Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389050 | XP_003620607.2 | 97.538 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389050 | sp|Q9LV40|ROGF8_ARATH | 65.563 | 453 | 139 | 6 | 76 | 527 | 87 | 523 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389050 | F6LPV1 | 97.538 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 0.0 | 1061 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa1389050 | 0.803213 | 3.880064e-49 | -8.615850e-47 |
| Msa0074650 | Msa1389050 | 0.804618 | 1.981274e-49 | -8.615850e-47 |
| Msa0104500 | Msa1389050 | 0.809942 | 1.474382e-50 | -8.615850e-47 |
| Msa1389050 | Msa1435480 | 0.851060 | 1.134740e-60 | -8.615850e-47 |
| Msa1389050 | Msa1458910 | 0.848570 | 5.633111e-60 | -8.615850e-47 |
| Msa1389050 | Msa1462530 | 0.813285 | 2.764910e-51 | -8.615850e-47 |
| Msa0669840 | Msa1389050 | 0.840467 | 8.546015e-58 | -8.615850e-47 |
| Msa0725860 | Msa1389050 | 0.807988 | 3.861928e-50 | -8.615850e-47 |
| Msa0739470 | Msa1389050 | 0.809835 | 1.554821e-50 | -8.615850e-47 |
| Msa0739480 | Msa1389050 | 0.807581 | 4.714227e-50 | -8.615850e-47 |
| Msa0786040 | Msa1389050 | 0.841493 | 4.597012e-58 | -8.615850e-47 |
| Msa0823400 | Msa1389050 | 0.820597 | 6.304528e-53 | -8.615850e-47 |
| Msa0124130 | Msa1389050 | 0.813255 | 2.808211e-51 | -8.615850e-47 |
| Msa0149140 | Msa1389050 | 0.804261 | 2.351958e-49 | -8.615850e-47 |
| Msa0194380 | Msa1389050 | 0.814320 | 1.635745e-51 | -8.615850e-47 |
| Msa0206800 | Msa1389050 | 0.818264 | 2.146628e-52 | -8.615850e-47 |
| Msa1228190 | Msa1389050 | 0.887560 | 1.281594e-72 | -8.615850e-47 |
| Msa1271260 | Msa1389050 | 0.869720 | 2.505247e-66 | -8.615850e-47 |
| Msa1275250 | Msa1389050 | 0.830066 | 3.620064e-55 | -8.615850e-47 |
| Msa1292010 | Msa1389050 | 0.806259 | 8.972897e-50 | -8.615850e-47 |
| Msa1294290 | Msa1389050 | 0.860825 | 1.576762e-63 | -8.615850e-47 |
| Msa1339440 | Msa1389050 | 0.824998 | 5.957228e-54 | -8.615850e-47 |
| Msa0373960 | Msa1389050 | 0.871809 | 5.148195e-67 | -8.615850e-47 |
| Msa0406000 | Msa1389050 | 0.845526 | 3.844732e-59 | -8.615850e-47 |
| Msa0423100 | Msa1389050 | 0.861880 | 7.516582e-64 | -8.615850e-47 |
| Msa0424330 | Msa1389050 | 0.804627 | 1.973039e-49 | -8.615850e-47 |
| Msa0424340 | Msa1389050 | 0.834249 | 3.342409e-56 | -8.615850e-47 |
| Msa0441590 | Msa1389050 | 0.809638 | 1.713620e-50 | -8.615850e-47 |
| Msa0451400 | Msa1389050 | 0.841885 | 3.621082e-58 | -8.615850e-47 |
| Msa0469260 | Msa1389050 | 0.830529 | 2.790638e-55 | -8.615850e-47 |
| Msa0996270 | Msa1389050 | 0.820003 | 8.627606e-53 | -8.615850e-47 |
| Msa0999300 | Msa1389050 | 0.814536 | 1.465662e-51 | -8.615850e-47 |
| Msa0999340 | Msa1389050 | 0.888056 | 8.279191e-73 | -8.615850e-47 |
| Msa0999350 | Msa1389050 | 0.873368 | 1.551715e-67 | -8.615850e-47 |
| Msa0999360 | Msa1389050 | 0.857560 | 1.501652e-62 | -8.615850e-47 |
| Msa0999390 | Msa1389050 | 0.895535 | 8.735831e-76 | -8.615850e-47 |
| Msa0999400 | Msa1389050 | 0.864624 | 1.063385e-64 | -8.615850e-47 |
| Msa0999410 | Msa1389050 | 0.862810 | 3.892241e-64 | -8.615850e-47 |
| Msa0999700 | Msa1389050 | 0.968888 | 2.537825e-129 | -8.615850e-47 |
| Msa1084520 | Msa1389050 | 0.816387 | 5.677932e-52 | -8.615850e-47 |
| Msa1092020 | Msa1389050 | 0.814881 | 1.228968e-51 | -8.615850e-47 |
| Msa0242540 | Msa1389050 | 0.804452 | 2.146093e-49 | -8.615850e-47 |
| Msa0252630 | Msa1389050 | 0.814389 | 1.579681e-51 | -8.615850e-47 |
| Msa0252770 | Msa1389050 | 0.817835 | 2.683973e-52 | -8.615850e-47 |
| Msa0277290 | Msa1389050 | 0.806933 | 6.466255e-50 | -8.615850e-47 |
| Msa0280750 | Msa1389050 | 0.807439 | 5.053169e-50 | -8.615850e-47 |
| Msa0288200 | Msa1389050 | 0.808939 | 2.420608e-50 | -8.615850e-47 |
| Msa0291330 | Msa1389050 | 0.835696 | 1.444155e-56 | -8.615850e-47 |
| Msa0314630 | Msa1389050 | 0.801387 | 9.223492e-49 | -8.615850e-47 |
| Msa0322830 | Msa1389050 | 0.817919 | 2.568186e-52 | -8.615850e-47 |
| Msa0322840 | Msa1389050 | 0.810467 | 1.136235e-50 | -8.615850e-47 |
| Msa0322860 | Msa1389050 | 0.823335 | 1.464021e-53 | -8.615850e-47 |
| Msa0329460 | Msa1389050 | 0.832878 | 7.353184e-56 | -8.615850e-47 |
| Msa0329620 | Msa1389050 | 0.824058 | 9.916328e-54 | -8.615850e-47 |
| Msa0351770 | Msa1389050 | 0.839776 | 1.294532e-57 | -8.615850e-47 |
| Msa0359250 | Msa1389050 | 0.830025 | 3.705265e-55 | -8.615850e-47 |
| Msa1125810 | Msa1389050 | 0.800701 | 1.273944e-48 | -8.615850e-47 |
| Msa1135380 | Msa1389050 | 0.808153 | 3.562306e-50 | -8.615850e-47 |
| Msa1145020 | Msa1389050 | 0.803878 | 2.824452e-49 | -8.615850e-47 |
| Msa1171310 | Msa1389050 | 0.805817 | 1.111427e-49 | -8.615850e-47 |
| Msa1179360 | Msa1389050 | 0.822524 | 2.262397e-53 | -8.615850e-47 |
| Msa1179520 | Msa1389050 | 0.801228 | 9.940081e-49 | -8.615850e-47 |
| Msa1201110 | Msa1389050 | 0.823148 | 1.618977e-53 | -8.615850e-47 |
| Msa1201160 | Msa1389050 | 0.847697 | 9.813524e-60 | -8.615850e-47 |
| Msa0492190 | Msa1389050 | 0.831819 | 1.344428e-55 | -8.615850e-47 |
| Msa0515950 | Msa1389050 | 0.809950 | 1.468582e-50 | -8.615850e-47 |
| Msa0534930 | Msa1389050 | 0.820580 | 6.364165e-53 | -8.615850e-47 |
| Msa0535040 | Msa1389050 | 0.801893 | 7.263997e-49 | -8.615850e-47 |
| Msa0546830 | Msa1389050 | 0.820106 | 8.172237e-53 | -8.615850e-47 |
| Msa0575740 | Msa1389050 | 0.817408 | 3.348997e-52 | -8.615850e-47 |
| Msa0591790 | Msa1389050 | 0.824466 | 7.949687e-54 | -8.615850e-47 |
| Msa0591800 | Msa1389050 | 0.863249 | 2.847627e-64 | -8.615850e-47 |
| Msa0860170 | Msa1389050 | 0.818954 | 1.496679e-52 | -8.615850e-47 |
| Msa0862310 | Msa1389050 | 0.820815 | 5.619411e-53 | -8.615850e-47 |
| Msa0899950 | Msa1389050 | 0.978826 | 1.204839e-146 | -8.615850e-47 |
| Msa0927120 | Msa1389050 | 0.925190 | 2.566129e-90 | -8.615850e-47 |
| Msa0929870 | Msa1389050 | 0.824103 | 9.676766e-54 | -8.615850e-47 |
| Msa0941820 | Msa1389050 | 0.824098 | 9.700633e-54 | -8.615850e-47 |
| Msa0946210 | Msa1389050 | 0.802848 | 4.616632e-49 | -8.615850e-47 |
| Msa0961560 | Msa1389050 | 0.830165 | 3.424528e-55 | -8.615850e-47 |
| Msa0965310 | Msa1389050 | 0.973430 | 2.049934e-136 | -8.615850e-47 |
| Msa0979510 | Msa1389050 | 0.816032 | 6.816268e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389050 | MtrunA17_Chr6g0485861 | 97.538 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 0.0 | 1061 |
| Msa1389050 | MtrunA17_Chr2g0331631 | 60.413 | 533 | 173 | 12 | 6 | 527 | 28 | 533 | 0.0 | 580 |
| Msa1389050 | MtrunA17_Chr4g0004771 | 64.579 | 463 | 143 | 11 | 74 | 527 | 90 | 540 | 0.0 | 572 |
| Msa1389050 | MtrunA17_Chr7g0240501 | 52.451 | 408 | 156 | 5 | 73 | 460 | 183 | 572 | 1.34e-142 | 425 |
| Msa1389050 | MtrunA17_Chr4g0008771 | 53.704 | 378 | 159 | 4 | 62 | 424 | 84 | 460 | 1.41e-135 | 404 |
| Msa1389050 | MtrunA17_Chr4g0038651 | 52.533 | 375 | 160 | 5 | 73 | 430 | 86 | 459 | 1.76e-131 | 394 |
| Msa1389050 | MtrunA17_Chr3g0112731 | 50.653 | 383 | 163 | 5 | 73 | 436 | 99 | 474 | 4.29e-130 | 391 |
| Msa1389050 | MtrunA17_Chr5g0436141 | 51.316 | 380 | 159 | 5 | 76 | 436 | 84 | 456 | 8.58e-130 | 390 |
| Msa1389050 | MtrunA17_Chr8g0348921 | 47.074 | 376 | 174 | 5 | 73 | 424 | 96 | 470 | 6.00e-119 | 358 |
| Msa1389050 | MtrunA17_Chr7g0247761 | 43.780 | 418 | 167 | 7 | 74 | 424 | 113 | 529 | 1.41e-109 | 336 |
| Msa1389050 | MtrunA17_Chr5g0408591 | 45.378 | 357 | 183 | 6 | 73 | 419 | 117 | 471 | 9.81e-98 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389050 | AT3G24620.1 | 65.563 | 453 | 139 | 6 | 76 | 527 | 87 | 523 | 0.0 | 577 |
| Msa1389050 | AT4G13240.1 | 62.979 | 470 | 150 | 7 | 65 | 527 | 65 | 517 | 0.0 | 575 |
| Msa1389050 | AT1G79860.1 | 62.582 | 457 | 127 | 11 | 78 | 527 | 96 | 515 | 0.0 | 541 |
| Msa1389050 | AT1G52240.1 | 61.894 | 454 | 150 | 7 | 78 | 527 | 108 | 542 | 0.0 | 538 |
| Msa1389050 | AT5G19560.1 | 57.328 | 464 | 176 | 7 | 73 | 527 | 43 | 493 | 3.49e-174 | 501 |
| Msa1389050 | AT5G19560.5 | 57.328 | 464 | 176 | 7 | 73 | 527 | 43 | 493 | 3.49e-174 | 501 |
| Msa1389050 | AT5G19560.4 | 57.328 | 464 | 176 | 7 | 73 | 527 | 62 | 512 | 7.19e-174 | 500 |
| Msa1389050 | AT3G16130.1 | 50.962 | 520 | 213 | 11 | 19 | 525 | 44 | 534 | 3.23e-164 | 477 |
| Msa1389050 | AT5G19560.2 | 63.855 | 332 | 116 | 2 | 59 | 387 | 48 | 378 | 3.38e-148 | 430 |
| Msa1389050 | AT5G02010.1 | 48.798 | 416 | 189 | 6 | 73 | 465 | 69 | 483 | 1.01e-137 | 409 |
| Msa1389050 | AT4G38430.1 | 52.073 | 386 | 165 | 5 | 73 | 439 | 89 | 473 | 4.15e-135 | 403 |
| Msa1389050 | AT5G05940.1 | 50.943 | 371 | 160 | 4 | 74 | 423 | 102 | 471 | 1.39e-128 | 388 |
| Msa1389050 | AT5G19560.3 | 55.108 | 372 | 145 | 7 | 165 | 527 | 5 | 363 | 7.35e-128 | 377 |
| Msa1389050 | AT4G00460.2 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 9.03e-122 | 366 |
| Msa1389050 | AT4G00460.4 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 9.03e-122 | 366 |
| Msa1389050 | AT3G55660.1 | 45.192 | 416 | 190 | 7 | 37 | 418 | 57 | 468 | 2.15e-118 | 361 |
| Msa1389050 | AT1G01700.1 | 44.731 | 427 | 207 | 8 | 20 | 419 | 54 | 478 | 4.01e-117 | 354 |
| Msa1389050 | AT2G45890.1 | 47.185 | 373 | 170 | 6 | 74 | 424 | 93 | 460 | 2.96e-114 | 346 |
| Msa1389050 | AT1G01700.4 | 41.794 | 457 | 207 | 9 | 20 | 419 | 54 | 508 | 1.65e-110 | 338 |
| Msa1389050 | AT5G05940.2 | 49.552 | 335 | 147 | 4 | 74 | 387 | 102 | 435 | 6.06e-110 | 336 |
| Msa1389050 | AT3G55660.2 | 43.636 | 385 | 179 | 7 | 37 | 387 | 57 | 437 | 3.98e-103 | 317 |
| Msa1389050 | AT4G00460.3 | 47.401 | 327 | 153 | 6 | 111 | 419 | 8 | 333 | 2.41e-101 | 309 |
| Msa1389050 | AT1G31650.2 | 42.204 | 372 | 201 | 5 | 74 | 434 | 108 | 476 | 1.56e-96 | 303 |
| Msa1389050 | AT1G01700.3 | 41.832 | 404 | 199 | 9 | 20 | 389 | 54 | 455 | 2.68e-96 | 300 |
| Msa1389050 | AT1G31650.1 | 42.204 | 372 | 201 | 5 | 74 | 434 | 136 | 504 | 4.18e-96 | 303 |
| Msa1389050 | AT4G00460.1 | 52.535 | 217 | 93 | 3 | 74 | 281 | 104 | 319 | 4.34e-73 | 236 |
| Msa1389050 | AT1G01700.5 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 6.09e-71 | 231 |
| Msa1389050 | AT1G01700.2 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 6.09e-71 | 231 |
Find 111 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTAACATTGTCTTTC+TGG | 0.080935 | tig0021200:-120223 | None:intergenic |
| TTGTTATCACCTTGTTATAT+TGG | 0.258055 | tig0021200:-120815 | None:intergenic |
| CCATGGCTGCTTTAAGTACT+TGG | 0.282520 | tig0021200:-120241 | None:intergenic |
| TTGAAGCTTCTATTGTAATA+TGG | 0.285225 | tig0021200:+120637 | Msa1389050:CDS |
| TTAGAGATCAAAATGAATTC+TGG | 0.294452 | tig0021200:+120069 | Msa1389050:CDS |
| AATGTAATTATAGGACATTT+TGG | 0.333210 | tig0021200:+120040 | Msa1389050:intron |
| AATGACTCTCTCAGATTTCA+TGG | 0.338997 | tig0021200:+121450 | Msa1389050:CDS |
| ATCCCACCATCCTCAGAGTT+TGG | 0.353088 | tig0021200:-121394 | None:intergenic |
| AGATTTGCTAAGCTTCTTCT+AGG | 0.357290 | tig0021200:+118752 | Msa1389050:CDS |
| ATTATACCAGTTGGTGGCTT+AGG | 0.357434 | tig0021200:-118224 | None:intergenic |
| CGATCTGCTCATGAACATTC+CGG | 0.375648 | tig0021200:+119825 | Msa1389050:CDS |
| TATTCAAGGTTTATTTGATA+AGG | 0.386545 | tig0021200:+118043 | Msa1389050:CDS |
| GTTGGAGGAACTTTAACAAC+TGG | 0.388069 | tig0021200:-120164 | None:intergenic |
| GTTGTTAAAGTTCCTCCAAC+AGG | 0.390259 | tig0021200:+120167 | Msa1389050:CDS |
| ATATTGAGAGCAACTCCTAT+TGG | 0.393413 | tig0021200:-118161 | None:intergenic |
| TATACCAGCAAGGTTTGTTA+TGG | 0.393796 | tig0021200:-118831 | None:intergenic |
| TACTGTGGAATACTTTGATC+CGG | 0.414609 | tig0021200:+120551 | Msa1389050:CDS |
| CGGCTGGATGCCGCCAACGA+TGG | 0.421001 | tig0021200:-121328 | None:intergenic |
| ATTCTCGTTGGATTCTTTGC+CGG | 0.425301 | tig0021200:+121354 | Msa1389050:CDS |
| TTCAGAAACTGATTTGATGA+AGG | 0.432350 | tig0021200:+118727 | Msa1389050:intron |
| TGGAAAATCTTCATGGAGTT+CGG | 0.432609 | tig0021200:+120680 | Msa1389050:CDS |
| GTCTTCCTTTCTTGAGACAT+TGG | 0.438853 | tig0021200:-119240 | None:intergenic |
| ATAAAGATGGAAAATCTTCA+TGG | 0.441204 | tig0021200:+120673 | Msa1389050:CDS |
| AAGCTGAGTGTTTACCTCCA+TGG | 0.443142 | tig0021200:-119355 | None:intergenic |
| TTTGATAAGGATCATGATGA+AGG | 0.446490 | tig0021200:+118056 | Msa1389050:CDS |
| TATCAGATGTAGCTGTGAAA+TGG | 0.447982 | tig0021200:+120192 | Msa1389050:CDS |
| TTCAAGAGTAATAGAAAGCT+TGG | 0.450795 | tig0021200:+121246 | Msa1389050:CDS |
| ATGATCAAACAAGAGTTTCC+AGG | 0.451515 | tig0021200:+120759 | Msa1389050:CDS |
| AATGCCATAACAAACCTTGC+TGG | 0.452672 | tig0021200:+118827 | Msa1389050:CDS |
| AGTGAAGACTGTGGAAGTCC+TGG | 0.455369 | tig0021200:-120777 | None:intergenic |
| AAATGGTGTTTCTTCAGCAC+TGG | 0.456274 | tig0021200:+118796 | Msa1389050:CDS |
| AAGTTCTTGACCTCAAGAAT+AGG | 0.466447 | tig0021200:+120613 | Msa1389050:CDS |
| GACATGTCAGGTGCAGGAAA+TGG | 0.467588 | tig0021200:+118779 | Msa1389050:CDS |
| CTTCTATTGTAATATGGAAA+AGG | 0.469644 | tig0021200:+120643 | Msa1389050:CDS |
| CCATTGGAAACTCAGCCAAT+AGG | 0.473248 | tig0021200:+118146 | Msa1389050:CDS |
| TCTTGAATAGCTCTCTAGAA+TGG | 0.475283 | tig0021200:-121230 | None:intergenic |
| GGACAAAAGGAGATTTGAAA+AGG | 0.479375 | tig0021200:+121476 | Msa1389050:CDS |
| ATGCCTCCTAAGCCACCAAC+TGG | 0.479648 | tig0021200:+118218 | Msa1389050:CDS |
| CGATATTAATGTCGCGCGAT+AGG | 0.480793 | tig0021200:-121622 | None:intergenic |
| GCATCAAGCTTGCGCAAGGC+CGG | 0.484296 | tig0021200:-119844 | None:intergenic |
| TACTTGAGCATTTATTGCCA+TGG | 0.488291 | tig0021200:-120258 | None:intergenic |
| GATTTCATGGGATGGACAAA+AGG | 0.489636 | tig0021200:+121463 | Msa1389050:CDS |
| AGAGATTCAATGTAGTTGTC+AGG | 0.493552 | tig0021200:-120299 | None:intergenic |
| AAACCTTGAATATGTTTCCC+AGG | 0.494123 | tig0021200:-118032 | None:intergenic |
| TTGAAAAGGACTAATTCTAC+AGG | 0.501607 | tig0021200:+121490 | Msa1389050:CDS |
| GGTGGAGAAAAGAAATTGAA+TGG | 0.504792 | tig0021200:+119265 | Msa1389050:CDS |
| ATACCAGTTGGTGGCTTAGG+AGG | 0.512969 | tig0021200:-118221 | None:intergenic |
| AAAAGGAAGATGAATAAAGA+TGG | 0.515789 | tig0021200:+120660 | Msa1389050:CDS |
| CTCGTTGGATTCTTTGCCGG+TGG | 0.515807 | tig0021200:+121357 | Msa1389050:CDS |
| AACTCTGAGGATGGTGGGAT+AGG | 0.517108 | tig0021200:+121397 | Msa1389050:CDS |
| AAGAATCCAACGAGAATCTC+CGG | 0.517591 | tig0021200:-121348 | None:intergenic |
| CATTGCATCAAGCTTGCGCA+AGG | 0.519705 | tig0021200:-119848 | None:intergenic |
| CTGAGGATGGTGGGATAGGA+AGG | 0.520302 | tig0021200:+121401 | Msa1389050:CDS |
| AATTCAGCATGCAGAAATCA+AGG | 0.528944 | tig0021200:+117979 | None:intergenic |
| GTCAAGAACTTTATGTTCTG+TGG | 0.529156 | tig0021200:-120601 | None:intergenic |
| CTCTCTCAGATTTCATGGGA+TGG | 0.531255 | tig0021200:+121455 | Msa1389050:CDS |
| CTCAAAGAAAGAGTGACAAA+TGG | 0.531945 | tig0021200:+120135 | Msa1389050:CDS |
| CCTATTGGCTGAGTTTCCAA+TGG | 0.532644 | tig0021200:-118146 | None:intergenic |
| TCCTTAGCTAACTGTTGTGA+TGG | 0.535551 | tig0021200:-119324 | None:intergenic |
| ATCCCTGGGAAACATATTCA+AGG | 0.535882 | tig0021200:+118029 | Msa1389050:CDS |
| GGAGAAGACATGTCAGGTGC+AGG | 0.536981 | tig0021200:+118773 | Msa1389050:CDS |
| GGCAATAAGCATGGAGAAGA+GGG | 0.538220 | tig0021200:+120701 | Msa1389050:CDS |
| CATCGTTGGCGGCATCCAGC+CGG | 0.540395 | tig0021200:+121329 | Msa1389050:CDS |
| ACTGTGGAATACTTTGATCC+GGG | 0.540800 | tig0021200:+120552 | Msa1389050:CDS |
| GGAGATGTTTGATCAGCCAC+CGG | 0.544079 | tig0021200:-121373 | None:intergenic |
| TGGAGCCAATGTCTCAAGAA+AGG | 0.548345 | tig0021200:+119235 | Msa1389050:CDS |
| CTTCTAGGAGAAGACATGTC+AGG | 0.550196 | tig0021200:+118767 | Msa1389050:CDS |
| CTCCAAACTCTGAGGATGGT+GGG | 0.553349 | tig0021200:+121392 | Msa1389050:CDS |
| AGTTTCCAATGGAATATCAC+TGG | 0.553463 | tig0021200:-118135 | None:intergenic |
| TGCTCAAGTACTATCCGAGA+TGG | 0.555455 | tig0021200:+120271 | Msa1389050:CDS |
| AACCTTGAATATGTTTCCCA+GGG | 0.559119 | tig0021200:-118031 | None:intergenic |
| CCAAGTACTTAAAGCAGCCA+TGG | 0.563065 | tig0021200:+120241 | Msa1389050:CDS |
| TCACAACAGTTAGCTAAGGA+TGG | 0.570145 | tig0021200:+119327 | Msa1389050:CDS |
| TCTCCAAACTCTGAGGATGG+TGG | 0.572008 | tig0021200:+121391 | Msa1389050:CDS |
| ATGACTCTCTCAGATTTCAT+GGG | 0.572048 | tig0021200:+121451 | Msa1389050:CDS |
| GCTACATCTGATAACCCTGT+TGG | 0.573819 | tig0021200:-120182 | None:intergenic |
| CGGCAATAAGCATGGAGAAG+AGG | 0.574710 | tig0021200:+120700 | Msa1389050:CDS |
| CTACATTGAATCTCTCCCTA+AGG | 0.579199 | tig0021200:+120307 | Msa1389050:CDS |
| AAGCTTCAATCCTATTCTTG+AGG | 0.579814 | tig0021200:-120623 | None:intergenic |
| ATGGAGTTCGGCAATAAGCA+TGG | 0.581044 | tig0021200:+120692 | Msa1389050:CDS |
| ATCCAACGAGAATCTCCGGC+TGG | 0.581392 | tig0021200:-121344 | None:intergenic |
| ATCCAGCCGGAGATTCTCGT+TGG | 0.585511 | tig0021200:+121342 | Msa1389050:CDS |
| GACAAAGAATCCATCGTTGG+CGG | 0.587221 | tig0021200:+121318 | Msa1389050:CDS |
| ATATACCAGTGATATTCCAT+TGG | 0.587677 | tig0021200:+118130 | Msa1389050:CDS |
| TTGATAAGGATCATGATGAA+GGG | 0.588470 | tig0021200:+118057 | Msa1389050:CDS |
| AAATCTGAGAGAGTCATTGA+TGG | 0.588625 | tig0021200:-121445 | None:intergenic |
| ACATCTCCAAACTCTGAGGA+TGG | 0.591064 | tig0021200:+121388 | Msa1389050:CDS |
| GTTGTCAGGTATCTCCATCT+CGG | 0.591503 | tig0021200:-120285 | None:intergenic |
| ATTGTTGAGAGGAATTGTCC+CGG | 0.601613 | tig0021200:-120570 | None:intergenic |
| TCCATCACAACAGTTAGCTA+AGG | 0.603193 | tig0021200:+119323 | Msa1389050:CDS |
| ACATCTGATAACCCTGTTGG+AGG | 0.604210 | tig0021200:-120179 | None:intergenic |
| TTGTTAAAGTTCCTCCAACA+GGG | 0.606551 | tig0021200:+120168 | Msa1389050:CDS |
| CAGCAAAATCCAATATAACA+AGG | 0.607276 | tig0021200:+120806 | Msa1389050:CDS |
| AAAAGTGATGAGGAAGCTGA+AGG | 0.607695 | tig0021200:+120101 | Msa1389050:CDS |
| TGTCTCAAGAAAGGAAGACT+AGG | 0.613102 | tig0021200:+119244 | Msa1389050:CDS |
| TTGGAGGAACTTTAACAACT+GGG | 0.617010 | tig0021200:-120163 | None:intergenic |
| CTCAAGAAAGGAAGACTAGG+TGG | 0.617206 | tig0021200:+119247 | Msa1389050:CDS |
| AATGACAAAGAATCCATCGT+TGG | 0.619614 | tig0021200:+121315 | Msa1389050:CDS |
| AAAGAAAGAGTGACAAATGG+TGG | 0.626399 | tig0021200:+120138 | Msa1389050:CDS |
| CCAAAATGATCACAGGATGT+GGG | 0.631669 | tig0021200:+121202 | Msa1389050:intron |
| GGGACAATTCCTCTCAACAA+TGG | 0.632556 | tig0021200:+120572 | Msa1389050:CDS |
| CAGAATGGTAGAGAAAGCCT+TGG | 0.634845 | tig0021200:+120507 | Msa1389050:intron |
| GATCTATAAGTGCATTACTG+TGG | 0.648265 | tig0021200:+120536 | Msa1389050:CDS |
| AGCTAAGGATGGATCAACCA+TGG | 0.652900 | tig0021200:+119338 | Msa1389050:CDS |
| ATTTGTAGATCATGACGACT+CGG | 0.653527 | tig0021200:+119794 | Msa1389050:intron |
| ACTTATAGATCGACTCACCA+AGG | 0.679802 | tig0021200:-120524 | None:intergenic |
| TGGTCATGTCCATTGTTGAG+AGG | 0.679809 | tig0021200:-120581 | None:intergenic |
| TCAAACATCTCCAAACTCTG+AGG | 0.682927 | tig0021200:+121384 | Msa1389050:CDS |
| TCTGAGAGAGTCATTGATGG+TGG | 0.705269 | tig0021200:-121442 | None:intergenic |
| CTGATATCAAGTGAAGACTG+TGG | 0.722584 | tig0021200:-120786 | None:intergenic |
| TAAGGATGGATCAACCATGG+AGG | 0.766138 | tig0021200:+119341 | Msa1389050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTATCAATTTAAAAAA+AGG | + | tig0021200:118544-118563 | Msa1389050:intron | 10.0% |
| !! | AAAAATAAAAACTATAACAA+AGG | + | tig0021200:118625-118644 | Msa1389050:intron | 10.0% |
| !! | TATTTAATTAATGTATATCA+TGG | + | tig0021200:119384-119403 | Msa1389050:intron | 10.0% |
| !!! | AAAAATCACAATTTATTTTG+TGG | + | tig0021200:118420-118439 | Msa1389050:intron | 15.0% |
| !! | ATTTAAAAAAAGGTAATAAG+TGG | + | tig0021200:118554-118573 | Msa1389050:intron | 15.0% |
| !!! | TTTTTAAATGAAAACAACAT+TGG | + | tig0021200:119156-119175 | Msa1389050:intron | 15.0% |
| !! | TCTAATAGTAATTAAGAAAA+AGG | - | tig0021200:120000-120019 | None:intergenic | 15.0% |
| !! | TCTTAATTACTATTAGAATT+TGG | + | tig0021200:120003-120022 | Msa1389050:intron | 15.0% |
| !! | TTTAAATAATATCGTCTAAA+GGG | - | tig0021200:121000-121019 | None:intergenic | 15.0% |
| !! | TATTCAAGGTTTATTTGATA+AGG | + | tig0021200:118043-118062 | Msa1389050:CDS | 20.0% |
| !! | GCATAATAACTTAAAATGTA+GGG | - | tig0021200:118256-118275 | None:intergenic | 20.0% |
| !! | TGCATAATAACTTAAAATGT+AGG | - | tig0021200:118257-118276 | None:intergenic | 20.0% |
| !!! | TTGTATATATTTTCCAAAAG+TGG | + | tig0021200:118898-118917 | Msa1389050:intron | 20.0% |
| !!! | TTTTTGATGATATTCGAATT+TGG | - | tig0021200:119615-119634 | None:intergenic | 20.0% |
| !!! | AATTAAGAAAAAGGTATGTT+TGG | - | tig0021200:119991-120010 | None:intergenic | 20.0% |
| !!! | AATGTAATTATAGGACATTT+TGG | + | tig0021200:120040-120059 | Msa1389050:intron | 20.0% |
| !! | TGAGTTTAATGTAAAGTTAT+TGG | - | tig0021200:120899-120918 | None:intergenic | 20.0% |
| !! | TTTACATTAAACTCAAAACA+CGG | + | tig0021200:120904-120923 | Msa1389050:intron | 20.0% |
| !! | GTTTAAATAATATCGTCTAA+AGG | - | tig0021200:121001-121020 | None:intergenic | 20.0% |
| !! | AAAAAAAGAACAAACAAGAT+TGG | - | tig0021200:121119-121138 | None:intergenic | 20.0% |
| !!! | TCCAAGTAATAATTTTTCTT+CGG | - | tig0021200:121571-121590 | None:intergenic | 20.0% |
| !! | CTTAGTTCATGACTTTTAAA+TGG | - | tig0021200:118303-118322 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGTGGTGTTAGT+CGG | + | tig0021200:118430-118449 | Msa1389050:intron | 25.0% |
| !!! | TTTTTTTTGTCTCTACATGA+AGG | + | tig0021200:118655-118674 | Msa1389050:intron | 25.0% |
| !! | TTAGAATATGTTTCCACTTT+TGG | - | tig0021200:118914-118933 | None:intergenic | 25.0% |
| ! | CAAAAATGTAGTTACTTACA+AGG | - | tig0021200:119876-119895 | None:intergenic | 25.0% |
| ! | ACTTATTTGAACTTATCTAC+TGG | - | tig0021200:119964-119983 | None:intergenic | 25.0% |
| ! | TAGAATTTGGACTAACTTTA+TGG | + | tig0021200:120016-120035 | Msa1389050:intron | 25.0% |
| ! | CTTTATGGCAATGTAATTAT+AGG | + | tig0021200:120031-120050 | Msa1389050:intron | 25.0% |
| ! | TTAGAGATCAAAATGAATTC+TGG | + | tig0021200:120069-120088 | Msa1389050:CDS | 25.0% |
| ! | TCCCTAAGGTAATATAATTA+AGG | + | tig0021200:120321-120340 | Msa1389050:intron | 25.0% |
| ! | CCCTTAATTATATTACCTTA+GGG | - | tig0021200:120325-120344 | None:intergenic | 25.0% |
| ! | CCCTAAGGTAATATAATTAA+GGG | + | tig0021200:120322-120341 | Msa1389050:intron | 25.0% |
| ! | ACCCTTAATTATATTACCTT+AGG | - | tig0021200:120326-120345 | None:intergenic | 25.0% |
| ! | AAGGTAATATAATTAAGGGT+CGG | + | tig0021200:120326-120345 | Msa1389050:intron | 25.0% |
| !! | TTTTTATAAGCTCTCTCAAA+CGG | - | tig0021200:120401-120420 | None:intergenic | 25.0% |
| ! | TTGAAGCTTCTATTGTAATA+TGG | + | tig0021200:120637-120656 | Msa1389050:CDS | 25.0% |
| ! | CTTCTATTGTAATATGGAAA+AGG | + | tig0021200:120643-120662 | Msa1389050:CDS | 25.0% |
| ! | AAAAGGAAGATGAATAAAGA+TGG | + | tig0021200:120660-120679 | Msa1389050:CDS | 25.0% |
| ! | ATAAAGATGGAAAATCTTCA+TGG | + | tig0021200:120673-120692 | Msa1389050:CDS | 25.0% |
| !! | TTGTTATCACCTTGTTATAT+TGG | - | tig0021200:120818-120837 | None:intergenic | 25.0% |
| !! | AATGTAAAGTTATTGGTGTT+TGG | - | tig0021200:120892-120911 | None:intergenic | 25.0% |
| ! | TAATAGATTGTTTATCGTTG+AGG | + | tig0021200:120929-120948 | Msa1389050:intron | 25.0% |
| !! | ATCTATTTTCTTGTGAATCA+AGG | + | tig0021200:121141-121160 | Msa1389050:intron | 25.0% |
| !!! | GATTGATGATGTTTTATATG+TGG | + | tig0021200:121288-121307 | Msa1389050:CDS | 25.0% |
| !!! | GAAAAAGTTTTGAATAAGCT+TGG | + | tig0021200:121541-121560 | Msa1389050:CDS | 25.0% |
| ! | ACCGAAGAAAAATTATTACT+TGG | + | tig0021200:121567-121586 | Msa1389050:CDS | 25.0% |
| TTTGATAAGGATCATGATGA+AGG | + | tig0021200:118056-118075 | Msa1389050:CDS | 30.0% | |
| TTGATAAGGATCATGATGAA+GGG | + | tig0021200:118057-118076 | Msa1389050:CDS | 30.0% | |
| ATATACCAGTGATATTCCAT+TGG | + | tig0021200:118130-118149 | Msa1389050:CDS | 30.0% | |
| AGAAAAATTATACCAGTTGG+TGG | - | tig0021200:118233-118252 | None:intergenic | 30.0% | |
| AAAGTCATGAACTAAGATCA+TGG | + | tig0021200:118307-118326 | Msa1389050:intron | 30.0% | |
| AAGTCATGAACTAAGATCAT+GGG | + | tig0021200:118308-118327 | Msa1389050:intron | 30.0% | |
| !! | TTCAGAAACTGATTTGATGA+AGG | + | tig0021200:118727-118746 | Msa1389050:intron | 30.0% |
| ! | CAAAAAAGTATATACCAGCA+AGG | - | tig0021200:118844-118863 | None:intergenic | 30.0% |
| ! | TTTTTGCCCTCAAATCTTTA+TGG | + | tig0021200:118858-118877 | Msa1389050:intron | 30.0% |
| TTCCTACCATAAAGATTTGA+GGG | - | tig0021200:118867-118886 | None:intergenic | 30.0% | |
| TTTCCTACCATAAAGATTTG+AGG | - | tig0021200:118868-118887 | None:intergenic | 30.0% | |
| CTTTATGGTAGGAAATGAAA+TGG | + | tig0021200:118873-118892 | Msa1389050:intron | 30.0% | |
| AACTTTAATCGTAACTTCGT+AGG | + | tig0021200:119036-119055 | Msa1389050:intron | 30.0% | |
| !! | TTTTGGAGAACAATCAAAGT+TGG | + | tig0021200:119215-119234 | Msa1389050:CDS | 30.0% |
| GTATCCTAATTGCATATATG+CGG | + | tig0021200:119567-119586 | Msa1389050:intron | 30.0% | |
| ! | ATCTAGAAATTTGAAGTCGT+GGG | - | tig0021200:119731-119750 | None:intergenic | 30.0% |
| ! | TTAAGTTGCATATCCAAACA+GGG | - | tig0021200:119899-119918 | None:intergenic | 30.0% |
| CTTTCATATCTTTGTCAGAA+TGG | + | tig0021200:120492-120511 | Msa1389050:intron | 30.0% | |
| CAGCAAAATCCAATATAACA+AGG | + | tig0021200:120806-120825 | Msa1389050:CDS | 30.0% | |
| CACTGTTGTTACTCTATATT+CGG | + | tig0021200:121063-121082 | Msa1389050:intron | 30.0% | |
| TTCAAGAGTAATAGAAAGCT+TGG | + | tig0021200:121246-121265 | Msa1389050:CDS | 30.0% | |
| !! | TGGCTTATACAGTTTTATCA+AGG | + | tig0021200:121266-121285 | Msa1389050:CDS | 30.0% |
| TTGAAAAGGACTAATTCTAC+AGG | + | tig0021200:121490-121509 | Msa1389050:CDS | 30.0% | |
| ! | AGAAAAATGTTTGAGATCCC+TGG | + | tig0021200:118014-118033 | Msa1389050:exon | 35.0% |
| ! | GAAAAATGTTTGAGATCCCT+GGG | + | tig0021200:118015-118034 | Msa1389050:exon | 35.0% |
| AACCTTGAATATGTTTCCCA+GGG | - | tig0021200:118034-118053 | None:intergenic | 35.0% | |
| AAACCTTGAATATGTTTCCC+AGG | - | tig0021200:118035-118054 | None:intergenic | 35.0% | |
| AGTTTCCAATGGAATATCAC+TGG | - | tig0021200:118138-118157 | None:intergenic | 35.0% | |
| ATATTGAGAGCAACTCCTAT+TGG | - | tig0021200:118164-118183 | None:intergenic | 35.0% | |
| GGGAGAAAAATTATACCAGT+TGG | - | tig0021200:118236-118255 | None:intergenic | 35.0% | |
| !! | AGATTTGCTAAGCTTCTTCT+AGG | + | tig0021200:118752-118771 | Msa1389050:CDS | 35.0% |
| !! | TATACCAGCAAGGTTTGTTA+TGG | - | tig0021200:118834-118853 | None:intergenic | 35.0% |
| !! | CATGACATGTGGTTTGTTAT+AGG | + | tig0021200:118950-118969 | Msa1389050:intron | 35.0% |
| ! | TTCCATGTAGCATCTGTTTT+TGG | + | tig0021200:119198-119217 | Msa1389050:intron | 35.0% |
| GGTGGAGAAAAGAAATTGAA+TGG | + | tig0021200:119265-119284 | Msa1389050:CDS | 35.0% | |
| ATTCTGCTTCCATACGATTA+GGG | + | tig0021200:119407-119426 | Msa1389050:intron | 35.0% | |
| ATTCTCCACATTCAGACAAT+TGG | + | tig0021200:119430-119449 | Msa1389050:intron | 35.0% | |
| TTCTCCACATTCAGACAATT+GGG | + | tig0021200:119431-119450 | Msa1389050:intron | 35.0% | |
| CAGTAGTTGTTTGATCAAGA+GGG | - | tig0021200:119547-119566 | None:intergenic | 35.0% | |
| TTCTCCGCATATATGCAATT+AGG | - | tig0021200:119574-119593 | None:intergenic | 35.0% | |
| ! | GATCTAGAAATTTGAAGTCG+TGG | - | tig0021200:119732-119751 | None:intergenic | 35.0% |
| GTCACAGATATATCTAGTGA+TGG | - | tig0021200:119754-119773 | None:intergenic | 35.0% | |
| ATTTGTAGATCATGACGACT+CGG | + | tig0021200:119794-119813 | Msa1389050:intron | 35.0% | |
| ! | AACTACATTTTTGCCCTGTT+TGG | + | tig0021200:119883-119902 | Msa1389050:intron | 35.0% |
| ! | GTTAAGTTGCATATCCAAAC+AGG | - | tig0021200:119900-119919 | None:intergenic | 35.0% |
| GCAACTTAACTATACGCTTA+TGG | + | tig0021200:119910-119929 | Msa1389050:intron | 35.0% | |
| GTATGTCTCAAAAAGTGATG+AGG | + | tig0021200:120091-120110 | Msa1389050:CDS | 35.0% | |
| CTCAAAGAAAGAGTGACAAA+TGG | + | tig0021200:120135-120154 | Msa1389050:CDS | 35.0% | |
| AAAGAAAGAGTGACAAATGG+TGG | + | tig0021200:120138-120157 | Msa1389050:CDS | 35.0% | |
| TTGGAGGAACTTTAACAACT+GGG | - | tig0021200:120166-120185 | None:intergenic | 35.0% | |
| TTGTTAAAGTTCCTCCAACA+GGG | + | tig0021200:120168-120187 | Msa1389050:CDS | 35.0% | |
| TATCAGATGTAGCTGTGAAA+TGG | + | tig0021200:120192-120211 | Msa1389050:CDS | 35.0% | |
| CTTGGTTAACATTGTCTTTC+TGG | - | tig0021200:120226-120245 | None:intergenic | 35.0% | |
| TACTTGAGCATTTATTGCCA+TGG | - | tig0021200:120261-120280 | None:intergenic | 35.0% | |
| AGAGATTCAATGTAGTTGTC+AGG | - | tig0021200:120302-120321 | None:intergenic | 35.0% | |
| AAAAACGCTTAATGATTCCG+CGG | + | tig0021200:120419-120438 | Msa1389050:intron | 35.0% | |
| ATTATCTCTATACCATACCG+CGG | - | tig0021200:120439-120458 | None:intergenic | 35.0% | |
| GATCTATAAGTGCATTACTG+TGG | + | tig0021200:120536-120555 | Msa1389050:CDS | 35.0% | |
| TACTGTGGAATACTTTGATC+CGG | + | tig0021200:120551-120570 | Msa1389050:CDS | 35.0% | |
| GTCAAGAACTTTATGTTCTG+TGG | - | tig0021200:120604-120623 | None:intergenic | 35.0% | |
| AAGTTCTTGACCTCAAGAAT+AGG | + | tig0021200:120613-120632 | Msa1389050:CDS | 35.0% | |
| AAGCTTCAATCCTATTCTTG+AGG | - | tig0021200:120626-120645 | None:intergenic | 35.0% | |
| TGGAAAATCTTCATGGAGTT+CGG | + | tig0021200:120680-120699 | Msa1389050:CDS | 35.0% | |
| ATGATCAAACAAGAGTTTCC+AGG | + | tig0021200:120759-120778 | Msa1389050:CDS | 35.0% | |
| GATTGTTTATCGTTGAGGTA+TGG | + | tig0021200:120934-120953 | Msa1389050:intron | 35.0% | |
| GCTCATAGTTTACTGATAAG+TGG | + | tig0021200:120956-120975 | Msa1389050:intron | 35.0% | |
| ! | TCTTGAATAGCTCTCTAGAA+TGG | - | tig0021200:121233-121252 | None:intergenic | 35.0% |
| AATGACAAAGAATCCATCGT+TGG | + | tig0021200:121315-121334 | Msa1389050:CDS | 35.0% | |
| AAATCTGAGAGAGTCATTGA+TGG | - | tig0021200:121448-121467 | None:intergenic | 35.0% | |
| AATGACTCTCTCAGATTTCA+TGG | + | tig0021200:121450-121469 | Msa1389050:CDS | 35.0% | |
| ATGACTCTCTCAGATTTCAT+GGG | + | tig0021200:121451-121470 | Msa1389050:CDS | 35.0% | |
| GGACAAAAGGAGATTTGAAA+AGG | + | tig0021200:121476-121495 | Msa1389050:CDS | 35.0% | |
| ATCCCTGGGAAACATATTCA+AGG | + | tig0021200:118029-118048 | Msa1389050:CDS | 40.0% | |
| !! | ATTATACCAGTTGGTGGCTT+AGG | - | tig0021200:118227-118246 | None:intergenic | 40.0% |
| AAATGGTGTTTCTTCAGCAC+TGG | + | tig0021200:118796-118815 | Msa1389050:CDS | 40.0% | |
| AATGCCATAACAAACCTTGC+TGG | + | tig0021200:118827-118846 | Msa1389050:CDS | 40.0% | |
| TGCCCTCAAATCTTTATGGT+AGG | + | tig0021200:118862-118881 | Msa1389050:intron | 40.0% | |
| CTCCAAAAACAGATGCTACA+TGG | - | tig0021200:119203-119222 | None:intergenic | 40.0% | |
| GTCTTCCTTTCTTGAGACAT+TGG | - | tig0021200:119243-119262 | None:intergenic | 40.0% | |
| TGTCTCAAGAAAGGAAGACT+AGG | + | tig0021200:119244-119263 | Msa1389050:CDS | 40.0% | |
| TCCATCACAACAGTTAGCTA+AGG | + | tig0021200:119323-119342 | Msa1389050:CDS | 40.0% | |
| TCCTTAGCTAACTGTTGTGA+TGG | - | tig0021200:119327-119346 | None:intergenic | 40.0% | |
| TCACAACAGTTAGCTAAGGA+TGG | + | tig0021200:119327-119346 | Msa1389050:CDS | 40.0% | |
| GATTCTGCTTCCATACGATT+AGG | + | tig0021200:119406-119425 | Msa1389050:intron | 40.0% | |
| TTGTCCCAATTGTCTGAATG+TGG | - | tig0021200:119438-119457 | None:intergenic | 40.0% | |
| TTCAGACAATTGGGACAATG+TGG | + | tig0021200:119440-119459 | Msa1389050:intron | 40.0% | |
| CCAGTAGTTGTTTGATCAAG+AGG | - | tig0021200:119548-119567 | None:intergenic | 40.0% | |
| CCTCTTGATCAAACAACTAC+TGG | + | tig0021200:119545-119564 | Msa1389050:intron | 40.0% | |
| AAAAGTGATGAGGAAGCTGA+AGG | + | tig0021200:120101-120120 | Msa1389050:CDS | 40.0% | |
| GTTGGAGGAACTTTAACAAC+TGG | - | tig0021200:120167-120186 | None:intergenic | 40.0% | |
| GTTGTTAAAGTTCCTCCAAC+AGG | + | tig0021200:120167-120186 | Msa1389050:CDS | 40.0% | |
| CTACATTGAATCTCTCCCTA+AGG | + | tig0021200:120307-120326 | Msa1389050:CDS | 40.0% | |
| ! | ACTTATAGATCGACTCACCA+AGG | - | tig0021200:120527-120546 | None:intergenic | 40.0% |
| ACTGTGGAATACTTTGATCC+GGG | + | tig0021200:120552-120571 | Msa1389050:CDS | 40.0% | |
| ATTGTTGAGAGGAATTGTCC+CGG | - | tig0021200:120573-120592 | None:intergenic | 40.0% | |
| CTGATATCAAGTGAAGACTG+TGG | - | tig0021200:120789-120808 | None:intergenic | 40.0% | |
| GTTACTCTATATTCGGAGAC+TGG | + | tig0021200:121070-121089 | Msa1389050:intron | 40.0% | |
| CAAGATTGGATCACGAAGTT+TGG | - | tig0021200:121105-121124 | None:intergenic | 40.0% | |
| ACTGCTTCCAAAATGATCAC+AGG | + | tig0021200:121195-121214 | Msa1389050:intron | 40.0% | |
| TCCAAAATGATCACAGGATG+TGG | + | tig0021200:121201-121220 | Msa1389050:intron | 40.0% | |
| CCAAAATGATCACAGGATGT+GGG | + | tig0021200:121202-121221 | Msa1389050:intron | 40.0% | |
| AAGAATCCAACGAGAATCTC+CGG | - | tig0021200:121351-121370 | None:intergenic | 40.0% | |
| ATTCTCGTTGGATTCTTTGC+CGG | + | tig0021200:121354-121373 | Msa1389050:CDS | 40.0% | |
| TCAAACATCTCCAAACTCTG+AGG | + | tig0021200:121384-121403 | Msa1389050:CDS | 40.0% | |
| GATTTCATGGGATGGACAAA+AGG | + | tig0021200:121463-121482 | Msa1389050:CDS | 40.0% | |
| ! | CCTATTGGCTGAGTTTCCAA+TGG | - | tig0021200:118149-118168 | None:intergenic | 45.0% |
| CCATTGGAAACTCAGCCAAT+AGG | + | tig0021200:118146-118165 | Msa1389050:CDS | 45.0% | |
| ! | CTTCTAGGAGAAGACATGTC+AGG | + | tig0021200:118767-118786 | Msa1389050:CDS | 45.0% |
| GTGTCACATGACATGACATG+TGG | + | tig0021200:118939-118958 | Msa1389050:intron | 45.0% | |
| TGGAGCCAATGTCTCAAGAA+AGG | + | tig0021200:119235-119254 | Msa1389050:CDS | 45.0% | |
| CTCAAGAAAGGAAGACTAGG+TGG | + | tig0021200:119247-119266 | Msa1389050:CDS | 45.0% | |
| AGCTAAGGATGGATCAACCA+TGG | + | tig0021200:119338-119357 | Msa1389050:CDS | 45.0% | |
| TAAGGATGGATCAACCATGG+AGG | + | tig0021200:119341-119360 | Msa1389050:CDS | 45.0% | |
| AAGCTGAGTGTTTACCTCCA+TGG | - | tig0021200:119358-119377 | None:intergenic | 45.0% | |
| GTGGAGAATCCCTAATCGTA+TGG | - | tig0021200:119419-119438 | None:intergenic | 45.0% | |
| TGTGGCCGTTTGATCATGAT+CGG | + | tig0021200:119458-119477 | Msa1389050:intron | 45.0% | |
| ACCGTCCGATCATGATCAAA+CGG | - | tig0021200:119466-119485 | None:intergenic | 45.0% | |
| CGATCTGCTCATGAACATTC+CGG | + | tig0021200:119825-119844 | Msa1389050:CDS | 45.0% | |
| ACATCTGATAACCCTGTTGG+AGG | - | tig0021200:120182-120201 | None:intergenic | 45.0% | |
| GCTACATCTGATAACCCTGT+TGG | - | tig0021200:120185-120204 | None:intergenic | 45.0% | |
| ! | CCATGGCTGCTTTAAGTACT+TGG | - | tig0021200:120244-120263 | None:intergenic | 45.0% |
| CCAAGTACTTAAAGCAGCCA+TGG | + | tig0021200:120241-120260 | Msa1389050:CDS | 45.0% | |
| TGCTCAAGTACTATCCGAGA+TGG | + | tig0021200:120271-120290 | Msa1389050:CDS | 45.0% | |
| GTTGTCAGGTATCTCCATCT+CGG | - | tig0021200:120288-120307 | None:intergenic | 45.0% | |
| CAGAATGGTAGAGAAAGCCT+TGG | + | tig0021200:120507-120526 | Msa1389050:intron | 45.0% | |
| GGGACAATTCCTCTCAACAA+TGG | + | tig0021200:120572-120591 | Msa1389050:CDS | 45.0% | |
| TGGTCATGTCCATTGTTGAG+AGG | - | tig0021200:120584-120603 | None:intergenic | 45.0% | |
| ATGGAGTTCGGCAATAAGCA+TGG | + | tig0021200:120692-120711 | Msa1389050:CDS | 45.0% | |
| GGCAATAAGCATGGAGAAGA+GGG | + | tig0021200:120701-120720 | Msa1389050:CDS | 45.0% | |
| ! | CCCACATCCTGTGATCATTT+TGG | - | tig0021200:121205-121224 | None:intergenic | 45.0% |
| GACAAAGAATCCATCGTTGG+CGG | + | tig0021200:121318-121337 | Msa1389050:CDS | 45.0% | |
| ! | ACATCTCCAAACTCTGAGGA+TGG | + | tig0021200:121388-121407 | Msa1389050:CDS | 45.0% |
| TCTGAGAGAGTCATTGATGG+TGG | - | tig0021200:121445-121464 | None:intergenic | 45.0% | |
| CTCTCTCAGATTTCATGGGA+TGG | + | tig0021200:121455-121474 | Msa1389050:CDS | 45.0% | |
| !!! | TGAATTTTTTTTTTAATTAA+TGG | + | tig0021200:118698-118717 | Msa1389050:intron | 5.0% |
| !! | ATACCAGTTGGTGGCTTAGG+AGG | - | tig0021200:118224-118243 | None:intergenic | 50.0% |
| GACATGTCAGGTGCAGGAAA+TGG | + | tig0021200:118779-118798 | Msa1389050:CDS | 50.0% | |
| GCCGTTTGATCATGATCGGA+CGG | + | tig0021200:119462-119481 | Msa1389050:intron | 50.0% | |
| ATTTGGACTCCACGCAGTCA+AGG | - | tig0021200:119598-119617 | None:intergenic | 50.0% | |
| CATTGCATCAAGCTTGCGCA+AGG | - | tig0021200:119851-119870 | None:intergenic | 50.0% | |
| CGCTTAATGATTCCGCGGTA+TGG | + | tig0021200:120424-120443 | Msa1389050:intron | 50.0% | |
| CGGCAATAAGCATGGAGAAG+AGG | + | tig0021200:120700-120719 | Msa1389050:CDS | 50.0% | |
| AGTGAAGACTGTGGAAGTCC+TGG | - | tig0021200:120780-120799 | None:intergenic | 50.0% | |
| GGAGATGTTTGATCAGCCAC+CGG | - | tig0021200:121376-121395 | None:intergenic | 50.0% | |
| ! | TCTCCAAACTCTGAGGATGG+TGG | + | tig0021200:121391-121410 | Msa1389050:CDS | 50.0% |
| ! | CTCCAAACTCTGAGGATGGT+GGG | + | tig0021200:121392-121411 | Msa1389050:CDS | 50.0% |
| ATCCCACCATCCTCAGAGTT+TGG | - | tig0021200:121397-121416 | None:intergenic | 50.0% | |
| !! | AACTCTGAGGATGGTGGGAT+AGG | + | tig0021200:121397-121416 | Msa1389050:CDS | 50.0% |
| ATGCCTCCTAAGCCACCAAC+TGG | + | tig0021200:118218-118237 | Msa1389050:CDS | 55.0% | |
| GGAGAAGACATGTCAGGTGC+AGG | + | tig0021200:118773-118792 | Msa1389050:CDS | 55.0% | |
| AAAGGGCAGTCGAGAGTGAC+TGG | - | tig0021200:120983-121002 | None:intergenic | 55.0% | |
| ATCCAGCCGGAGATTCTCGT+TGG | + | tig0021200:121342-121361 | Msa1389050:CDS | 55.0% | |
| ATCCAACGAGAATCTCCGGC+TGG | - | tig0021200:121347-121366 | None:intergenic | 55.0% | |
| CTCGTTGGATTCTTTGCCGG+TGG | + | tig0021200:121357-121376 | Msa1389050:CDS | 55.0% | |
| !! | CTGAGGATGGTGGGATAGGA+AGG | + | tig0021200:121401-121420 | Msa1389050:CDS | 55.0% |
| GCGGAGAATCCTTGACTGCG+TGG | + | tig0021200:119586-119605 | Msa1389050:intron | 60.0% | |
| GCATCAAGCTTGCGCAAGGC+CGG | - | tig0021200:119847-119866 | None:intergenic | 60.0% | |
| CATCGTTGGCGGCATCCAGC+CGG | + | tig0021200:121329-121348 | Msa1389050:CDS | 65.0% | |
| CGGCTGGATGCCGCCAACGA+TGG | - | tig0021200:121331-121350 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021200 | gene | 117990 | 121639 | 117990 | ID=Msa1389050;Name=Msa1389050 |
| tig0021200 | mRNA | 117990 | 121639 | 117990 | ID=Msa1389050-mRNA-1;Parent=Msa1389050;Name=Msa1389050-mRNA-1;_AED=0.04;_eAED=0.04;_QI=30|0.83|0.57|1|1|1|7|0|527 |
| tig0021200 | exon | 117990 | 118239 | 117990 | ID=Msa1389050-mRNA-1:exon:11377;Parent=Msa1389050-mRNA-1 |
| tig0021200 | exon | 118732 | 118848 | 118732 | ID=Msa1389050-mRNA-1:exon:11378;Parent=Msa1389050-mRNA-1 |
| tig0021200 | exon | 119208 | 119362 | 119208 | ID=Msa1389050-mRNA-1:exon:11379;Parent=Msa1389050-mRNA-1 |
| tig0021200 | exon | 119802 | 119876 | 119802 | ID=Msa1389050-mRNA-1:exon:11380;Parent=Msa1389050-mRNA-1 |
| tig0021200 | exon | 120053 | 120328 | 120053 | ID=Msa1389050-mRNA-1:exon:11381;Parent=Msa1389050-mRNA-1 |
| tig0021200 | exon | 120510 | 120827 | 120510 | ID=Msa1389050-mRNA-1:exon:11382;Parent=Msa1389050-mRNA-1 |
| tig0021200 | exon | 121217 | 121639 | 121217 | ID=Msa1389050-mRNA-1:exon:11383;Parent=Msa1389050-mRNA-1 |
| tig0021200 | five_prime_UTR | 117990 | 118019 | 117990 | ID=Msa1389050-mRNA-1:five_prime_utr;Parent=Msa1389050-mRNA-1 |
| tig0021200 | CDS | 118020 | 118239 | 118020 | ID=Msa1389050-mRNA-1:cds;Parent=Msa1389050-mRNA-1 |
| tig0021200 | CDS | 118732 | 118848 | 118732 | ID=Msa1389050-mRNA-1:cds;Parent=Msa1389050-mRNA-1 |
| tig0021200 | CDS | 119208 | 119362 | 119208 | ID=Msa1389050-mRNA-1:cds;Parent=Msa1389050-mRNA-1 |
| tig0021200 | CDS | 119802 | 119876 | 119802 | ID=Msa1389050-mRNA-1:cds;Parent=Msa1389050-mRNA-1 |
| tig0021200 | CDS | 120053 | 120328 | 120053 | ID=Msa1389050-mRNA-1:cds;Parent=Msa1389050-mRNA-1 |
| tig0021200 | CDS | 120510 | 120827 | 120510 | ID=Msa1389050-mRNA-1:cds;Parent=Msa1389050-mRNA-1 |
| tig0021200 | CDS | 121217 | 121639 | 121217 | ID=Msa1389050-mRNA-1:cds;Parent=Msa1389050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
