:49708710-49708729 None:intergenic 40.0%
TTCCGAGATGTAGACACAAT+TGG + chr5_3:49708803-49708822 Msa0815950:intron 40.0%
AGCCAATTGTGTCTACATCT+CGG - chr5_3:49708808-49708827 None:intergenic 40.0%
TGAAAAACGCAGACAAGGAA+AGG - chr5_3:49708858-49708877 None:intergenic 40.0%
ATCCCCAAGAAAGGAATTTG+TGG - chr5_3:49709010-49709029 None:intergenic 40.0%
CCCCTAATTCAGTATGAATC+AGG + chr5_3:49709113-49709132 Msa0815950:intron 40.0%
ATAGGAAGCTTACTGGAGTA+TGG + chr5_3:49709174-49709193 Msa0815950:intron 40.0%
TGATTACACTGATCCTGAAG+AGG + chr5_3:49709225-49709244 Msa0815950:CDS 40.0%
GAAGCTAAACTAACCTCTTC+AGG - chr5_3:49709241-49709260 None:intergenic 40.0%
ATAGACCTTGATGCAATGGA+CGG + chr5_3:49709361-49709380 Msa0815950:CDS 40.0%
AACATCAAAGGAACCTTACC+TGG - chr5_3:49709440-49709459 None:intergenic 40.0%
ATCATGGCATATAGGTGCAT+TGG - chr5_3:49709496-49709515 None:intergenic 40.0%
! ACACTTGCTCTTTATTTGGC+AGG - chr5_3:49709764-49709783 None:intergenic 40.0%
GAAGTTTACATGCATGGACA+AGG - chr5_3:49710063-49710082 None:intergenic 40.0%
CGTCTAGAAGTTTACATGCA+TGG - chr5_3:49710069-49710088 None:intergenic 40.0%
TTTCCAAGAGTCCACATAGA+TGG - chr5_3:49710120-49710139 None:intergenic 40.0%
GCAATGGGAAATAGAAGAAG+GGG + chr5_3:49710638-49710657 Msa0815950:CDS 40.0%
GGATAGTTGGAGGTTTATGA+TGG + chr5_3:49710659-49710678 Msa0815950:CDS 40.0%
!! TATGATGGATGAAAGCAGCA+AGG + chr5_3:49710674-49710693 Msa0815950:CDS 40.0%
! TAGGATTAACGGATCCAGAT+TGG + chr5_3:49710804-49710823 Msa0815950:three_prime_UTR 40.0%
AATCCTGCAGTCACTATAGT+TGG + chr5_3:49710839-49710858 Msa0815950:three_prime_UTR 40.0%
TTACCAACTATAGTGACTGC+AGG - chr5_3:49710845-49710864 None:intergenic 40.0%
TAGTCATCTCAGTCGTACAA+TGG - chr5_3:49710957-49710976 None:intergenic 40.0%
CTTGTAAGATGCCAATATGC+TGG + chr5_3:49711049-49711068 Msa0815950:three_prime_UTR 40.0%
GGCTGTTGAGCAAATTATGT+AGG - chr5_3:49711183-49711202 None:intergenic 40.0%
! TCAACAGCCATGCTTTTATC+TGG + chr5_3:49711194-49711213 Msa0815950:three_prime_UTR 40.0%
! CAACAGCCATGCTTTTATCT+GGG + chr5_3:49711195-49711214 Msa0815950:three_prime_UTR 40.0%
TTTATGCCAAAGAGGGCAAA+AGG - chr5_3:49711234-49711253 None:intergenic 40.0%
AAATGGATAGACGCTAGAGC+GGG + chr5_3:49705071-49705090 Msa0815950:intron 45.0%
TACGAATGAGCCAAAGCCAA+AGG - chr5_3:49705138-49705157 None:intergenic 45.0%
! GCTTTGGCTCATTCGTATGT+TGG + chr5_3:49705141-49705160 Msa0815950:intron 45.0%
TATGTTGGGTTACGACGACT+AGG + chr5_3:49705156-49705175 Msa0815950:intron 45.0%
! TGCTCTGCTGTCTAAGACAT+CGG + chr5_3:49705278-49705297 Msa0815950:intron 45.0%
! TTTCAAGTGCTATGAAGGCC+AGG + chr5_3:49705526-49705545 Msa0815950:five_prime_UTR 45.0%
CACATGGATCTTCATCACCA+AGG + chr5_3:49705644-49705663 Msa0815950:CDS 45.0%
!! GACTGGTTTCGGTTCATCAA+TGG + chr5_3:49705757-49705776 Msa0815950:CDS 45.0%
AGAGACCCTTTCACATGTAC+AGG + chr5_3:49706084-49706103 Msa0815950:intron 45.0%
GATCGTATTCGTTCTGTTCG+TGG + chr5_3:49706131-49706150 Msa0815950:CDS 45.0%
CTTCAGTGGCATAATGAGGA+TGG + chr5_3:49706635-49706654 Msa0815950:intron 45.0%
! CGCCAAGATGTTGCCTTTTT+AGG + chr5_3:49706669-49706688 Msa0815950:CDS 45.0%
CTCTACTATGCTGCATAGCT+CGG + chr5_3:49706861-49706880 Msa0815950:intron 45.0%
TCTACTATGCTGCATAGCTC+GGG + chr5_3:49706862-49706881 Msa0815950:intron 45.0%
GATACTGAGAAAATCGACCG+TGG + chr5_3:49706893-49706912 Msa0815950:CDS 45.0%
! ATCGGCAGCACTTTTCAATC+TGG - chr5_3:49707085-49707104 None:intergenic 45.0%
! ATCCGTGAGCCACTCATTTT+CGG + chr5_3:49707555-49707574 Msa0815950:intron 45.0%
GAGTCCCACAGTGAATCATT+TGG + chr5_3:49707624-49707643 Msa0815950:intron 45.0%
! AGGTGTTCTGGTAATGAGCA+TGG + chr5_3:49707906-49707925 Msa0815950:intron 45.0%
! GGTGTTCTGGTAATGAGCAT+GGG + chr5_3:49707907-49707926 Msa0815950:intron 45.0%
! TTCTGGTAATGAGCATGGGT+TGG + chr5_3:49707911-49707930 Msa0815950:intron 45.0%
GTGTGGCATGACATCTTGTT+GGG + chr5_3:49707949-49707968 Msa0815950:intron 45.0%
TCTTGCTCACCATCATGTCA+TGG - chr5_3:49708387-49708406 None:intergenic 45.0%
! GTATTGATAAGAAGGCTGCG+TGG + chr5_3:49708504-49708523 Msa0815950:intron 45.0%
GAGGTCTTGAATTCAAACCC+GGG - chr5_3:49708642-49708661 None:intergenic 45.0%
GGAGGTCTTGAATTCAAACC+CGG - chr5_3:49708643-49708662 None:intergenic 45.0%
AATACTACGGTCCAGTTTGG+GGG - chr5_3:49708709-49708728 None:intergenic 45.0%
CTACATCTCGGAATTCAGAG+CGG - chr5_3:49708796-49708815 None:intergenic 45.0%
TTCCTTTCTTGGGGATGTGA+CGG + chr5_3:49709014-49709033 Msa0815950:CDS 45.0%
!! AGAACGGATTACTGCTCTTC+AGG + chr5_3:49709038-49709057 Msa0815950:CDS 45.0%
!! TCTGCACTTTCTGAAGCAGA+TGG + chr5_3:49709199-49709218 Msa0815950:CDS 45.0%
GTTTACCGTCCATTGCATCA+AGG - chr5_3:49709369-49709388 None:intergenic 45.0%
!! TGTTCTAGTTCCCCTGATGT+CGG + chr5_3:49709412-49709431 Msa0815950:CDS 45.0%
! TTCTAGACGAGCTTTAGCGA+AGG + chr5_3:49710080-49710099 Msa0815950:intron 45.0%
! TTGGTTCTTGTTGTAGAGGC+TGG + chr5_3:49710554-49710573 Msa0815950:intron 45.0%
AATGGCTGGATTGCTATCCT+CGG - chr5_3:49710580-49710599 None:intergenic 45.0%
TAGAAGAAGGGGATAGTTGG+AGG + chr5_3:49710649-49710668 Msa0815950:CDS 45.0%
!! TTAATTCTGGGGAGGCATTC+AGG - chr5_3:49710776-49710795 None:intergenic 45.0%
! TTTTGTGACTGCGACCAATC+TGG - chr5_3:49710821-49710840 None:intergenic 45.0%
GTCGTACAATGGAGATTGGA+TGG - chr5_3:49710946-49710965 None:intergenic 45.0%
CTCAGTCGTACAATGGAGAT+TGG - chr5_3:49710950-49710969 None:intergenic 45.0%
ACTGCATGCAGTCCATTTCA+AGG + chr5_3:49710992-49711011 Msa0815950:three_prime_UTR 45.0%
! GACTTTCCTTTTGCCCTCTT+TGG + chr5_3:49711225-49711244 Msa0815950:three_prime_UTR 45.0%
AATGGATAGACGCTAGAGCG+GGG + chr5_3:49705072-49705091 Msa0815950:intron 50.0%
TGAGCCAAAGCCAAAGGAGT+AGG - chr5_3:49705132-49705151 None:intergenic 50.0%
TTGGGTTACGACGACTAGGA+GGG + chr5_3:49705160-49705179 Msa0815950:intron 50.0%
TTACGACGACTAGGAGGGTT+GGG + chr5_3:49705165-49705184 Msa0815950:intron 50.0%
! GTCTAAGACATCGGCACAGT+TGG + chr5_3:49705287-49705306 Msa0815950:intron 50.0%
GTGGCTCACGGATCTTTGAT+AGG - chr5_3:49707548-49707567 None:intergenic 50.0%
GTCCGAAAATGAGTGGCTCA+CGG - chr5_3:49707560-49707579 None:intergenic 50.0%
! CCACTCATTTTCGGACCACT+CGG + chr5_3:49707564-49707583 Msa0815950:intron 50.0%
! CACTCATTTTCGGACCACTC+GGG + chr5_3:49707565-49707584 Msa0815950:intron 50.0%
!! TGGGTTGGTGTTGTCACACA+TGG + chr5_3:49707926-49707945 Msa0815950:intron 50.0%
!! GGGTTGGTGTTGTCACACAT+GGG + chr5_3:49707927-49707946 Msa0815950:intron 50.0%
GGTGTGGCATGACATCTTGT+TGG + chr5_3:49707948-49707967 Msa0815950:intron 50.0%
ATCTTCCATGGCACGTTGCT+TGG - chr5_3:49708189-49708208 None:intergenic 50.0%
!! GGACATAAGGGCATCTTCCA+TGG - chr5_3:49708201-49708220 None:intergenic 50.0%
GGAAGATGCCCTTATGTCCT+TGG + chr5_3:49708202-49708221 Msa0815950:CDS 50.0%
AGATGCCCTTATGTCCTTGG+AGG + chr5_3:49708205-49708224 Msa0815950:CDS 50.0%
TTGATAAGAAGGCTGCGTGG+AGG + chr5_3:49708507-49708526 Msa0815950:intron 50.0%
TGATAAGAAGGCTGCGTGGA+GGG + chr5_3:49708508-49708527 Msa0815950:intron 50.0%
ATTACCCCTGGACCATACCA+CGG - chr5_3:49708542-49708561 None:intergenic 50.0%
CCTCCAACTCCTTTAACCCT+CGG + chr5_3:49708658-49708677 Msa0815950:intron 50.0%
TGGTTTGAGCCGAGGGTTAA+AGG - chr5_3:49708670-49708689 None:intergenic 50.0%
!! ACTCAACTGGTTTGAGCCGA+GGG - chr5_3:49708677-49708696 None:intergenic 50.0%
!! AACTCAACTGGTTTGAGCCG+AGG - chr5_3:49708678-49708697 None:intergenic 50.0%
ATACTACGGTCCAGTTTGGG+GGG - chr5_3:49708708-49708727 None:intergenic 50.0%
!! TTACCTGGTACCGACATCAG+GGG - chr5_3:49709425-49709444 None:intergenic 50.0%
!! CTTACCTGGTACCGACATCA+GGG - chr5_3:49709426-49709445 None:intergenic 50.0%
GCACCATCTATGTGGACTCT+TGG + chr5_3:49710114-49710133 Msa0815950:CDS 50.0%
ATGTGGACTCTTGGAAACGC+AGG + chr5_3:49710123-49710142 Msa0815950:CDS 50.0%
TGTGGACTCTTGGAAACGCA+GGG + chr5_3:49710124-49710143 Msa0815950:CDS 50.0%
ACTCTTGGAAACGCAGGGAT+GGG + chr5_3:49710129-49710148 Msa0815950:CDS 50.0%
TTTGGATGCTGCAGCTGCAA+TGG - chr5_3:49710598-49710617 None:intergenic 50.0%
! AGCGCCTACTCCTTTGGCTT+TGG + chr5_3:49705125-49705144 Msa0815950:intron 55.0%
GTTGGGTTACGACGACTAGG+AGG + chr5_3:49705159-49705178 Msa0815950:intron 55.0%
GTTACGACGACTAGGAGGGT+TGG + chr5_3:49705164-49705183 Msa0815950:intron 55.0%
TACGACGACTAGGAGGGTTG+GGG + chr5_3:49705166-49705185 Msa0815950:intron 55.0%
CTGCATAGCTCGGGCAAGAA+AGG + chr5_3:49706871-49706890 Msa0815950:intron 55.0%
!! AAAGTGCTGCCGATGAGCAC+TGG + chr5_3:49707091-49707110 Msa0815950:CDS 55.0%
CCGAGTGGTCCGAAAATGAG+TGG - chr5_3:49707567-49707586 None:intergenic 55.0%
CAACTACAGTGTGACCCGAG+TGG - chr5_3:49707582-49707601 None:intergenic 55.0%
! GGTGTTGTCACACATGGGTG+TGG + chr5_3:49707932-49707951 Msa0815950:intron 55.0%
ACGTTGCTTGGCACGGAAGT+CGG - chr5_3:49708177-49708196 None:intergenic 55.0%
TTACCCCTGGACCATACCAC+GGG - chr5_3:49708541-49708560 None:intergenic 55.0%
CCGAGGGTTAAAGGAGTTGG+AGG - chr5_3:49708661-49708680 None:intergenic 55.0%
GAGCCGAGGGTTAAAGGAGT+TGG - chr5_3:49708664-49708683 None:intergenic 55.0%
TACTACGGTCCAGTTTGGGG+GGG - chr5_3:49708707-49708726 None:intergenic 55.0%
TGCCGTCACATCCCCAAGAA+AGG - chr5_3:49709019-49709038 None:intergenic 55.0%
TTGGGGATGTGACGGCAGAA+CGG + chr5_3:49709022-49709041 Msa0815950:CDS 55.0%
!! CCTTACCTGGTACCGACATC+AGG - chr5_3:49709427-49709446 None:intergenic 55.0%
CCTGATGTCGGTACCAGGTA+AGG + chr5_3:49709424-49709443 Msa0815950:intron 55.0%
! ACGAGCTTTAGCGAAGGCAC+TGG + chr5_3:49710086-49710105 Msa0815950:CDS 55.0%
TGGCAGCAGCACCATCTATG+TGG + chr5_3:49710106-49710125 Msa0815950:CDS 55.0%
GACTCTTGGAAACGCAGGGA+TGG + chr5_3:49710128-49710147 Msa0815950:CDS 55.0%
CTCTTGGAAACGCAGGGATG+GGG + chr5_3:49710130-49710149 Msa0815950:CDS 55.0%
TCTTGGAAACGCAGGGATGG+GGG + chr5_3:49710131-49710150 Msa0815950:CDS 55.0%
AAGGAGTAGGCGCTCTCGCA+CGG - chr5_3:49705119-49705138 None:intergenic 60.0%
!! TGCGAGAGCGCCTACTCCTT+TGG + chr5_3:49705119-49705138 Msa0815950:intron 60.0%
!! GCCGATGAGCACTGGAGTGA+CGG + chr5_3:49707099-49707118 Msa0815950:CDS 60.0%
CCCGTCACTCCAGTGCTCAT+CGG - chr5_3:49707103-49707122 None:intergenic 60.0%
!! CCGATGAGCACTGGAGTGAC+GGG + chr5_3:49707100-49707119 Msa0815950:CDS 60.0%
!! CGATGAGCACTGGAGTGACG+GGG + chr5_3:49707101-49707120 Msa0815950:CDS 60.0%
CCATGGCACGTTGCTTGGCA+CGG - chr5_3:49708184-49708203 None:intergenic 60.0%
TACCCCTGGACCATACCACG+GGG - chr5_3:49708540-49708559 None:intergenic 60.0%
GGGGGGTTGGGTAACTCAAC+TGG - chr5_3:49708690-49708709 None:intergenic 60.0%
GTTACCCAACCCCCCCAAAC+TGG + chr5_3:49708695-49708714 Msa0815950:intron 60.0%
GTTCCCCTGATGTCGGTACC+AGG + chr5_3:49709419-49709438 Msa0815950:CDS 60.0%
! CTTGTTGTAGAGGCTGGCCG+AGG + chr5_3:49710560-49710579 Msa0815950:intron 60.0%
GATGCTGCAGCTGCAATGGC+TGG - chr5_3:49710594-49710613 None:intergenic 60.0%
! CTGGAGTGACGGGGCCTTAG+AGG + chr5_3:49707110-49707129 Msa0815950:CDS 65.0%
GCTTGGCACGGAAGTCGGCA+AGG - chr5_3:49708172-49708191 None:intergenic 65.0%
CCGTGCCAAGCAACGTGCCA+TGG + chr5_3:49708181-49708200 Msa0815950:CDS 65.0%
AGGGTGAAGCCCCCGTGGTA+TGG + chr5_3:49708527-49708546 Msa0815950:intron 65.0%
AAGCCCCCGTGGTATGGTCC+AGG + chr5_3:49708533-49708552 Msa0815950:intron 65.0%
AGCCCCCGTGGTATGGTCCA+GGG + chr5_3:49708534-49708553 Msa0815950:intron 65.0%
ACCCCTGGACCATACCACGG+GGG - chr5_3:49708539-49708558 None:intergenic 65.0%
CGGTCCAGTTTGGGGGGGTT+GGG - chr5_3:49708702-49708721 None:intergenic 65.0%
ACGGTCCAGTTTGGGGGGGT+TGG - chr5_3:49708703-49708722 None:intergenic 65.0%
!! CGCAGGGATGGGGGCATTAC+AGG + chr5_3:49710140-49710159 Msa0815950:CDS 65.0%
GCCCCCGTGGTATGGTCCAG+GGG + chr5_3:49708535-49708554 Msa0815950:intron 70.0%
CGTGGAGGGTGAAGCCCCCG+TGG + chr5_3:49708522-49708541 Msa0815950:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 49704566 49711277 49704566 ID=Msa0815950;Name=Msa0815950
chr5_3 mRNA 49704566 49711277 49704566 ID=Msa0815950-mRNA-1;Parent=Msa0815950;Name=Msa0815950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=161|0.86|0.93|0.93|0.8|0.68|16|497|460
chr5_3 exon 49704566 49704665 49704566 ID=Msa0815950-mRNA-1:exon:14960;Parent=Msa0815950-mRNA-1
chr5_3 exon 49705516 49705899 49705516 ID=Msa0815950-mRNA-1:exon:14961;Parent=Msa0815950-mRNA-1
chr5_3 exon 49706106 49706204 49706106 ID=Msa0815950-mRNA-1:exon:14962;Parent=Msa0815950-mRNA-1
chr5_3 exon 49706641 49706714 49706641 ID=Msa0815950-mRNA-1:exon:14963;Parent=Msa0815950-mRNA-1
chr5_3 exon 49706879 49706955 49706879 ID=Msa0815950-mRNA-1:exon:14964;Parent=Msa0815950-mRNA-1
chr5_3 exon 49707060 49707131 49707060 ID=Msa0815950-mRNA-1:exon:14965;Parent=Msa0815950-mRNA-1
chr5_3 exon 49707355 49707453 49707355 ID=Msa0815950-mRNA-1:exon:14966;Parent=Msa0815950-mRNA-1
chr5_3 exon 49708158 49708226 49708158 ID=Msa0815950-mRNA-1:exon:14967;Parent=Msa0815950-mRNA-1
chr5_3 exon 49708370 49708416 49708370 ID=Msa0815950-mRNA-1:exon:14968;Parent=Msa0815950-mRNA-1
chr5_3 exon 49708930 49709059 49708930 ID=Msa0815950-mRNA-1:exon:14969;Parent=Msa0815950-mRNA-1
chr5_3 exon 49709178 49709246 49709178 ID=Msa0815950-mRNA-1:exon:14970;Parent=Msa0815950-mRNA-1
chr5_3 exon 49709337 49709440 49709337 ID=Msa0815950-mRNA-1:exon:14971;Parent=Msa0815950-mRNA-1
chr5_3 exon 49710086 49710161 49710086 ID=Msa0815950-mRNA-1:exon:14972;Parent=Msa0815950-mRNA-1
chr5_3 exon 49710570 49710913 49710570 ID=Msa0815950-mRNA-1:exon:14973;Parent=Msa0815950-mRNA-1
chr5_3 exon 49710951 49711130 49710951 ID=Msa0815950-mRNA-1:exon:14974;Parent=Msa0815950-mRNA-1
chr5_3 exon 49711161 49711277 49711161 ID=Msa0815950-mRNA-1:exon:14975;Parent=Msa0815950-mRNA-1
chr5_3 five_prime_UTR 49704566 49704665 49704566 ID=Msa0815950-mRNA-1:five_prime_utr;Parent=Msa0815950-mRNA-1
chr5_3 five_prime_UTR 49705516 49705576 49705516 ID=Msa0815950-mRNA-1:five_prime_utr;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49705577 49705899 49705577 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49706106 49706204 49706106 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49706641 49706714 49706641 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49706879 49706955 49706879 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49707060 49707131 49707060 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49707355 49707453 49707355 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49708158 49708226 49708158 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49708370 49708416 49708370 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49708930 49709059 49708930 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49709178 49709246 49709178 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49709337 49709440 49709337 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49710086 49710161 49710086 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 CDS 49710570 49710713 49710570 ID=Msa0815950-mRNA-1:cds;Parent=Msa0815950-mRNA-1
chr5_3 three_prime_UTR 49710714 49710913 49710714 ID=Msa0815950-mRNA-1:three_prime_utr;Parent=Msa0815950-mRNA-1
chr5_3 three_prime_UTR 49710951 49711130 49710951 ID=Msa0815950-mRNA-1:three_prime_utr;Parent=Msa0815950-mRNA-1
chr5_3 three_prime_UTR 49711161 49711277 49711161 ID=Msa0815950-mRNA-1:three_prime_utr;Parent=Msa0815950-mRNA-1
Gene Sequence

>Msa0815950

ATGGCACTTACGGCAAACAAAGTTTCAAGCGGTCCTATCTTGACTAATAGAGCAACACTTTGTAGATCACATGGATCTTCATCACCAAGGATAAACAGAATACAGTTTTCAAGGGTTAGACTCGAAAATGGACATTTGAACAACGATTCTGTTCTCAATGAGAGATCAACCTTATTCAATGACTGGTTTCGGTTCATCAATGGAAGAAATCCAGTTAGTTTAATCTCCAAGACATCTTCTGTCTCATGTAAATCAACAGGAGCAAATAATACTGAAGAAAAAGAATGTGTTACAACTTATGATGATGTTTCTGATTTGACTCGGAGACATGCCGAAGATGAGAAAAATGATCGTATTCGTTCTGTTCGTGGCTTGTCTGAAGCTTATAGATTTGCCTGTAACGATGCAAAGTTTCTCTCACGTGGCATAATGAGGATGGATGAGCGTGCGCGCCAAGATGTTGCCTTTTTAGGGACAGAATTTCTCAAACTTGATGCTCGGGCAAGAAAGGATACTGAGAAAATCGACCGTGGTGTCAAAGAAAAAGCTAAGCGCCTTAATCGTATTGCTACTATCTTGAAGGATATCGCTCAGACCAGATTGAAAAGTGCTGCCGATGAGCACTGGAGTGACGGGGCCTTAGAGATTAATGTGACAGTGAAAATAGATTTTATACAGGCGTACAATCACACTTATCTATCTTATGTTGAGAGTCTAATGTTTGAAGTGATATGGCCTGAAAAGGCTGATTTGCGCCTTGCCGACTTCCGTGCCAAGCAACGTGCCATGGAAGATGCCCTTATGTCCTTGGAGCTGATCAAAAACATCCATGACATGATGGTGAGCAAGACTTATAACTTTCCTATTTTCAGAGATAAGGGATCTCTCTCAGAAAATAATGTTAGAGGTCGAATCATGCTTGAAAAGAATGGAAGAACCACAAATTCCTTTCTTGGGGATGTGACGGCAGAACGGATTACTGCTCTTCAGGAAGCTTACTGGAGTATGGCATCTGCACTTTCTGAAGCAGATGGAATTGATTACACTGATCCTGAAGAGCTTGAATTGTTAATCACAACTCTTATAGACCTTGATGCAATGGACGGTAAACACAGTGTATCTTTGTTGGCAGAGTGTTCTAGTTCCCCTGATGTCGGTACCAGACGAGCTTTAGCGAAGGCACTGGCAGCAGCACCATCTATGTGGACTCTTGGAAACGCAGGGATGGGGGCATTACAGAGGCTGGCCGAGGATAGCAATCCAGCCATTGCAGCTGCAGCATCCAAAGCTATATATGAACTGAAAAAGCAATGGGAAATAGAAGAAGGGGATAGTTGGAGGTTTATGATGGATGAAAGCAGCAAGGAAGAAAATGAAACCTGA

Protein sequence

>Msa0815950

MALTANKVSSGPILTNRATLCRSHGSSSPRINRIQFSRVRLENGHLNNDSVLNERSTLFNDWFRFINGRNPVSLISKTSSVSCKSTGANNTEEKECVTTYDDVSDLTRRHAEDEKNDRIRSVRGLSEAYRFACNDAKFLSRGIMRMDERARQDVAFLGTEFLKLDARARKDTEKIDRGVKEKAKRLNRIATILKDIAQTRLKSAADEHWSDGALEINVTVKIDFIQAYNHTYLSYVESLMFEVIWPEKADLRLADFRAKQRAMEDALMSLELIKNIHDMMVSKTYNFPIFRDKGSLSENNVRGRIMLEKNGRTTNSFLGDVTAERITALQEAYWSMASALSEADGIDYTDPEELELLITTLIDLDAMDGKHSVSLLAECSSSPDVGTRRALAKALAAAPSMWTLGNAGMGALQRLAEDSNPAIAAAASKAIYELKKQWEIEEGDSWRFMMDESSKEENET*