AlfalfaGEDB | Msa1179360

M. sativa cultivar zhongmu-4 / Msa1179360

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1179360	XP_013444365.1	90.294	340	31	1	1	338	1	340	0.0	616

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1179360	sp\|Q9SPG3\|MYB26_ARATH	86.614	127	8	1	1	118	1	127	2.80e-73	234

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1179360	A0A072TLY2	90.294	340	31	1	1	338	1	340	0.0	616

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1179360	TF	MYB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0291330	Msa1179360	0.801378	9.263330e-49	-8.615850e-47
Msa0329460	Msa1179360	0.821097	4.839698e-53	-8.615850e-47
Msa0373960	Msa1179360	0.824187	9.247099e-54	-8.615850e-47
Msa0423100	Msa1179360	0.832575	8.741999e-56	-8.615850e-47
Msa0591800	Msa1179360	0.856131	3.957807e-62	-8.615850e-47
Msa0739470	Msa1179360	0.813762	2.171575e-51	-8.615850e-47
Msa0860170	Msa1179360	0.827541	1.478264e-54	-8.615850e-47
Msa0899950	Msa1179360	0.803055	4.184354e-49	-8.615850e-47
Msa0965310	Msa1179360	0.801687	8.005147e-49	-8.615850e-47
Msa0999340	Msa1179360	0.811382	7.198349e-51	-8.615850e-47

Showing 1 to 10 of 16 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1179360	MtrunA17_Chr8g0342541	75.843	356	59	7	1	338	1	347	0.0	505
Msa1179360	MtrunA17_Chr8g0342521	73.743	358	63	8	1	338	1	347	3.59e-175	489
Msa1179360	MtrunA17_Chr8g0342481	72.852	291	63	9	1	285	1	281	7.41e-136	392
Msa1179360	MtrunA17_Chr8g0342481	59.292	113	35	4	154	264	295	398	8.68e-30	117
Msa1179360	MtrunA17_Chr2g0330041	69.767	258	59	12	1	247	1	250	4.07e-105	313
Msa1179360	MtrunA17_Chr3g0117091	57.143	196	71	4	1	194	1	185	2.16e-69	220
Msa1179360	MtrunA17_Chr1g0193371	72.180	133	36	1	1	132	1	133	2.75e-69	221
Msa1179360	MtrunA17_Chr2g0309911	78.862	123	25	1	1	123	1	122	6.63e-69	218
Msa1179360	MtrunA17_Chr1g0193801	71.429	133	37	1	1	132	1	133	1.14e-68	219
Msa1179360	MtrunA17_Chr7g0270891	72.180	133	36	1	1	132	1	133	1.45e-68	219

Showing 1 to 10 of 163 entries

Previous1 2 3 4 5…17Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1179360	AT3G13890.2	93.220	118	8	0	1	118	1	118	1.83e-77	241
Msa1179360	AT3G13890.1	86.614	127	8	1	1	118	1	127	2.84e-74	234
Msa1179360	AT1G57560.1	63.694	157	56	1	1	156	1	157	8.59e-70	221
Msa1179360	AT3G12720.1	79.032	124	25	1	1	124	12	134	2.07e-69	219
Msa1179360	AT5G26660.1	76.613	124	29	0	1	124	1	124	5.22e-69	219
Msa1179360	AT4G01680.3	76.423	123	29	0	1	123	1	123	8.86e-69	215
Msa1179360	AT1G09540.1	73.134	134	35	1	1	133	1	134	1.52e-68	219
Msa1179360	AT1G57560.2	76.423	123	29	0	1	123	1	123	3.07e-68	215
Msa1179360	AT4G01680.1	76.423	123	29	0	1	123	1	123	5.85e-68	216
Msa1179360	AT1G63910.1	79.310	116	24	0	1	116	1	116	1.41e-66	214

Showing 1 to 10 of 205 entries

Previous1 2 3 4 5…21Next

Find 69 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCCACGTTTCAAATC+AGG	0.335974	8_1:-12774027	None:intergenic
AACAAACAGAAGGTTAAAAG+AGG	0.525426	8_1:+12773751	Msa1179360:CDS
AACCAATATTATTATTGAAG+GGG	0.558954	8_1:-12774474	None:intergenic
AAGAAGAAAATTCTTTCTCA+TGG	0.466431	8_1:+12774412	Msa1179360:CDS
AATCAACCCAATTGAATTAA+TGG	0.204188	8_1:+12774822	Msa1179360:CDS
AATGACCATGTATCTTCATA+AGG	0.428818	8_1:-12774721	None:intergenic
AATTAAAGCTCCCATCCTAA+AGG	0.476871	8_1:-12775075	None:intergenic
ACAAATCCTATTATTCCTTT+AGG	0.261843	8_1:+12775060	Msa1179360:CDS
ACAATGATGACATGCACATG+AGG	0.628179	8_1:-12775014	None:intergenic
ACCAATATTATTATTGAAGG+GGG	0.565661	8_1:-12774473	None:intergenic

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAAACAGAAGGTTAAAAG+AGG	+	chr8_1:12773751-12773770	Msa1179360:CDS	30.0%
AGAAGGTTAAAAGAGGATTA+TGG	+	chr8_1:12773758-12773777	Msa1179360:CDS	30.0%
CACATTTAAAGAACAATGGA+GGG	-	chr8_1:12774143-12774162	None:intergenic	30.0%
TCACATTTAAAGAACAATGG+AGG	-	chr8_1:12774144-12774163	None:intergenic	30.0%
ACCCCCTTCAATAATAATAT+TGG	+	chr8_1:12774472-12774491	Msa1179360:CDS	30.0%
GAAAGTTTCTTCCCTATAAA+TGG	+	chr8_1:12774502-12774521	Msa1179360:CDS	30.0%
GATTAGGGTTTCCATTTATA+GGG	-	chr8_1:12774516-12774535	None:intergenic	30.0%
AGATTAGGGTTTCCATTTAT+AGG	-	chr8_1:12774517-12774536	None:intergenic	30.0%
ATGACCATGTATCTTCATAA+GGG	-	chr8_1:12774723-12774742	None:intergenic	30.0%
AATGACCATGTATCTTCATA+AGG	-	chr8_1:12774724-12774743	None:intergenic	30.0%

Showing 1 to 10 of 186 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	12773730	12775095	12773730	ID=Msa1179360;Name=Msa1179360
chr8_1	mRNA	12773730	12775095	12773730	ID=Msa1179360-mRNA-1;Parent=Msa1179360;Name=Msa1179360-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|3\|0\|339
chr8_1	exon	12773730	12773862	12773730	ID=Msa1179360-mRNA-1:exon:4588;Parent=Msa1179360-mRNA-1
chr8_1	exon	12773974	12774103	12773974	ID=Msa1179360-mRNA-1:exon:4589;Parent=Msa1179360-mRNA-1
chr8_1	exon	12774339	12775095	12774339	ID=Msa1179360-mRNA-1:exon:4590;Parent=Msa1179360-mRNA-1
chr8_1	CDS	12773730	12773862	12773730	ID=Msa1179360-mRNA-1:cds;Parent=Msa1179360-mRNA-1
chr8_1	CDS	12773974	12774103	12773974	ID=Msa1179360-mRNA-1:cds;Parent=Msa1179360-mRNA-1
chr8_1	CDS	12774339	12775095	12774339	ID=Msa1179360-mRNA-1:cds;Parent=Msa1179360-mRNA-1

Gene Sequence

>Msa1179360

ATGGGACATCACTCTTGTTGCAACAAACAGAAGGTTAAAAGAGGATTATGGTCACCGGAAGAAGATGAAAAACTCATCAAATATATTACAACATATGGACATGGTTGTTGGAGTTCTGTTCCAAAACTTGCTGGTCTGCAAAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCATCAAGAAGCTGCACTCATTGTAGAACTCCATAGCATTCTAGGCAATAGGTGGGCTCAGATTGCCAAGCACTTACCTGGAAGAACAGATAACGAGGTGAAAAACTTTTGGAATTCAAGCATTAAGAAGAAAATTCTTTCTCATGGTATTATTCCATCTTTCACCCCATTTTCTGATATTCACACCCCCTTCAATAATAATATTGGTTCTAAGGAAAGTTTCTTCCCTATAAATGGAAACCCTAATCTCATTCTAAACTTCAATCATCACCATGAAGATCAACTATGCTATCCAACCTCATCTCCAAAACTACAAGGTAATTTTCACCAAATTGATACAAAGATAGACATGATCAATAACCATTATAATGACAATTTGCTTCACATTCAAAATCCAATACCAGAAATCTTCCAACCAATGTCTAATCCTTCCCCTTATGAAGATACATGGTCATTGGGTTGTGTACCTCTTCATCTCAATCCAAATCAAGAAAATCAAATCTCAAAAAGTGATACCACCCCACACAACAAAATAATCAACCCAATTGAATTAATGGAACAATATGTTCAATGTCATGATTTGGTTGAACTTGAATCCACTCTTCCTAAATTAGTCAATGATCAAAGCCTTGAGGATTATGCGAAAATTCAGAGCTACACCACTAGTATTACTTATCCACAAGATCAAAATATGGAAGCTAATCAATTGATTTACATTAATGATGCCCTCATGTGCATGTCATCATTGTCATCCTCAAGCAGCCAAATAGTCACAAATCCTATTATTCCTTTAGGATGGGAGCTTTAA

Protein sequence

>Msa1179360

MGHHSCCNKQKVKRGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSHQEAALIVELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKILSHGIIPSFTPFSDIHTPFNNNIGSKESFFPINGNPNLILNFNHHHEDQLCYPTSSPKLQGNFHQIDTKIDMINNHYNDNLLHIQNPIPEIFQPMSNPSPYEDTWSLGCVPLHLNPNQENQISKSDTTPHNKIINPIELMEQYVQCHDLVELESTLPKLVNDQSLEDYAKIQSYTTSITYPQDQNMEANQLIYINDALMCMSSLSSSSSQIVTNPIIPLGWEL*