Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899950 | XP_003620607.2 | 97.538 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899950 | sp|Q9LV40|ROGF8_ARATH | 65.563 | 453 | 139 | 6 | 76 | 527 | 87 | 523 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0899950 | 0.802570 | 5.269588e-49 | -8.615850e-47 |
| Msa0055450 | Msa0899950 | 0.812572 | 3.962867e-51 | -8.615850e-47 |
| Msa0669840 | Msa0899950 | 0.829424 | 5.188224e-55 | -8.615850e-47 |
| Msa0725860 | Msa0899950 | 0.804204 | 2.416573e-49 | -8.615850e-47 |
| Msa0739470 | Msa0899950 | 0.803829 | 2.892097e-49 | -8.615850e-47 |
| Msa0739480 | Msa0899950 | 0.804018 | 2.642019e-49 | -8.615850e-47 |
| Msa0786040 | Msa0899950 | 0.841198 | 5.496220e-58 | -8.615850e-47 |
| Msa0823400 | Msa0899950 | 0.807076 | 6.030550e-50 | -8.615850e-47 |
| Msa0124130 | Msa0899950 | 0.817230 | 3.673153e-52 | -8.615850e-47 |
| Msa0149140 | Msa0899950 | 0.807916 | 4.000237e-50 | -8.615850e-47 |
| Msa0153420 | Msa0899950 | 0.800363 | 1.492970e-48 | -8.615850e-47 |
| Msa0212150 | Msa0899950 | 0.800391 | 1.473456e-48 | -8.615850e-47 |
| Msa0373960 | Msa0899950 | 0.861806 | 7.919787e-64 | -8.615850e-47 |
| Msa0406000 | Msa0899950 | 0.834518 | 2.862155e-56 | -8.615850e-47 |
| Msa0423100 | Msa0899950 | 0.853509 | 2.279302e-61 | -8.615850e-47 |
| Msa0424340 | Msa0899950 | 0.822263 | 2.601584e-53 | -8.615850e-47 |
| Msa0451400 | Msa0899950 | 0.830742 | 2.474362e-55 | -8.615850e-47 |
| Msa0469260 | Msa0899950 | 0.818576 | 1.823588e-52 | -8.615850e-47 |
| Msa0252770 | Msa0899950 | 0.815320 | 9.821112e-52 | -8.615850e-47 |
| Msa0291330 | Msa0899950 | 0.816461 | 5.465954e-52 | -8.615850e-47 |
| Msa0322830 | Msa0899950 | 0.826555 | 2.543764e-54 | -8.615850e-47 |
| Msa0322840 | Msa0899950 | 0.820797 | 5.674204e-53 | -8.615850e-47 |
| Msa0322860 | Msa0899950 | 0.833628 | 4.780335e-56 | -8.615850e-47 |
| Msa0329460 | Msa0899950 | 0.814312 | 1.642917e-51 | -8.615850e-47 |
| Msa0329620 | Msa0899950 | 0.821701 | 3.509644e-53 | -8.615850e-47 |
| Msa0351770 | Msa0899950 | 0.817933 | 2.550335e-52 | -8.615850e-47 |
| Msa0359250 | Msa0899950 | 0.818775 | 1.644137e-52 | -8.615850e-47 |
| Msa0492190 | Msa0899950 | 0.820395 | 7.018417e-53 | -8.615850e-47 |
| Msa0546830 | Msa0899950 | 0.811026 | 8.599943e-51 | -8.615850e-47 |
| Msa0591790 | Msa0899950 | 0.829912 | 3.946943e-55 | -8.615850e-47 |
| Msa0591800 | Msa0899950 | 0.843944 | 1.026154e-58 | -8.615850e-47 |
| Msa0899950 | Msa0927120 | 0.905833 | 2.824091e-80 | -8.615850e-47 |
| Msa0899950 | Msa0929870 | 0.801003 | 1.105312e-48 | -8.615850e-47 |
| Msa0899950 | Msa0941820 | 0.808155 | 3.558023e-50 | -8.615850e-47 |
| Msa0899950 | Msa0961560 | 0.819356 | 1.212562e-52 | -8.615850e-47 |
| Msa0899950 | Msa0964840 | 0.808863 | 2.513104e-50 | -8.615850e-47 |
| Msa0899950 | Msa0965310 | 0.951624 | 1.379666e-109 | -8.615850e-47 |
| Msa0899950 | Msa0979510 | 0.802743 | 4.854689e-49 | -8.615850e-47 |
| Msa0899950 | Msa0996270 | 0.808738 | 2.672422e-50 | -8.615850e-47 |
| Msa0899950 | Msa0999300 | 0.804970 | 1.673053e-49 | -8.615850e-47 |
| Msa0899950 | Msa0999340 | 0.867610 | 1.205703e-65 | -8.615850e-47 |
| Msa0899950 | Msa0999350 | 0.866626 | 2.484969e-65 | -8.615850e-47 |
| Msa0899950 | Msa0999360 | 0.846605 | 1.955488e-59 | -8.615850e-47 |
| Msa0899950 | Msa0999390 | 0.874878 | 4.787109e-68 | -8.615850e-47 |
| Msa0899950 | Msa0999400 | 0.857798 | 1.276947e-62 | -8.615850e-47 |
| Msa0899950 | Msa0999410 | 0.851935 | 6.418848e-61 | -8.615850e-47 |
| Msa0899950 | Msa0999700 | 0.947033 | 1.474556e-105 | -8.615850e-47 |
| Msa0899950 | Msa1171310 | 0.807702 | 4.443272e-50 | -8.615850e-47 |
| Msa0899950 | Msa1179360 | 0.803055 | 4.184354e-49 | -8.615850e-47 |
| Msa0899950 | Msa1201110 | 0.816932 | 4.284651e-52 | -8.615850e-47 |
| Msa0899950 | Msa1201160 | 0.843410 | 1.425671e-58 | -8.615850e-47 |
| Msa0899950 | Msa1228190 | 0.881142 | 3.069513e-70 | -8.615850e-47 |
| Msa0899950 | Msa1271260 | 0.862897 | 3.659196e-64 | -8.615850e-47 |
| Msa0899950 | Msa1275250 | 0.809386 | 1.941322e-50 | -8.615850e-47 |
| Msa0899950 | Msa1292010 | 0.807547 | 4.791797e-50 | -8.615850e-47 |
| Msa0899950 | Msa1294290 | 0.847156 | 1.382305e-59 | -8.615850e-47 |
| Msa0899950 | Msa1339440 | 0.817084 | 3.960972e-52 | -8.615850e-47 |
| Msa0899950 | Msa1389050 | 0.978826 | 1.204839e-146 | -8.615850e-47 |
| Msa0899950 | Msa1435480 | 0.840049 | 1.098793e-57 | -8.615850e-47 |
| Msa0899950 | Msa1458910 | 0.839798 | 1.277077e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899950 | MtrunA17_Chr6g0485861 | 97.538 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 0.0 | 1061 |
| Msa0899950 | MtrunA17_Chr2g0331631 | 60.413 | 533 | 173 | 12 | 6 | 527 | 28 | 533 | 0.0 | 580 |
| Msa0899950 | MtrunA17_Chr4g0004771 | 64.579 | 463 | 143 | 11 | 74 | 527 | 90 | 540 | 0.0 | 572 |
| Msa0899950 | MtrunA17_Chr7g0240501 | 52.451 | 408 | 156 | 5 | 73 | 460 | 183 | 572 | 1.34e-142 | 425 |
| Msa0899950 | MtrunA17_Chr4g0008771 | 53.704 | 378 | 159 | 4 | 62 | 424 | 84 | 460 | 1.41e-135 | 404 |
| Msa0899950 | MtrunA17_Chr4g0038651 | 52.533 | 375 | 160 | 5 | 73 | 430 | 86 | 459 | 1.76e-131 | 394 |
| Msa0899950 | MtrunA17_Chr3g0112731 | 50.653 | 383 | 163 | 5 | 73 | 436 | 99 | 474 | 4.29e-130 | 391 |
| Msa0899950 | MtrunA17_Chr5g0436141 | 51.316 | 380 | 159 | 5 | 76 | 436 | 84 | 456 | 8.58e-130 | 390 |
| Msa0899950 | MtrunA17_Chr8g0348921 | 47.074 | 376 | 174 | 5 | 73 | 424 | 96 | 470 | 6.00e-119 | 358 |
| Msa0899950 | MtrunA17_Chr7g0247761 | 43.780 | 418 | 167 | 7 | 74 | 424 | 113 | 529 | 1.41e-109 | 336 |
| Msa0899950 | MtrunA17_Chr5g0408591 | 45.378 | 357 | 183 | 6 | 73 | 419 | 117 | 471 | 9.81e-98 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899950 | AT3G24620.1 | 65.563 | 453 | 139 | 6 | 76 | 527 | 87 | 523 | 0.0 | 577 |
| Msa0899950 | AT4G13240.1 | 62.979 | 470 | 150 | 7 | 65 | 527 | 65 | 517 | 0.0 | 575 |
| Msa0899950 | AT1G79860.1 | 62.582 | 457 | 127 | 11 | 78 | 527 | 96 | 515 | 0.0 | 541 |
| Msa0899950 | AT1G52240.1 | 61.894 | 454 | 150 | 7 | 78 | 527 | 108 | 542 | 0.0 | 538 |
| Msa0899950 | AT5G19560.1 | 57.328 | 464 | 176 | 7 | 73 | 527 | 43 | 493 | 3.49e-174 | 501 |
| Msa0899950 | AT5G19560.5 | 57.328 | 464 | 176 | 7 | 73 | 527 | 43 | 493 | 3.49e-174 | 501 |
| Msa0899950 | AT5G19560.4 | 57.328 | 464 | 176 | 7 | 73 | 527 | 62 | 512 | 7.19e-174 | 500 |
| Msa0899950 | AT3G16130.1 | 50.962 | 520 | 213 | 11 | 19 | 525 | 44 | 534 | 3.23e-164 | 477 |
| Msa0899950 | AT5G19560.2 | 63.855 | 332 | 116 | 2 | 59 | 387 | 48 | 378 | 3.38e-148 | 430 |
| Msa0899950 | AT5G02010.1 | 48.798 | 416 | 189 | 6 | 73 | 465 | 69 | 483 | 1.01e-137 | 409 |
| Msa0899950 | AT4G38430.1 | 52.073 | 386 | 165 | 5 | 73 | 439 | 89 | 473 | 4.15e-135 | 403 |
| Msa0899950 | AT5G05940.1 | 50.943 | 371 | 160 | 4 | 74 | 423 | 102 | 471 | 1.39e-128 | 388 |
| Msa0899950 | AT5G19560.3 | 55.108 | 372 | 145 | 7 | 165 | 527 | 5 | 363 | 7.35e-128 | 377 |
| Msa0899950 | AT4G00460.2 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 9.03e-122 | 366 |
| Msa0899950 | AT4G00460.4 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 9.03e-122 | 366 |
| Msa0899950 | AT3G55660.1 | 45.192 | 416 | 190 | 7 | 37 | 418 | 57 | 468 | 2.15e-118 | 361 |
| Msa0899950 | AT1G01700.1 | 44.731 | 427 | 207 | 8 | 20 | 419 | 54 | 478 | 4.01e-117 | 354 |
| Msa0899950 | AT2G45890.1 | 47.185 | 373 | 170 | 6 | 74 | 424 | 93 | 460 | 2.96e-114 | 346 |
| Msa0899950 | AT1G01700.4 | 41.794 | 457 | 207 | 9 | 20 | 419 | 54 | 508 | 1.65e-110 | 338 |
| Msa0899950 | AT5G05940.2 | 49.552 | 335 | 147 | 4 | 74 | 387 | 102 | 435 | 6.06e-110 | 336 |
| Msa0899950 | AT3G55660.2 | 43.636 | 385 | 179 | 7 | 37 | 387 | 57 | 437 | 3.98e-103 | 317 |
| Msa0899950 | AT4G00460.3 | 47.401 | 327 | 153 | 6 | 111 | 419 | 8 | 333 | 2.41e-101 | 309 |
| Msa0899950 | AT1G31650.2 | 42.204 | 372 | 201 | 5 | 74 | 434 | 108 | 476 | 1.56e-96 | 303 |
| Msa0899950 | AT1G01700.3 | 41.832 | 404 | 199 | 9 | 20 | 389 | 54 | 455 | 2.68e-96 | 300 |
| Msa0899950 | AT1G31650.1 | 42.204 | 372 | 201 | 5 | 74 | 434 | 136 | 504 | 4.18e-96 | 303 |
| Msa0899950 | AT4G00460.1 | 52.535 | 217 | 93 | 3 | 74 | 281 | 104 | 319 | 4.34e-73 | 236 |
| Msa0899950 | AT1G01700.5 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 6.09e-71 | 231 |
| Msa0899950 | AT1G01700.2 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 6.09e-71 | 231 |
Find 111 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTAACATTGTCTTTC+TGG | 0.080935 | 6_1:-95349824 | None:intergenic |
| TTGTTATCACCTTGTTATAT+TGG | 0.258055 | 6_1:-95350416 | None:intergenic |
| CCATGGCTGCTTTAAGTACT+TGG | 0.282520 | 6_1:-95349842 | None:intergenic |
| TTGAAGCTTCTATTGTAATA+TGG | 0.285225 | 6_1:+95350238 | Msa0899950:CDS |
| TTAGAGATCAAAATGAATTC+TGG | 0.294452 | 6_1:+95349670 | Msa0899950:CDS |
| AATGTAATTATAGGACATTT+TGG | 0.333210 | 6_1:+95349641 | Msa0899950:intron |
| AATGACTCTCTCAGATTTCA+TGG | 0.338997 | 6_1:+95351051 | Msa0899950:CDS |
| ATCCCACCATCCTCAGAGTT+TGG | 0.353088 | 6_1:-95350995 | None:intergenic |
| AGATTTGCTAAGCTTCTTCT+AGG | 0.357290 | 6_1:+95348353 | Msa0899950:CDS |
| ATTATACCAGTTGGTGGCTT+AGG | 0.357434 | 6_1:-95347825 | None:intergenic |
| CGATCTGCTCATGAACATTC+CGG | 0.375648 | 6_1:+95349426 | Msa0899950:CDS |
| TATTCAAGGTTTATTTGATA+AGG | 0.386545 | 6_1:+95347644 | Msa0899950:CDS |
| GTTGGAGGAACTTTAACAAC+TGG | 0.388069 | 6_1:-95349765 | None:intergenic |
| GTTGTTAAAGTTCCTCCAAC+AGG | 0.390259 | 6_1:+95349768 | Msa0899950:CDS |
| ATATTGAGAGCAACTCCTAT+TGG | 0.393413 | 6_1:-95347762 | None:intergenic |
| TATACCAGCAAGGTTTGTTA+TGG | 0.393796 | 6_1:-95348432 | None:intergenic |
| TACTGTGGAATACTTTGATC+CGG | 0.414609 | 6_1:+95350152 | Msa0899950:CDS |
| CGGCTGGATGCCGCCAACGA+TGG | 0.421001 | 6_1:-95350929 | None:intergenic |
| ATTCTCGTTGGATTCTTTGC+CGG | 0.425301 | 6_1:+95350955 | Msa0899950:CDS |
| TTCAGAAACTGATTTGATGA+AGG | 0.432350 | 6_1:+95348328 | Msa0899950:intron |
| TGGAAAATCTTCATGGAGTT+CGG | 0.432609 | 6_1:+95350281 | Msa0899950:CDS |
| GTCTTCCTTTCTTGAGACAT+TGG | 0.438853 | 6_1:-95348841 | None:intergenic |
| ATAAAGATGGAAAATCTTCA+TGG | 0.441204 | 6_1:+95350274 | Msa0899950:CDS |
| AAGCTGAGTGTTTACCTCCA+TGG | 0.443142 | 6_1:-95348956 | None:intergenic |
| TTTGATAAGGATCATGATGA+AGG | 0.446490 | 6_1:+95347657 | Msa0899950:CDS |
| TATCAGATGTAGCTGTGAAA+TGG | 0.447982 | 6_1:+95349793 | Msa0899950:CDS |
| TTCAAGAGTAATAGAAAGCT+TGG | 0.450795 | 6_1:+95350847 | Msa0899950:CDS |
| ATGATCAAACAAGAGTTTCC+AGG | 0.451515 | 6_1:+95350360 | Msa0899950:CDS |
| AATGCCATAACAAACCTTGC+TGG | 0.452672 | 6_1:+95348428 | Msa0899950:CDS |
| AGTGAAGACTGTGGAAGTCC+TGG | 0.455369 | 6_1:-95350378 | None:intergenic |
| AAATGGTGTTTCTTCAGCAC+TGG | 0.456274 | 6_1:+95348397 | Msa0899950:CDS |
| AAGTTCTTGACCTCAAGAAT+AGG | 0.466447 | 6_1:+95350214 | Msa0899950:CDS |
| GACATGTCAGGTGCAGGAAA+TGG | 0.467588 | 6_1:+95348380 | Msa0899950:CDS |
| CTTCTATTGTAATATGGAAA+AGG | 0.469644 | 6_1:+95350244 | Msa0899950:CDS |
| CCATTGGAAACTCAGCCAAT+AGG | 0.473248 | 6_1:+95347747 | Msa0899950:CDS |
| TCTTGAATAGCTCTCTAGAA+TGG | 0.475283 | 6_1:-95350831 | None:intergenic |
| GGACAAAAGGAGATTTGAAA+AGG | 0.479375 | 6_1:+95351077 | Msa0899950:CDS |
| ATGCCTCCTAAGCCACCAAC+TGG | 0.479648 | 6_1:+95347819 | Msa0899950:CDS |
| CGATATTAATGTCGCGCGAT+AGG | 0.480793 | 6_1:-95351223 | None:intergenic |
| GCATCAAGCTTGCGCAAGGC+CGG | 0.484296 | 6_1:-95349445 | None:intergenic |
| TACTTGAGCATTTATTGCCA+TGG | 0.488291 | 6_1:-95349859 | None:intergenic |
| GATTTCATGGGATGGACAAA+AGG | 0.489636 | 6_1:+95351064 | Msa0899950:CDS |
| AGAGATTCAATGTAGTTGTC+AGG | 0.493552 | 6_1:-95349900 | None:intergenic |
| AAACCTTGAATATGTTTCCC+AGG | 0.494123 | 6_1:-95347633 | None:intergenic |
| TTGAAAAGGACTAATTCTAC+AGG | 0.501607 | 6_1:+95351091 | Msa0899950:CDS |
| GGTGGAGAAAAGAAATTGAA+TGG | 0.504792 | 6_1:+95348866 | Msa0899950:CDS |
| ATACCAGTTGGTGGCTTAGG+AGG | 0.512969 | 6_1:-95347822 | None:intergenic |
| AAAAGGAAGATGAATAAAGA+TGG | 0.515789 | 6_1:+95350261 | Msa0899950:CDS |
| CTCGTTGGATTCTTTGCCGG+TGG | 0.515807 | 6_1:+95350958 | Msa0899950:CDS |
| AACTCTGAGGATGGTGGGAT+AGG | 0.517108 | 6_1:+95350998 | Msa0899950:CDS |
| AAGAATCCAACGAGAATCTC+CGG | 0.517591 | 6_1:-95350949 | None:intergenic |
| CATTGCATCAAGCTTGCGCA+AGG | 0.519705 | 6_1:-95349449 | None:intergenic |
| CTGAGGATGGTGGGATAGGA+AGG | 0.520302 | 6_1:+95351002 | Msa0899950:CDS |
| AATTCAGCATGCAGAAATCA+AGG | 0.528944 | 6_1:+95347580 | None:intergenic |
| GTCAAGAACTTTATGTTCTG+TGG | 0.529156 | 6_1:-95350202 | None:intergenic |
| CTCTCTCAGATTTCATGGGA+TGG | 0.531255 | 6_1:+95351056 | Msa0899950:CDS |
| CTCAAAGAAAGAGTGACAAA+TGG | 0.531945 | 6_1:+95349736 | Msa0899950:CDS |
| CCTATTGGCTGAGTTTCCAA+TGG | 0.532644 | 6_1:-95347747 | None:intergenic |
| TCCTTAGCTAACTGTTGTGA+TGG | 0.535551 | 6_1:-95348925 | None:intergenic |
| ATCCCTGGGAAACATATTCA+AGG | 0.535882 | 6_1:+95347630 | Msa0899950:CDS |
| GGAGAAGACATGTCAGGTGC+AGG | 0.536981 | 6_1:+95348374 | Msa0899950:CDS |
| GGCAATAAGCATGGAGAAGA+GGG | 0.538220 | 6_1:+95350302 | Msa0899950:CDS |
| CATCGTTGGCGGCATCCAGC+CGG | 0.540395 | 6_1:+95350930 | Msa0899950:CDS |
| ACTGTGGAATACTTTGATCC+GGG | 0.540800 | 6_1:+95350153 | Msa0899950:CDS |
| GGAGATGTTTGATCAGCCAC+CGG | 0.544079 | 6_1:-95350974 | None:intergenic |
| TGGAGCCAATGTCTCAAGAA+AGG | 0.548345 | 6_1:+95348836 | Msa0899950:CDS |
| CTTCTAGGAGAAGACATGTC+AGG | 0.550196 | 6_1:+95348368 | Msa0899950:CDS |
| CTCCAAACTCTGAGGATGGT+GGG | 0.553349 | 6_1:+95350993 | Msa0899950:CDS |
| AGTTTCCAATGGAATATCAC+TGG | 0.553463 | 6_1:-95347736 | None:intergenic |
| TGCTCAAGTACTATCCGAGA+TGG | 0.555455 | 6_1:+95349872 | Msa0899950:CDS |
| AACCTTGAATATGTTTCCCA+GGG | 0.559119 | 6_1:-95347632 | None:intergenic |
| CCAAGTACTTAAAGCAGCCA+TGG | 0.563065 | 6_1:+95349842 | Msa0899950:CDS |
| TCACAACAGTTAGCTAAGGA+TGG | 0.570145 | 6_1:+95348928 | Msa0899950:CDS |
| TCTCCAAACTCTGAGGATGG+TGG | 0.572008 | 6_1:+95350992 | Msa0899950:CDS |
| ATGACTCTCTCAGATTTCAT+GGG | 0.572048 | 6_1:+95351052 | Msa0899950:CDS |
| GCTACATCTGATAACCCTGT+TGG | 0.573819 | 6_1:-95349783 | None:intergenic |
| CGGCAATAAGCATGGAGAAG+AGG | 0.574710 | 6_1:+95350301 | Msa0899950:CDS |
| CTACATTGAATCTCTCCCTA+AGG | 0.579199 | 6_1:+95349908 | Msa0899950:CDS |
| AAGCTTCAATCCTATTCTTG+AGG | 0.579814 | 6_1:-95350224 | None:intergenic |
| ATGGAGTTCGGCAATAAGCA+TGG | 0.581044 | 6_1:+95350293 | Msa0899950:CDS |
| ATCCAACGAGAATCTCCGGC+TGG | 0.581392 | 6_1:-95350945 | None:intergenic |
| ATCCAGCCGGAGATTCTCGT+TGG | 0.585511 | 6_1:+95350943 | Msa0899950:CDS |
| GACAAAGAATCCATCGTTGG+CGG | 0.587221 | 6_1:+95350919 | Msa0899950:CDS |
| ATATACCAGTGATATTCCAT+TGG | 0.587677 | 6_1:+95347731 | Msa0899950:CDS |
| TTGATAAGGATCATGATGAA+GGG | 0.588470 | 6_1:+95347658 | Msa0899950:CDS |
| AAATCTGAGAGAGTCATTGA+TGG | 0.588625 | 6_1:-95351046 | None:intergenic |
| ACATCTCCAAACTCTGAGGA+TGG | 0.591064 | 6_1:+95350989 | Msa0899950:CDS |
| GTTGTCAGGTATCTCCATCT+CGG | 0.591503 | 6_1:-95349886 | None:intergenic |
| ATTGTTGAGAGGAATTGTCC+CGG | 0.601613 | 6_1:-95350171 | None:intergenic |
| TCCATCACAACAGTTAGCTA+AGG | 0.603193 | 6_1:+95348924 | Msa0899950:CDS |
| ACATCTGATAACCCTGTTGG+AGG | 0.604210 | 6_1:-95349780 | None:intergenic |
| TTGTTAAAGTTCCTCCAACA+GGG | 0.606551 | 6_1:+95349769 | Msa0899950:CDS |
| CAGCAAAATCCAATATAACA+AGG | 0.607276 | 6_1:+95350407 | Msa0899950:CDS |
| AAAAGTGATGAGGAAGCTGA+AGG | 0.607695 | 6_1:+95349702 | Msa0899950:CDS |
| TGTCTCAAGAAAGGAAGACT+AGG | 0.613102 | 6_1:+95348845 | Msa0899950:CDS |
| TTGGAGGAACTTTAACAACT+GGG | 0.617010 | 6_1:-95349764 | None:intergenic |
| CTCAAGAAAGGAAGACTAGG+TGG | 0.617206 | 6_1:+95348848 | Msa0899950:CDS |
| AATGACAAAGAATCCATCGT+TGG | 0.619614 | 6_1:+95350916 | Msa0899950:CDS |
| AAAGAAAGAGTGACAAATGG+TGG | 0.626399 | 6_1:+95349739 | Msa0899950:CDS |
| CCAAAATGATCACAGGATGT+GGG | 0.631669 | 6_1:+95350803 | Msa0899950:intron |
| GGGACAATTCCTCTCAACAA+TGG | 0.632556 | 6_1:+95350173 | Msa0899950:CDS |
| CAGAATGGTAGAGAAAGCCT+TGG | 0.634845 | 6_1:+95350108 | Msa0899950:intron |
| GATCTATAAGTGCATTACTG+TGG | 0.648265 | 6_1:+95350137 | Msa0899950:CDS |
| AGCTAAGGATGGATCAACCA+TGG | 0.652900 | 6_1:+95348939 | Msa0899950:CDS |
| ATTTGTAGATCATGACGACT+CGG | 0.653527 | 6_1:+95349395 | Msa0899950:intron |
| ACTTATAGATCGACTCACCA+AGG | 0.679802 | 6_1:-95350125 | None:intergenic |
| TGGTCATGTCCATTGTTGAG+AGG | 0.679809 | 6_1:-95350182 | None:intergenic |
| TCAAACATCTCCAAACTCTG+AGG | 0.682927 | 6_1:+95350985 | Msa0899950:CDS |
| TCTGAGAGAGTCATTGATGG+TGG | 0.705269 | 6_1:-95351043 | None:intergenic |
| CTGATATCAAGTGAAGACTG+TGG | 0.722584 | 6_1:-95350387 | None:intergenic |
| TAAGGATGGATCAACCATGG+AGG | 0.766138 | 6_1:+95348942 | Msa0899950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTATCAATTTAAAAAA+AGG | + | chr6_1:95348145-95348164 | Msa0899950:intron | 10.0% |
| !! | AAAAATAAAAACTATAACAA+AGG | + | chr6_1:95348226-95348245 | Msa0899950:intron | 10.0% |
| !! | TATTTAATTAATGTATATCA+TGG | + | chr6_1:95348985-95349004 | Msa0899950:intron | 10.0% |
| !!! | AAAAATCACAATTTATTTTG+TGG | + | chr6_1:95348021-95348040 | Msa0899950:intron | 15.0% |
| !! | ATTTAAAAAAAGGTAATAAG+TGG | + | chr6_1:95348155-95348174 | Msa0899950:intron | 15.0% |
| !!! | TTTTTAAATGAAAACAACAT+TGG | + | chr6_1:95348757-95348776 | Msa0899950:intron | 15.0% |
| !! | TCTAATAGTAATTAAGAAAA+AGG | - | chr6_1:95349601-95349620 | None:intergenic | 15.0% |
| !! | TCTTAATTACTATTAGAATT+TGG | + | chr6_1:95349604-95349623 | Msa0899950:intron | 15.0% |
| !! | TTTAAATAATATCGTCTAAA+GGG | - | chr6_1:95350601-95350620 | None:intergenic | 15.0% |
| !! | TATTCAAGGTTTATTTGATA+AGG | + | chr6_1:95347644-95347663 | Msa0899950:CDS | 20.0% |
| !! | GCATAATAACTTAAAATGTA+GGG | - | chr6_1:95347857-95347876 | None:intergenic | 20.0% |
| !! | TGCATAATAACTTAAAATGT+AGG | - | chr6_1:95347858-95347877 | None:intergenic | 20.0% |
| !!! | TTGTATATATTTTCCAAAAG+TGG | + | chr6_1:95348499-95348518 | Msa0899950:intron | 20.0% |
| !!! | TTTTTGATGATATTCGAATT+TGG | - | chr6_1:95349216-95349235 | None:intergenic | 20.0% |
| !!! | AATTAAGAAAAAGGTATGTT+TGG | - | chr6_1:95349592-95349611 | None:intergenic | 20.0% |
| !!! | AATGTAATTATAGGACATTT+TGG | + | chr6_1:95349641-95349660 | Msa0899950:intron | 20.0% |
| !! | TGAGTTTAATGTAAAGTTAT+TGG | - | chr6_1:95350500-95350519 | None:intergenic | 20.0% |
| !! | TTTACATTAAACTCAAAACA+CGG | + | chr6_1:95350505-95350524 | Msa0899950:intron | 20.0% |
| !! | GTTTAAATAATATCGTCTAA+AGG | - | chr6_1:95350602-95350621 | None:intergenic | 20.0% |
| !! | AAAAAAAGAACAAACAAGAT+TGG | - | chr6_1:95350720-95350739 | None:intergenic | 20.0% |
| !!! | TCCAAGTAATAATTTTTCTT+CGG | - | chr6_1:95351172-95351191 | None:intergenic | 20.0% |
| !! | CTTAGTTCATGACTTTTAAA+TGG | - | chr6_1:95347904-95347923 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGTGGTGTTAGT+CGG | + | chr6_1:95348031-95348050 | Msa0899950:intron | 25.0% |
| !!! | TTTTTTTTGTCTCTACATGA+AGG | + | chr6_1:95348256-95348275 | Msa0899950:intron | 25.0% |
| !! | TTAGAATATGTTTCCACTTT+TGG | - | chr6_1:95348515-95348534 | None:intergenic | 25.0% |
| ! | CAAAAATGTAGTTACTTACA+AGG | - | chr6_1:95349477-95349496 | None:intergenic | 25.0% |
| ! | ACTTATTTGAACTTATCTAC+TGG | - | chr6_1:95349565-95349584 | None:intergenic | 25.0% |
| ! | TAGAATTTGGACTAACTTTA+TGG | + | chr6_1:95349617-95349636 | Msa0899950:intron | 25.0% |
| ! | CTTTATGGCAATGTAATTAT+AGG | + | chr6_1:95349632-95349651 | Msa0899950:intron | 25.0% |
| ! | TTAGAGATCAAAATGAATTC+TGG | + | chr6_1:95349670-95349689 | Msa0899950:CDS | 25.0% |
| ! | TCCCTAAGGTAATATAATTA+AGG | + | chr6_1:95349922-95349941 | Msa0899950:intron | 25.0% |
| ! | CCCTTAATTATATTACCTTA+GGG | - | chr6_1:95349926-95349945 | None:intergenic | 25.0% |
| ! | CCCTAAGGTAATATAATTAA+GGG | + | chr6_1:95349923-95349942 | Msa0899950:intron | 25.0% |
| ! | ACCCTTAATTATATTACCTT+AGG | - | chr6_1:95349927-95349946 | None:intergenic | 25.0% |
| ! | AAGGTAATATAATTAAGGGT+CGG | + | chr6_1:95349927-95349946 | Msa0899950:intron | 25.0% |
| !! | TTTTTATAAGCTCTCTCAAA+CGG | - | chr6_1:95350002-95350021 | None:intergenic | 25.0% |
| ! | TTGAAGCTTCTATTGTAATA+TGG | + | chr6_1:95350238-95350257 | Msa0899950:CDS | 25.0% |
| ! | CTTCTATTGTAATATGGAAA+AGG | + | chr6_1:95350244-95350263 | Msa0899950:CDS | 25.0% |
| ! | AAAAGGAAGATGAATAAAGA+TGG | + | chr6_1:95350261-95350280 | Msa0899950:CDS | 25.0% |
| ! | ATAAAGATGGAAAATCTTCA+TGG | + | chr6_1:95350274-95350293 | Msa0899950:CDS | 25.0% |
| !! | TTGTTATCACCTTGTTATAT+TGG | - | chr6_1:95350419-95350438 | None:intergenic | 25.0% |
| !! | AATGTAAAGTTATTGGTGTT+TGG | - | chr6_1:95350493-95350512 | None:intergenic | 25.0% |
| ! | TAATAGATTGTTTATCGTTG+AGG | + | chr6_1:95350530-95350549 | Msa0899950:intron | 25.0% |
| !! | ATCTATTTTCTTGTGAATCA+AGG | + | chr6_1:95350742-95350761 | Msa0899950:intron | 25.0% |
| !!! | GATTGATGATGTTTTATATG+TGG | + | chr6_1:95350889-95350908 | Msa0899950:CDS | 25.0% |
| !!! | GAAAAAGTTTTGAATAAGCT+TGG | + | chr6_1:95351142-95351161 | Msa0899950:CDS | 25.0% |
| ! | ACCGAAGAAAAATTATTACT+TGG | + | chr6_1:95351168-95351187 | Msa0899950:CDS | 25.0% |
| TTTGATAAGGATCATGATGA+AGG | + | chr6_1:95347657-95347676 | Msa0899950:CDS | 30.0% | |
| TTGATAAGGATCATGATGAA+GGG | + | chr6_1:95347658-95347677 | Msa0899950:CDS | 30.0% | |
| ATATACCAGTGATATTCCAT+TGG | + | chr6_1:95347731-95347750 | Msa0899950:CDS | 30.0% | |
| AGAAAAATTATACCAGTTGG+TGG | - | chr6_1:95347834-95347853 | None:intergenic | 30.0% | |
| AAAGTCATGAACTAAGATCA+TGG | + | chr6_1:95347908-95347927 | Msa0899950:intron | 30.0% | |
| AAGTCATGAACTAAGATCAT+GGG | + | chr6_1:95347909-95347928 | Msa0899950:intron | 30.0% | |
| !! | TTCAGAAACTGATTTGATGA+AGG | + | chr6_1:95348328-95348347 | Msa0899950:intron | 30.0% |
| ! | CAAAAAAGTATATACCAGCA+AGG | - | chr6_1:95348445-95348464 | None:intergenic | 30.0% |
| ! | TTTTTGCCCTCAAATCTTTA+TGG | + | chr6_1:95348459-95348478 | Msa0899950:intron | 30.0% |
| TTCCTACCATAAAGATTTGA+GGG | - | chr6_1:95348468-95348487 | None:intergenic | 30.0% | |
| TTTCCTACCATAAAGATTTG+AGG | - | chr6_1:95348469-95348488 | None:intergenic | 30.0% | |
| CTTTATGGTAGGAAATGAAA+TGG | + | chr6_1:95348474-95348493 | Msa0899950:intron | 30.0% | |
| AACTTTAATCGTAACTTCGT+AGG | + | chr6_1:95348637-95348656 | Msa0899950:intron | 30.0% | |
| !! | TTTTGGAGAACAATCAAAGT+TGG | + | chr6_1:95348816-95348835 | Msa0899950:CDS | 30.0% |
| GTATCCTAATTGCATATATG+CGG | + | chr6_1:95349168-95349187 | Msa0899950:intron | 30.0% | |
| ! | ATCTAGAAATTTGAAGTCGT+GGG | - | chr6_1:95349332-95349351 | None:intergenic | 30.0% |
| ! | TTAAGTTGCATATCCAAACA+GGG | - | chr6_1:95349500-95349519 | None:intergenic | 30.0% |
| CTTTCATATCTTTGTCAGAA+TGG | + | chr6_1:95350093-95350112 | Msa0899950:intron | 30.0% | |
| CAGCAAAATCCAATATAACA+AGG | + | chr6_1:95350407-95350426 | Msa0899950:CDS | 30.0% | |
| CACTGTTGTTACTCTATATT+CGG | + | chr6_1:95350664-95350683 | Msa0899950:intron | 30.0% | |
| TTCAAGAGTAATAGAAAGCT+TGG | + | chr6_1:95350847-95350866 | Msa0899950:CDS | 30.0% | |
| !! | TGGCTTATACAGTTTTATCA+AGG | + | chr6_1:95350867-95350886 | Msa0899950:CDS | 30.0% |
| TTGAAAAGGACTAATTCTAC+AGG | + | chr6_1:95351091-95351110 | Msa0899950:CDS | 30.0% | |
| ! | AGAAAAATGTTTGAGATCCC+TGG | + | chr6_1:95347615-95347634 | Msa0899950:exon | 35.0% |
| ! | GAAAAATGTTTGAGATCCCT+GGG | + | chr6_1:95347616-95347635 | Msa0899950:exon | 35.0% |
| AACCTTGAATATGTTTCCCA+GGG | - | chr6_1:95347635-95347654 | None:intergenic | 35.0% | |
| AAACCTTGAATATGTTTCCC+AGG | - | chr6_1:95347636-95347655 | None:intergenic | 35.0% | |
| AGTTTCCAATGGAATATCAC+TGG | - | chr6_1:95347739-95347758 | None:intergenic | 35.0% | |
| ATATTGAGAGCAACTCCTAT+TGG | - | chr6_1:95347765-95347784 | None:intergenic | 35.0% | |
| GGGAGAAAAATTATACCAGT+TGG | - | chr6_1:95347837-95347856 | None:intergenic | 35.0% | |
| !! | AGATTTGCTAAGCTTCTTCT+AGG | + | chr6_1:95348353-95348372 | Msa0899950:CDS | 35.0% |
| !! | TATACCAGCAAGGTTTGTTA+TGG | - | chr6_1:95348435-95348454 | None:intergenic | 35.0% |
| !! | CATGACATGTGGTTTGTTAT+AGG | + | chr6_1:95348551-95348570 | Msa0899950:intron | 35.0% |
| ! | TTCCATGTAGCATCTGTTTT+TGG | + | chr6_1:95348799-95348818 | Msa0899950:intron | 35.0% |
| GGTGGAGAAAAGAAATTGAA+TGG | + | chr6_1:95348866-95348885 | Msa0899950:CDS | 35.0% | |
| ATTCTGCTTCCATACGATTA+GGG | + | chr6_1:95349008-95349027 | Msa0899950:intron | 35.0% | |
| ATTCTCCACATTCAGACAAT+TGG | + | chr6_1:95349031-95349050 | Msa0899950:intron | 35.0% | |
| TTCTCCACATTCAGACAATT+GGG | + | chr6_1:95349032-95349051 | Msa0899950:intron | 35.0% | |
| CAGTAGTTGTTTGATCAAGA+GGG | - | chr6_1:95349148-95349167 | None:intergenic | 35.0% | |
| TTCTCCGCATATATGCAATT+AGG | - | chr6_1:95349175-95349194 | None:intergenic | 35.0% | |
| ! | GATCTAGAAATTTGAAGTCG+TGG | - | chr6_1:95349333-95349352 | None:intergenic | 35.0% |
| GTCACAGATATATCTAGTGA+TGG | - | chr6_1:95349355-95349374 | None:intergenic | 35.0% | |
| ATTTGTAGATCATGACGACT+CGG | + | chr6_1:95349395-95349414 | Msa0899950:intron | 35.0% | |
| ! | AACTACATTTTTGCCCTGTT+TGG | + | chr6_1:95349484-95349503 | Msa0899950:intron | 35.0% |
| ! | GTTAAGTTGCATATCCAAAC+AGG | - | chr6_1:95349501-95349520 | None:intergenic | 35.0% |
| GCAACTTAACTATACGCTTA+TGG | + | chr6_1:95349511-95349530 | Msa0899950:intron | 35.0% | |
| GTATGTCTCAAAAAGTGATG+AGG | + | chr6_1:95349692-95349711 | Msa0899950:CDS | 35.0% | |
| CTCAAAGAAAGAGTGACAAA+TGG | + | chr6_1:95349736-95349755 | Msa0899950:CDS | 35.0% | |
| AAAGAAAGAGTGACAAATGG+TGG | + | chr6_1:95349739-95349758 | Msa0899950:CDS | 35.0% | |
| TTGGAGGAACTTTAACAACT+GGG | - | chr6_1:95349767-95349786 | None:intergenic | 35.0% | |
| TTGTTAAAGTTCCTCCAACA+GGG | + | chr6_1:95349769-95349788 | Msa0899950:CDS | 35.0% | |
| TATCAGATGTAGCTGTGAAA+TGG | + | chr6_1:95349793-95349812 | Msa0899950:CDS | 35.0% | |
| CTTGGTTAACATTGTCTTTC+TGG | - | chr6_1:95349827-95349846 | None:intergenic | 35.0% | |
| TACTTGAGCATTTATTGCCA+TGG | - | chr6_1:95349862-95349881 | None:intergenic | 35.0% | |
| AGAGATTCAATGTAGTTGTC+AGG | - | chr6_1:95349903-95349922 | None:intergenic | 35.0% | |
| AAAAACGCTTAATGATTCCG+CGG | + | chr6_1:95350020-95350039 | Msa0899950:intron | 35.0% | |
| ATTATCTCTATACCATACCG+CGG | - | chr6_1:95350040-95350059 | None:intergenic | 35.0% | |
| GATCTATAAGTGCATTACTG+TGG | + | chr6_1:95350137-95350156 | Msa0899950:CDS | 35.0% | |
| TACTGTGGAATACTTTGATC+CGG | + | chr6_1:95350152-95350171 | Msa0899950:CDS | 35.0% | |
| GTCAAGAACTTTATGTTCTG+TGG | - | chr6_1:95350205-95350224 | None:intergenic | 35.0% | |
| AAGTTCTTGACCTCAAGAAT+AGG | + | chr6_1:95350214-95350233 | Msa0899950:CDS | 35.0% | |
| AAGCTTCAATCCTATTCTTG+AGG | - | chr6_1:95350227-95350246 | None:intergenic | 35.0% | |
| TGGAAAATCTTCATGGAGTT+CGG | + | chr6_1:95350281-95350300 | Msa0899950:CDS | 35.0% | |
| ATGATCAAACAAGAGTTTCC+AGG | + | chr6_1:95350360-95350379 | Msa0899950:CDS | 35.0% | |
| GATTGTTTATCGTTGAGGTA+TGG | + | chr6_1:95350535-95350554 | Msa0899950:intron | 35.0% | |
| GCTCATAGTTTACTGATAAG+TGG | + | chr6_1:95350557-95350576 | Msa0899950:intron | 35.0% | |
| ! | TCTTGAATAGCTCTCTAGAA+TGG | - | chr6_1:95350834-95350853 | None:intergenic | 35.0% |
| AATGACAAAGAATCCATCGT+TGG | + | chr6_1:95350916-95350935 | Msa0899950:CDS | 35.0% | |
| AAATCTGAGAGAGTCATTGA+TGG | - | chr6_1:95351049-95351068 | None:intergenic | 35.0% | |
| AATGACTCTCTCAGATTTCA+TGG | + | chr6_1:95351051-95351070 | Msa0899950:CDS | 35.0% | |
| ATGACTCTCTCAGATTTCAT+GGG | + | chr6_1:95351052-95351071 | Msa0899950:CDS | 35.0% | |
| GGACAAAAGGAGATTTGAAA+AGG | + | chr6_1:95351077-95351096 | Msa0899950:CDS | 35.0% | |
| ATCCCTGGGAAACATATTCA+AGG | + | chr6_1:95347630-95347649 | Msa0899950:CDS | 40.0% | |
| !! | ATTATACCAGTTGGTGGCTT+AGG | - | chr6_1:95347828-95347847 | None:intergenic | 40.0% |
| AAATGGTGTTTCTTCAGCAC+TGG | + | chr6_1:95348397-95348416 | Msa0899950:CDS | 40.0% | |
| AATGCCATAACAAACCTTGC+TGG | + | chr6_1:95348428-95348447 | Msa0899950:CDS | 40.0% | |
| TGCCCTCAAATCTTTATGGT+AGG | + | chr6_1:95348463-95348482 | Msa0899950:intron | 40.0% | |
| CTCCAAAAACAGATGCTACA+TGG | - | chr6_1:95348804-95348823 | None:intergenic | 40.0% | |
| GTCTTCCTTTCTTGAGACAT+TGG | - | chr6_1:95348844-95348863 | None:intergenic | 40.0% | |
| TGTCTCAAGAAAGGAAGACT+AGG | + | chr6_1:95348845-95348864 | Msa0899950:CDS | 40.0% | |
| TCCATCACAACAGTTAGCTA+AGG | + | chr6_1:95348924-95348943 | Msa0899950:CDS | 40.0% | |
| TCCTTAGCTAACTGTTGTGA+TGG | - | chr6_1:95348928-95348947 | None:intergenic | 40.0% | |
| TCACAACAGTTAGCTAAGGA+TGG | + | chr6_1:95348928-95348947 | Msa0899950:CDS | 40.0% | |
| GATTCTGCTTCCATACGATT+AGG | + | chr6_1:95349007-95349026 | Msa0899950:intron | 40.0% | |
| TTGTCCCAATTGTCTGAATG+TGG | - | chr6_1:95349039-95349058 | None:intergenic | 40.0% | |
| TTCAGACAATTGGGACAATG+TGG | + | chr6_1:95349041-95349060 | Msa0899950:intron | 40.0% | |
| CCAGTAGTTGTTTGATCAAG+AGG | - | chr6_1:95349149-95349168 | None:intergenic | 40.0% | |
| CCTCTTGATCAAACAACTAC+TGG | + | chr6_1:95349146-95349165 | Msa0899950:intron | 40.0% | |
| AAAAGTGATGAGGAAGCTGA+AGG | + | chr6_1:95349702-95349721 | Msa0899950:CDS | 40.0% | |
| GTTGGAGGAACTTTAACAAC+TGG | - | chr6_1:95349768-95349787 | None:intergenic | 40.0% | |
| GTTGTTAAAGTTCCTCCAAC+AGG | + | chr6_1:95349768-95349787 | Msa0899950:CDS | 40.0% | |
| CTACATTGAATCTCTCCCTA+AGG | + | chr6_1:95349908-95349927 | Msa0899950:CDS | 40.0% | |
| ! | ACTTATAGATCGACTCACCA+AGG | - | chr6_1:95350128-95350147 | None:intergenic | 40.0% |
| ACTGTGGAATACTTTGATCC+GGG | + | chr6_1:95350153-95350172 | Msa0899950:CDS | 40.0% | |
| ATTGTTGAGAGGAATTGTCC+CGG | - | chr6_1:95350174-95350193 | None:intergenic | 40.0% | |
| CTGATATCAAGTGAAGACTG+TGG | - | chr6_1:95350390-95350409 | None:intergenic | 40.0% | |
| GTTACTCTATATTCGGAGAC+TGG | + | chr6_1:95350671-95350690 | Msa0899950:intron | 40.0% | |
| CAAGATTGGATCACGAAGTT+TGG | - | chr6_1:95350706-95350725 | None:intergenic | 40.0% | |
| ACTGCTTCCAAAATGATCAC+AGG | + | chr6_1:95350796-95350815 | Msa0899950:intron | 40.0% | |
| TCCAAAATGATCACAGGATG+TGG | + | chr6_1:95350802-95350821 | Msa0899950:intron | 40.0% | |
| CCAAAATGATCACAGGATGT+GGG | + | chr6_1:95350803-95350822 | Msa0899950:intron | 40.0% | |
| AAGAATCCAACGAGAATCTC+CGG | - | chr6_1:95350952-95350971 | None:intergenic | 40.0% | |
| ATTCTCGTTGGATTCTTTGC+CGG | + | chr6_1:95350955-95350974 | Msa0899950:CDS | 40.0% | |
| TCAAACATCTCCAAACTCTG+AGG | + | chr6_1:95350985-95351004 | Msa0899950:CDS | 40.0% | |
| GATTTCATGGGATGGACAAA+AGG | + | chr6_1:95351064-95351083 | Msa0899950:CDS | 40.0% | |
| ! | CCTATTGGCTGAGTTTCCAA+TGG | - | chr6_1:95347750-95347769 | None:intergenic | 45.0% |
| CCATTGGAAACTCAGCCAAT+AGG | + | chr6_1:95347747-95347766 | Msa0899950:CDS | 45.0% | |
| ! | CTTCTAGGAGAAGACATGTC+AGG | + | chr6_1:95348368-95348387 | Msa0899950:CDS | 45.0% |
| GTGTCACATGACATGACATG+TGG | + | chr6_1:95348540-95348559 | Msa0899950:intron | 45.0% | |
| TGGAGCCAATGTCTCAAGAA+AGG | + | chr6_1:95348836-95348855 | Msa0899950:CDS | 45.0% | |
| CTCAAGAAAGGAAGACTAGG+TGG | + | chr6_1:95348848-95348867 | Msa0899950:CDS | 45.0% | |
| AGCTAAGGATGGATCAACCA+TGG | + | chr6_1:95348939-95348958 | Msa0899950:CDS | 45.0% | |
| TAAGGATGGATCAACCATGG+AGG | + | chr6_1:95348942-95348961 | Msa0899950:CDS | 45.0% | |
| AAGCTGAGTGTTTACCTCCA+TGG | - | chr6_1:95348959-95348978 | None:intergenic | 45.0% | |
| GTGGAGAATCCCTAATCGTA+TGG | - | chr6_1:95349020-95349039 | None:intergenic | 45.0% | |
| TGTGGCCGTTTGATCATGAT+CGG | + | chr6_1:95349059-95349078 | Msa0899950:intron | 45.0% | |
| ACCGTCCGATCATGATCAAA+CGG | - | chr6_1:95349067-95349086 | None:intergenic | 45.0% | |
| CGATCTGCTCATGAACATTC+CGG | + | chr6_1:95349426-95349445 | Msa0899950:CDS | 45.0% | |
| ACATCTGATAACCCTGTTGG+AGG | - | chr6_1:95349783-95349802 | None:intergenic | 45.0% | |
| GCTACATCTGATAACCCTGT+TGG | - | chr6_1:95349786-95349805 | None:intergenic | 45.0% | |
| ! | CCATGGCTGCTTTAAGTACT+TGG | - | chr6_1:95349845-95349864 | None:intergenic | 45.0% |
| CCAAGTACTTAAAGCAGCCA+TGG | + | chr6_1:95349842-95349861 | Msa0899950:CDS | 45.0% | |
| TGCTCAAGTACTATCCGAGA+TGG | + | chr6_1:95349872-95349891 | Msa0899950:CDS | 45.0% | |
| GTTGTCAGGTATCTCCATCT+CGG | - | chr6_1:95349889-95349908 | None:intergenic | 45.0% | |
| CAGAATGGTAGAGAAAGCCT+TGG | + | chr6_1:95350108-95350127 | Msa0899950:intron | 45.0% | |
| GGGACAATTCCTCTCAACAA+TGG | + | chr6_1:95350173-95350192 | Msa0899950:CDS | 45.0% | |
| TGGTCATGTCCATTGTTGAG+AGG | - | chr6_1:95350185-95350204 | None:intergenic | 45.0% | |
| ATGGAGTTCGGCAATAAGCA+TGG | + | chr6_1:95350293-95350312 | Msa0899950:CDS | 45.0% | |
| GGCAATAAGCATGGAGAAGA+GGG | + | chr6_1:95350302-95350321 | Msa0899950:CDS | 45.0% | |
| ! | CCCACATCCTGTGATCATTT+TGG | - | chr6_1:95350806-95350825 | None:intergenic | 45.0% |
| GACAAAGAATCCATCGTTGG+CGG | + | chr6_1:95350919-95350938 | Msa0899950:CDS | 45.0% | |
| ! | ACATCTCCAAACTCTGAGGA+TGG | + | chr6_1:95350989-95351008 | Msa0899950:CDS | 45.0% |
| TCTGAGAGAGTCATTGATGG+TGG | - | chr6_1:95351046-95351065 | None:intergenic | 45.0% | |
| CTCTCTCAGATTTCATGGGA+TGG | + | chr6_1:95351056-95351075 | Msa0899950:CDS | 45.0% | |
| !!! | TGAATTTTTTTTTTAATTAA+TGG | + | chr6_1:95348299-95348318 | Msa0899950:intron | 5.0% |
| !! | ATACCAGTTGGTGGCTTAGG+AGG | - | chr6_1:95347825-95347844 | None:intergenic | 50.0% |
| GACATGTCAGGTGCAGGAAA+TGG | + | chr6_1:95348380-95348399 | Msa0899950:CDS | 50.0% | |
| GCCGTTTGATCATGATCGGA+CGG | + | chr6_1:95349063-95349082 | Msa0899950:intron | 50.0% | |
| ATTTGGACTCCACGCAGTCA+AGG | - | chr6_1:95349199-95349218 | None:intergenic | 50.0% | |
| CATTGCATCAAGCTTGCGCA+AGG | - | chr6_1:95349452-95349471 | None:intergenic | 50.0% | |
| CGCTTAATGATTCCGCGGTA+TGG | + | chr6_1:95350025-95350044 | Msa0899950:intron | 50.0% | |
| CGGCAATAAGCATGGAGAAG+AGG | + | chr6_1:95350301-95350320 | Msa0899950:CDS | 50.0% | |
| AGTGAAGACTGTGGAAGTCC+TGG | - | chr6_1:95350381-95350400 | None:intergenic | 50.0% | |
| GGAGATGTTTGATCAGCCAC+CGG | - | chr6_1:95350977-95350996 | None:intergenic | 50.0% | |
| ! | TCTCCAAACTCTGAGGATGG+TGG | + | chr6_1:95350992-95351011 | Msa0899950:CDS | 50.0% |
| ! | CTCCAAACTCTGAGGATGGT+GGG | + | chr6_1:95350993-95351012 | Msa0899950:CDS | 50.0% |
| ATCCCACCATCCTCAGAGTT+TGG | - | chr6_1:95350998-95351017 | None:intergenic | 50.0% | |
| !! | AACTCTGAGGATGGTGGGAT+AGG | + | chr6_1:95350998-95351017 | Msa0899950:CDS | 50.0% |
| ATGCCTCCTAAGCCACCAAC+TGG | + | chr6_1:95347819-95347838 | Msa0899950:CDS | 55.0% | |
| GGAGAAGACATGTCAGGTGC+AGG | + | chr6_1:95348374-95348393 | Msa0899950:CDS | 55.0% | |
| AAAGGGCAGTCGAGAGTGAC+TGG | - | chr6_1:95350584-95350603 | None:intergenic | 55.0% | |
| ATCCAGCCGGAGATTCTCGT+TGG | + | chr6_1:95350943-95350962 | Msa0899950:CDS | 55.0% | |
| ATCCAACGAGAATCTCCGGC+TGG | - | chr6_1:95350948-95350967 | None:intergenic | 55.0% | |
| CTCGTTGGATTCTTTGCCGG+TGG | + | chr6_1:95350958-95350977 | Msa0899950:CDS | 55.0% | |
| !! | CTGAGGATGGTGGGATAGGA+AGG | + | chr6_1:95351002-95351021 | Msa0899950:CDS | 55.0% |
| GCGGAGAATCCTTGACTGCG+TGG | + | chr6_1:95349187-95349206 | Msa0899950:intron | 60.0% | |
| GCATCAAGCTTGCGCAAGGC+CGG | - | chr6_1:95349448-95349467 | None:intergenic | 60.0% | |
| CATCGTTGGCGGCATCCAGC+CGG | + | chr6_1:95350930-95350949 | Msa0899950:CDS | 65.0% | |
| CGGCTGGATGCCGCCAACGA+TGG | - | chr6_1:95350932-95350951 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 95347591 | 95351240 | 95347591 | ID=Msa0899950;Name=Msa0899950 |
| chr6_1 | mRNA | 95347591 | 95351240 | 95347591 | ID=Msa0899950-mRNA-1;Parent=Msa0899950;Name=Msa0899950-mRNA-1;_AED=0.04;_eAED=0.04;_QI=30|0.83|0.57|1|1|1|7|0|527 |
| chr6_1 | exon | 95347591 | 95347840 | 95347591 | ID=Msa0899950-mRNA-1:exon:16390;Parent=Msa0899950-mRNA-1 |
| chr6_1 | exon | 95348333 | 95348449 | 95348333 | ID=Msa0899950-mRNA-1:exon:16391;Parent=Msa0899950-mRNA-1 |
| chr6_1 | exon | 95348809 | 95348963 | 95348809 | ID=Msa0899950-mRNA-1:exon:16392;Parent=Msa0899950-mRNA-1 |
| chr6_1 | exon | 95349403 | 95349477 | 95349403 | ID=Msa0899950-mRNA-1:exon:16393;Parent=Msa0899950-mRNA-1 |
| chr6_1 | exon | 95349654 | 95349929 | 95349654 | ID=Msa0899950-mRNA-1:exon:16394;Parent=Msa0899950-mRNA-1 |
| chr6_1 | exon | 95350111 | 95350428 | 95350111 | ID=Msa0899950-mRNA-1:exon:16395;Parent=Msa0899950-mRNA-1 |
| chr6_1 | exon | 95350818 | 95351240 | 95350818 | ID=Msa0899950-mRNA-1:exon:16396;Parent=Msa0899950-mRNA-1 |
| chr6_1 | five_prime_UTR | 95347591 | 95347620 | 95347591 | ID=Msa0899950-mRNA-1:five_prime_utr;Parent=Msa0899950-mRNA-1 |
| chr6_1 | CDS | 95347621 | 95347840 | 95347621 | ID=Msa0899950-mRNA-1:cds;Parent=Msa0899950-mRNA-1 |
| chr6_1 | CDS | 95348333 | 95348449 | 95348333 | ID=Msa0899950-mRNA-1:cds;Parent=Msa0899950-mRNA-1 |
| chr6_1 | CDS | 95348809 | 95348963 | 95348809 | ID=Msa0899950-mRNA-1:cds;Parent=Msa0899950-mRNA-1 |
| chr6_1 | CDS | 95349403 | 95349477 | 95349403 | ID=Msa0899950-mRNA-1:cds;Parent=Msa0899950-mRNA-1 |
| chr6_1 | CDS | 95349654 | 95349929 | 95349654 | ID=Msa0899950-mRNA-1:cds;Parent=Msa0899950-mRNA-1 |
| chr6_1 | CDS | 95350111 | 95350428 | 95350111 | ID=Msa0899950-mRNA-1:cds;Parent=Msa0899950-mRNA-1 |
| chr6_1 | CDS | 95350818 | 95351240 | 95350818 | ID=Msa0899950-mRNA-1:cds;Parent=Msa0899950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
