AlfalfaGEDB | Msa0739470

M. sativa cultivar zhongmu-4 / Msa0739470

KEGG: -
GO: -
PFAM: PF05922.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739470	XP_003616914.1	86.185	789	32	5	1	712	1	789	0.0	1357

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739470	sp\|I1N462\|SBT1_SOYBN	52.926	786	279	14	8	711	10	786	0.0	752

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739470	G7K7I8	86.185	789	32	5	1	712	1	789	0.0	1357

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0124130	Msa0739470	0.806557	7.763548e-50	-8.615850e-47
Msa0252630	Msa0739470	0.814326	1.630759e-51	-8.615850e-47
Msa0291330	Msa0739470	0.828994	6.597276e-55	-8.615850e-47
Msa0343660	Msa0739470	0.810053	1.395686e-50	-8.615850e-47
Msa0441590	Msa0739470	0.805848	1.094923e-49	-8.615850e-47
Msa0451400	Msa0739470	0.807385	5.188143e-50	-8.615850e-47
Msa0591800	Msa0739470	0.855965	4.427115e-62	-8.615850e-47
Msa0669840	Msa0739470	0.832164	1.105075e-55	-8.615850e-47
Msa0709450	Msa0739470	0.814822	1.266525e-51	-8.615850e-47
Msa0711320	Msa0739470	0.815789	7.721308e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0739470	MtrunA17_Chr5g0439271	87.874	602	23	3	158	712	4	602	1071
Msa0739470	MtrunA17_Chr7g0250371	55.856	777	254	16	13	711	19	784	786
Msa0739470	MtrunA17_Chr7g0250481	53.895	783	261	14	21	711	23	797	785
Msa0739470	MtrunA17_Chr7g0250391	55.698	781	261	16	8	711	10	782	769
Msa0739470	MtrunA17_Chr7g0250411	54.113	778	265	18	13	711	19	783	746
Msa0739470	MtrunA17_Chr7g0250331	54.430	790	252	18	22	711	25	806	738
Msa0739470	MtrunA17_Chr3g0120521	48.473	753	307	14	28	711	29	769	667
Msa0739470	MtrunA17_Chr4g0057531	49.009	757	311	14	23	711	27	776	659
Msa0739470	MtrunA17_Chr4g0057471	47.368	722	294	16	62	711	1	708	610
Msa0739470	MtrunA17_Chr4g0076611	46.844	713	285	15	73	711	1	693	598

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0739470	AT2G04160.1	48.930	748	309	11	29	711	31	770	0.0	684
Msa0739470	AT5G59810.1	48.800	750	309	13	25	711	37	774	0.0	662
Msa0739470	AT5G67360.1	38.144	776	381	21	9	711	5	754	4.41e-155	468
Msa0739470	AT2G05920.1	38.663	763	363	23	18	709	19	747	2.69e-151	458
Msa0739470	AT4G34980.1	36.111	792	382	24	5	711	6	758	1.29e-142	436
Msa0739470	AT5G45650.2	37.150	786	372	22	27	711	24	788	3.87e-140	430
Msa0739470	AT5G45650.1	37.150	786	372	22	27	711	24	788	3.87e-140	430
Msa0739470	AT5G51750.1	36.962	790	395	23	4	711	6	774	5.31e-138	424
Msa0739470	AT3G14240.1	36.078	765	385	22	29	711	27	769	1.70e-135	418
Msa0739470	AT1G20160.1	37.161	775	383	23	13	711	15	761	2.23e-135	417

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Find 154 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTGCCATCATGACTAC+CGG	0.576826	5_1:-57780735	Msa0739470:intron
AACCCAGCCATAATTGGAGA+TGG	0.588591	5_1:+57781487	None:intergenic
AACCTTTCGGATAATTCTAG+AGG	0.563782	5_1:-57780110	Msa0739470:CDS
AACGGTAACGGCACAGCGAA+AGG	0.522680	5_1:-57782659	Msa0739470:CDS
AACTCAAGATCATCAAGGGA+GGG	0.624343	5_1:+57784615	None:intergenic
AAGCCATCTCCAATTATGGC+TGG	0.460623	5_1:-57781490	Msa0739470:CDS
AATACTGGAAAACCATGAGG+AGG	0.686042	5_1:+57780076	None:intergenic
AATATAAATTGCACACTACA+AGG	0.554754	5_1:-57784243	Msa0739470:CDS
AATGGTTATCCTAAAATGTA+TGG	0.412985	5_1:-57779816	None:intergenic
AATGTACTACTATTGAACAA+TGG	0.655908	5_1:-57779834	Msa0739470:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTGTATGAATGAGTATAAGA+AGG	+	chr5_1:57779924-57779943	None:intergenic	30.0%
ACATATATTGTATACTTGGG+AGG	-	chr5_1:57780023-57780042	Msa0739470:CDS	30.0%
GATTTACTTGCTTCAATCTT+AGG	-	chr5_1:57780107-57780126	Msa0739470:CDS	30.0%
CAACAATTACTTCTTTACCA+TGG	-	chr5_1:57780313-57780332	Msa0739470:CDS	30.0%
AAAATGACTCAACAAATCCA+TGG	+	chr5_1:57780333-57780352	None:intergenic	30.0%
ATCATGGCTAATTTAGATTC+TGG	-	chr5_1:57780544-57780563	Msa0739470:intron	30.0%
TGTGCAACATATCATTGAAT+TGG	+	chr5_1:57780673-57780692	None:intergenic	30.0%
ACTATATTCCTTCTTAGTCA+TGG	-	chr5_1:57781106-57781125	Msa0739470:intron	30.0%
TTGATTCTCATACTTCAACT+TGG	-	chr5_1:57781198-57781217	Msa0739470:intron	30.0%
TGATTCTCATACTTCAACTT+GGG	-	chr5_1:57781199-57781218	Msa0739470:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	57779819	57784883	57779819	ID=Msa0739470;Name=Msa0739470
chr5_1	mRNA	57779819	57784883	57779819	ID=Msa0739470-mRNA-1;Parent=Msa0739470;Name=Msa0739470-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.44\|0.4\|1\|1\|1\|10\|196\|712
chr5_1	exon	57779819	57780547	57779819	ID=Msa0739470-mRNA-1:exon:16422;Parent=Msa0739470-mRNA-1
chr5_1	exon	57780736	57780949	57780736	ID=Msa0739470-mRNA-1:exon:16421;Parent=Msa0739470-mRNA-1
chr5_1	exon	57781465	57781517	57781465	ID=Msa0739470-mRNA-1:exon:16420;Parent=Msa0739470-mRNA-1
chr5_1	exon	57781786	57781982	57781786	ID=Msa0739470-mRNA-1:exon:16419;Parent=Msa0739470-mRNA-1
chr5_1	exon	57782096	57782199	57782096	ID=Msa0739470-mRNA-1:exon:16418;Parent=Msa0739470-mRNA-1
chr5_1	exon	57782295	57782875	57782295	ID=Msa0739470-mRNA-1:exon:16417;Parent=Msa0739470-mRNA-1
chr5_1	exon	57784137	57784301	57784137	ID=Msa0739470-mRNA-1:exon:16416;Parent=Msa0739470-mRNA-1
chr5_1	exon	57784395	57784492	57784395	ID=Msa0739470-mRNA-1:exon:16415;Parent=Msa0739470-mRNA-1
chr5_1	exon	57784570	57784679	57784570	ID=Msa0739470-mRNA-1:exon:16414;Parent=Msa0739470-mRNA-1
chr5_1	exon	57784800	57784883	57784800	ID=Msa0739470-mRNA-1:exon:16413;Parent=Msa0739470-mRNA-1
chr5_1	CDS	57784800	57784883	57784800	ID=Msa0739470-mRNA-1:cds;Parent=Msa0739470-mRNA-1
chr5_1	CDS	57784570	57784679	57784570	ID=Msa0739470-mRNA-1:cds;Parent=Msa0739470-mRNA-1
chr5_1	CDS	57784395	57784492	57784395	ID=Msa0739470-mRNA-1:cds;Parent=Msa0739470-mRNA-1
chr5_1	CDS	57784137	57784301	57784137	ID=Msa0739470-mRNA-1:cds;Parent=Msa0739470-mRNA-1
chr5_1	CDS	57782295	57782875	57782295	ID=Msa0739470-mRNA-1:cds;Parent=Msa0739470-mRNA-1
chr5_1	CDS	57782096	57782199	57782096	ID=Msa0739470-mRNA-1:cds;Parent=Msa0739470-mRNA-1
chr5_1	CDS	57781786	57781982	57781786	ID=Msa0739470-mRNA-1:cds;Parent=Msa0739470-mRNA-1
chr5_1	CDS	57781465	57781517	57781465	ID=Msa0739470-mRNA-1:cds;Parent=Msa0739470-mRNA-1
chr5_1	CDS	57780736	57780949	57780736	ID=Msa0739470-mRNA-1:cds;Parent=Msa0739470-mRNA-1
chr5_1	CDS	57780015	57780547	57780015	ID=Msa0739470-mRNA-1:cds;Parent=Msa0739470-mRNA-1
chr5_1	three_prime_UTR	57779819	57780014	57779819	ID=Msa0739470-mRNA-1:three_prime_utr;Parent=Msa0739470-mRNA-1

Gene Sequence

>Msa0739470

ATGTCATATCCTATTACCAAACTTTTTCTATCATCATTCATTCTTTGCAGTTTCTTGCTAGAACACACTGATGCCCTTAGAAAGACATATATTGTATACTTGGGAGGACATTCTCATGGTCCAAATCCCTCCCTTGATGATCTTGAGTTAGCCACAAATTCACATTATGATTTACTTGCTTCAATCTTAGGAAGCCATGAGAAGGCAAAGGAAACAGTGATGTACTCTTACAATAAGCATATAAATGGATTTGCTGCACTGCTTGAAGATGAAGAGGCATCAAAGATTGCAAATAACTCAAATGTAGTTTCTGTTTTCTTGAGCAAAGAATATAAATTGCACACTACAAGGTCGTGGGACTTTCTTGGACTGGAAAAAGATGGAGGAATTTCTCTTGATTCTGCTTGGTGGAAGGCAAGATTTGGTGAAGATACAATCATGGCTAATTTAGATTCTGTACCTAACACATTCCTATGTTATGTGACAAACTATAGAAAACTAATTGGAGCAAGAATATTCAGCCAAAACTACGAATCACAATATGGAAAACTCAATCCCTCAAACCTCACAGCACGTGACTTTATTGGCCATGGCACACACACATTATCAACAGCAGCAGGTAACTTTTCACCTGATGTAACAATATTCGGCAACGGTAACGGCACAGCGAAAGGTGGTTCTCCTAGAGCACGTGTAGCATCCTACAAAGTATGTTGGTCAAAGACAGATGCAGGTGGATGTCATGAAGCTGATATTCTAGCAGCATTTGATCAAGCTATATATGATGGTGTTGATGTGATTTCAACTTCTTTGGGTGGCTCTAGTCCATATATTGAAGCTTTGTTCACTGATGGAATTTCAATTGGGTCATTTCATGCTTTTGCTAAGAATGTTGTCGTTGTTTGTTCTGCTGGGAATGATGGACCTGCTCATAGGAGTGTTACAAATATTGCACCTTGGTCTTTCACTGTTGCAGCTAGTACAATTGATAGGGAATTTGTTAGCCATATTTCTATTGGTAACAAAAATTACATAAAGGGTGCCAGTCTTAGTAAAGGCTTACCATCAGGTCCATCAAAGAAAATATATCAAATGATTCATTCTATCGATGCTAGACTTCTTAATGCTTCAATTCAAGATGCTCGTTTTTGCAAGCCTAGAACACTTGATCCTACCAAAGTAAAGGGAAAGATATTAGTTTGTACTCGACTTGACGAAACTACATCTATTGCTCAAGGCTTTGAAGCTGCTCTTGCAGGAGCAGTAGGAGTTTTCGTGATCAATGATGAGAAAAGTGGAAGTTTACTTCTAGCTGAGCCTCATCCTTTACCTGGTGCGAGATTAAAGCCATCTCCAATTATGGCTGGGTTTTCATCTAGGGGTCCTAGTGCACCTGACATAACTGCTCCTGGAGTGAACATATTGGCTGCTTATTCACTAGCCACCAGTCCATCGAATCTACCATCAGATACACGCCGCATTCCTTACAATCTGCAACAAGGAACTTCAATGTCTTGTCCTCATGTTGCTGGCATTGCTGGTCTTCTCAAGACACTTCATCCTAGTTGGAGCCCAGCTGCTATCAAATCTGCCATCATGACTACCGCTACAACACTAGATAACAACAATCAACCAATCAGAGACGCGTTCGATAAGATAGCGACTCCATTTGAATATGGTTCTGGACATATTCAGCCTAACCTTGCAATGGATCCAGGACTTGTTTATGATCTAAGCACAAATGATTACTTGAACTTCATTTGTGTTTTTGGTCACCGTCACAATTTATTAAAGTTCTTTAATTACAACTCTTACATTTGTCCTGAGTTTTACAACATTGAAAACCTCAATTATCCTTCAATTACTGTGTATAATCGAGGACCGAACCTTATAAACGTTACTCGTACCGTCACAAATGTTGGGTCTCCTAGCACATATGTTGTGGAAATTCAACAACTTGAAGAATTTAAGGTTCATGTTCAACCAAGTTCATTGACATTTAAGGAAATTGGAGAAAAGAAAACCTTTCGGATAATTCTAGAGGCAATAGGTATGCCTCCTCATGGTTTTCCAGTATTTGGGAAATTGACTTGGACAAATGGCAACCACAGAGTAACTAGTCCTATAGTAGTCTTGTAA

Protein sequence

>Msa0739470

MSYPITKLFLSSFILCSFLLEHTDALRKTYIVYLGGHSHGPNPSLDDLELATNSHYDLLASILGSHEKAKETVMYSYNKHINGFAALLEDEEASKIANNSNVVSVFLSKEYKLHTTRSWDFLGLEKDGGISLDSAWWKARFGEDTIMANLDSVPNTFLCYVTNYRKLIGARIFSQNYESQYGKLNPSNLTARDFIGHGTHTLSTAAGNFSPDVTIFGNGNGTAKGGSPRARVASYKVCWSKTDAGGCHEADILAAFDQAIYDGVDVISTSLGGSSPYIEALFTDGISIGSFHAFAKNVVVVCSAGNDGPAHRSVTNIAPWSFTVAASTIDREFVSHISIGNKNYIKGASLSKGLPSGPSKKIYQMIHSIDARLLNASIQDARFCKPRTLDPTKVKGKILVCTRLDETTSIAQGFEAALAGAVGVFVINDEKSGSLLLAEPHPLPGARLKPSPIMAGFSSRGPSAPDITAPGVNILAAYSLATSPSNLPSDTRRIPYNLQQGTSMSCPHVAGIAGLLKTLHPSWSPAAIKSAIMTTATTLDNNNQPIRDAFDKIATPFEYGSGHIQPNLAMDPGLVYDLSTNDYLNFICVFGHRHNLLKFFNYNSYICPEFYNIENLNYPSITVYNRGPNLINVTRTVTNVGSPSTYVVEIQQLEEFKVHVQPSSLTFKEIGEKKTFRIILEAIGMPPHGFPVFGKLTWTNGNHRVTSPIVVL*