AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1212960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1212960 MtrunA17_Chr4g0061431 95.217 230 11 0 1 230 1 230 3.84e-165 454
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 61 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGGGAGGTTGGAATATT+TGG 0.159434 8_1:-72990837 Msa1212970:three_prime_UTR
CCTTGCTGTGATTCTGAAAA+AGG 0.193262 8_1:-72991003 Msa1212970:three_prime_UTR
GTGGGTTGGTTTGTAAATTA+AGG 0.194932 8_1:-72990779 Msa1212970:three_prime_UTR
TTTGGAATTGGTTTGTATAT+TGG 0.217078 8_1:+72991155 Msa1212960:CDS
GGAATGGAGAAATCAATATT+TGG 0.260276 8_1:+72991137 Msa1212960:CDS
TCTTGATGATTCTAGTATTT+CGG 0.269601 8_1:-72990943 Msa1212970:three_prime_UTR
ATCTAACTCACATGCTTGTC+TGG 0.291025 8_1:+72992537 Msa1212960:CDS
TTCTGATCTTTACCATTCTA+AGG 0.302171 8_1:+72991244 Msa1212960:CDS
TGGTTTGTAAATTAAGGTTC+TGG 0.319123 8_1:-72990773 Msa1212970:three_prime_UTR
AAGGTTCTGGCTTAGCTTCA+TGG 0.326775 8_1:-72990760 Msa1212970:three_prime_UTR
GAGAAATCAATATTTGGAAT+TGG 0.332954 8_1:+72991143 Msa1212960:CDS
TCTGGTTTGGATTGGTGGGT+TGG 0.337391 8_1:-72990793 Msa1212970:three_prime_UTR
GAAGGGGAGGTAGGGAGAGA+TGG 0.340377 8_1:-72990854 Msa1212970:three_prime_UTR
TTGAAGAACTTATGATAAAA+TGG 0.367734 8_1:+72992591 Msa1212960:CDS
AAGGGGAGGTAGGGAGAGAT+GGG 0.392672 8_1:-72990853 Msa1212970:three_prime_UTR
AAGAGGGAGATGATGAAGTC+TGG 0.398949 8_1:-72990811 Msa1212970:three_prime_UTR
GGAGATGATGAAGTCTGGTT+TGG 0.401750 8_1:-72990806 Msa1212970:three_prime_UTR
GGTAGGGAGAGATGGGAGGT+TGG 0.408763 8_1:-72990846 Msa1212970:three_prime_UTR
TGAAGTCTGGTTTGGATTGG+TGG 0.432119 8_1:-72990798 Msa1212970:three_prime_UTR
AAGTGACTGGTTCATCTGTT+GGG 0.435909 8_1:+72992513 Msa1212960:CDS
GGGAGGTAGGGAGAGATGGG+AGG 0.445867 8_1:-72990850 Msa1212970:three_prime_UTR
TATCATAAGTTCTTCAACAC+TGG 0.457160 8_1:-72992585 Msa1212970:three_prime_UTR
CTGGCTTAGCTTCATGGTGG+AGG 0.465525 8_1:-72990754 None:intergenic
GAAGTCTGGTTTGGATTGGT+GGG 0.474714 8_1:-72990797 Msa1212970:three_prime_UTR
GTTGGAATATTTGGTGAAAG+AGG 0.477675 8_1:-72990828 Msa1212970:three_prime_UTR
TTGGAATATTTGGTGAAAGA+GGG 0.484949 8_1:-72990827 Msa1212970:three_prime_UTR
AAGAGGTAATATTCTTCACT+TGG 0.488829 8_1:+72991085 Msa1212960:CDS
GCTTGGAAAAGCCGAGGGAT+TGG 0.488915 8_1:+72991046 Msa1212960:CDS
GGATTGGTAAGAATGTGGTT+TGG 0.503248 8_1:+72991062 Msa1212960:CDS
ATTAGGTTCTACACAAGACT+TGG 0.507328 8_1:+72992473 Msa1212960:CDS
CAGAATCACAGCAAGGAGCT+TGG 0.509095 8_1:+72991010 Msa1212960:CDS
GTAAGAATGTGGTTTGGAAG+AGG 0.511446 8_1:+72991068 Msa1212960:CDS
TCTAACTCACATGCTTGTCT+GGG 0.520091 8_1:+72992538 Msa1212960:CDS
GAAGTGACTGGTTCATCTGT+TGG 0.525549 8_1:+72992512 Msa1212960:CDS
ACAAAGAGAAACACTTGGAA+TGG 0.525859 8_1:+72991121 Msa1212960:CDS
ATGCTTGTCTGGGGAGGTGT+TGG 0.529024 8_1:+72992548 Msa1212960:CDS
TCTAGTATTTCGGACATGGT+TGG 0.545589 8_1:-72990933 Msa1212970:three_prime_UTR
TGATGAAGTCTGGTTTGGAT+TGG 0.549707 8_1:-72990801 Msa1212970:three_prime_UTR
GTCCTAGAGTTTGGAGCTGA+AGG 0.555399 8_1:-72990980 Msa1212970:three_prime_UTR
GAAAGAAGAGGACCTTAGAA+TGG 0.557524 8_1:-72991256 Msa1212970:intron
GGGAGGTGTTGGTACTCGCA+TGG 0.557882 8_1:+72992559 Msa1212960:CDS
TGATTCTAGTATTTCGGACA+TGG 0.558688 8_1:-72990937 Msa1212970:three_prime_UTR
CCACATTCTTACCAATCCCT+CGG 0.564065 8_1:-72991057 Msa1212970:three_prime_UTR
TTGGTAACAGATAACGAGCT+TGG 0.577020 8_1:+72991029 Msa1212960:CDS
GTGTGTAATGCATGCTACTT+CGG 0.581801 8_1:-72992903 Msa1212970:three_prime_UTR
GACCTTCAGCTCCAAACTCT+AGG 0.585104 8_1:+72990978 Msa1212960:CDS
TGGCAATGAAATTGATTCGT+TGG 0.585470 8_1:-72990913 Msa1212970:three_prime_UTR
ACTCACATGCTTGTCTGGGG+AGG 0.587828 8_1:+72992542 Msa1212960:CDS
AAACCTGTGTATGAAGTGAC+TGG 0.589730 8_1:+72992500 Msa1212960:CDS
TTAGGTTCTACACAAGACTT+GGG 0.594680 8_1:+72992474 Msa1212960:CDS
CCGAGGGATTGGTAAGAATG+TGG 0.599865 8_1:+72991057 Msa1212960:CDS
ATTAGACATGGATATGATTG+TGG 0.601421 8_1:+72991188 Msa1212960:CDS
GGAGCTGTTGCTATTAGACA+TGG 0.604767 8_1:+72991176 Msa1212960:CDS
TAACGAGCTTGGAAAAGCCG+AGG 0.622512 8_1:+72991040 Msa1212960:CDS
GAACCAGTCACTTCATACAC+AGG 0.629180 8_1:-72992503 Msa1212970:three_prime_UTR
AACGAGCTTGGAAAAGCCGA+GGG 0.631401 8_1:+72991041 Msa1212960:CDS
GAAATACTAGAATCATCAAG+AGG 0.638232 8_1:+72990945 Msa1212960:CDS
AAACTACAAAGAGAAACACT+TGG 0.642328 8_1:+72991116 Msa1212960:CDS
GTTCTGGCTTAGCTTCATGG+TGG 0.651358 8_1:-72990757 Msa1212970:three_prime_UTR
AGTGACTGGTTCATCTGTTG+GGG 0.651858 8_1:+72992514 Msa1212960:CDS
CTAACTCACATGCTTGTCTG+GGG 0.662716 8_1:+72992539 Msa1212960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAACACAATTTAAATAAA+TGG + chr8_1:72992249-72992268 Msa1212960:intron 15.0%
!!! TTTTTTAATAACAGTTGATT+AGG + chr8_1:72992456-72992475 Msa1212960:intron 15.0%
!! AATTATCATGATATACATTT+AGG - chr8_1:72992808-72992827 Msa1212970:intron 15.0%
!! GTTAACACAATTTAAATAAA+TGG + chr8_1:72992249-72992268 Msa1212960:intron 15.0%
!!! TTTTTTAATAACAGTTGATT+AGG + chr8_1:72992456-72992475 Msa1212960:intron 15.0%
!! AATTATCATGATATACATTT+AGG - chr8_1:72992808-72992827 Msa1212970:intron 15.0%
!! CAATATAAAAGTTAAGGATA+AGG - chr8_1:72991285-72991304 Msa1212970:intron 20.0%
!! TAAAAGATGTAAAATGACTT+TGG + chr8_1:72991423-72991442 Msa1212960:intron 20.0%
!! AATTTCATTAACCATGAATT+TGG + chr8_1:72992310-72992329 Msa1212960:intron 20.0%
!! TTGAAGAACTTATGATAAAA+TGG + chr8_1:72992591-72992610 Msa1212960:CDS 20.0%
!! CAATATAAAAGTTAAGGATA+AGG - chr8_1:72991285-72991304 Msa1212970:intron 20.0%
!! TAAAAGATGTAAAATGACTT+TGG + chr8_1:72991423-72991442 Msa1212960:intron 20.0%
!! AATTTCATTAACCATGAATT+TGG + chr8_1:72992310-72992329 Msa1212960:intron 20.0%
!! TTGAAGAACTTATGATAAAA+TGG + chr8_1:72992591-72992610 Msa1212960:CDS 20.0%
!! TTTGAATCTGTTCTTTTGAA+GGG - chr8_1:72990874-72990893 Msa1212970:three_prime_UTR 25.0%
!! ATTTGAATCTGTTCTTTTGA+AGG - chr8_1:72990875-72990894 Msa1212970:three_prime_UTR 25.0%
!! TCTTGATGATTCTAGTATTT+CGG - chr8_1:72990946-72990965 Msa1212970:three_prime_UTR 25.0%
!! GAGAAATCAATATTTGGAAT+TGG + chr8_1:72991143-72991162 Msa1212960:CDS 25.0%
!!! TTTGGAATTGGTTTGTATAT+TGG + chr8_1:72991155-72991174 Msa1212960:CDS 25.0%
! ATAAAAGTTAAGGATAAGGT+TGG - chr8_1:72991281-72991300 Msa1212970:intron 25.0%
! TGCAGACAATATAAAAGTTA+AGG - chr8_1:72991291-72991310 Msa1212970:intron 25.0%
!!! GTCATTTTAATAAGAAAGTC+CGG + chr8_1:72991492-72991511 Msa1212960:intron 25.0%
!! TAAGTTCTTTTTGTACATTC+TGG + chr8_1:72991817-72991836 Msa1212960:intron 25.0%
! CAAAAACACAAAAATCAGAA+TGG - chr8_1:72991887-72991906 Msa1212970:intron 25.0%
!!! TTCTGATTTTTGTGTTTTTG+CGG + chr8_1:72991887-72991906 Msa1212960:intron 25.0%
! GTTAAAGAATTAGGATTGTT+AGG + chr8_1:72992061-72992080 Msa1212960:intron 25.0%
!!! GGTTTTTTAATGAGACAATT+TGG + chr8_1:72992085-72992104 Msa1212960:intron 25.0%
! TCAGCAAATATTATTAAGCT+AGG - chr8_1:72992186-72992205 Msa1212970:intron 25.0%
! CTTATATATGTTGCATAAGA+TGG + chr8_1:72992658-72992677 Msa1212960:intron 25.0%
!! TTTGAATCTGTTCTTTTGAA+GGG - chr8_1:72990874-72990893 Msa1212970:three_prime_UTR 25.0%
!! ATTTGAATCTGTTCTTTTGA+AGG - chr8_1:72990875-72990894 Msa1212970:three_prime_UTR 25.0%
!! TCTTGATGATTCTAGTATTT+CGG - chr8_1:72990946-72990965 Msa1212970:three_prime_UTR 25.0%
!! GAGAAATCAATATTTGGAAT+TGG + chr8_1:72991143-72991162 Msa1212960:CDS 25.0%
!!! TTTGGAATTGGTTTGTATAT+TGG + chr8_1:72991155-72991174 Msa1212960:CDS 25.0%
! ATAAAAGTTAAGGATAAGGT+TGG - chr8_1:72991281-72991300 Msa1212970:intron 25.0%
! TGCAGACAATATAAAAGTTA+AGG - chr8_1:72991291-72991310 Msa1212970:intron 25.0%
!!! GTCATTTTAATAAGAAAGTC+CGG + chr8_1:72991492-72991511 Msa1212960:intron 25.0%
!! TAAGTTCTTTTTGTACATTC+TGG + chr8_1:72991817-72991836 Msa1212960:intron 25.0%
! CAAAAACACAAAAATCAGAA+TGG - chr8_1:72991887-72991906 Msa1212970:intron 25.0%
!!! TTCTGATTTTTGTGTTTTTG+CGG + chr8_1:72991887-72991906 Msa1212960:intron 25.0%
! GTTAAAGAATTAGGATTGTT+AGG + chr8_1:72992061-72992080 Msa1212960:intron 25.0%
!!! GGTTTTTTAATGAGACAATT+TGG + chr8_1:72992085-72992104 Msa1212960:intron 25.0%
! TCAGCAAATATTATTAAGCT+AGG - chr8_1:72992186-72992205 Msa1212970:intron 25.0%
! CTTATATATGTTGCATAAGA+TGG + chr8_1:72992658-72992677 Msa1212960:intron 25.0%
! TGGTTTGTAAATTAAGGTTC+TGG - chr8_1:72990776-72990795 Msa1212970:three_prime_UTR 30.0%
! TTGGAATATTTGGTGAAAGA+GGG - chr8_1:72990830-72990849 Msa1212970:three_prime_UTR 30.0%
!! TTGAATCTGTTCTTTTGAAG+GGG - chr8_1:72990873-72990892 Msa1212970:three_prime_UTR 30.0%
GAAATACTAGAATCATCAAG+AGG + chr8_1:72990945-72990964 Msa1212960:CDS 30.0%
AAGAGGTAATATTCTTCACT+TGG + chr8_1:72991085-72991104 Msa1212960:CDS 30.0%
AAACTACAAAGAGAAACACT+TGG + chr8_1:72991116-72991135 Msa1212960:CDS 30.0%
GGAATGGAGAAATCAATATT+TGG + chr8_1:72991137-72991156 Msa1212960:CDS 30.0%
ATTAGACATGGATATGATTG+TGG + chr8_1:72991188-72991207 Msa1212960:CDS 30.0%
TTCTGATCTTTACCATTCTA+AGG + chr8_1:72991244-72991263 Msa1212960:CDS 30.0%
! CATCTTTTATACACAGTAAG+TGG - chr8_1:72991412-72991431 Msa1212970:intron 30.0%
AAATGATTCTGTATGTCCAT+TGG + chr8_1:72991453-72991472 Msa1212960:intron 30.0%
AATGATTCTGTATGTCCATT+GGG + chr8_1:72991454-72991473 Msa1212960:intron 30.0%
! TTTTAATAAGAAAGTCCGGA+AGG + chr8_1:72991496-72991515 Msa1212960:intron 30.0%
TTTAATAAGAAAGTCCGGAA+GGG + chr8_1:72991497-72991516 Msa1212960:intron 30.0%
GTTATTTGGAAAGCTAGAAA+TGG + chr8_1:72991551-72991570 Msa1212960:intron 30.0%
TGGAATGATCTTTAACAAAG+CGG + chr8_1:72991571-72991590 Msa1212960:intron 30.0%
TCCTGTTCTGTTAAAGAATT+AGG + chr8_1:72992052-72992071 Msa1212960:intron 30.0%
TCCTAATTCTTTAACAGAAC+AGG - chr8_1:72992056-72992075 Msa1212970:intron 30.0%
AAAGAATTAGGATTGTTAGG+AGG + chr8_1:72992064-72992083 Msa1212960:intron 30.0%
TTTGAACACTTACTATGAGA+CGG + chr8_1:72992375-72992394 Msa1212960:intron 30.0%
TATCATAAGTTCTTCAACAC+TGG - chr8_1:72992588-72992607 Msa1212970:three_prime_UTR 30.0%
! AATAGACAAGTTTTACAGAC+AGG - chr8_1:72992692-72992711 Msa1212970:intron 30.0%
! TCATGATATACATTTAGGAC+AGG - chr8_1:72992803-72992822 Msa1212970:intron 30.0%
! TGGTTTGTAAATTAAGGTTC+TGG - chr8_1:72990776-72990795 Msa1212970:three_prime_UTR 30.0%
! TTGGAATATTTGGTGAAAGA+GGG - chr8_1:72990830-72990849 Msa1212970:three_prime_UTR 30.0%
!! TTGAATCTGTTCTTTTGAAG+GGG - chr8_1:72990873-72990892 Msa1212970:three_prime_UTR 30.0%
GAAATACTAGAATCATCAAG+AGG + chr8_1:72990945-72990964 Msa1212960:CDS 30.0%
AAGAGGTAATATTCTTCACT+TGG + chr8_1:72991085-72991104 Msa1212960:CDS 30.0%
AAACTACAAAGAGAAACACT+TGG + chr8_1:72991116-72991135 Msa1212960:CDS 30.0%
GGAATGGAGAAATCAATATT+TGG + chr8_1:72991137-72991156 Msa1212960:CDS 30.0%
ATTAGACATGGATATGATTG+TGG + chr8_1:72991188-72991207 Msa1212960:CDS 30.0%
TTCTGATCTTTACCATTCTA+AGG + chr8_1:72991244-72991263 Msa1212960:CDS 30.0%
! CATCTTTTATACACAGTAAG+TGG - chr8_1:72991412-72991431 Msa1212970:intron 30.0%
AAATGATTCTGTATGTCCAT+TGG + chr8_1:72991453-72991472 Msa1212960:intron 30.0%
AATGATTCTGTATGTCCATT+GGG + chr8_1:72991454-72991473 Msa1212960:intron 30.0%
! TTTTAATAAGAAAGTCCGGA+AGG + chr8_1:72991496-72991515 Msa1212960:intron 30.0%
TTTAATAAGAAAGTCCGGAA+GGG + chr8_1:72991497-72991516 Msa1212960:intron 30.0%
GTTATTTGGAAAGCTAGAAA+TGG + chr8_1:72991551-72991570 Msa1212960:intron 30.0%
TGGAATGATCTTTAACAAAG+CGG + chr8_1:72991571-72991590 Msa1212960:intron 30.0%
TCCTGTTCTGTTAAAGAATT+AGG + chr8_1:72992052-72992071 Msa1212960:intron 30.0%
TCCTAATTCTTTAACAGAAC+AGG - chr8_1:72992056-72992075 Msa1212970:intron 30.0%
AAAGAATTAGGATTGTTAGG+AGG + chr8_1:72992064-72992083 Msa1212960:intron 30.0%
TTTGAACACTTACTATGAGA+CGG + chr8_1:72992375-72992394 Msa1212960:intron 30.0%
TATCATAAGTTCTTCAACAC+TGG - chr8_1:72992588-72992607 Msa1212970:three_prime_UTR 30.0%
! AATAGACAAGTTTTACAGAC+AGG - chr8_1:72992692-72992711 Msa1212970:intron 30.0%
! TCATGATATACATTTAGGAC+AGG - chr8_1:72992803-72992822 Msa1212970:intron 30.0%
!! GTGGGTTGGTTTGTAAATTA+AGG - chr8_1:72990782-72990801 Msa1212970:three_prime_UTR 35.0%
! GTTGGAATATTTGGTGAAAG+AGG - chr8_1:72990831-72990850 Msa1212970:three_prime_UTR 35.0%
!! TGGCAATGAAATTGATTCGT+TGG - chr8_1:72990916-72990935 Msa1212970:three_prime_UTR 35.0%
TGATTCTAGTATTTCGGACA+TGG - chr8_1:72990940-72990959 Msa1212970:three_prime_UTR 35.0%
! CTTGCTGTGATTCTGAAAAA+GGG - chr8_1:72991005-72991024 Msa1212970:three_prime_UTR 35.0%
ACAAAGAGAAACACTTGGAA+TGG + chr8_1:72991121-72991140 Msa1212960:CDS 35.0%
TCTTTAACAAAGCGGTTGTA+AGG + chr8_1:72991579-72991598 Msa1212960:intron 35.0%
TTATCTCATCAAACACTCCA+CGG - chr8_1:72991705-72991724 Msa1212970:intron 35.0%
ACAGAAGAAGAAAACCAGTA+GGG - chr8_1:72991778-72991797 Msa1212970:intron 35.0%
AACAGAAGAAGAAAACCAGT+AGG - chr8_1:72991779-72991798 Msa1212970:intron 35.0%
! TCCTTTTCCTTTTTTTCCAG+CGG + chr8_1:72991954-72991973 Msa1212960:intron 35.0%
! GGTTTAGGCACTTTTCATTT+TGG + chr8_1:72992014-72992033 Msa1212960:intron 35.0%
ATTAACCATGAATTTGGACG+TGG + chr8_1:72992316-72992335 Msa1212960:intron 35.0%
GTTTGAACACCTGCAAATTA+TGG - chr8_1:72992346-72992365 Msa1212970:intron 35.0%
ATTAGGTTCTACACAAGACT+TGG + chr8_1:72992473-72992492 Msa1212960:CDS 35.0%
TTAGGTTCTACACAAGACTT+GGG + chr8_1:72992474-72992493 Msa1212960:CDS 35.0%
! AGATATCTTCTAGCTAGCAA+AGG + chr8_1:72992761-72992780 Msa1212960:intron 35.0%
!! GTGGGTTGGTTTGTAAATTA+AGG - chr8_1:72990782-72990801 Msa1212970:three_prime_UTR 35.0%
! GTTGGAATATTTGGTGAAAG+AGG - chr8_1:72990831-72990850 Msa1212970:three_prime_UTR 35.0%
!! TGGCAATGAAATTGATTCGT+TGG - chr8_1:72990916-72990935 Msa1212970:three_prime_UTR 35.0%
TGATTCTAGTATTTCGGACA+TGG - chr8_1:72990940-72990959 Msa1212970:three_prime_UTR 35.0%
! CTTGCTGTGATTCTGAAAAA+GGG - chr8_1:72991005-72991024 Msa1212970:three_prime_UTR 35.0%
ACAAAGAGAAACACTTGGAA+TGG + chr8_1:72991121-72991140 Msa1212960:CDS 35.0%
TCTTTAACAAAGCGGTTGTA+AGG + chr8_1:72991579-72991598 Msa1212960:intron 35.0%
TTATCTCATCAAACACTCCA+CGG - chr8_1:72991705-72991724 Msa1212970:intron 35.0%
ACAGAAGAAGAAAACCAGTA+GGG - chr8_1:72991778-72991797 Msa1212970:intron 35.0%
AACAGAAGAAGAAAACCAGT+AGG - chr8_1:72991779-72991798 Msa1212970:intron 35.0%
! TCCTTTTCCTTTTTTTCCAG+CGG + chr8_1:72991954-72991973 Msa1212960:intron 35.0%
! GGTTTAGGCACTTTTCATTT+TGG + chr8_1:72992014-72992033 Msa1212960:intron 35.0%
ATTAACCATGAATTTGGACG+TGG + chr8_1:72992316-72992335 Msa1212960:intron 35.0%
GTTTGAACACCTGCAAATTA+TGG - chr8_1:72992346-72992365 Msa1212970:intron 35.0%
ATTAGGTTCTACACAAGACT+TGG + chr8_1:72992473-72992492 Msa1212960:CDS 35.0%
TTAGGTTCTACACAAGACTT+GGG + chr8_1:72992474-72992493 Msa1212960:CDS 35.0%
! AGATATCTTCTAGCTAGCAA+AGG + chr8_1:72992761-72992780 Msa1212960:intron 35.0%
!! TGATGAAGTCTGGTTTGGAT+TGG - chr8_1:72990804-72990823 Msa1212970:three_prime_UTR 40.0%
AGATGGGAGGTTGGAATATT+TGG - chr8_1:72990840-72990859 Msa1212970:three_prime_UTR 40.0%
!! AATCTGTTCTTTTGAAGGGG+AGG - chr8_1:72990870-72990889 Msa1212970:three_prime_UTR 40.0%
TCTAGTATTTCGGACATGGT+TGG - chr8_1:72990936-72990955 Msa1212970:three_prime_UTR 40.0%
TGAAAAAGGGTCCTAGAGTT+TGG - chr8_1:72990992-72991011 Msa1212970:three_prime_UTR 40.0%
! CCTTGCTGTGATTCTGAAAA+AGG - chr8_1:72991006-72991025 Msa1212970:three_prime_UTR 40.0%
!!! CCTTTTTCAGAATCACAGCA+AGG + chr8_1:72991003-72991022 Msa1212960:CDS 40.0%
! TTGGTAACAGATAACGAGCT+TGG + chr8_1:72991029-72991048 Msa1212960:CDS 40.0%
! GGATTGGTAAGAATGTGGTT+TGG + chr8_1:72991062-72991081 Msa1212960:CDS 40.0%
! GTAAGAATGTGGTTTGGAAG+AGG + chr8_1:72991068-72991087 Msa1212960:CDS 40.0%
GAAAGAAGAGGACCTTAGAA+TGG - chr8_1:72991259-72991278 Msa1212970:intron 40.0%
AGGATAAGGTTGGAAAGAAG+AGG - chr8_1:72991271-72991290 Msa1212970:intron 40.0%
TGTATGTCCATTGGGAATGT+TGG + chr8_1:72991462-72991481 Msa1212960:intron 40.0%
GTATGTCCATTGGGAATGTT+GGG + chr8_1:72991463-72991482 Msa1212960:intron 40.0%
! AAGCTGCGATTTGGGTTATT+TGG + chr8_1:72991537-72991556 Msa1212960:intron 40.0%
TTAACAAAGCGGTTGTAAGG+TGG + chr8_1:72991582-72991601 Msa1212960:intron 40.0%
TAACAAAGCGGTTGTAAGGT+GGG + chr8_1:72991583-72991602 Msa1212960:intron 40.0%
GGAATTAGTGGAAGAGGTTA+AGG + chr8_1:72991607-72991626 Msa1212960:intron 40.0%
GTTAAACCGCTTCAATACTC+CGG + chr8_1:72991649-72991668 Msa1212960:intron 40.0%
TATCTCATCAAACACTCCAC+GGG - chr8_1:72991704-72991723 Msa1212970:intron 40.0%
!! CATTCTGGCTTTCTGTTCTT+CGG + chr8_1:72991832-72991851 Msa1212960:intron 40.0%
!! TTTGCGGCTTTGTTTACTTC+TGG + chr8_1:72991903-72991922 Msa1212960:intron 40.0%
!! GGCTTTGTTTACTTCTGGTT+AGG + chr8_1:72991908-72991927 Msa1212960:intron 40.0%
ACCGCTGGAAAAAAAGGAAA+AGG - chr8_1:72991958-72991977 Msa1212970:intron 40.0%
! TTTTCCTTTTTTTCCAGCGG+TGG + chr8_1:72991957-72991976 Msa1212960:intron 40.0%
!!! GGTTTGTTTTGTAGGCAGTT+GGG + chr8_1:72991991-72992010 Msa1212960:intron 40.0%
!!! GTTTGTTTTGTAGGCAGTTG+GGG + chr8_1:72991992-72992011 Msa1212960:intron 40.0%
!!! TTTGTTTTGTAGGCAGTTGG+GGG + chr8_1:72991993-72992012 Msa1212960:intron 40.0%
TGATTATGTGCCTTTGATCG+TGG + chr8_1:72992108-72992127 Msa1212960:intron 40.0%
GATTATGTGCCTTTGATCGT+GGG + chr8_1:72992109-72992128 Msa1212960:intron 40.0%
!!! GTACACTTTTTCCTCCTTAG+CGG + chr8_1:72992139-72992158 Msa1212960:intron 40.0%
!!! TACACTTTTTCCTCCTTAGC+GGG + chr8_1:72992140-72992159 Msa1212960:intron 40.0%
GTTAACCACGTCCAAATTCA+TGG - chr8_1:72992324-72992343 Msa1212970:intron 40.0%
! CGTGGTTAACCATAATTTGC+AGG + chr8_1:72992334-72992353 Msa1212960:intron 40.0%
AACACTTACTATGAGACGGA+GGG + chr8_1:72992379-72992398 Msa1212960:intron 40.0%
GGAGTAGTAAGATGGTACAT+GGG + chr8_1:72992400-72992419 Msa1212960:intron 40.0%
AAACCTGTGTATGAAGTGAC+TGG + chr8_1:72992500-72992519 Msa1212960:CDS 40.0%
! AAGTGACTGGTTCATCTGTT+GGG + chr8_1:72992513-72992532 Msa1212960:CDS 40.0%
ATCTAACTCACATGCTTGTC+TGG + chr8_1:72992537-72992556 Msa1212960:CDS 40.0%
TCTAACTCACATGCTTGTCT+GGG + chr8_1:72992538-72992557 Msa1212960:CDS 40.0%
!! TGATGAAGTCTGGTTTGGAT+TGG - chr8_1:72990804-72990823 Msa1212970:three_prime_UTR 40.0%
AGATGGGAGGTTGGAATATT+TGG - chr8_1:72990840-72990859 Msa1212970:three_prime_UTR 40.0%
!! AATCTGTTCTTTTGAAGGGG+AGG - chr8_1:72990870-72990889 Msa1212970:three_prime_UTR 40.0%
TCTAGTATTTCGGACATGGT+TGG - chr8_1:72990936-72990955 Msa1212970:three_prime_UTR 40.0%
TGAAAAAGGGTCCTAGAGTT+TGG - chr8_1:72990992-72991011 Msa1212970:three_prime_UTR 40.0%
! CCTTGCTGTGATTCTGAAAA+AGG - chr8_1:72991006-72991025 Msa1212970:three_prime_UTR 40.0%
!!! CCTTTTTCAGAATCACAGCA+AGG + chr8_1:72991003-72991022 Msa1212960:CDS 40.0%
! TTGGTAACAGATAACGAGCT+TGG + chr8_1:72991029-72991048 Msa1212960:CDS 40.0%
! GGATTGGTAAGAATGTGGTT+TGG + chr8_1:72991062-72991081 Msa1212960:CDS 40.0%
! GTAAGAATGTGGTTTGGAAG+AGG + chr8_1:72991068-72991087 Msa1212960:CDS 40.0%
GAAAGAAGAGGACCTTAGAA+TGG - chr8_1:72991259-72991278 Msa1212970:intron 40.0%
AGGATAAGGTTGGAAAGAAG+AGG - chr8_1:72991271-72991290 Msa1212970:intron 40.0%
TGTATGTCCATTGGGAATGT+TGG + chr8_1:72991462-72991481 Msa1212960:intron 40.0%
GTATGTCCATTGGGAATGTT+GGG + chr8_1:72991463-72991482 Msa1212960:intron 40.0%
! AAGCTGCGATTTGGGTTATT+TGG + chr8_1:72991537-72991556 Msa1212960:intron 40.0%
TTAACAAAGCGGTTGTAAGG+TGG + chr8_1:72991582-72991601 Msa1212960:intron 40.0%
TAACAAAGCGGTTGTAAGGT+GGG + chr8_1:72991583-72991602 Msa1212960:intron 40.0%
GGAATTAGTGGAAGAGGTTA+AGG + chr8_1:72991607-72991626 Msa1212960:intron 40.0%
GTTAAACCGCTTCAATACTC+CGG + chr8_1:72991649-72991668 Msa1212960:intron 40.0%
TATCTCATCAAACACTCCAC+GGG - chr8_1:72991704-72991723 Msa1212970:intron 40.0%
!! CATTCTGGCTTTCTGTTCTT+CGG + chr8_1:72991832-72991851 Msa1212960:intron 40.0%
!! TTTGCGGCTTTGTTTACTTC+TGG + chr8_1:72991903-72991922 Msa1212960:intron 40.0%
!! GGCTTTGTTTACTTCTGGTT+AGG + chr8_1:72991908-72991927 Msa1212960:intron 40.0%
ACCGCTGGAAAAAAAGGAAA+AGG - chr8_1:72991958-72991977 Msa1212970:intron 40.0%
! TTTTCCTTTTTTTCCAGCGG+TGG + chr8_1:72991957-72991976 Msa1212960:intron 40.0%
!!! GGTTTGTTTTGTAGGCAGTT+GGG + chr8_1:72991991-72992010 Msa1212960:intron 40.0%
!!! GTTTGTTTTGTAGGCAGTTG+GGG + chr8_1:72991992-72992011 Msa1212960:intron 40.0%
!!! TTTGTTTTGTAGGCAGTTGG+GGG + chr8_1:72991993-72992012 Msa1212960:intron 40.0%
TGATTATGTGCCTTTGATCG+TGG + chr8_1:72992108-72992127 Msa1212960:intron 40.0%
GATTATGTGCCTTTGATCGT+GGG + chr8_1:72992109-72992128 Msa1212960:intron 40.0%
!!! GTACACTTTTTCCTCCTTAG+CGG + chr8_1:72992139-72992158 Msa1212960:intron 40.0%
!!! TACACTTTTTCCTCCTTAGC+GGG + chr8_1:72992140-72992159 Msa1212960:intron 40.0%
GTTAACCACGTCCAAATTCA+TGG - chr8_1:72992324-72992343 Msa1212970:intron 40.0%
! CGTGGTTAACCATAATTTGC+AGG + chr8_1:72992334-72992353 Msa1212960:intron 40.0%
AACACTTACTATGAGACGGA+GGG + chr8_1:72992379-72992398 Msa1212960:intron 40.0%
GGAGTAGTAAGATGGTACAT+GGG + chr8_1:72992400-72992419 Msa1212960:intron 40.0%
AAACCTGTGTATGAAGTGAC+TGG + chr8_1:72992500-72992519 Msa1212960:CDS 40.0%
! AAGTGACTGGTTCATCTGTT+GGG + chr8_1:72992513-72992532 Msa1212960:CDS 40.0%
ATCTAACTCACATGCTTGTC+TGG + chr8_1:72992537-72992556 Msa1212960:CDS 40.0%
TCTAACTCACATGCTTGTCT+GGG + chr8_1:72992538-72992557 Msa1212960:CDS 40.0%
!! AAGGTTCTGGCTTAGCTTCA+TGG - chr8_1:72990763-72990782 Msa1212970:three_prime_UTR 45.0%
!! GAAGTCTGGTTTGGATTGGT+GGG - chr8_1:72990800-72990819 Msa1212970:three_prime_UTR 45.0%
!! TGAAGTCTGGTTTGGATTGG+TGG - chr8_1:72990801-72990820 Msa1212970:three_prime_UTR 45.0%
GGAGATGATGAAGTCTGGTT+TGG - chr8_1:72990809-72990828 Msa1212970:three_prime_UTR 45.0%
AAGAGGGAGATGATGAAGTC+TGG - chr8_1:72990814-72990833 Msa1212970:three_prime_UTR 45.0%
!! GTTCTTTTGAAGGGGAGGTA+GGG - chr8_1:72990865-72990884 Msa1212970:three_prime_UTR 45.0%
!! TGTTCTTTTGAAGGGGAGGT+AGG - chr8_1:72990866-72990885 Msa1212970:three_prime_UTR 45.0%
CCACATTCTTACCAATCCCT+CGG - chr8_1:72991060-72991079 Msa1212970:three_prime_UTR 45.0%
! GGAGCTGTTGCTATTAGACA+TGG + chr8_1:72991176-72991195 Msa1212960:CDS 45.0%
AAATCATCCGCAATCCCTTC+CGG - chr8_1:72991514-72991533 Msa1212970:intron 45.0%
! TGATTTGGCAAGCTGCGATT+TGG + chr8_1:72991528-72991547 Msa1212960:intron 45.0%
GATTTGGCAAGCTGCGATTT+GGG + chr8_1:72991529-72991548 Msa1212960:intron 45.0%
TGTAAGGTGGGAGGAATTAG+TGG + chr8_1:72991595-72991614 Msa1212960:intron 45.0%
AAGAGGTTAAGGTGATGTCG+TGG + chr8_1:72991618-72991637 Msa1212960:intron 45.0%
CATTCGTAGAACATGCAAGC+CGG - chr8_1:72991671-72991690 Msa1212970:intron 45.0%
GCATGTTCTACGAATGGAGT+TGG + chr8_1:72991675-72991694 Msa1212960:intron 45.0%
CTGCTGCTGTCTGTTTGTTT+GGG + chr8_1:72991728-72991747 Msa1212960:intron 45.0%
TGCTGCTGTCTGTTTGTTTG+GGG + chr8_1:72991729-72991748 Msa1212960:intron 45.0%
TTCTTCTTCTGTTCCTGCTG+CGG + chr8_1:72991786-72991805 Msa1212960:intron 45.0%
TCTGTTCTTCGGTTGACAGT+AGG + chr8_1:72991843-72991862 Msa1212960:intron 45.0%
CTGTTCTTCGGTTGACAGTA+GGG + chr8_1:72991844-72991863 Msa1212960:intron 45.0%
!!! TGCTGGAGGGTTTGTTTTGT+AGG + chr8_1:72991983-72992002 Msa1212960:intron 45.0%
!!! GGGTTTGTTTTGTAGGCAGT+TGG + chr8_1:72991990-72992009 Msa1212960:intron 45.0%
GGCTAATTGCGTTCAGTAGA+TGG + chr8_1:72992270-72992289 Msa1212960:intron 45.0%
GAACACTTACTATGAGACGG+AGG + chr8_1:72992378-72992397 Msa1212960:intron 45.0%
GGGAGTAGTAAGATGGTACA+TGG + chr8_1:72992399-72992418 Msa1212960:intron 45.0%
GAACCAGTCACTTCATACAC+AGG - chr8_1:72992506-72992525 Msa1212970:three_prime_UTR 45.0%
! GAAGTGACTGGTTCATCTGT+TGG + chr8_1:72992512-72992531 Msa1212960:CDS 45.0%
! AGTGACTGGTTCATCTGTTG+GGG + chr8_1:72992514-72992533 Msa1212960:CDS 45.0%
CTAACTCACATGCTTGTCTG+GGG + chr8_1:72992539-72992558 Msa1212960:CDS 45.0%
!! AAGGTTCTGGCTTAGCTTCA+TGG - chr8_1:72990763-72990782 Msa1212970:three_prime_UTR 45.0%
!! GAAGTCTGGTTTGGATTGGT+GGG - chr8_1:72990800-72990819 Msa1212970:three_prime_UTR 45.0%
!! TGAAGTCTGGTTTGGATTGG+TGG - chr8_1:72990801-72990820 Msa1212970:three_prime_UTR 45.0%
GGAGATGATGAAGTCTGGTT+TGG - chr8_1:72990809-72990828 Msa1212970:three_prime_UTR 45.0%
AAGAGGGAGATGATGAAGTC+TGG - chr8_1:72990814-72990833 Msa1212970:three_prime_UTR 45.0%
!! GTTCTTTTGAAGGGGAGGTA+GGG - chr8_1:72990865-72990884 Msa1212970:three_prime_UTR 45.0%
!! TGTTCTTTTGAAGGGGAGGT+AGG - chr8_1:72990866-72990885 Msa1212970:three_prime_UTR 45.0%
CCACATTCTTACCAATCCCT+CGG - chr8_1:72991060-72991079 Msa1212970:three_prime_UTR 45.0%
! GGAGCTGTTGCTATTAGACA+TGG + chr8_1:72991176-72991195 Msa1212960:CDS 45.0%
AAATCATCCGCAATCCCTTC+CGG - chr8_1:72991514-72991533 Msa1212970:intron 45.0%
! TGATTTGGCAAGCTGCGATT+TGG + chr8_1:72991528-72991547 Msa1212960:intron 45.0%
GATTTGGCAAGCTGCGATTT+GGG + chr8_1:72991529-72991548 Msa1212960:intron 45.0%
TGTAAGGTGGGAGGAATTAG+TGG + chr8_1:72991595-72991614 Msa1212960:intron 45.0%
AAGAGGTTAAGGTGATGTCG+TGG + chr8_1:72991618-72991637 Msa1212960:intron 45.0%
CATTCGTAGAACATGCAAGC+CGG - chr8_1:72991671-72991690 Msa1212970:intron 45.0%
GCATGTTCTACGAATGGAGT+TGG + chr8_1:72991675-72991694 Msa1212960:intron 45.0%
CTGCTGCTGTCTGTTTGTTT+GGG + chr8_1:72991728-72991747 Msa1212960:intron 45.0%
TGCTGCTGTCTGTTTGTTTG+GGG + chr8_1:72991729-72991748 Msa1212960:intron 45.0%
TTCTTCTTCTGTTCCTGCTG+CGG + chr8_1:72991786-72991805 Msa1212960:intron 45.0%
TCTGTTCTTCGGTTGACAGT+AGG + chr8_1:72991843-72991862 Msa1212960:intron 45.0%
CTGTTCTTCGGTTGACAGTA+GGG + chr8_1:72991844-72991863 Msa1212960:intron 45.0%
!!! TGCTGGAGGGTTTGTTTTGT+AGG + chr8_1:72991983-72992002 Msa1212960:intron 45.0%
!!! GGGTTTGTTTTGTAGGCAGT+TGG + chr8_1:72991990-72992009 Msa1212960:intron 45.0%
GGCTAATTGCGTTCAGTAGA+TGG + chr8_1:72992270-72992289 Msa1212960:intron 45.0%
GAACACTTACTATGAGACGG+AGG + chr8_1:72992378-72992397 Msa1212960:intron 45.0%
GGGAGTAGTAAGATGGTACA+TGG + chr8_1:72992399-72992418 Msa1212960:intron 45.0%
GAACCAGTCACTTCATACAC+AGG - chr8_1:72992506-72992525 Msa1212970:three_prime_UTR 45.0%
! GAAGTGACTGGTTCATCTGT+TGG + chr8_1:72992512-72992531 Msa1212960:CDS 45.0%
! AGTGACTGGTTCATCTGTTG+GGG + chr8_1:72992514-72992533 Msa1212960:CDS 45.0%
CTAACTCACATGCTTGTCTG+GGG + chr8_1:72992539-72992558 Msa1212960:CDS 45.0%
!!! CTTTTATTATAATTTTAAAA+TGG + chr8_1:72992227-72992246 Msa1212960:intron 5.0%
!!! CTTTTATTATAATTTTAAAA+TGG + chr8_1:72992227-72992246 Msa1212960:intron 5.0%
!! GTTCTGGCTTAGCTTCATGG+TGG - chr8_1:72990760-72990779 Msa1212970:three_prime_UTR 50.0%
!! TCTGGTTTGGATTGGTGGGT+TGG - chr8_1:72990796-72990815 Msa1212970:three_prime_UTR 50.0%
GACCTTCAGCTCCAAACTCT+AGG + chr8_1:72990978-72990997 Msa1212960:CDS 50.0%
! GTCCTAGAGTTTGGAGCTGA+AGG - chr8_1:72990983-72991002 Msa1212970:three_prime_UTR 50.0%
CAGAATCACAGCAAGGAGCT+TGG + chr8_1:72991010-72991029 Msa1212960:CDS 50.0%
TAACGAGCTTGGAAAAGCCG+AGG + chr8_1:72991040-72991059 Msa1212960:CDS 50.0%
AACGAGCTTGGAAAAGCCGA+GGG + chr8_1:72991041-72991060 Msa1212960:CDS 50.0%
! CCGAGGGATTGGTAAGAATG+TGG + chr8_1:72991057-72991076 Msa1212960:CDS 50.0%
TGTCCATTGGGAATGTTGGG+TGG + chr8_1:72991466-72991485 Msa1212960:intron 50.0%
GTCCATTGGGAATGTTGGGT+GGG + chr8_1:72991467-72991486 Msa1212960:intron 50.0%
AGAAAGTCCGGAAGGGATTG+CGG + chr8_1:72991504-72991523 Msa1212960:intron 50.0%
GGAAGGGATTGCGGATGATT+TGG + chr8_1:72991513-72991532 Msa1212960:intron 50.0%
GTGGGAGGAATTAGTGGAAG+AGG + chr8_1:72991601-72991620 Msa1212960:intron 50.0%
AGGTTAAGGTGATGTCGTGG+AGG + chr8_1:72991621-72991640 Msa1212960:intron 50.0%
TTAAGGTGATGTCGTGGAGG+TGG + chr8_1:72991624-72991643 Msa1212960:intron 50.0%
!! TGCAAGCCGGAGTATTGAAG+CGG - chr8_1:72991658-72991677 Msa1212970:intron 50.0%
CGGCTTGCATGTTCTACGAA+TGG + chr8_1:72991669-72991688 Msa1212960:intron 50.0%
GCTGCTGCTGTCTGTTTGTT+TGG + chr8_1:72991727-72991746 Msa1212960:intron 50.0%
! GTTTGGGGTAGAATTGCAGC+TGG + chr8_1:72991744-72991763 Msa1212960:intron 50.0%
TCTGGTTAGGCTACTGTTGC+TGG + chr8_1:72991921-72991940 Msa1212960:intron 50.0%
ACAGCCACCGCTGGAAAAAA+AGG - chr8_1:72991964-72991983 Msa1212970:intron 50.0%
TTGTAGGCAGTTGGGGGTTT+AGG + chr8_1:72991999-72992018 Msa1212960:intron 50.0%
!! ACAAGAGTGCCCACGATCAA+AGG - chr8_1:72992121-72992140 Msa1212970:intron 50.0%
AAGACGCACTAAACCCGCTA+AGG - chr8_1:72992156-72992175 Msa1212970:intron 50.0%
AGACGGAGGGAGTAGTAAGA+TGG + chr8_1:72992392-72992411 Msa1212960:intron 50.0%
AAAGTGTGATCTGCTGCCTC+AGG + chr8_1:72992867-72992886 Msa1212960:intron 50.0%
CGGTATTTCACGTACACCTG+AGG - chr8_1:72992886-72992905 Msa1212970:intron 50.0%
!! GTTCTGGCTTAGCTTCATGG+TGG - chr8_1:72990760-72990779 Msa1212970:three_prime_UTR 50.0%
!! TCTGGTTTGGATTGGTGGGT+TGG - chr8_1:72990796-72990815 Msa1212970:three_prime_UTR 50.0%
GACCTTCAGCTCCAAACTCT+AGG + chr8_1:72990978-72990997 Msa1212960:CDS 50.0%
! GTCCTAGAGTTTGGAGCTGA+AGG - chr8_1:72990983-72991002 Msa1212970:three_prime_UTR 50.0%
CAGAATCACAGCAAGGAGCT+TGG + chr8_1:72991010-72991029 Msa1212960:CDS 50.0%
TAACGAGCTTGGAAAAGCCG+AGG + chr8_1:72991040-72991059 Msa1212960:CDS 50.0%
AACGAGCTTGGAAAAGCCGA+GGG + chr8_1:72991041-72991060 Msa1212960:CDS 50.0%
! CCGAGGGATTGGTAAGAATG+TGG + chr8_1:72991057-72991076 Msa1212960:CDS 50.0%
TGTCCATTGGGAATGTTGGG+TGG + chr8_1:72991466-72991485 Msa1212960:intron 50.0%
GTCCATTGGGAATGTTGGGT+GGG + chr8_1:72991467-72991486 Msa1212960:intron 50.0%
AGAAAGTCCGGAAGGGATTG+CGG + chr8_1:72991504-72991523 Msa1212960:intron 50.0%
GGAAGGGATTGCGGATGATT+TGG + chr8_1:72991513-72991532 Msa1212960:intron 50.0%
GTGGGAGGAATTAGTGGAAG+AGG + chr8_1:72991601-72991620 Msa1212960:intron 50.0%
AGGTTAAGGTGATGTCGTGG+AGG + chr8_1:72991621-72991640 Msa1212960:intron 50.0%
TTAAGGTGATGTCGTGGAGG+TGG + chr8_1:72991624-72991643 Msa1212960:intron 50.0%
!! TGCAAGCCGGAGTATTGAAG+CGG - chr8_1:72991658-72991677 Msa1212970:intron 50.0%
CGGCTTGCATGTTCTACGAA+TGG + chr8_1:72991669-72991688 Msa1212960:intron 50.0%
GCTGCTGCTGTCTGTTTGTT+TGG + chr8_1:72991727-72991746 Msa1212960:intron 50.0%
! GTTTGGGGTAGAATTGCAGC+TGG + chr8_1:72991744-72991763 Msa1212960:intron 50.0%
TCTGGTTAGGCTACTGTTGC+TGG + chr8_1:72991921-72991940 Msa1212960:intron 50.0%
ACAGCCACCGCTGGAAAAAA+AGG - chr8_1:72991964-72991983 Msa1212970:intron 50.0%
TTGTAGGCAGTTGGGGGTTT+AGG + chr8_1:72991999-72992018 Msa1212960:intron 50.0%
!! ACAAGAGTGCCCACGATCAA+AGG - chr8_1:72992121-72992140 Msa1212970:intron 50.0%
AAGACGCACTAAACCCGCTA+AGG - chr8_1:72992156-72992175 Msa1212970:intron 50.0%
AGACGGAGGGAGTAGTAAGA+TGG + chr8_1:72992392-72992411 Msa1212960:intron 50.0%
AAAGTGTGATCTGCTGCCTC+AGG + chr8_1:72992867-72992886 Msa1212960:intron 50.0%
CGGTATTTCACGTACACCTG+AGG - chr8_1:72992886-72992905 Msa1212970:intron 50.0%
AAGGGGAGGTAGGGAGAGAT+GGG - chr8_1:72990856-72990875 Msa1212970:three_prime_UTR 55.0%
GCTTGGAAAAGCCGAGGGAT+TGG + chr8_1:72991046-72991065 Msa1212960:CDS 55.0%
CTCCCACCCAACATTCCCAA+TGG - chr8_1:72991472-72991491 Msa1212970:intron 55.0%
CATTGGGAATGTTGGGTGGG+AGG + chr8_1:72991470-72991489 Msa1212960:intron 55.0%
CAAAGCGGTTGTAAGGTGGG+AGG + chr8_1:72991586-72991605 Msa1212960:intron 55.0%
GGGTAGAATTGCAGCTGGTG+CGG + chr8_1:72991749-72991768 Msa1212960:intron 55.0%
CTTCTGTTCCTGCTGCGGTT+CGG + chr8_1:72991791-72991810 Msa1212960:intron 55.0%
TTCTGTTCCTGCTGCGGTTC+GGG + chr8_1:72991792-72991811 Msa1212960:intron 55.0%
ACTTAAACCCGAACCGCAGC+AGG - chr8_1:72991802-72991821 Msa1212970:intron 55.0%
ACGCACTAAACCCGCTAAGG+AGG - chr8_1:72992153-72992172 Msa1212970:intron 55.0%
ACTCACATGCTTGTCTGGGG+AGG + chr8_1:72992542-72992561 Msa1212960:CDS 55.0%
! ATGCTTGTCTGGGGAGGTGT+TGG + chr8_1:72992548-72992567 Msa1212960:CDS 55.0%
AAGGGGAGGTAGGGAGAGAT+GGG - chr8_1:72990856-72990875 Msa1212970:three_prime_UTR 55.0%
GCTTGGAAAAGCCGAGGGAT+TGG + chr8_1:72991046-72991065 Msa1212960:CDS 55.0%
CTCCCACCCAACATTCCCAA+TGG - chr8_1:72991472-72991491 Msa1212970:intron 55.0%
CATTGGGAATGTTGGGTGGG+AGG + chr8_1:72991470-72991489 Msa1212960:intron 55.0%
CAAAGCGGTTGTAAGGTGGG+AGG + chr8_1:72991586-72991605 Msa1212960:intron 55.0%
GGGTAGAATTGCAGCTGGTG+CGG + chr8_1:72991749-72991768 Msa1212960:intron 55.0%
CTTCTGTTCCTGCTGCGGTT+CGG + chr8_1:72991791-72991810 Msa1212960:intron 55.0%
TTCTGTTCCTGCTGCGGTTC+GGG + chr8_1:72991792-72991811 Msa1212960:intron 55.0%
ACTTAAACCCGAACCGCAGC+AGG - chr8_1:72991802-72991821 Msa1212970:intron 55.0%
ACGCACTAAACCCGCTAAGG+AGG - chr8_1:72992153-72992172 Msa1212970:intron 55.0%
ACTCACATGCTTGTCTGGGG+AGG + chr8_1:72992542-72992561 Msa1212960:CDS 55.0%
! ATGCTTGTCTGGGGAGGTGT+TGG + chr8_1:72992548-72992567 Msa1212960:CDS 55.0%
GGTAGGGAGAGATGGGAGGT+TGG - chr8_1:72990849-72990868 Msa1212970:three_prime_UTR 60.0%
GAAGGGGAGGTAGGGAGAGA+TGG - chr8_1:72990857-72990876 Msa1212970:three_prime_UTR 60.0%
!! CGAATGGAGTTGGTGTCCCG+TGG + chr8_1:72991685-72991704 Msa1212960:intron 60.0%
AGCTGGTGCGGTTTCCCTAC+TGG + chr8_1:72991761-72991780 Msa1212960:intron 60.0%
! TTTTCCAGCGGTGGCTGTGC+TGG + chr8_1:72991966-72991985 Msa1212960:intron 60.0%
!! GGGAGGTGTTGGTACTCGCA+TGG + chr8_1:72992559-72992578 Msa1212960:CDS 60.0%
GGTAGGGAGAGATGGGAGGT+TGG - chr8_1:72990849-72990868 Msa1212970:three_prime_UTR 60.0%
GAAGGGGAGGTAGGGAGAGA+TGG - chr8_1:72990857-72990876 Msa1212970:three_prime_UTR 60.0%
!! CGAATGGAGTTGGTGTCCCG+TGG + chr8_1:72991685-72991704 Msa1212960:intron 60.0%
AGCTGGTGCGGTTTCCCTAC+TGG + chr8_1:72991761-72991780 Msa1212960:intron 60.0%
! TTTTCCAGCGGTGGCTGTGC+TGG + chr8_1:72991966-72991985 Msa1212960:intron 60.0%
!! GGGAGGTGTTGGTACTCGCA+TGG + chr8_1:72992559-72992578 Msa1212960:CDS 60.0%
GGGAGGTAGGGAGAGATGGG+AGG - chr8_1:72990853-72990872 Msa1212970:three_prime_UTR 65.0%
GGGAGGTAGGGAGAGATGGG+AGG - chr8_1:72990853-72990872 Msa1212970:three_prime_UTR 65.0%
TCCAGCGGTGGCTGTGCTGG+AGG + chr8_1:72991969-72991988 Msa1212960:intron 70.0%
CCAGCGGTGGCTGTGCTGGA+GGG + chr8_1:72991970-72991989 Msa1212960:intron 70.0%
TCCAGCGGTGGCTGTGCTGG+AGG + chr8_1:72991969-72991988 Msa1212960:intron 70.0%
CCAGCGGTGGCTGTGCTGGA+GGG + chr8_1:72991970-72991989 Msa1212960:intron 70.0%
CCCTCCAGCACAGCCACCGC+TGG - chr8_1:72991973-72991992 Msa1212970:intron 75.0%
CCCTCCAGCACAGCCACCGC+TGG - chr8_1:72991973-72991992 Msa1212970:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 72990757 72992911 72990757 ID=Msa1212960;Name=Msa1212960
chr8_1 mRNA 72990757 72992911 72990757 ID=Msa1212960-mRNA-1;Parent=Msa1212960;Name=Msa1212960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=5|0.5|0.33|1|1|1|3|0|230
chr8_1 exon 72990757 72991265 72990757 ID=Msa1212960-mRNA-1:exon:24728;Parent=Msa1212960-mRNA-1
chr8_1 exon 72992470 72992635 72992470 ID=Msa1212960-mRNA-1:exon:24729;Parent=Msa1212960-mRNA-1
chr8_1 exon 72992889 72992911 72992889 ID=Msa1212960-mRNA-1:exon:24730;Parent=Msa1212960-mRNA-1
chr8_1 five_prime_UTR 72990757 72990761 72990757 ID=Msa1212960-mRNA-1:five_prime_utr;Parent=Msa1212960-mRNA-1
chr8_1 CDS 72990762 72991265 72990762 ID=Msa1212960-mRNA-1:cds;Parent=Msa1212960-mRNA-1
chr8_1 CDS 72992470 72992635 72992470 ID=Msa1212960-mRNA-1:cds;Parent=Msa1212960-mRNA-1
chr8_1 CDS 72992889 72992911 72992889 ID=Msa1212960-mRNA-1:cds;Parent=Msa1212960-mRNA-1
Gene Sequence

>Msa1212960

ATGAAGCTAAGCCAGAACCTTAATTTACAAACCAACCCACCAATCCAAACCAGACTTCATCATCTCCCTCTTTCACCAAATATTCCAACCTCCCATCTCTCCCTACCTCCCCTTCAAAAGAACAGATTCAAATGCATTACTGTAAAAGCTACCAACGAATCAATTTCATTGCCAACCATGTCCGAAATACTAGAATCATCAAGAGGACAAAAACTCGACCTTCAGCTCCAAACTCTAGGACCCTTTTTCAGAATCACAGCAAGGAGCTTGGTAACAGATAACGAGCTTGGAAAAGCCGAGGGATTGGTAAGAATGTGGTTTGGAAGAGGTAATATTCTTCACTTGGATTCTATCAAACTACAAAGAGAAACACTTGGAATGGAGAAATCAATATTTGGAATTGGTTTGTATATTGGAGCTGTTGCTATTAGACATGGATATGATTGTGGTTGTAAATCAGCTCAGTTACTTGCTATCAATGATTCTGATCTTTACCATTCTAAGTTGATTAGGTTCTACACAAGACTTGGGTTTAAACCTGTGTATGAAGTGACTGGTTCATCTGTTGGGGATCTAACTCACATGCTTGTCTGGGGAGGTGTTGGTACTCGCATGGATGCCAGTGTTGAAGAACTTATGATAAAATGGTGTAAAAGATTTAAAAAAACAAGTGTACGTGAAATACCGAAGTAG

Protein sequence

>Msa1212960

MKLSQNLNLQTNPPIQTRLHHLPLSPNIPTSHLSLPPLQKNRFKCITVKATNESISLPTMSEILESSRGQKLDLQLQTLGPFFRITARSLVTDNELGKAEGLVRMWFGRGNILHLDSIKLQRETLGMEKSIFGIGLYIGAVAIRHGYDCGCKSAQLLAINDSDLYHSKLIRFYTRLGFKPVYEVTGSSVGDLTHMLVWGGVGTRMDASVEELMIKWCKRFKKTSVREIPK*