AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0604190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604190 MtrunA17_Chr4g0033391 83.489 321 27 4 1 320 1 296 0.0 523
Msa0604190 MtrunA17_Chr4g0033281 89.062 320 16 3 1 320 1 301 0.0 522
Msa0604190 MtrunA17_Chr4g0033291 82.919 322 35 4 1 320 1 304 0.0 506
Msa0604190 MtrunA17_Chr2g0307131 65.143 350 73 7 1 320 1 331 6.54e-140 400
Msa0604190 MtrunA17_Chr6g0468491 65.909 308 76 8 23 320 1 289 3.07e-130 374
Msa0604190 MtrunA17_Chr2g0307141 63.429 350 83 7 1 320 1 335 1.79e-129 374
Msa0604190 MtrunA17_Chr6g0468461 57.225 346 91 9 1 322 1 313 2.27e-112 330
Msa0604190 MtrunA17_Chr7g0225901 57.655 307 64 7 23 325 1 245 2.77e-105 308
Msa0604190 MtrunA17_Chr4g0054581 53.719 363 116 8 1 320 1 354 2.78e-102 305
Msa0604190 MtrunA17_Chr4g0054621 47.246 345 129 11 1 320 1 317 1.33e-81 251
Msa0604190 MtrunA17_Chr5g0400621 44.062 320 133 13 17 320 20 309 6.72e-58 190
Msa0604190 MtrunA17_Chr5g0400641 54.430 158 53 5 174 320 1 150 1.06e-41 142
Msa0604190 MtrunA17_Chr4g0054561 39.344 244 123 7 97 320 67 305 3.48e-40 143
Msa0604190 MtrunA17_Chr4g0054551 38.934 244 124 7 97 320 67 305 1.05e-39 142
Msa0604190 MtrunA17_Chr5g0400661 34.940 332 168 11 13 320 7 314 2.83e-39 141
Msa0604190 MtrunA17_Chr2g0280161 43.850 187 94 3 138 320 151 330 2.02e-37 137
Msa0604190 MtrunA17_Chr2g0333621 40.183 219 115 5 109 320 82 291 2.33e-37 135
Msa0604190 MtrunA17_Chr2g0333641 36.981 265 143 8 60 320 43 287 5.21e-37 134
Msa0604190 MtrunA17_Chr4g0049331 37.603 242 131 6 92 320 53 287 1.80e-36 133
Msa0604190 MtrunA17_Chr8g0336681 39.013 223 116 5 109 320 102 315 2.13e-36 134
Msa0604190 MtrunA17_Chr5g0400671 42.458 179 98 2 146 320 126 303 6.52e-36 132
Msa0604190 MtrunA17_Chr4g0054571 49.390 164 71 4 168 320 147 309 1.60e-35 131
Msa0604190 MtrunA17_Chr4g0002801 43.275 171 82 5 163 320 142 310 4.57e-35 130
Msa0604190 MtrunA17_Chr4g0002781 40.107 187 102 3 142 320 145 329 6.45e-35 130
Msa0604190 MtrunA17_Chr7g0249811 38.220 191 109 3 130 320 127 308 5.61e-31 119
Msa0604190 MtrunA17_Chr2g0333611 39.521 167 92 5 160 320 32 195 1.85e-29 112
Msa0604190 MtrunA17_Chr2g0333541 43.787 169 86 4 160 320 81 248 9.80e-29 112
Msa0604190 MtrunA17_Chr1g0185621 32.394 142 85 2 171 301 475 616 1.14e-17 84.0
Msa0604190 MtrunA17_Chr8g0366751 32.143 168 88 3 162 304 443 609 1.56e-17 83.6
Msa0604190 MtrunA17_Chr8g0346161 29.570 186 116 5 143 321 263 440 1.14e-16 80.5
Msa0604190 MtrunA17_Chr5g0411341 31.138 167 97 3 156 304 474 640 7.68e-16 78.6
Msa0604190 MtrunA17_Chr7g0233441 34.328 134 67 2 194 320 57 176 1.01e-15 74.7
Msa0604190 MtrunA17_Chr4g0002831 33.775 151 86 5 173 320 45 184 1.41e-15 74.3
Msa0604190 MtrunA17_Chr8g0365711 26.596 188 118 5 142 317 219 398 4.05e-15 75.9
Msa0604190 MtrunA17_Chr8g0346151 30.921 152 71 5 155 277 246 392 1.38e-14 74.3
Msa0604190 MtrunA17_Chr7g0275821 30.323 155 99 2 167 317 244 393 2.04e-14 73.6
Msa0604190 MtrunA17_Chr4g0002851 34.722 144 76 5 178 320 50 176 4.00e-14 70.1
Msa0604190 MtrunA17_Chr3g0131691 27.485 171 111 2 157 314 284 454 4.17e-13 69.7
Msa0604190 MtrunA17_Chr7g0260841 46.575 73 35 1 156 224 336 408 1.42e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604190 AT4G37850.2 47.853 163 75 5 164 319 145 304 7.23e-36 132
Msa0604190 AT4G37850.1 47.853 163 75 5 164 319 145 304 7.23e-36 132
Msa0604190 AT2G22760.2 40.476 168 94 2 160 321 108 275 4.81e-34 126
Msa0604190 AT2G22760.1 40.120 167 94 2 160 320 108 274 8.86e-33 123
Msa0604190 AT2G22750.1 45.349 172 84 4 157 319 111 281 9.44e-31 118
Msa0604190 AT2G22750.4 45.349 172 84 4 157 319 139 309 9.77e-31 119
Msa0604190 AT2G22750.2 45.349 172 84 4 157 319 111 281 1.17e-30 118
Msa0604190 AT2G22750.3 45.349 172 84 4 157 319 139 309 1.17e-30 119
Msa0604190 AT2G22750.5 45.349 172 84 4 157 319 135 305 1.25e-30 118
Msa0604190 AT2G22770.1 37.278 169 88 1 170 320 131 299 2.20e-27 109
Msa0604190 AT4G17880.1 32.093 215 110 5 114 304 350 552 1.28e-19 90.1
Msa0604190 AT5G46760.1 34.940 166 86 6 156 301 396 559 1.82e-19 89.7
Msa0604190 AT1G32640.1 33.544 158 97 4 155 304 432 589 1.53e-17 84.0
Msa0604190 AT1G01260.1 37.143 105 63 1 161 262 420 524 8.74e-15 75.5
Msa0604190 AT1G01260.2 37.143 105 63 1 161 262 420 524 8.74e-15 75.5
Msa0604190 AT1G01260.3 37.143 105 63 1 161 262 420 524 8.74e-15 75.5
Msa0604190 AT2G46510.1 41.304 92 44 1 163 244 377 468 1.27e-14 75.1
Msa0604190 AT4G16430.1 39.216 102 58 1 156 253 301 402 3.06e-14 73.6
Msa0604190 AT5G46830.1 41.667 96 42 2 167 248 335 430 4.73e-13 70.1
Msa0604190 AT4G00870.1 34.188 117 65 2 172 279 250 363 8.14e-13 69.3
Msa0604190 AT4G09820.1 30.769 130 73 2 160 289 352 464 8.33e-13 69.3
Msa0604190 AT5G41315.3 29.310 174 92 6 171 316 446 616 2.49e-11 65.1
Msa0604190 AT5G41315.2 29.310 174 92 6 171 316 449 619 2.54e-11 65.1
Msa0604190 AT5G41315.1 29.310 174 92 6 171 316 441 611 2.57e-11 65.1

Find 52 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGTTTAATGGCAATTTAA+AGG 0.241233 4_2:-49419632 None:intergenic
CAGCAGCTGGTTAACTGATT+TGG 0.268145 4_2:+49414891 Msa0604190:CDS
TCTTGTTCCTAACCTTAAAA+AGG 0.274757 4_2:+49415729 Msa0604190:CDS
ATTGATGATACTTTCATTGC+TGG 0.287035 4_2:-49414868 None:intergenic
CATCAGCATCAAGGAAATTC+AGG 0.324134 4_2:-49415255 None:intergenic
CAAGTGGAAGCAAGAGTGTT+AGG 0.334987 4_2:+49419446 Msa0604190:CDS
GATGGTGATGGAGAAATATT+TGG 0.350142 4_2:-49415433 None:intergenic
CTGCAAGAGCAATGAAGGTT+TGG 0.363766 4_2:-49415705 None:intergenic
ATCAGTGTCTCCAACCGAAT+TGG 0.364748 4_2:+49415540 Msa0604190:CDS
GATAGTGTTGAATGTGTTGT+TGG 0.376948 4_2:+49419413 Msa0604190:CDS
TAGGAAAACAAATGTTAATT+CGG 0.382863 4_2:+49419465 Msa0604190:CDS
TTTAATGGCAATTTAAAGGA+TGG 0.405411 4_2:-49419628 None:intergenic
AACAGCAGTGTCTTACCCTT+TGG 0.407087 4_2:+49419563 Msa0604190:CDS
ATCGCTGCATAGGCATGGTT+TGG 0.409003 4_2:-49419369 None:intergenic
ACTCTTGCTTCCACTTGAAA+TGG 0.409697 4_2:-49419440 None:intergenic
TGCAAGAGCAATGAAGGTTT+GGG 0.438568 4_2:-49415704 None:intergenic
CACTCAACAGAAACCTCAAA+AGG 0.444007 4_2:+49415574 Msa0604190:CDS
CAAACAACAATGTTTAACTC+TGG 0.449913 4_2:+49415327 Msa0604190:CDS
GGGGCTTCTAGTTAAAATAA+TGG 0.460369 4_2:+49419508 Msa0604190:CDS
AAAGAGGAGTTAGATGGTGA+TGG 0.464747 4_2:-49415445 None:intergenic
AAACAACAATGTTTAACTCT+GGG 0.467228 4_2:+49415328 Msa0604190:CDS
TTGATGATACTTTCATTGCT+GGG 0.467665 4_2:-49414867 None:intergenic
TGACTTGCTGAGATTATTTG+TGG 0.472239 4_2:-49415359 None:intergenic
GCTGAGATTATTTGTGGAAG+TGG 0.485912 4_2:-49415353 None:intergenic
AAGAGCTGCAAGAGCAATGA+AGG 0.494766 4_2:-49415710 None:intergenic
AACTGAAAAGAGGAGTTAGA+TGG 0.496291 4_2:-49415451 None:intergenic
GCCCCTTGTGCTCCTGACAT+TGG 0.496432 4_2:-49419490 None:intergenic
AATTTCCTTGATGCTGATGT+AGG 0.503309 4_2:+49415259 Msa0604190:CDS
GTTAATTCGGATCCAATGTC+AGG 0.504253 4_2:+49419478 Msa0604190:CDS
GGTAACTACCTGAGCAATGA+TGG 0.506977 4_2:-49419606 None:intergenic
AGCAAAAGGCCTCGTGCTCA+TGG 0.511731 4_2:+49415637 Msa0604190:CDS
TTAATGGCAATTTAAAGGAT+GGG 0.512013 4_2:-49419627 None:intergenic
TTCCTTGATGCTGATGTAGG+AGG 0.513457 4_2:+49415262 Msa0604190:CDS
CGACATTACCATCATTGCTC+AGG 0.544333 4_2:+49419598 Msa0604190:CDS
AGAAACCTCAAAAGGGTCGT+TGG 0.545529 4_2:+49415582 Msa0604190:CDS
TCCTTGATGCTGATGTAGGA+GGG 0.555978 4_2:+49415263 Msa0604190:CDS
GATCCAATGTCAGGAGCACA+AGG 0.570337 4_2:+49419487 Msa0604190:CDS
AAGTATCATCAATCAGCAGC+TGG 0.573007 4_2:+49414878 Msa0604190:CDS
TCTTCATCGCTGCATAGGCA+TGG 0.581383 4_2:-49419374 None:intergenic
AAGAATCTTCATCGCTGCAT+AGG 0.581886 4_2:-49419379 None:intergenic
ACCCTCCTACATCAGCATCA+AGG 0.584158 4_2:-49415264 None:intergenic
TGGTATTTGAAACTGAAAAG+AGG 0.585974 4_2:-49415461 None:intergenic
ACTCAACAGAAACCTCAAAA+GGG 0.587077 4_2:+49415575 Msa0604190:CDS
GTCGAGTGTAGAATCTCCAA+AGG 0.590011 4_2:-49419579 None:intergenic
TCCAATGTCAGGAGCACAAG+GGG 0.592712 4_2:+49419489 Msa0604190:CDS
TGTTGGTTCACCATTTCAAG+TGG 0.611743 4_2:+49419430 Msa0604190:CDS
CGAATACAATATATTTGCTG+AGG 0.615306 4_2:+49415225 Msa0604190:CDS
TCGAGTGTAGAATCTCCAAA+GGG 0.615421 4_2:-49419578 None:intergenic
AACAACAATGTTTAACTCTG+GGG 0.649069 4_2:+49415329 Msa0604190:CDS
TCATGGTAGAGATCACATCA+TGG 0.685356 4_2:+49415654 Msa0604190:CDS
ATCCAATGTCAGGAGCACAA+GGG 0.690136 4_2:+49419488 Msa0604190:CDS
TGATCTCTACCATGAGCACG+AGG 0.691122 4_2:-49415646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGATTATTAATTAATTATTT+TGG + chr4_2:49414933-49414952 Msa0604190:intron 10.0%
!! AACAATTAAATAAAATCAAA+GGG - chr4_2:49416381-49416400 None:intergenic 10.0%
!! AAACAATTAAATAAAATCAA+AGG - chr4_2:49416382-49416401 None:intergenic 10.0%
!! TATTTGTTTATAAATGTAAT+CGG - chr4_2:49417114-49417133 None:intergenic 10.0%
!! AAAAGTAGTAATTAATTTAA+GGG - chr4_2:49417529-49417548 None:intergenic 10.0%
!!! AATATAAGTGAATATTTTTT+TGG - chr4_2:49417664-49417683 None:intergenic 10.0%
!! AAAAATAATTAAGGAATTAA+TGG + chr4_2:49418285-49418304 Msa0604190:intron 10.0%
!! AAAATAATTAAGGAATTAAT+GGG + chr4_2:49418286-49418305 Msa0604190:intron 10.0%
!! AAAAATGATTGTTAATTTAT+TGG + chr4_2:49418362-49418381 Msa0604190:intron 10.0%
!!! TTTTTTTAAAATTTCGTTTT+AGG - chr4_2:49418540-49418559 None:intergenic 10.0%
!!! TCTATGTTTATTCTTATTTA+AGG - chr4_2:49415077-49415096 None:intergenic 15.0%
!!! GAACTTTTTTTTTTTTTTTC+AGG + chr4_2:49415195-49415214 Msa0604190:intron 15.0%
!!! AATTTTTTTTTTTTGACAAG+AGG - chr4_2:49415978-49415997 None:intergenic 15.0%
!!! TATTTTGACCAATATATAAA+GGG - chr4_2:49416008-49416027 None:intergenic 15.0%
!! TTTCTGTTTATAAATGTAAT+CGG - chr4_2:49416907-49416926 None:intergenic 15.0%
!! ATTTGTTTATAAATGTAATC+GGG - chr4_2:49417113-49417132 None:intergenic 15.0%
!! ATCTAAAAAATTACTTCATT+CGG + chr4_2:49417208-49417227 Msa0604190:intron 15.0%
!! CACTTATATTTCTTATAAAA+AGG - chr4_2:49417674-49417693 None:intergenic 15.0%
!! CAAAAGTAGTAATTAATTTA+AGG - chr4_2:49417530-49417549 None:intergenic 15.0%
!! AATATTAAAAGTAAGTAAGT+TGG - chr4_2:49417559-49417578 None:intergenic 15.0%
!!! TCAATAAAATCACATTTTTA+AGG - chr4_2:49417874-49417893 None:intergenic 15.0%
!!! TTATTTTGACCATATATTAA+CGG - chr4_2:49417933-49417952 None:intergenic 15.0%
!! TGAAAAAGGTAAAAAAAAAT+AGG + chr4_2:49418255-49418274 Msa0604190:intron 15.0%
!! AAAAATGATTGCTAATTTAT+TGG + chr4_2:49418326-49418345 Msa0604190:intron 15.0%
!!! ATTTTATGATCTGTAATAAT+TGG - chr4_2:49418838-49418857 None:intergenic 15.0%
!!! GTTTATTCTTATTTAAGGTT+AGG - chr4_2:49415072-49415091 None:intergenic 20.0%
!! GTCTACAAATATATTTGAAA+AGG - chr4_2:49415117-49415136 None:intergenic 20.0%
!!! TAATTGATGATTTTAAGAGT+TGG - chr4_2:49415785-49415804 None:intergenic 20.0%
!! TAACATTTCCCTTTATATAT+TGG + chr4_2:49415997-49416016 Msa0604190:intron 20.0%
!!! CTATTTTGACCAATATATAA+AGG - chr4_2:49416009-49416028 None:intergenic 20.0%
!!! GTAGTTTTTATAATAATGAC+CGG - chr4_2:49416050-49416069 None:intergenic 20.0%
!!! TAAGCAAAAAACTACTTTTT+AGG - chr4_2:49416170-49416189 None:intergenic 20.0%
!! ACATTCTTATCTTTCTATAA+AGG + chr4_2:49416291-49416310 Msa0604190:intron 20.0%
!! AAATTCTTGATAAAAAGCTT+CGG + chr4_2:49416496-49416515 Msa0604190:intron 20.0%
!! TGCTGTTCTATAAAATAAAA+TGG + chr4_2:49416531-49416550 Msa0604190:intron 20.0%
!!! TAGAGTACAGTATTTTATTT+GGG - chr4_2:49416731-49416750 None:intergenic 20.0%
!! TTTGTTTATAAATGTAATCG+GGG - chr4_2:49417112-49417131 None:intergenic 20.0%
!!! TAAACAAATACCAACTTTTT+AGG + chr4_2:49417124-49417143 Msa0604190:intron 20.0%
!! ATTCAATTAACCTAAAAAGT+TGG - chr4_2:49417137-49417156 None:intergenic 20.0%
!! AATGTATTTGGTCAATATAT+AGG - chr4_2:49417352-49417371 None:intergenic 20.0%
!! CATTCAATTCTTAATGTATT+TGG - chr4_2:49417364-49417383 None:intergenic 20.0%
!!! AATTAATTTAAGGGTATTCA+CGG - chr4_2:49417520-49417539 None:intergenic 20.0%
!! ATTCTCTGTCATAATAAATA+AGG + chr4_2:49417576-49417595 Msa0604190:intron 20.0%
!! TTCTCTGTCATAATAAATAA+GGG + chr4_2:49417577-49417596 Msa0604190:intron 20.0%
!!! ATTTTTTTGGTCCTTTTTAT+AGG - chr4_2:49417651-49417670 None:intergenic 20.0%
!! AACAATTAGAATTATCATGA+GGG + chr4_2:49417804-49417823 Msa0604190:intron 20.0%
!!! CACTTTAGTTCAAAATAAAT+AGG + chr4_2:49417836-49417855 Msa0604190:intron 20.0%
!!! TTGATTTTGTTTATTTGCAA+CGG + chr4_2:49417890-49417909 Msa0604190:intron 20.0%
!!! TTAACTTTTCCGTTAATATA+TGG + chr4_2:49417921-49417940 Msa0604190:intron 20.0%
!! AAAGGTAAAAAAAAATAGGA+AGG + chr4_2:49418259-49418278 Msa0604190:intron 20.0%
!! ACATATTAATTCTCTTACTT+GGG - chr4_2:49418452-49418471 None:intergenic 20.0%
!! AACATATTAATTCTCTTACT+TGG - chr4_2:49418453-49418472 None:intergenic 20.0%
!! AGTAAGAGAATTAATATGTT+TGG + chr4_2:49418453-49418472 Msa0604190:intron 20.0%
!! TACTCATATTTAATTAGTGT+CGG - chr4_2:49418608-49418627 None:intergenic 20.0%
!! TTAGAGATAAAGATAAATCT+TGG + chr4_2:49419183-49419202 Msa0604190:intron 20.0%
!! TAGGAAAACAAATGTTAATT+CGG + chr4_2:49419465-49419484 Msa0604190:CDS 20.0%
! TTTGGTAAGAAAATCACATA+TGG + chr4_2:49414909-49414928 Msa0604190:intron 25.0%
! AAACAACAATGTTTAACTCT+GGG + chr4_2:49415328-49415347 Msa0604190:CDS 25.0%
!! GTGATTCATATTTTCCAATT+CGG - chr4_2:49415557-49415576 None:intergenic 25.0%
!!! TAAAGTATCGTACCTTTTTA+AGG - chr4_2:49415744-49415763 None:intergenic 25.0%
!! TTTTTATAATAATGACCGGA+AGG - chr4_2:49416046-49416065 None:intergenic 25.0%
!! TGCCACTTCAAAAAAAAATA+TGG + chr4_2:49416409-49416428 Msa0604190:intron 25.0%
! GCCACTTCAAAAAAAAATAT+GGG + chr4_2:49416410-49416429 Msa0604190:intron 25.0%
!!! TCCCATATTTTTTTTTGAAG+TGG - chr4_2:49416414-49416433 None:intergenic 25.0%
! AATTCTTGATAAAAAGCTTC+GGG + chr4_2:49416497-49416516 Msa0604190:intron 25.0%
! AAATGGAAAACGTTAACTTA+AGG + chr4_2:49416548-49416567 Msa0604190:intron 25.0%
! AATGGAAAACGTTAACTTAA+GGG + chr4_2:49416549-49416568 Msa0604190:intron 25.0%
! ACAAGTTAAGGATCTATAAA+AGG - chr4_2:49416681-49416700 None:intergenic 25.0%
!! GTAGAGTACAGTATTTTATT+TGG - chr4_2:49416732-49416751 None:intergenic 25.0%
! AAAGTATACTACTACTTTCA+AGG - chr4_2:49416782-49416801 None:intergenic 25.0%
!!! TAAGCAAAAATTCACTTTTC+AGG - chr4_2:49417065-49417084 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr4_2:49417075-49417094 Msa0604190:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr4_2:49417400-49417419 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr4_2:49417400-49417419 Msa0604190:intron 25.0%
!! ATTAAAAGTAAGTAAGTTGG+TGG - chr4_2:49417556-49417575 None:intergenic 25.0%
! AAGCAAAAAATACTCATCTT+CGG - chr4_2:49417701-49417720 None:intergenic 25.0%
!!! GTTTTAATGAATACTTACTC+TGG - chr4_2:49417734-49417753 None:intergenic 25.0%
! TTAATACAGCAACAAATTGT+AGG + chr4_2:49417773-49417792 Msa0604190:intron 25.0%
! CTCATGATAATTCTAATTGT+TGG - chr4_2:49417805-49417824 None:intergenic 25.0%
! CAACAATTAGAATTATCATG+AGG + chr4_2:49417803-49417822 Msa0604190:intron 25.0%
!!! AATCACATTTTTAAGGAATG+TGG - chr4_2:49417867-49417886 None:intergenic 25.0%
! AGTTATATAAATAGTGCACA+TGG + chr4_2:49417952-49417971 Msa0604190:intron 25.0%
! GGAAGGAGAAAAAATAATTA+AGG + chr4_2:49418276-49418295 Msa0604190:intron 25.0%
! TGATTCAATCACAAATGTAA+GGG - chr4_2:49418423-49418442 None:intergenic 25.0%
! TTGATTCAATCACAAATGTA+AGG - chr4_2:49418424-49418443 None:intergenic 25.0%
! TTTAGGCCTAAAAATACATT+GGG - chr4_2:49418523-49418542 None:intergenic 25.0%
!! TTTTAGGCCTAAAAATACAT+TGG - chr4_2:49418524-49418543 None:intergenic 25.0%
! ACAAAAAATGAAGCCTAATA+CGG + chr4_2:49419029-49419048 Msa0604190:intron 25.0%
! ATCTGTAAAAATCTGTTAGA+TGG + chr4_2:49419241-49419260 Msa0604190:intron 25.0%
! TTAATGGCAATTTAAAGGAT+GGG - chr4_2:49419630-49419649 None:intergenic 25.0%
! TTGATGATACTTTCATTGCT+GGG - chr4_2:49414870-49414889 None:intergenic 30.0%
! ATTGATGATACTTTCATTGC+TGG - chr4_2:49414871-49414890 None:intergenic 30.0%
! CGAATACAATATATTTGCTG+AGG + chr4_2:49415225-49415244 Msa0604190:CDS 30.0%
CAAACAACAATGTTTAACTC+TGG + chr4_2:49415327-49415346 Msa0604190:CDS 30.0%
AACAACAATGTTTAACTCTG+GGG + chr4_2:49415329-49415348 Msa0604190:CDS 30.0%
! TGGTATTTGAAACTGAAAAG+AGG - chr4_2:49415464-49415483 None:intergenic 30.0%
!!! ATTCTCTTTTGAGTTACTAG+GGG - chr4_2:49415512-49415531 None:intergenic 30.0%
!!! CATTCTCTTTTGAGTTACTA+GGG - chr4_2:49415513-49415532 None:intergenic 30.0%
!!! TCATTCTCTTTTGAGTTACT+AGG - chr4_2:49415514-49415533 None:intergenic 30.0%
! TTCATATTTTCCAATTCGGT+TGG - chr4_2:49415553-49415572 None:intergenic 30.0%
CAAAAACCTCAAAAAGCAAA+AGG + chr4_2:49415623-49415642 Msa0604190:CDS 30.0%
TCTTGTTCCTAACCTTAAAA+AGG + chr4_2:49415729-49415748 Msa0604190:CDS 30.0%
!!! TATCGTACCTTTTTAAGGTT+AGG - chr4_2:49415739-49415758 None:intergenic 30.0%
!! GATTTTAAGAGTTGGCTAAT+AGG - chr4_2:49415777-49415796 None:intergenic 30.0%
GATTATATAGATACTCCTTC+CGG + chr4_2:49416028-49416047 Msa0604190:intron 30.0%
TATGAAATGAGTGATGTATG+TGG - chr4_2:49416145-49416164 None:intergenic 30.0%
CTTTCTATAAAGGAAAATGC+TGG + chr4_2:49416301-49416320 Msa0604190:intron 30.0%
GTGAAATTTCCAAAATGTGT+TGG + chr4_2:49416344-49416363 Msa0604190:intron 30.0%
! ATGCTATAACTTGTATCCTA+GGG - chr4_2:49416706-49416725 None:intergenic 30.0%
! AATGCTATAACTTGTATCCT+AGG - chr4_2:49416707-49416726 None:intergenic 30.0%
! GATATTTAGTTCCAGTTGAT+AGG - chr4_2:49416840-49416859 None:intergenic 30.0%
CATTCGATAAATGATGTATG+TGG - chr4_2:49417040-49417059 None:intergenic 30.0%
GACATAAATCATTAAGACCA+AGG + chr4_2:49417254-49417273 Msa0604190:intron 30.0%
CTTATAAAAAGGATCGAAGA+GGG - chr4_2:49417443-49417462 None:intergenic 30.0%
TCTTATAAAAAGGATCGAAG+AGG - chr4_2:49417444-49417463 None:intergenic 30.0%
CTTCAAACACACTTGAAAAT+TGG + chr4_2:49417616-49417635 Msa0604190:intron 30.0%
GGTCAATGTTACCTATAAAA+AGG + chr4_2:49417637-49417656 Msa0604190:intron 30.0%
GCTGTATTAATTACTACAAG+TGG - chr4_2:49417763-49417782 None:intergenic 30.0%
!! ATTTTGTTTATTTGCAACGG+AGG + chr4_2:49417893-49417912 Msa0604190:intron 30.0%
!! TTTTGTTTATTTGCAACGGA+GGG + chr4_2:49417894-49417913 Msa0604190:intron 30.0%
CTTTGACATGTATTTATGAG+CGG + chr4_2:49417980-49417999 Msa0604190:intron 30.0%
!! CTTCTTTTAAAGATGAGTAG+TGG + chr4_2:49418210-49418229 Msa0604190:intron 30.0%
GGTTTAGAAAACAAATACTC+CGG + chr4_2:49418383-49418402 Msa0604190:intron 30.0%
!! AAGGGTTTTGATATATACTC+CGG - chr4_2:49418405-49418424 None:intergenic 30.0%
TATAGAATCACTTTCGATTG+AGG - chr4_2:49418575-49418594 None:intergenic 30.0%
!!! AATTTTTTAGGCTCCGTATT+AGG - chr4_2:49419045-49419064 None:intergenic 30.0%
TAAAACAATGCTACATAGCA+GGG - chr4_2:49419113-49419132 None:intergenic 30.0%
GAAAGAGCTTAAAAATCGTT+TGG + chr4_2:49419301-49419320 Msa0604190:CDS 30.0%
TGAGACAAATCTTGGAGATT+TGG - chr4_2:49415139-49415158 None:intergenic 35.0%
AATTTCCTTGATGCTGATGT+AGG + chr4_2:49415259-49415278 Msa0604190:CDS 35.0%
!! TGACTTGCTGAGATTATTTG+TGG - chr4_2:49415362-49415381 None:intergenic 35.0%
!! GATGGTGATGGAGAAATATT+TGG - chr4_2:49415436-49415455 None:intergenic 35.0%
AACTGAAAAGAGGAGTTAGA+TGG - chr4_2:49415454-49415473 None:intergenic 35.0%
!!! TTCTCTTTTGAGTTACTAGG+GGG - chr4_2:49415511-49415530 None:intergenic 35.0%
ACTCAACAGAAACCTCAAAA+GGG + chr4_2:49415575-49415594 Msa0604190:CDS 35.0%
GTCGTTGGAAAAAGAAAACA+TGG + chr4_2:49415597-49415616 Msa0604190:CDS 35.0%
CATCGAAGAAATGATGTATG+TGG + chr4_2:49416080-49416099 Msa0604190:intron 35.0%
GATGTATGTGGTCTATTATG+TGG + chr4_2:49416092-49416111 Msa0604190:intron 35.0%
!! CACATTTTGGAAATTTCACG+AGG - chr4_2:49416343-49416362 None:intergenic 35.0%
! AGAATGTTGCCAACACATTT+TGG - chr4_2:49416356-49416375 None:intergenic 35.0%
TATCCTAGGGATACAAGTTA+AGG - chr4_2:49416693-49416712 None:intergenic 35.0%
TGCTTATATTTGTGACCAGA+TGG - chr4_2:49416962-49416981 None:intergenic 35.0%
! AGCGGATGAAGTACTAATAT+AGG + chr4_2:49417998-49418017 Msa0604190:intron 35.0%
TTGACAATTACTCTGTAGCA+GGG + chr4_2:49418493-49418512 Msa0604190:intron 35.0%
CTTTCGATTGAGGAAACTTA+TGG - chr4_2:49418565-49418584 None:intergenic 35.0%
AGTGGTATGTAATTCGATGT+CGG - chr4_2:49418955-49418974 None:intergenic 35.0%
!!! TTTAGGCCCTCGAATTTTTT+AGG - chr4_2:49419057-49419076 None:intergenic 35.0%
GTAAAACAATGCTACATAGC+AGG - chr4_2:49419114-49419133 None:intergenic 35.0%
! GATAGTGTTGAATGTGTTGT+TGG + chr4_2:49419413-49419432 Msa0604190:CDS 35.0%
! GGGGCTTCTAGTTAAAATAA+TGG + chr4_2:49419508-49419527 Msa0604190:CDS 35.0%
AAGTATCATCAATCAGCAGC+TGG + chr4_2:49414878-49414897 Msa0604190:CDS 40.0%
!! TTGTGACGGATATTCTGAAG+TGG - chr4_2:49415039-49415058 None:intergenic 40.0%
ACTTCAGAATATCCGTCACA+AGG + chr4_2:49415038-49415057 Msa0604190:intron 40.0%
CTTCAGAATATCCGTCACAA+GGG + chr4_2:49415039-49415058 Msa0604190:intron 40.0%
CCAAACGTTGAGACAAATCT+TGG - chr4_2:49415147-49415166 None:intergenic 40.0%
CCAAGATTTGTCTCAACGTT+TGG + chr4_2:49415144-49415163 Msa0604190:intron 40.0%
CATCAGCATCAAGGAAATTC+AGG - chr4_2:49415258-49415277 None:intergenic 40.0%
GCTGAGATTATTTGTGGAAG+TGG - chr4_2:49415356-49415375 None:intergenic 40.0%
AAAGAGGAGTTAGATGGTGA+TGG - chr4_2:49415448-49415467 None:intergenic 40.0%
AGTTACTAGGGGGTGAATTT+GGG - chr4_2:49415501-49415520 None:intergenic 40.0%
CACTCAACAGAAACCTCAAA+AGG + chr4_2:49415574-49415593 Msa0604190:CDS 40.0%
! TTTTTCCAACGACCCTTTTG+AGG - chr4_2:49415590-49415609 None:intergenic 40.0%
TCATGGTAGAGATCACATCA+TGG + chr4_2:49415654-49415673 Msa0604190:CDS 40.0%
TGCAAGAGCAATGAAGGTTT+GGG - chr4_2:49415707-49415726 None:intergenic 40.0%
!! ATGTACACTGCTACTTTCTC+TGG - chr4_2:49416202-49416221 None:intergenic 40.0%
AGAGAAAGTAGCAGTGTACA+TGG + chr4_2:49416201-49416220 Msa0604190:intron 40.0%
GACATGTATTTATGAGCGCA+AGG + chr4_2:49416233-49416252 Msa0604190:intron 40.0%
AGCGCAAGGAGTCATAATAT+AGG + chr4_2:49416247-49416266 Msa0604190:intron 40.0%
!! GATCCTTAACTTGTATCCCT+AGG + chr4_2:49416687-49416706 Msa0604190:intron 40.0%
GAGTTTATGAACCCGAAACA+CGG + chr4_2:49416811-49416830 Msa0604190:intron 40.0%
AAAGTAGCACATACACCATC+TGG + chr4_2:49416944-49416963 Msa0604190:intron 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr4_2:49417078-49417097 Msa0604190:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr4_2:49417079-49417098 Msa0604190:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr4_2:49417404-49417423 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr4_2:49417403-49417422 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr4_2:49417403-49417422 Msa0604190:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr4_2:49417404-49417423 Msa0604190:intron 40.0%
GGAGTATAATATACTCCCTC+CGG - chr4_2:49417422-49417441 None:intergenic 40.0%
GTTGACAATTACTCTGTAGC+AGG + chr4_2:49418492-49418511 Msa0604190:intron 40.0%
GGCCTAAAAATACATTGGGA+CGG - chr4_2:49418519-49418538 None:intergenic 40.0%
TACGGAGCCTAAAAAATTCG+AGG + chr4_2:49419047-49419066 Msa0604190:intron 40.0%
ACGGAGCCTAAAAAATTCGA+GGG + chr4_2:49419048-49419067 Msa0604190:intron 40.0%
AAGAATCTTCATCGCTGCAT+AGG - chr4_2:49419382-49419401 None:intergenic 40.0%
!! TGTTGGTTCACCATTTCAAG+TGG + chr4_2:49419430-49419449 Msa0604190:CDS 40.0%
ACTCTTGCTTCCACTTGAAA+TGG - chr4_2:49419443-49419462 None:intergenic 40.0%
GTTAATTCGGATCCAATGTC+AGG + chr4_2:49419478-49419497 Msa0604190:CDS 40.0%
TCGAGTGTAGAATCTCCAAA+GGG - chr4_2:49419581-49419600 None:intergenic 40.0%
CAGCAGCTGGTTAACTGATT+TGG + chr4_2:49414891-49414910 Msa0604190:CDS 45.0%
TAGGCTTATGTCCCTTGTGA+CGG - chr4_2:49415053-49415072 None:intergenic 45.0%
TTCCTTGATGCTGATGTAGG+AGG + chr4_2:49415262-49415281 Msa0604190:CDS 45.0%
TCCTTGATGCTGATGTAGGA+GGG + chr4_2:49415263-49415282 Msa0604190:CDS 45.0%
TTTGGGGGGTTGTCAAAAGA+TGG - chr4_2:49415484-49415503 None:intergenic 45.0%
TTACTAGGGGGTGAATTTGG+GGG - chr4_2:49415499-49415518 None:intergenic 45.0%
GTTACTAGGGGGTGAATTTG+GGG - chr4_2:49415500-49415519 None:intergenic 45.0%
GAGTTACTAGGGGGTGAATT+TGG - chr4_2:49415502-49415521 None:intergenic 45.0%
ATCAGTGTCTCCAACCGAAT+TGG + chr4_2:49415540-49415559 Msa0604190:CDS 45.0%
AGAAACCTCAAAAGGGTCGT+TGG + chr4_2:49415582-49415601 Msa0604190:CDS 45.0%
!!! ACGAGGCCTTTTGCTTTTTG+AGG - chr4_2:49415632-49415651 None:intergenic 45.0%
CTGCAAGAGCAATGAAGGTT+TGG - chr4_2:49415708-49415727 None:intergenic 45.0%
AAGAGCTGCAAGAGCAATGA+AGG - chr4_2:49415713-49415732 None:intergenic 45.0%
!!! AACCACGATGCCGTTTTTTC+CGG + chr4_2:49416433-49416452 Msa0604190:intron 45.0%
AATCACAATTCATGCTGGCC+CGG - chr4_2:49416455-49416474 None:intergenic 45.0%
GCACCAATCACAATTCATGC+TGG - chr4_2:49416460-49416479 None:intergenic 45.0%
TTTATGAACCCGAAACACGG+TGG + chr4_2:49416814-49416833 Msa0604190:intron 45.0%
! GGCCGTCCCAATGTATTTTT+AGG + chr4_2:49418514-49418533 Msa0604190:intron 45.0%
ATGTTCACTCGAAGCTCAAG+TGG - chr4_2:49418973-49418992 None:intergenic 45.0%
!! CAAGTGGAAGCAAGAGTGTT+AGG + chr4_2:49419446-49419465 Msa0604190:CDS 45.0%
! ATCCAATGTCAGGAGCACAA+GGG + chr4_2:49419488-49419507 Msa0604190:CDS 45.0%
AACAGCAGTGTCTTACCCTT+TGG + chr4_2:49419563-49419582 Msa0604190:CDS 45.0%
GTCGAGTGTAGAATCTCCAA+AGG - chr4_2:49419582-49419601 None:intergenic 45.0%
CGACATTACCATCATTGCTC+AGG + chr4_2:49419598-49419617 Msa0604190:CDS 45.0%
GGTAACTACCTGAGCAATGA+TGG - chr4_2:49419609-49419628 None:intergenic 45.0%
!!! TTATATTTTAAAAATATTGA+AGG + chr4_2:49415920-49415939 Msa0604190:intron 5.0%
!!! TAAAAGTAAAATTATTTTTT+TGG + chr4_2:49416587-49416606 Msa0604190:intron 5.0%
!! ATATAATAAAAAAATGAAAA+AGG + chr4_2:49418241-49418260 Msa0604190:intron 5.0%
ACCCTCCTACATCAGCATCA+AGG - chr4_2:49415267-49415286 None:intergenic 50.0%
TACTAGGGGGTGAATTTGGG+GGG - chr4_2:49415498-49415517 None:intergenic 50.0%
TGATCTCTACCATGAGCACG+AGG - chr4_2:49415649-49415668 None:intergenic 50.0%
GGAAAATGCTGGATAACGCG+AGG + chr4_2:49416312-49416331 Msa0604190:intron 50.0%
AAATGCTGGATAACGCGAGG+TGG + chr4_2:49416315-49416334 Msa0604190:intron 50.0%
!!! ACCACGATGCCGTTTTTTCC+GGG + chr4_2:49416434-49416453 Msa0604190:intron 50.0%
TCATGCTGGCCCGGAAAAAA+CGG - chr4_2:49416446-49416465 None:intergenic 50.0%
GGGCCAGCATGAATTGTGAT+TGG + chr4_2:49416454-49416473 Msa0604190:intron 50.0%
TTGATAGGCCACCGTGTTTC+GGG - chr4_2:49416825-49416844 None:intergenic 50.0%
! GTTGATAGGCCACCGTGTTT+CGG - chr4_2:49416826-49416845 None:intergenic 50.0%
AAACACGGTGGCCTATCAAC+TGG + chr4_2:49416826-49416845 Msa0604190:intron 50.0%
GACCAAGGAAATACTCCCTC+CGG + chr4_2:49417269-49417288 Msa0604190:intron 50.0%
!! ACATAGCAGGGCTGGTCTAA+GGG - chr4_2:49419101-49419120 None:intergenic 50.0%
!! TACATAGCAGGGCTGGTCTA+AGG - chr4_2:49419102-49419121 None:intergenic 50.0%
ACAATGCTACATAGCAGGGC+TGG - chr4_2:49419109-49419128 None:intergenic 50.0%
ATCGCTGCATAGGCATGGTT+TGG - chr4_2:49419372-49419391 None:intergenic 50.0%
TCTTCATCGCTGCATAGGCA+TGG - chr4_2:49419377-49419396 None:intergenic 50.0%
! GATCCAATGTCAGGAGCACA+AGG + chr4_2:49419487-49419506 Msa0604190:CDS 50.0%
! TCCAATGTCAGGAGCACAAG+GGG + chr4_2:49419489-49419508 Msa0604190:CDS 50.0%
AGCAAAAGGCCTCGTGCTCA+TGG + chr4_2:49415637-49415656 Msa0604190:CDS 55.0%
! AATCGGGGAAGTACACCCTC+CGG - chr4_2:49417097-49417116 None:intergenic 55.0%
!! GACCGGAGGGAGTATTTCCT+TGG - chr4_2:49417274-49417293 None:intergenic 55.0%
GCCTAAAGCCCCTGCTTTAG+TGG + chr4_2:49419070-49419089 Msa0604190:intron 55.0%
GCCACTAAAGCAGGGGCTTT+AGG - chr4_2:49419074-49419093 None:intergenic 55.0%
!! ATAGCAGGGCTGGTCTAAGG+GGG - chr4_2:49419099-49419118 None:intergenic 55.0%
!! CATAGCAGGGCTGGTCTAAG+GGG - chr4_2:49419100-49419119 None:intergenic 55.0%
GCCCGGAAAAAACGGCATCG+TGG - chr4_2:49416438-49416457 None:intergenic 60.0%
AGGGGGCTGCCACTAAAGCA+GGG - chr4_2:49419082-49419101 None:intergenic 60.0%
AAGGGGGCTGCCACTAAAGC+AGG - chr4_2:49419083-49419102 None:intergenic 60.0%
GCCCCTTGTGCTCCTGACAT+TGG - chr4_2:49419493-49419512 None:intergenic 60.0%
GGGGGCTGCCACTAAAGCAG+GGG - chr4_2:49419081-49419100 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 49414850 49419649 49414850 ID=Msa0604190;Name=Msa0604190
chr4_2 mRNA 49414850 49419649 49414850 ID=Msa0604190-mRNA-1;Parent=Msa0604190;Name=Msa0604190-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|328
chr4_2 exon 49414850 49414912 49414850 ID=Msa0604190-mRNA-1:exon:11450;Parent=Msa0604190-mRNA-1
chr4_2 exon 49415217 49415750 49415217 ID=Msa0604190-mRNA-1:exon:11451;Parent=Msa0604190-mRNA-1
chr4_2 exon 49419260 49419649 49419260 ID=Msa0604190-mRNA-1:exon:11452;Parent=Msa0604190-mRNA-1
chr4_2 CDS 49414850 49414912 49414850 ID=Msa0604190-mRNA-1:cds;Parent=Msa0604190-mRNA-1
chr4_2 CDS 49415217 49415750 49415217 ID=Msa0604190-mRNA-1:cds;Parent=Msa0604190-mRNA-1
chr4_2 CDS 49419260 49419649 49419260 ID=Msa0604190-mRNA-1:cds;Parent=Msa0604190-mRNA-1
Gene Sequence

>Msa0604190

ATGGAGGAAATCAACAACCCAGCAATGAAAGTATCATCAATCAGCAGCTGGTTAACTGATTTGGAAATGAACGAATACAATATATTTGCTGAGGAATGCAACCTGAATTTCCTTGATGCTGATGTAGGAGGGTTTCTTTCACAAGACATGTCTAATGTATTTCAAGAACAAAACAAACAACAATGTTTAACTCTGGGGTCCACTTCCACAAATAATCTCAGCAAGTCATTCATTCATGAAACAATTGATAATAATGACAAAATCAATGAATCACTTTCACCAAATATTTCTCCATCACCATCTAACTCCTCTTTTCAGTTTCAAATACCATCTTTTGACAACCCCCCAAATTCACCCCCTAGTAACTCAAAAGAGAATGAAACAATATCAGTGTCTCCAACCGAATTGGAAAATATGAATCACTCAACAGAAACCTCAAAAGGGTCGTTGGAAAAAGAAAACATGGAAACAAAAACCTCAAAAAGCAAAAGGCCTCGTGCTCATGGTAGAGATCACATCATGGCTGAGAGAAATCGAAGAGAGAAACTCACCCAAACCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGATGGACAAGCTATCTGTACTAGTTGACACTATTAAGTACATGAAAGAGCTTAAAAATCGTTTGGAAGTTGTCGAAGAACAAAACAAGAAAGTAAAAAAAAATTCATCGACCAAACCATGCCTATGCAGCGATGAAGATTCTTCATCATGTGATGATAGTGTTGAATGTGTTGTTGGTTCACCATTTCAAGTGGAAGCAAGAGTGTTAGGAAAACAAATGTTAATTCGGATCCAATGTCAGGAGCACAAGGGGCTTCTAGTTAAAATAATGGTCGAAATTCAAAGATTTCAACTATTTGTTGTAAACAGCAGTGTCTTACCCTTTGGAGATTCTACACTCGACATTACCATCATTGCTCAGGTAGTTACCCATCCTTTAAATTGCCATTAA

Protein sequence

>Msa0604190

MEEINNPAMKVSSISSWLTDLEMNEYNIFAEECNLNFLDADVGGFLSQDMSNVFQEQNKQQCLTLGSTSTNNLSKSFIHETIDNNDKINESLSPNISPSPSNSSFQFQIPSFDNPPNSPPSNSKENETISVSPTELENMNHSTETSKGSLEKENMETKTSKSKRPRAHGRDHIMAERNRREKLTQTFIALAALVPNLKKMDKLSVLVDTIKYMKELKNRLEVVEEQNKKVKKNSSTKPCLCSDEDSSSCDDSVECVVGSPFQVEARVLGKQMLIRIQCQEHKGLLVKIMVEIQRFQLFVVNSSVLPFGDSTLDITIIAQVVTHPLNCH*