AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576320 MtrunA17_Chr8g0382281 97.143 315 9 0 1 315 1 315 0.0 622
Msa0576320 MtrunA17_Chr5g0425971 66.032 315 107 0 1 315 1 315 3.97e-154 434
Msa0576320 MtrunA17_Chr8g0352611 51.429 315 151 2 1 315 1 313 1.75e-104 308
Msa0576320 MtrunA17_Chr3g0083921 50.476 315 155 1 1 315 1 314 3.66e-103 304
Msa0576320 MtrunA17_Chr3g0083901 49.524 315 157 2 1 314 1 314 2.93e-102 302
Msa0576320 MtrunA17_Chr8g0352621 51.118 313 149 2 1 312 1 310 5.76e-102 301
Msa0576320 MtrunA17_Chr8g0352591 48.397 312 149 2 1 312 1 300 2.01e-92 276
Msa0576320 MtrunA17_Chr2g0293441 43.234 303 172 0 12 314 11 313 4.81e-89 268
Msa0576320 MtrunA17_Chr8g0352571 42.857 315 177 1 1 312 1 315 3.98e-82 251
Msa0576320 MtrunA17_Chr8g0393281 37.855 317 193 3 1 315 1 315 5.71e-72 225
Msa0576320 MtrunA17_Chr1g0162071 36.076 316 198 3 1 314 1 314 6.73e-67 212
Msa0576320 MtrunA17_Chr6g0479421 37.580 314 192 3 1 312 1 312 1.23e-64 206
Msa0576320 MtrunA17_Chr6g0479411 35.783 313 199 2 1 312 28 339 1.82e-64 206
Msa0576320 MtrunA17_Chr1g0210981 36.624 314 195 3 1 312 1 312 2.22e-62 200
Msa0576320 MtrunA17_Chr6g0479391 36.943 314 194 3 1 312 1 312 3.93e-56 184
Msa0576320 MtrunA17_Chr8g0352581 36.792 318 172 8 14 312 4 311 2.81e-50 169
Msa0576320 MtrunA17_Chr6g0461141 26.277 274 194 5 45 310 34 307 8.30e-23 96.7
Msa0576320 MtrunA17_Chr3g0084021 56.061 66 29 0 145 210 5 70 1.41e-17 75.9
Msa0576320 MtrunA17_Chr3g0084011 51.351 74 35 1 1 74 1 73 1.47e-17 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576320 AT5G65020.1 71.338 314 89 1 1 313 1 314 4.95e-169 472
Msa0576320 AT5G10230.1 70.701 314 92 0 1 314 1 314 2.30e-166 465
Msa0576320 AT5G10220.1 68.987 316 96 1 1 314 1 316 3.49e-161 452
Msa0576320 AT5G65020.2 72.318 289 79 1 26 313 11 299 4.50e-156 439
Msa0576320 AT1G35720.1 66.456 316 105 1 1 315 1 316 1.60e-153 432
Msa0576320 AT5G12380.1 51.118 313 152 1 1 313 1 312 4.42e-110 322
Msa0576320 AT2G38760.1 42.138 318 178 2 1 312 1 318 1.42e-82 253
Msa0576320 AT1G68090.1 37.380 313 195 1 1 312 1 313 2.23e-63 203
Msa0576320 AT1G68090.2 37.349 249 151 3 1 244 1 249 1.81e-43 150
Msa0576320 AT2G38750.2 35.526 304 171 6 26 311 2 298 2.56e-43 151
Msa0576320 AT2G38750.1 35.505 307 173 6 23 311 16 315 3.41e-43 151

Find 90 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGAGGGCAGCAATTA+AGG 0.189714 4_1:-80356754 Msa0576320:CDS
AATCACTATAACAATGAGTT+TGG 0.243154 4_1:-80357113 Msa0576320:CDS
ACCCCATAATTCATGGAAAA+AGG 0.279086 4_1:-80356124 Msa0576320:three_prime_UTR
AATATAATCGATCCGTAATA+AGG 0.286006 4_1:+80356254 None:intergenic
TCATATTTCTCTCCTTATTA+CGG 0.324655 4_1:-80356266 Msa0576320:three_prime_UTR
TCGCCATTGTGTTTGTGTTC+AGG 0.345562 4_1:+80358805 None:intergenic
ATCTCCACTTGAACTTCTTA+AGG 0.350377 4_1:-80357740 Msa0576320:CDS
TCATGAGAAGATTGCGGATA+AGG 0.357945 4_1:-80357204 Msa0576320:CDS
GATGTTGCCTATCATACTTC+TGG 0.369007 4_1:-80357673 Msa0576320:CDS
GTAGTCATGGAGTGGCTGTT+TGG 0.374106 4_1:-80356478 Msa0576320:three_prime_UTR
GCAATTGACAAAGACACTTC+TGG 0.392622 4_1:-80356564 Msa0576320:CDS
TACGCATACCCCATAATTCA+TGG 0.395314 4_1:-80356131 Msa0576320:three_prime_UTR
AGTTCCTCAAAATATTTCTC+AGG 0.401647 4_1:+80356720 None:intergenic
TTATTGAGGGCAGCAATTAA+GGG 0.414248 4_1:-80356753 Msa0576320:CDS
ATCACTATAACAATGAGTTT+GGG 0.415323 4_1:-80357112 Msa0576320:CDS
TCTTGATAGTATACAGAATT+CGG 0.419227 4_1:-80356410 Msa0576320:three_prime_UTR
AGCTGTTTCATTATTTAAGA+AGG 0.431198 4_1:+80356290 None:intergenic
GCAGGATTTGGAAACTGATT+CGG 0.447953 4_1:-80356793 Msa0576320:intron
AGTTTATTAAACTTATCTCC+TGG 0.453050 4_1:-80356081 Msa0576320:three_prime_UTR
TGTGGGCATACACCGTTATG+AGG 0.458266 4_1:-80357273 Msa0576320:CDS
TTGTTGTTACAATCCTGATC+AGG 0.458748 4_1:+80357165 None:intergenic
ACAGGATGGGGAACGAATGA+AGG 0.469249 4_1:-80358212 Msa0576320:intron
GATAGGCAACATCTTCTTCA+AGG 0.470858 4_1:+80357683 None:intergenic
ACAATCATGATGACCTGATC+AGG 0.471756 4_1:-80357178 Msa0576320:CDS
CAAAATCACGCTGATGATGA+AGG 0.476971 4_1:+80356442 None:intergenic
GCGAATTGCGGAGGAATACC+AGG 0.479165 4_1:-80356613 Msa0576320:CDS
AACAGCCACTCCATGACTAC+TGG 0.479223 4_1:+80356481 None:intergenic
ATGAATATCTGAAATTATTG+AGG 0.486467 4_1:-80356767 Msa0576320:CDS
AGCTGTGCTGCTGTGGACAT+TGG 0.493673 4_1:-80357854 Msa0576320:CDS
GAAAATTCTCCTTGCACTGA+TGG 0.493991 4_1:-80356532 Msa0576320:CDS
TGAATACTGAAAGCCAATGT+TGG 0.496726 4_1:+80358854 None:intergenic
GGGAAGAAACAGTGTTCCTC+TGG 0.498214 4_1:-80356592 Msa0576320:CDS
GAGGAACACTGTTTCTTCCC+TGG 0.508290 4_1:+80356595 None:intergenic
GAGCTGCATTTCTATGAGCC+AGG 0.520838 4_1:+80358174 None:intergenic
CTTTAAGAAGATCTTCTCCA+TGG 0.522934 4_1:+80358117 None:intergenic
GAATACTGAAAGCCAATGTT+GGG 0.523577 4_1:+80358855 None:intergenic
TGAATATCTGAAATTATTGA+GGG 0.538168 4_1:-80356766 Msa0576320:CDS
TAGGCTGGCTATAAACAAGA+TGG 0.541067 4_1:-80356694 Msa0576320:CDS
AGCCAATGTTGGGAGGGAGC+AGG 0.542457 4_1:+80358865 None:intergenic
AAAATTCTCCTTGCACTGAT+GGG 0.542533 4_1:-80356531 Msa0576320:CDS
AACAGAAAGCTGTGCTGCTG+TGG 0.544066 4_1:-80357861 Msa0576320:intron
AATTGTTCACTGTCTTCTGA+TGG 0.548405 4_1:+80358753 None:intergenic
AAGTTCAAGTGGAGATCTTG+TGG 0.549416 4_1:+80357747 None:intergenic
GATGGAGAAGGAACGTGAGA+GGG 0.549677 4_1:+80358771 None:intergenic
ACTTGAAACAAACACTCCCT+TGG 0.550478 4_1:+80356101 None:intergenic
CTTAATCTGTCCAGTAGTCA+TGG 0.553997 4_1:-80356491 Msa0576320:three_prime_UTR
TCTTGTTTATAGCCAGCCTA+AGG 0.557307 4_1:+80356697 None:intergenic
AGGCTTGATAATATCGATCC+TGG 0.557589 4_1:-80358192 Msa0576320:CDS
ATGAATTATGGGGTATGCGT+AGG 0.559037 4_1:+80356133 None:intergenic
AACCTGCTCCCTCCCAACAT+TGG 0.565034 4_1:-80358867 Msa0576320:five_prime_UTR
GTTCCTCAAAATATTTCTCA+GGG 0.565806 4_1:+80356721 None:intergenic
GCTGCTGTGGACATTGGATC+CGG 0.567043 4_1:-80357848 Msa0576320:CDS
GGGTCTGCGTGTAAGTTTCG+CGG 0.567457 4_1:+80358138 None:intergenic
GATGTCACCAGAAGTATGAT+AGG 0.569427 4_1:+80357666 None:intergenic
CAGAATTCGGTGACTTGCTG+TGG 0.582038 4_1:-80356397 Msa0576320:three_prime_UTR
GGTTGATTTGCAGCGAATTG+CGG 0.585356 4_1:-80356625 Msa0576320:CDS
AAAATCACGCTGATGATGAA+GGG 0.586986 4_1:+80356443 None:intergenic
AAGTGTCTTTGTCAATTGCA+CGG 0.589714 4_1:+80356568 None:intergenic
TACTGAAAGCCAATGTTGGG+AGG 0.589846 4_1:+80358858 None:intergenic
GTGATATGTATGAACTATTG+TGG 0.591619 4_1:-80356363 Msa0576320:three_prime_UTR
TTTAAGAAGATCTTCTCCAT+GGG 0.594102 4_1:+80358118 None:intergenic
TTGTCAATTGCACGGTCCAG+AGG 0.595483 4_1:+80356576 None:intergenic
TCACCTCATCTCCCTCATAA+CGG 0.595788 4_1:+80357261 None:intergenic
TGATGGAGAAGGAACGTGAG+AGG 0.596195 4_1:+80358770 None:intergenic
ATAGGCAACATCTTCTTCAA+GGG 0.598603 4_1:+80357684 None:intergenic
TGATTTGCAGCGAATTGCGG+AGG 0.598869 4_1:-80356622 Msa0576320:CDS
TGAAAATGCTCTTACTAGAG+TGG 0.606160 4_1:-80356664 Msa0576320:CDS
CATCATGTCCCATCAGTGCA+AGG 0.606991 4_1:+80356523 None:intergenic
ATTGCTTCATGAGAAGATTG+CGG 0.611914 4_1:-80357210 Msa0576320:CDS
GTGGGCATACACCGTTATGA+GGG 0.616438 4_1:-80357272 Msa0576320:CDS
GAAACTTACACGCAGACCCA+TGG 0.623172 4_1:-80358134 Msa0576320:CDS
AGGCTGGCTATAAACAAGAT+GGG 0.624496 4_1:-80356693 Msa0576320:CDS
ACTGAAAGCCAATGTTGGGA+GGG 0.625318 4_1:+80358859 None:intergenic
AGATGAGGTGAACATGACAT+TGG 0.629033 4_1:-80357249 Msa0576320:CDS
TAACGGTGTATGCCCACAAG+AGG 0.631350 4_1:+80357278 None:intergenic
CTCAAAATATTTCTCAGGGT+AGG 0.640542 4_1:+80356725 None:intergenic
TCACTGTCTTCTGATGGAGA+AGG 0.641986 4_1:+80358759 None:intergenic
ATGGAGAAGGAACGTGAGAG+GGG 0.642321 4_1:+80358772 None:intergenic
TTTGCCTTAAGAAGTTCAAG+TGG 0.642700 4_1:+80357736 None:intergenic
ACACCGTTATGAGGGAGATG+AGG 0.647772 4_1:-80357264 Msa0576320:CDS
TCTGTCCAGTAGTCATGGAG+TGG 0.655004 4_1:-80356486 Msa0576320:three_prime_UTR
TTCAAACAATTCGATCATCG+TGG 0.667000 4_1:-80357779 Msa0576320:CDS
TACTTCTGGTGACATCCGCA+AGG 0.668178 4_1:-80357659 Msa0576320:intron
AGTGGTGACAACTAGAGCTG+AGG 0.671413 4_1:-80356646 Msa0576320:CDS
GTTTGGGAATGTAATAGACA+AGG 0.682197 4_1:-80357096 Msa0576320:intron
ATCGATCTGTGTGTATAATG+TGG 0.684795 4_1:+80358828 None:intergenic
TGATCAGGATTGTAACAACA+AGG 0.686508 4_1:-80357163 Msa0576320:CDS
CGAATTGCGGAGGAATACCA+GGG 0.703677 4_1:-80356612 Msa0576320:CDS
GAAGACAGTGAACAATTGCG+CGG 0.707759 4_1:-80358747 Msa0576320:CDS
GATCCTGAACACAAACACAA+TGG 0.715353 4_1:-80358808 Msa0576320:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGTTTAAAATTTTGATATA+TGG - chr4_1:80356871-80356890 Msa0576320:intron 10.0%
!!! TAAATAATATGTTTTGAATA+TGG - chr4_1:80358594-80358613 Msa0576320:intron 10.0%
!!! ATTAACTTCCTTTTAATTAA+AGG - chr4_1:80358017-80358036 Msa0576320:intron 15.0%
!!! TTAACTTCCTTTTAATTAAA+GGG - chr4_1:80358018-80358037 Msa0576320:intron 15.0%
!! TGAAATAAAAGTCAAAGAAA+TGG + chr4_1:80356237-80356256 None:intergenic 20.0%
!! CTAATATCTTAATTAGATCA+TGG - chr4_1:80356335-80356354 Msa0576320:three_prime_UTR 20.0%
!!! ATATTTCTAGTTAATGAATG+TGG - chr4_1:80356447-80356466 Msa0576320:three_prime_UTR 20.0%
!! CAAGAAATTAGTAAGTTTAA+GGG + chr4_1:80357302-80357321 None:intergenic 20.0%
!! TCAAGAAATTAGTAAGTTTA+AGG + chr4_1:80357303-80357322 None:intergenic 20.0%
!!! TGTAAATCTTTTCAACTTTA+AGG - chr4_1:80357422-80357441 Msa0576320:intron 20.0%
!! AAAGGTTAAATACATATAAC+TGG + chr4_1:80357541-80357560 None:intergenic 20.0%
!! ACAGAAATAAGAATCATAAA+TGG + chr4_1:80357875-80357894 None:intergenic 20.0%
!! ATATTTCTTGAAGAGAAAAA+TGG + chr4_1:80357963-80357982 None:intergenic 20.0%
!! CTTCATCAATAATATGATTA+TGG + chr4_1:80357995-80358014 None:intergenic 20.0%
!! CTATAATCCCTTTAATTAAA+AGG + chr4_1:80358028-80358047 None:intergenic 20.0%
!!! ATGAATATCTGAAATTATTG+AGG - chr4_1:80358164-80358183 Msa0576320:CDS 20.0%
!!! TGAATATCTGAAATTATTGA+GGG - chr4_1:80358165-80358184 Msa0576320:CDS 20.0%
!! TATTTCCAAAAAATTATTCC+AGG + chr4_1:80358871-80358890 None:intergenic 20.0%
! TAAAAGTCAAAGAAATGGAT+CGG + chr4_1:80356232-80356251 None:intergenic 25.0%
!! TTTTTCCTTTGTGTTTTTCA+TGG - chr4_1:80356638-80356657 Msa0576320:CDS 25.0%
! TCAACAATTGTTAGTGAAAA+TGG + chr4_1:80356945-80356964 None:intergenic 25.0%
! TATATGAATAACCTTGACTA+AGG - chr4_1:80356999-80357018 Msa0576320:intron 25.0%
!!! CAAGGTATTTTCATGTAATA+AGG - chr4_1:80357030-80357049 Msa0576320:intron 25.0%
! AAAATCTTCCAAAATTTACG+TGG - chr4_1:80357399-80357418 Msa0576320:intron 25.0%
!! ATTCTTTTGACATAAATCTG+AGG + chr4_1:80357473-80357492 None:intergenic 25.0%
! GTTAAATACATATAACTGGT+TGG + chr4_1:80357537-80357556 None:intergenic 25.0%
! AACAAAATTTCATCAGACAA+GGG + chr4_1:80357606-80357625 None:intergenic 25.0%
! AAACAAAATTTCATCAGACA+AGG + chr4_1:80357607-80357626 None:intergenic 25.0%
! AATCACTATAACAATGAGTT+TGG - chr4_1:80357818-80357837 Msa0576320:CDS 25.0%
! ATCACTATAACAATGAGTTT+GGG - chr4_1:80357819-80357838 Msa0576320:CDS 25.0%
! TCAATAATATGATTATGGCT+GGG + chr4_1:80357990-80358009 None:intergenic 25.0%
! ATCAATAATATGATTATGGC+TGG + chr4_1:80357991-80358010 None:intergenic 25.0%
! TCAATTTCTTCTGTAGAAAA+AGG - chr4_1:80358062-80358081 Msa0576320:intron 25.0%
!!! AGGATAACCTTTTTTTTACT+AGG - chr4_1:80358082-80358101 Msa0576320:intron 25.0%
!!! GGATAACCTTTTTTTTACTA+GGG - chr4_1:80358083-80358102 Msa0576320:intron 25.0%
! TACAAACCCTAGTAAAAAAA+AGG + chr4_1:80358092-80358111 None:intergenic 25.0%
!! TCTTGATAGTATACAGAATT+CGG - chr4_1:80358521-80358540 Msa0576320:intron 25.0%
!! AGCTGTTTCATTATTTAAGA+AGG + chr4_1:80358644-80358663 None:intergenic 25.0%
! TCATATTTCTCTCCTTATTA+CGG - chr4_1:80358665-80358684 Msa0576320:intron 25.0%
! AATATAATCGATCCGTAATA+AGG + chr4_1:80358680-80358699 None:intergenic 25.0%
! TTTCATTATTTAAACTCCCT+TGG + chr4_1:80358736-80358755 None:intergenic 25.0%
! TCATATTTCTCTCCTTATTA+CGG - chr4_1:80358665-80358684 Msa0576320:intron 25.0%
! AATATAATCGATCCGTAATA+AGG + chr4_1:80358680-80358699 None:intergenic 25.0%
! AGTTTATTAAACTTATCTCC+TGG - chr4_1:80358850-80358869 Msa0576320:five_prime_UTR 25.0%
!!! TATCTCCTGGAATAATTTTT+TGG - chr4_1:80358863-80358882 Msa0576320:five_prime_UTR 25.0%
AATAAGCAGTGCTCAAATAA+GGG - chr4_1:80356608-80356627 Msa0576320:CDS 30.0%
AAACAACAATATGAATGGAC+AGG + chr4_1:80356684-80356703 None:intergenic 30.0%
!! GTCCATTCATATTGTTGTTT+CGG - chr4_1:80356684-80356703 Msa0576320:CDS 30.0%
!! TTTCGGTGACATATTTTTAC+AGG - chr4_1:80356701-80356720 Msa0576320:CDS 30.0%
!! GTGACATATTTTTACAGGAT+GGG - chr4_1:80356706-80356725 Msa0576320:CDS 30.0%
!! TGACATATTTTTACAGGATG+GGG - chr4_1:80356707-80356726 Msa0576320:CDS 30.0%
TTTAAGAAGATCTTCTCCAT+GGG + chr4_1:80356816-80356835 None:intergenic 30.0%
!! AGAACTTTCAAGTGATTTTG+AGG - chr4_1:80356847-80356866 Msa0576320:intron 30.0%
!!! CAACATTTTAGTTGCTTGAT+TGG + chr4_1:80357130-80357149 None:intergenic 30.0%
! GATTTACACCACGTAAATTT+TGG + chr4_1:80357410-80357429 None:intergenic 30.0%
GGCATTCTTCTACTAAATAA+AGG + chr4_1:80357452-80357471 None:intergenic 30.0%
GCATAAGCATAAACATGAAA+AGG + chr4_1:80357559-80357578 None:intergenic 30.0%
ACAAAATTTCATCAGACAAG+GGG + chr4_1:80357605-80357624 None:intergenic 30.0%
! TGATTCTTCTCAAAAGCTTT+TGG - chr4_1:80357628-80357647 Msa0576320:intron 30.0%
! TAGACAAGGTATGAATGTTT+TGG - chr4_1:80357849-80357868 Msa0576320:CDS 30.0%
GTTCCTCAAAATATTTCTCA+GGG + chr4_1:80358213-80358232 None:intergenic 30.0%
AGTTCCTCAAAATATTTCTC+AGG + chr4_1:80358214-80358233 None:intergenic 30.0%
!! AATATTTTGAGGAACTCCTT+AGG - chr4_1:80358218-80358237 Msa0576320:intron 30.0%
!!! TCTAGTAAGAGCATTTTCAT+CGG + chr4_1:80358266-80358285 None:intergenic 30.0%
GTGATATGTATGAACTATTG+TGG - chr4_1:80358568-80358587 Msa0576320:intron 30.0%
GAATACTGAAAGCCAATGTT+GGG + chr4_1:80356079-80356098 None:intergenic 35.0%
TGAATACTGAAAGCCAATGT+TGG + chr4_1:80356080-80356099 None:intergenic 35.0%
ATCGATCTGTGTGTATAATG+TGG + chr4_1:80356106-80356125 None:intergenic 35.0%
AATTGTTCACTGTCTTCTGA+TGG + chr4_1:80356181-80356200 None:intergenic 35.0%
TTTGGACTACATGAAGAGAT+CGG + chr4_1:80356526-80356545 None:intergenic 35.0%
GATTCATCGTGATCATGATT+TGG + chr4_1:80356544-80356563 None:intergenic 35.0%
GAATAAGCAGTGCTCAAATA+AGG - chr4_1:80356607-80356626 Msa0576320:CDS 35.0%
TCATGCCATGAAAAACACAA+AGG + chr4_1:80356646-80356665 None:intergenic 35.0%
CACCGAAACAACAATATGAA+TGG + chr4_1:80356689-80356708 None:intergenic 35.0%
!! GGTGACATATTTTTACAGGA+TGG - chr4_1:80356705-80356724 Msa0576320:CDS 35.0%
! CTTTAAGAAGATCTTCTCCA+TGG + chr4_1:80356817-80356836 None:intergenic 35.0%
TTGACATGAAACCTTAGTCA+AGG + chr4_1:80357013-80357032 None:intergenic 35.0%
TTGACTAAGGTTTCATGTCA+AGG - chr4_1:80357012-80357031 Msa0576320:intron 35.0%
TTCAAACAATTCGATCATCG+TGG - chr4_1:80357152-80357171 Msa0576320:CDS 35.0%
ATCTCCACTTGAACTTCTTA+AGG - chr4_1:80357191-80357210 Msa0576320:CDS 35.0%
TTTGCCTTAAGAAGTTCAAG+TGG + chr4_1:80357198-80357217 None:intergenic 35.0%
!! CTTCAAGGGACTTTTTGAAA+CGG + chr4_1:80357236-80357255 None:intergenic 35.0%
ATAGGCAACATCTTCTTCAA+GGG + chr4_1:80357250-80357269 None:intergenic 35.0%
AAGTTTAAGGGTTTACCTTG+CGG + chr4_1:80357290-80357309 None:intergenic 35.0%
TTCCAAAAATACACCCATCT+TGG - chr4_1:80357500-80357519 Msa0576320:intron 35.0%
AAAAATACACCCATCTTGGT+GGG - chr4_1:80357504-80357523 Msa0576320:intron 35.0%
AAAAACGTCAGATCAAGACA+TGG + chr4_1:80357581-80357600 None:intergenic 35.0%
CAAAATTTCATCAGACAAGG+GGG + chr4_1:80357604-80357623 None:intergenic 35.0%
ATTGCTTCATGAGAAGATTG+CGG - chr4_1:80357721-80357740 Msa0576320:CDS 35.0%
! TTGTTGTTACAATCCTGATC+AGG + chr4_1:80357769-80357788 None:intergenic 35.0%
TGATCAGGATTGTAACAACA+AGG - chr4_1:80357768-80357787 Msa0576320:CDS 35.0%
GTTTGGGAATGTAATAGACA+AGG - chr4_1:80357835-80357854 Msa0576320:CDS 35.0%
ATTATTGAGGGCAGCAATTA+AGG - chr4_1:80358177-80358196 Msa0576320:CDS 35.0%
TTATTGAGGGCAGCAATTAA+GGG - chr4_1:80358178-80358197 Msa0576320:CDS 35.0%
CTCAAAATATTTCTCAGGGT+AGG + chr4_1:80358209-80358228 None:intergenic 35.0%
! CTACCCTGAGAAATATTTTG+AGG - chr4_1:80358207-80358226 Msa0576320:CDS 35.0%
TGAAAATGCTCTTACTAGAG+TGG - chr4_1:80358267-80358286 Msa0576320:intron 35.0%
AAGTGTCTTTGTCAATTGCA+CGG + chr4_1:80358366-80358385 None:intergenic 35.0%
! AAAATTCTCCTTGCACTGAT+GGG - chr4_1:80358400-80358419 Msa0576320:intron 35.0%
! AAAATCACGCTGATGATGAA+GGG + chr4_1:80358491-80358510 None:intergenic 35.0%
ACCCCATAATTCATGGAAAA+AGG - chr4_1:80358710-80358729 Msa0576320:intron 35.0%
! GCCTTTTTCCATGAATTATG+GGG + chr4_1:80358714-80358733 None:intergenic 35.0%
! GGCCTTTTTCCATGAATTAT+GGG + chr4_1:80358715-80358734 None:intergenic 35.0%
! TGGCCTTTTTCCATGAATTA+TGG + chr4_1:80358716-80358735 None:intergenic 35.0%
TAATTCATGGAAAAAGGCCA+AGG - chr4_1:80358716-80358735 Msa0576320:intron 35.0%
AATTCATGGAAAAAGGCCAA+GGG - chr4_1:80358717-80358736 Msa0576320:intron 35.0%
ACCCCATAATTCATGGAAAA+AGG - chr4_1:80358710-80358729 Msa0576320:intron 35.0%
! GCCTTTTTCCATGAATTATG+GGG + chr4_1:80358714-80358733 None:intergenic 35.0%
! GGCCTTTTTCCATGAATTAT+GGG + chr4_1:80358715-80358734 None:intergenic 35.0%
! TGGCCTTTTTCCATGAATTA+TGG + chr4_1:80358716-80358735 None:intergenic 35.0%
TAATTCATGGAAAAAGGCCA+AGG - chr4_1:80358716-80358735 Msa0576320:intron 35.0%
AATTCATGGAAAAAGGCCAA+GGG - chr4_1:80358717-80358736 Msa0576320:intron 35.0%
GATCCTGAACACAAACACAA+TGG - chr4_1:80356123-80356142 Msa0576320:three_prime_UTR 40.0%
AGTCAAAGAAATGGATCGGT+AGG + chr4_1:80356228-80356247 None:intergenic 40.0%
ACACTCCTATGTTACGTGTT+TGG - chr4_1:80356381-80356400 Msa0576320:three_prime_UTR 40.0%
TCCTATGTTACGTGTTTGGT+TGG - chr4_1:80356385-80356404 Msa0576320:three_prime_UTR 40.0%
ACCAACCAAACACGTAACAT+AGG + chr4_1:80356389-80356408 None:intergenic 40.0%
! AGGCTTGATAATATCGATCC+TGG - chr4_1:80356739-80356758 Msa0576320:CDS 40.0%
AAGTTCAAGTGGAGATCTTG+TGG + chr4_1:80357187-80357206 None:intergenic 40.0%
GATAGGCAACATCTTCTTCA+AGG + chr4_1:80357251-80357270 None:intergenic 40.0%
GATGTTGCCTATCATACTTC+TGG - chr4_1:80357258-80357277 Msa0576320:CDS 40.0%
! GATGTCACCAGAAGTATGAT+AGG + chr4_1:80357268-80357287 None:intergenic 40.0%
! CACCAAGATGGGTGTATTTT+TGG + chr4_1:80357505-80357524 None:intergenic 40.0%
CAAAAATACACCCATCTTGG+TGG - chr4_1:80357503-80357522 Msa0576320:intron 40.0%
!!! AAAGCTTTTGGTTCCTCTTG+TGG - chr4_1:80357640-80357659 Msa0576320:intron 40.0%
!!! AAGCTTTTGGTTCCTCTTGT+GGG - chr4_1:80357641-80357660 Msa0576320:intron 40.0%
AGATGAGGTGAACATGACAT+TGG - chr4_1:80357682-80357701 Msa0576320:CDS 40.0%
TCATGAGAAGATTGCGGATA+AGG - chr4_1:80357727-80357746 Msa0576320:CDS 40.0%
ACAATCATGATGACCTGATC+AGG - chr4_1:80357753-80357772 Msa0576320:CDS 40.0%
! ATTAGATCTGCCCTTTTGCT+GGG + chr4_1:80357909-80357928 None:intergenic 40.0%
! TATTAGATCTGCCCTTTTGC+TGG + chr4_1:80357910-80357929 None:intergenic 40.0%
GCAGGATTTGGAAACTGATT+CGG - chr4_1:80358138-80358157 Msa0576320:CDS 40.0%
! TCTTGTTTATAGCCAGCCTA+AGG + chr4_1:80358237-80358256 None:intergenic 40.0%
! TAGGCTGGCTATAAACAAGA+TGG - chr4_1:80358237-80358256 Msa0576320:intron 40.0%
! AGGCTGGCTATAAACAAGAT+GGG - chr4_1:80358238-80358257 Msa0576320:intron 40.0%
GCAATTGACAAAGACACTTC+TGG - chr4_1:80358367-80358386 Msa0576320:intron 40.0%
GAAAATTCTCCTTGCACTGA+TGG - chr4_1:80358399-80358418 Msa0576320:intron 40.0%
CTTAATCTGTCCAGTAGTCA+TGG - chr4_1:80358440-80358459 Msa0576320:intron 40.0%
! CAAAATCACGCTGATGATGA+AGG + chr4_1:80358492-80358511 None:intergenic 40.0%
ATGAATTATGGGGTATGCGT+AGG + chr4_1:80358704-80358723 None:intergenic 40.0%
TACGCATACCCCATAATTCA+TGG - chr4_1:80358703-80358722 Msa0576320:intron 40.0%
ATGAATTATGGGGTATGCGT+AGG + chr4_1:80358704-80358723 None:intergenic 40.0%
TACGCATACCCCATAATTCA+TGG - chr4_1:80358703-80358722 Msa0576320:intron 40.0%
ACTTGAAACAAACACTCCCT+TGG + chr4_1:80358833-80358852 None:intergenic 40.0%
ACTGAAAGCCAATGTTGGGA+GGG + chr4_1:80356075-80356094 None:intergenic 45.0%
TACTGAAAGCCAATGTTGGG+AGG + chr4_1:80356076-80356095 None:intergenic 45.0%
TCGCCATTGTGTTTGTGTTC+AGG + chr4_1:80356129-80356148 None:intergenic 45.0%
TCACTGTCTTCTGATGGAGA+AGG + chr4_1:80356175-80356194 None:intergenic 45.0%
GAAGACAGTGAACAATTGCG+CGG - chr4_1:80356184-80356203 Msa0576320:intron 45.0%
GGCTAAAAATGCATCACGCT+CGG + chr4_1:80357109-80357128 None:intergenic 45.0%
TCACCTCATCTCCCTCATAA+CGG + chr4_1:80357673-80357692 None:intergenic 45.0%
TTGCAACACTCCCAGCAAAA+GGG - chr4_1:80357896-80357915 Msa0576320:intron 45.0%
TCGAACTAACGTTGAGCTTC+TGG - chr4_1:80358113-80358132 Msa0576320:CDS 45.0%
!! TTTTGAGGAACTCCTTAGGC+TGG - chr4_1:80358222-80358241 Msa0576320:intron 45.0%
!! GGTTGATTTGCAGCGAATTG+CGG - chr4_1:80358306-80358325 Msa0576320:intron 45.0%
! TCATCAGCGTGATTTTGCTG+CGG - chr4_1:80358495-80358514 Msa0576320:intron 45.0%
!!! ATTTTTATTATTATTACTTT+TGG - chr4_1:80356299-80356318 Msa0576320:three_prime_UTR 5.0%
ATGGAGAAGGAACGTGAGAG+GGG + chr4_1:80356162-80356181 None:intergenic 50.0%
GATGGAGAAGGAACGTGAGA+GGG + chr4_1:80356163-80356182 None:intergenic 50.0%
TGATGGAGAAGGAACGTGAG+AGG + chr4_1:80356164-80356183 None:intergenic 50.0%
! CAATTGCGCGGTGCTTTTCA+AGG - chr4_1:80356196-80356215 Msa0576320:intron 50.0%
ACAGGATGGGGAACGAATGA+AGG - chr4_1:80356719-80356738 Msa0576320:CDS 50.0%
GAGCTGCATTTCTATGAGCC+AGG + chr4_1:80356760-80356779 None:intergenic 50.0%
GAAACTTACACGCAGACCCA+TGG - chr4_1:80356797-80356816 Msa0576320:intron 50.0%
! AACAGAAAGCTGTGCTGCTG+TGG - chr4_1:80357070-80357089 Msa0576320:intron 50.0%
AAAAATGCATCACGCTCGGC+CGG + chr4_1:80357105-80357124 None:intergenic 50.0%
TACTTCTGGTGACATCCGCA+AGG - chr4_1:80357272-80357291 Msa0576320:CDS 50.0%
AATACACCCATCTTGGTGGG+TGG - chr4_1:80357507-80357526 Msa0576320:intron 50.0%
TAACGGTGTATGCCCACAAG+AGG + chr4_1:80357656-80357675 None:intergenic 50.0%
TGTGGGCATACACCGTTATG+AGG - chr4_1:80357658-80357677 Msa0576320:intron 50.0%
GTGGGCATACACCGTTATGA+GGG - chr4_1:80357659-80357678 Msa0576320:intron 50.0%
ACACCGTTATGAGGGAGATG+AGG - chr4_1:80357667-80357686 Msa0576320:CDS 50.0%
GTTGCAACACTCCCAGCAAA+AGG - chr4_1:80357895-80357914 Msa0576320:intron 50.0%
AGTGGTGACAACTAGAGCTG+AGG - chr4_1:80358285-80358304 Msa0576320:intron 50.0%
! TGATTTGCAGCGAATTGCGG+AGG - chr4_1:80358309-80358328 Msa0576320:intron 50.0%
CGAATTGCGGAGGAATACCA+GGG - chr4_1:80358319-80358338 Msa0576320:intron 50.0%
! GAGGAACACTGTTTCTTCCC+TGG + chr4_1:80358339-80358358 None:intergenic 50.0%
GGGAAGAAACAGTGTTCCTC+TGG - chr4_1:80358339-80358358 Msa0576320:intron 50.0%
TTGTCAATTGCACGGTCCAG+AGG + chr4_1:80358358-80358377 None:intergenic 50.0%
CATCATGTCCCATCAGTGCA+AGG + chr4_1:80358411-80358430 None:intergenic 50.0%
TCTGTCCAGTAGTCATGGAG+TGG - chr4_1:80358445-80358464 Msa0576320:intron 50.0%
AACAGCCACTCCATGACTAC+TGG + chr4_1:80358453-80358472 None:intergenic 50.0%
GTAGTCATGGAGTGGCTGTT+TGG - chr4_1:80358453-80358472 Msa0576320:intron 50.0%
!! CAGAATTCGGTGACTTGCTG+TGG - chr4_1:80358534-80358553 Msa0576320:intron 50.0%
AACCTGCTCCCTCCCAACAT+TGG - chr4_1:80356064-80356083 Msa0576320:three_prime_UTR 55.0%
GGGTCTGCGTGTAAGTTTCG+CGG + chr4_1:80356796-80356815 None:intergenic 55.0%
! AGCTGTGCTGCTGTGGACAT+TGG - chr4_1:80357077-80357096 Msa0576320:intron 55.0%
GCTGCTGTGGACATTGGATC+CGG - chr4_1:80357083-80357102 Msa0576320:intron 55.0%
GGCTATCCACCCACCAAGAT+GGG + chr4_1:80357516-80357535 None:intergenic 55.0%
TGGCTATCCACCCACCAAGA+TGG + chr4_1:80357517-80357536 None:intergenic 55.0%
! AACGTTGAGCTTCTGGCTGC+AGG - chr4_1:80358120-80358139 Msa0576320:CDS 55.0%
! GAGCTTCTGGCTGCAGGATT+TGG - chr4_1:80358126-80358145 Msa0576320:CDS 55.0%
GCGAATTGCGGAGGAATACC+AGG - chr4_1:80358318-80358337 Msa0576320:intron 55.0%
AGCCAATGTTGGGAGGGAGC+AGG + chr4_1:80356069-80356088 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80356055 80358898 80356055 ID=Msa0576320;Name=Msa0576320
chr4_1 mRNA 80356055 80358898 80356055 ID=Msa0576320-mRNA-1;Parent=Msa0576320;Name=Msa0576320-mRNA-1;_AED=0.05;_eAED=0.05;_QI=87|1|1|1|0.8|0.66|6|366|315
chr4_1 exon 80356055 80356168 80356055 ID=Msa0576320-mRNA-1:exon:28698;Parent=Msa0576320-mRNA-1
chr4_1 exon 80356266 80356811 80356266 ID=Msa0576320-mRNA-1:exon:28697;Parent=Msa0576320-mRNA-1
chr4_1 exon 80357097 80357309 80357097 ID=Msa0576320-mRNA-1:exon:28696;Parent=Msa0576320-mRNA-1
chr4_1 exon 80357660 80357878 80357660 ID=Msa0576320-mRNA-1:exon:28695;Parent=Msa0576320-mRNA-1
chr4_1 exon 80358085 80358230 80358085 ID=Msa0576320-mRNA-1:exon:28694;Parent=Msa0576320-mRNA-1
chr4_1 exon 80358736 80358898 80358736 ID=Msa0576320-mRNA-1:exon:28693;Parent=Msa0576320-mRNA-1
chr4_1 five_prime_UTR 80358812 80358898 80358812 ID=Msa0576320-mRNA-1:five_prime_utr;Parent=Msa0576320-mRNA-1
chr4_1 CDS 80358736 80358811 80358736 ID=Msa0576320-mRNA-1:cds;Parent=Msa0576320-mRNA-1
chr4_1 CDS 80358085 80358230 80358085 ID=Msa0576320-mRNA-1:cds;Parent=Msa0576320-mRNA-1
chr4_1 CDS 80357660 80357878 80357660 ID=Msa0576320-mRNA-1:cds;Parent=Msa0576320-mRNA-1
chr4_1 CDS 80357097 80357309 80357097 ID=Msa0576320-mRNA-1:cds;Parent=Msa0576320-mRNA-1
chr4_1 CDS 80356518 80356811 80356518 ID=Msa0576320-mRNA-1:cds;Parent=Msa0576320-mRNA-1
chr4_1 three_prime_UTR 80356266 80356517 80356266 ID=Msa0576320-mRNA-1:three_prime_utr;Parent=Msa0576320-mRNA-1
chr4_1 three_prime_UTR 80356055 80356168 80356055 ID=Msa0576320-mRNA-1:three_prime_utr;Parent=Msa0576320-mRNA-1
Gene Sequence

>Msa0576320

ATGGCGACATTGAAGATCCCCTCTCACGTTCCTTCTCCATCAGAAGACAGTGAACAATTGCGCGGTGCTTTTCAAGGATGGGGAACGAATGAAGGCTTGATAATATCGATCCTGGCTCATAGAAATGCAGCTCAGCGTAAGTCGATCCGCGAAACTTACACGCAGACCCATGGAGAAGATCTTCTTAAAGATCTTGACAAAGAACTTTCAAGTGATTTTGAGAAAGCTGTGCTGCTGTGGACATTGGATCCGGCCGAGCGTGATGCATTTTTAGCCAATCAAGCAACTAAAATGTTGACTTCAAACAATTCGATCATCGTGGAAATTGCTTCCACAAGATCTCCACTTGAACTTCTTAAGGCAAAGCAAGCATATCAAGTCCGTTTCAAAAAGTCCCTTGAAGAAGATGTTGCCTATCATACTTCTGGTGACATCCGCAAGCTTTTGGTTCCTCTTGTGGGCATACACCGTTATGAGGGAGATGAGGTGAACATGACATTGGCAAAATCTGAAGCTAAATTGCTTCATGAGAAGATTGCGGATAAGGCTTACAATCATGATGACCTGATCAGGATTGTAACAACAAGGAGTAAAGCGCAATTAAATGCAACTTTGAATCACTATAACAATGAGTTTGGGAATGTAATAGACAAGGATTTGGAAACTGATTCGGATGATGAATATCTGAAATTATTGAGGGCAGCAATTAAGGGCTTGACCTACCCTGAGAAATATTTTGAGGAACTCCTTAGGCTGGCTATAAACAAGATGGGAACCGATGAAAATGCTCTTACTAGAGTGGTGACAACTAGAGCTGAGGTTGATTTGCAGCGAATTGCGGAGGAATACCAGGGAAGAAACAGTGTTCCTCTGGACCGTGCAATTGACAAAGACACTTCTGGAGATTATCAGAAAATTCTCCTTGCACTGATGGGACATGATGAGTAG

Protein sequence

>Msa0576320

MATLKIPSHVPSPSEDSEQLRGAFQGWGTNEGLIISILAHRNAAQRKSIRETYTQTHGEDLLKDLDKELSSDFEKAVLLWTLDPAERDAFLANQATKMLTSNNSIIVEIASTRSPLELLKAKQAYQVRFKKSLEEDVAYHTSGDIRKLLVPLVGIHRYEGDEVNMTLAKSEAKLLHEKIADKAYNHDDLIRIVTTRSKAQLNATLNHYNNEFGNVIDKDLETDSDDEYLKLLRAAIKGLTYPEKYFEELLRLAINKMGTDENALTRVVTTRAEVDLQRIAEEYQGRNSVPLDRAIDKDTSGDYQKILLALMGHDE*